2025-01-08T10:02:26,668 Created temporary directory: /tmp/pip-build-tracker-ay3n7y_m
2025-01-08T10:02:26,670 Initialized build tracking at /tmp/pip-build-tracker-ay3n7y_m
2025-01-08T10:02:26,671 Created build tracker: /tmp/pip-build-tracker-ay3n7y_m
2025-01-08T10:02:26,671 Entered build tracker: /tmp/pip-build-tracker-ay3n7y_m
2025-01-08T10:02:26,672 Created temporary directory: /tmp/pip-wheel-ityshem3
2025-01-08T10:02:26,676 Created temporary directory: /tmp/pip-ephem-wheel-cache-gog4f12s
2025-01-08T10:02:26,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-08T10:02:26,722 2 location(s) to search for versions of soapy-st:
2025-01-08T10:02:26,722 * https://pypi.org/simple/soapy-st/
2025-01-08T10:02:26,722 * https://www.piwheels.org/simple/soapy-st/
2025-01-08T10:02:26,723 Fetching project page and analyzing links: https://pypi.org/simple/soapy-st/
2025-01-08T10:02:26,724 Getting page https://pypi.org/simple/soapy-st/
2025-01-08T10:02:26,726 Found index url https://pypi.org/simple/
2025-01-08T10:02:26,946 Fetched page https://pypi.org/simple/soapy-st/ as application/vnd.pypi.simple.v1+json
2025-01-08T10:02:26,952   Found link https://files.pythonhosted.org/packages/26/ef/07d2cc6a416a2962d02658155c1a0ba11bfc0f294a28701a880888aadebf/SOAPy-st-0.1.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.0
2025-01-08T10:02:26,953   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a4/47/c919aacc1a29a1509890a939821621d8bfea16fc15efdd1b845830b3c0ea/SOAPy_st-0.1.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,953   Found link https://files.pythonhosted.org/packages/6a/c4/2aae67cff1af7affce1ecdf80fa2f0aeca0cc34c34d524f690d80c79662e/SOAPy-st-0.1.2.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.2
2025-01-08T10:02:26,954   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/f5/cc/585b624914621cbff914d1d73e94a392ad0631a17a55ef8b9025ff9d7bde/SOAPy_st-0.1.2-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,955   Found link https://files.pythonhosted.org/packages/14/bf/41fa18c6356fa85d7e53bc8f384c6169a613ff8074cd6fe26d9734bdb258/SOAPy-st-0.1.3.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.3
2025-01-08T10:02:26,956   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/01/76/0370ef54a91fc2dacec2581cdbe1cecef35f9880afd556ba974b92726b02/SOAPy_st-0.1.3-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,957   Found link https://files.pythonhosted.org/packages/44/90/046401a8b275c9ccefb48083c6b59ae71ea2146fac4f85ddf38e92dcbc48/SOAPy-st-0.1.4.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.4
2025-01-08T10:02:26,957   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a7/3a/827460d431b0d1718673606675e4bf23b17eaae4b26be66803c459a93228/SOAPy_st-0.1.4-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,958   Found link https://files.pythonhosted.org/packages/36/8c/aad31bbb5ad56da395c7761983c7425dd0fb7556d10d3d9b9491267717b2/SOAPy-st-0.1.5.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.5
2025-01-08T10:02:26,959   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/c9/d8/42a67874b6dae28b6fb7695a3ba9d8e876a2b979836c9ce5bc11542b7ce6/SOAPy_st-0.1.5-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,960   Found link https://files.pythonhosted.org/packages/b1/bc/b92228426416290c0fbf49acfe19da61a1d519170ba73f37a4d40abec2e0/SOAPy-st-0.1.6.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.6
2025-01-08T10:02:26,961   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/3b/75/d09025b4ebab5c67f5099748128897ac2f03fe137394ee68c266e271ddb5/SOAPy_st-0.1.6-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,961   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/1b/e2/988a827aec3aaec819c8ae2818c0c61dece530373490005a31f390559642/SOAPy_st-0.1.7-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,963   Found link https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.7
2025-01-08T10:02:26,963   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/2f/c1/0b0a8d7b79037c1676372acc5ce06a4b1dcc042b9626d3e5aca72486b21a/SOAPy_st-0.1.8-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,964   Found link https://files.pythonhosted.org/packages/45/7c/3466e5548b1b78fc48bc95a8c6494161eed6829b8b6c383290f08b8e7928/SOAPy_st-0.1.8.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.8
2025-01-08T10:02:26,964   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/ab/9a/91323cc4ff8c2275eaef296f45e04b1b1ac767861e18b6f9c105654906e1/SOAPy_st-0.1.9-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:26,965   Found link https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.9
2025-01-08T10:02:26,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/soapy-st/
2025-01-08T10:02:26,967 Getting page https://www.piwheels.org/simple/soapy-st/
2025-01-08T10:02:26,968 Found index url https://www.piwheels.org/simple/
2025-01-08T10:02:27,129 Fetched page https://www.piwheels.org/simple/soapy-st/ as text/html
