2025-01-08T02:24:40,201 Disabling truststore because Python version isn't 3.10+ 2025-01-08T02:24:40,687 Created temporary directory: /tmp/pip-build-tracker-3uscebr_ 2025-01-08T02:24:40,688 Initialized build tracking at /tmp/pip-build-tracker-3uscebr_ 2025-01-08T02:24:40,688 Created build tracker: /tmp/pip-build-tracker-3uscebr_ 2025-01-08T02:24:40,688 Entered build tracker: /tmp/pip-build-tracker-3uscebr_ 2025-01-08T02:24:40,689 Created temporary directory: /tmp/pip-wheel-b9c7nezk 2025-01-08T02:24:40,694 Created temporary directory: /tmp/pip-ephem-wheel-cache-lw3mm_fy 2025-01-08T02:24:40,737 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-08T02:24:40,740 2 location(s) to search for versions of rsalor: 2025-01-08T02:24:40,740 * https://pypi.org/simple/rsalor/ 2025-01-08T02:24:40,740 * https://www.piwheels.org/simple/rsalor/ 2025-01-08T02:24:40,741 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2025-01-08T02:24:40,741 Getting page https://pypi.org/simple/rsalor/ 2025-01-08T02:24:40,743 Found index url https://pypi.org/simple/ 2025-01-08T02:24:40,762 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2025-01-08T02:24:40,765 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2025-01-08T02:24:40,765 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2025-01-08T02:24:40,766 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2025-01-08T02:24:40,767 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2025-01-08T02:24:40,767 Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4 2025-01-08T02:24:40,768 Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5 2025-01-08T02:24:40,768 Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6 2025-01-08T02:24:40,769 Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7 2025-01-08T02:24:40,769 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2025-01-08T02:24:40,769 Getting page https://www.piwheels.org/simple/rsalor/ 2025-01-08T02:24:40,770 Found index url https://www.piwheels.org/simple/ 2025-01-08T02:24:40,826 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2025-01-08T02:24:40,832 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,833 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,833 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,833 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,833 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,834 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,834 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,834 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,834 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,834 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,835 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,835 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,835 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,835 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,835 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,836 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,836 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,836 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T02:24:40,836 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2025-01-08T02:24:40,836 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2025-01-08T02:24:40,855 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2025-01-08T02:24:40,857 Collecting rsalor==1.0.7 2025-01-08T02:24:40,859 Created temporary directory: /tmp/pip-unpack-hbpm180z 2025-01-08T02:24:40,876 Downloading rsalor-1.0.7.tar.gz (48 kB) 2025-01-08T02:24:40,966 Added rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-3uscebr_' 2025-01-08T02:24:40,967 Running setup.py (path:/tmp/pip-wheel-b9c7nezk/rsalor_fa0a8f6cc63440fabbd2a01904cd4e12/setup.py) egg_info for package rsalor 2025-01-08T02:24:40,968 Created temporary directory: /tmp/pip-pip-egg-info-th7qx7xs 2025-01-08T02:24:40,968 Preparing metadata (setup.py): started 2025-01-08T02:24:40,969 Running command python setup.py egg_info 2025-01-08T02:24:42,021 running egg_info 2025-01-08T02:24:42,050 creating /tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info 2025-01-08T02:24:42,051 writing /tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/PKG-INFO 2025-01-08T02:24:42,055 writing dependency_links to /tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/dependency_links.txt 2025-01-08T02:24:42,057 writing requirements to /tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/requires.txt 2025-01-08T02:24:42,058 writing top-level names to /tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/top_level.txt 2025-01-08T02:24:42,059 writing manifest file '/tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/SOURCES.txt' 2025-01-08T02:24:42,184 reading manifest file '/tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/SOURCES.txt' 2025-01-08T02:24:42,186 reading manifest template 'MANIFEST.in' 2025-01-08T02:24:42,193 warning: no previously-included files found matching 'fig/*' 2025-01-08T02:24:42,193 warning: no previously-included files found matching 'src/*' 2025-01-08T02:24:42,194 warning: no previously-included files found matching 'tmp/*' 2025-01-08T02:24:42,195 warning: no previously-included files found matching '0_*' 2025-01-08T02:24:42,195 warning: no previously-included files found matching 'conda-env.yml' 2025-01-08T02:24:42,196 warning: no previously-included files found matching 'test_data/*' 2025-01-08T02:24:42,196 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-08T02:24:42,197 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-08T02:24:42,198 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-08T02:24:42,199 