2025-01-08T10:02:27,130   Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.8-py3-none-any.whl#sha256=c1fb983304577e31d63e54f65b05881f4550388b457dfec56875ecc4ca45e3ae (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:27,131   Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.7-py3-none-any.whl#sha256=47ef0b65f7e6470511a5ef5fd5fe2a052d619946cfd5235ced410e7a90a41e1e (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-08T10:02:27,132 Skipping link: not a file: https://www.piwheels.org/simple/soapy-st/
2025-01-08T10:02:27,132 Skipping link: not a file: https://pypi.org/simple/soapy-st/
2025-01-08T10:02:27,152 Given no hashes to check 1 links for project 'soapy-st': discarding no candidates
2025-01-08T10:02:27,154 Collecting soapy-st==0.1.9
2025-01-08T10:02:27,157   Created temporary directory: /tmp/pip-unpack-24jccx5d
2025-01-08T10:02:27,372   Downloading SOAPy_st-0.1.9.tar.gz (218 kB)
2025-01-08T10:02:27,610   Added soapy-st==0.1.9 from https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-ay3n7y_m'
2025-01-08T10:02:27,612   Running setup.py (path:/tmp/pip-wheel-ityshem3/soapy-st_be6118ddfe844489b7055aebd5cb2734/setup.py) egg_info for package soapy-st
2025-01-08T10:02:27,613   Created temporary directory: /tmp/pip-pip-egg-info-d_ampgwg
2025-01-08T10:02:27,613   Preparing metadata (setup.py): started
2025-01-08T10:02:27,615   Running command python setup.py egg_info
2025-01-08T10:02:28,177   /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-ityshem3/soapy-st_be6118ddfe844489b7055aebd5cb2734/Readme.md' cannot be found
2025-01-08T10:02:28,177     return '\n'.join(
2025-01-08T10:02:28,760   running egg_info
2025-01-08T10:02:28,786   creating /tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info
2025-01-08T10:02:28,788   writing /tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/PKG-INFO
2025-01-08T10:02:28,791   writing dependency_links to /tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/dependency_links.txt
2025-01-08T10:02:28,794   writing requirements to /tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/requires.txt
2025-01-08T10:02:28,795   writing top-level names to /tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/top_level.txt
2025-01-08T10:02:28,797   writing manifest file '/tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/SOURCES.txt'
2025-01-08T10:02:28,896   reading manifest file '/tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/SOURCES.txt'
2025-01-08T10:02:28,898   reading manifest template 'MANIFEST.in'
2025-01-08T10:02:28,900   adding license file 'LICENSE.md'
2025-01-08T10:02:28,904   writing manifest file '/tmp/pip-pip-egg-info-d_ampgwg/SOAPy_st.egg-info/SOURCES.txt'
2025-01-08T10:02:29,013   Preparing metadata (setup.py): finished with status 'done'
2025-01-08T10:02:29,017   Source in /tmp/pip-wheel-ityshem3/soapy-st_be6118ddfe844489b7055aebd5cb2734 has version 0.1.9, which satisfies requirement soapy-st==0.1.9 from https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz
2025-01-08T10:02:29,018   Removed soapy-st==0.1.9 from https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-ay3n7y_m'
2025-01-08T10:02:29,030 Created temporary directory: /tmp/pip-unpack-_rvf92ee
2025-01-08T10:02:29,031 Created temporary directory: /tmp/pip-unpack-7tmwrz60
2025-01-08T10:02:29,032 Building wheels for collected packages: soapy-st
2025-01-08T10:02:29,036   Created temporary directory: /tmp/pip-wheel-n7xr79g0
2025-01-08T10:02:29,036   Building wheel for soapy-st (setup.py): started
2025-01-08T10:02:29,037   Destination directory: /tmp/pip-wheel-n7xr79g0
2025-01-08T10:02:29,038   Running command python setup.py bdist_wheel
2025-01-08T10:02:29,564   /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-ityshem3/soapy-st_be6118ddfe844489b7055aebd5cb2734/Readme.md' cannot be found
2025-01-08T10:02:29,564     return '\n'.join(
2025-01-08T10:02:30,119   running bdist_wheel
2025-01-08T10:02:30,249   running build
2025-01-08T10:02:30,250   running build_py
2025-01-08T10:02:30,281   creating build/lib/SOAPy_st
2025-01-08T10:02:30,283   copying SOAPy_st/_docs.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,284   copying SOAPy_st/_compat.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,286   copying SOAPy_st/__init__.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,289   copying SOAPy_st/_metadata.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,291   copying SOAPy_st/_settings.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,293   copying SOAPy_st/utils.py -> build/lib/SOAPy_st
2025-01-08T10:02:30,297   creating build/lib/SOAPy_st/pl
2025-01-08T10:02:30,298   copying SOAPy_st/pl/_niche.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,300   copying SOAPy_st/pl/_ccc.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,303   copying SOAPy_st/pl/__init__.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,305   copying SOAPy_st/pl/_tensor.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,307   copying SOAPy_st/pl/_heatmap.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,310   copying SOAPy_st/pl/_neighborhood.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,312   copying SOAPy_st/pl/_show.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,315   copying SOAPy_st/pl/_tendency.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,317   copying SOAPy_st/pl/utils.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,319   copying SOAPy_st/pl/_chord.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,321   copying SOAPy_st/pl/_color.py -> build/lib/SOAPy_st/pl