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-08T02:24:42,199 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-08T02:24:42,200 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-08T02:24:42,201 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2025-01-08T02:24:42,201 adding license file 'LICENCE' 2025-01-08T02:24:42,205 writing manifest file '/tmp/pip-pip-egg-info-th7qx7xs/rsalor.egg-info/SOURCES.txt' 2025-01-08T02:24:42,293 Preparing metadata (setup.py): finished with status 'done' 2025-01-08T02:24:42,298 Source in /tmp/pip-wheel-b9c7nezk/rsalor_fa0a8f6cc63440fabbd2a01904cd4e12 has version 1.0.7, which satisfies requirement rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz 2025-01-08T02:24:42,299 Removed rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-3uscebr_' 2025-01-08T02:24:42,307 Created temporary directory: /tmp/pip-unpack-x6kmvv__ 2025-01-08T02:24:42,308 Created temporary directory: /tmp/pip-unpack-h1l5ao_q 2025-01-08T02:24:42,308 Building wheels for collected packages: rsalor 2025-01-08T02:24:42,311 Created temporary directory: /tmp/pip-wheel-9563j2e4 2025-01-08T02:24:42,312 Building wheel for rsalor (setup.py): started 2025-01-08T02:24:42,313 Destination directory: /tmp/pip-wheel-9563j2e4 2025-01-08T02:24:42,313 Running command python setup.py bdist_wheel 2025-01-08T02:24:43,342 running bdist_wheel 2025-01-08T02:24:43,483 running build 2025-01-08T02:24:43,483 running build_py 2025-01-08T02:24:43,517 creating build/lib.linux-armv7l-cpython-39/rsalor 2025-01-08T02:24:43,519 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-08T02:24:43,522 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-08T02:24:43,525 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,526 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,527 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,530 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,532 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,534 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,537 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-08T02:24:43,539 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-08T02:24:43,541 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-08T02:24:43,543 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-08T02:24:43,545 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-08T02:24:43,547 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-08T02:24:43,548 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-08T02:24:43,550 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-08T02:24:43,554 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,555 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,558 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,560 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,562 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,564 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-08T02:24:43,567 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,568 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,570 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,572 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,574 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,577 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-08T02:24:43,586 running build_ext 2025-01-08T02:24:43,593 building 'rsalor.weights.lib_computeWeightsBackend' extension 2025-01-08T02:24:43,594 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2025-01-08T02:24:43,596 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 2025-01-08T02:24:45,371 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2025-01-08T02:24:45,372 rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2025-01-08T02:24:45,372 38 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2025-01-08T02:24:45,373 | ~~^~~~~~~~~~~ 2025-01-08T02:24:45,934 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 2025-01-08T02:24:50,378 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -O3 2025-01-08T02:24:50,692 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-08T02:24:50,692 !! 2025-01-08T02:24:50,693 ******************************************************************************** 2025-01-08T02:24:50,693 Please avoid running ``setup.py`` directly. 2025-01-08T02:24:50,693 Instead, use pypa/build, pypa/installer or other 2025-01-08T02:24:50,693 standards-based tools. 2025-01-08T02:24:50,693 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-08T02:24:50,693 ******************************************************************************** 2025-01-08T02:24:50,694 !! 2025-01-08T02:24:50,694 self.initialize_options() 2025-01-08T02:24:50,720 installing to build/bdist.linux-armv7l/wheel 2025-01-08T02:24:50,720 running install 2025-01-08T02:24:50,746 running install_lib 2025-01-08T02:24:50,782 creating build/bdist.linux-armv7l/wheel 2025-01-08T02:24:50,785 creating build/bdist.linux-armv7l/wheel/rsalor 2025-01-08T02:24:50,786 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-08T02:24:50,790 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-08T02:24:50,793 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2025-01-08T02:24:50,794 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,796 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,798 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,800 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,802 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,804 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T02:24:50,807 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2025-01-08T02:24:50,808 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T02:24:50,810 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T02:24:50,812 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T02:24:50,815 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2025-01-08T02:24:50,816 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T02:24:50,831 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T02:24:50,833 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T02:24:50,835 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2025-01-08T02:24:50,837 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T02:24:50,839 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T02:24:50,841 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T02:24:50,842 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T02:24:50,845 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T02:24:50,847 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2025-01-08T02:24:50,849 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T02:24:50,851 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T02:24:50,853 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T02:24:50,855 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T02:24:50,857 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T02:24:50,859 running install_egg_info 2025-01-08T02:24:50,895 running egg_info 2025-01-08T02:24:50,923 writing rsalor.egg-info/PKG-INFO 2025-01-08T02:24:50,927 writing dependency_links to rsalor.egg-info/dependency_links.txt 2025-01-08T02:24:50,928 writing requirements to rsalor.egg-info/requires.txt 2025-01-08T02:24:50,929 writing top-level names to rsalor.egg-info/top_level.txt 2025-01-08T02:24:50,969 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-08T02:24:50,973 reading manifest template 'MANIFEST.in' 2025-01-08T02:24:50,980 warning: no previously-included files found matching 'fig/*' 2025-01-08T02:24:50,980 warning: no previously-included files found matching 'src/*' 2025-01-08T02:24:50,981 warning: no previously-included files found matching 'tmp/*' 2025-01-08T02:24:50,981 warning: no previously-included files found matching '0_*' 2025-01-08T02:24:50,982 warning: no previously-included files found matching 'conda-env.yml' 2025-01-08T02:24:50,983 warning: no previously-included files found matching 'test_data/*' 2025-01-08T02:24:50,983 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-08T02:24:50,984 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-08T02:24:50,985 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-08T02:24:50,986 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-08T02:24:50,986 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-08T02:24:50,987 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-08T02:24:50,988 adding license file 'LICENCE' 2025-01-08T02:24:50,993 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-08T02:24:50,994 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.7-py3.9.egg-info 2025-01-08T02:24:51,004 running install_scripts 2025-01-08T02:24:51,059 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.7.dist-info/WHEEL 2025-01-08T02:24:51,061 creating '/tmp/pip-wheel-9563j2e4/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-08T02:24:51,064 adding 'rsalor/__init__.py' 2025-01-08T02:24:51,069 adding 'rsalor/msa.py' 2025-01-08T02:24:51,071 adding 'rsalor/rsa/__init__.py' 2025-01-08T02:24:51,072 adding 'rsalor/rsa/rsa_biopython.py' 2025-01-08T02:24:51,074 adding 'rsalor/rsa/rsa_dssp.py' 2025-01-08T02:24:51,076 adding 'rsalor/rsa/rsa_music.py' 2025-01-08T02:24:51,077 adding 'rsalor/rsa/rsa_solver.py' 2025-01-08T02:24:51,079 adding 'rsalor/sequence/__init__.py' 2025-01-08T02:24:51,082 adding 'rsalor/sequence/amino_acid.py' 2025-01-08T02:24:51,083 adding 'rsalor/sequence/fasta_reader.py' 2025-01-08T02:24:51,085 adding 'rsalor/sequence/mutation.py' 2025-01-08T02:24:51,087 adding 'rsalor/sequence/pairwise_alignment.py' 2025-01-08T02:24:51,088 adding 'rsalor/sequence/sequence.py' 2025-01-08T02:24:51,090 adding 'rsalor/structure/__init__.py' 2025-01-08T02:24:51,091 adding 'rsalor/structure/residue.py' 2025-01-08T02:24:51,093 adding 'rsalor/structure/structure.py' 2025-01-08T02:24:51,096 adding 'rsalor/utils/CSV.py' 2025-01-08T02:24:51,097 adding 'rsalor/utils/__init__.py' 2025-01-08T02:24:51,098 adding 'rsalor/utils/ali_to_fasta.py' 2025-01-08T02:24:51,100 adding 'rsalor/utils/logger.py' 2025-01-08T02:24:51,101 adding 'rsalor/utils/utils.py' 2025-01-08T02:24:51,103 adding 'rsalor/weights/__init__.py' 2025-01-08T02:24:51,104 adding 'rsalor/weights/compute_weights.py' 2025-01-08T02:24:51,201 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2025-01-08T02:24:51,206 adding 'rsalor-1.0.7.dist-info/LICENCE' 2025-01-08T02:24:51,208 adding 'rsalor-1.0.7.dist-info/METADATA' 2025-01-08T02:24:51,209 adding 'rsalor-1.0.7.dist-info/WHEEL' 2025-01-08T02:24:51,210 adding 'rsalor-1.0.7.dist-info/top_level.txt' 2025-01-08T02:24:51,211 adding 'rsalor-1.0.7.dist-info/RECORD' 2025-01-08T02:24:51,214 removing build/bdist.linux-armv7l/wheel 2025-01-08T02:24:51,318 Building wheel for rsalor (setup.py): finished with status 'done' 2025-01-08T02:24:51,323 Created wheel for rsalor: filename=rsalor-1.0.7-cp39-cp39-linux_armv7l.whl size=225022 sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 2025-01-08T02:24:51,324 Stored in directory: /tmp/pip-ephem-wheel-cache-lw3mm_fy/wheels/11/a4/15/79039adcb8ee9a69bfc0e3a5c62538af978a72761cf472e762 2025-01-08T02:24:51,336 Successfully built rsalor 2025-01-08T02:24:51,346 Removed build tracker: '/tmp/pip-build-tracker-3uscebr_'