2025-01-08T10:02:30,324   creating build/lib/SOAPy_st/tl
2025-01-08T10:02:30,325   copying SOAPy_st/tl/_domain.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,328   copying SOAPy_st/tl/_ccc.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,331   copying SOAPy_st/tl/__init__.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,333   copying SOAPy_st/tl/_tensor.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,335   copying SOAPy_st/tl/_interaction.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,338   copying SOAPy_st/tl/_mask.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,341   copying SOAPy_st/tl/_var_genes.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,343   copying SOAPy_st/tl/_tendency.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,346   copying SOAPy_st/tl/utils.py -> build/lib/SOAPy_st/tl
2025-01-08T10:02:30,349   creating build/lib/SOAPy_st/pp
2025-01-08T10:02:30,350   copying SOAPy_st/pp/__init__.py -> build/lib/SOAPy_st/pp
2025-01-08T10:02:30,352   copying SOAPy_st/pp/all2adata.py -> build/lib/SOAPy_st/pp
2025-01-08T10:02:30,354   copying SOAPy_st/pp/build_network.py -> build/lib/SOAPy_st/pp
2025-01-08T10:02:30,356   copying SOAPy_st/pp/utils.py -> build/lib/SOAPy_st/pp
2025-01-08T10:02:30,359   creating build/lib/SOAPy_st/tl/other_package_without_pip
2025-01-08T10:02:30,360   copying SOAPy_st/tl/other_package_without_pip/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip
2025-01-08T10:02:30,362   creating build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,363   copying SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,366   copying SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,368   copying SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,370   copying SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,372   copying SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,375   creating build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,377   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,379   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,381   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,383   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,385   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,387   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-08T10:02:30,389   copying SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-08T10:02:30,391   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,393   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,395   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,396   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,398   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,400   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,402   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,404   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,406   copying SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,407   copying SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,409   running egg_info
2025-01-08T10:02:30,439   writing SOAPy_st.egg-info/PKG-INFO
2025-01-08T10:02:30,442   writing dependency_links to SOAPy_st.egg-info/dependency_links.txt
2025-01-08T10:02:30,444   writing requirements to SOAPy_st.egg-info/requires.txt
2025-01-08T10:02:30,445   writing top-level names to SOAPy_st.egg-info/top_level.txt
2025-01-08T10:02:30,486   reading manifest file 'SOAPy_st.egg-info/SOURCES.txt'
2025-01-08T10:02:30,491   reading manifest template 'MANIFEST.in'
2025-01-08T10:02:30,493   adding license file 'LICENSE.md'
2025-01-08T10:02:30,498   writing manifest file 'SOAPy_st.egg-info/SOURCES.txt'
2025-01-08T10:02:30,501   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SOAPy_st.tl.datasets' is absent from the `packages` configuration.
2025-01-08T10:02:30,501   !!

2025-01-08T10:02:30,502           ********************************************************************************
2025-01-08T10:02:30,503           ############################
2025-01-08T10:02:30,504           # Package would be ignored #
2025-01-08T10:02:30,504           ############################
2025-01-08T10:02:30,505           Python recognizes 'SOAPy_st.tl.datasets' as an importable package[^1],
2025-01-08T10:02:30,506           but it is absent from setuptools' `packages` configuration.

2025-01-08T10:02:30,507           This leads to an ambiguous overall configuration. If you want to distribute this
2025-01-08T10:02:30,508           package, please make sure that 'SOAPy_st.tl.datasets' is explicitly added
2025-01-08T10:02:30,508           to the `packages` configuration field.

2025-01-08T10:02:30,510           Alternatively, you can also rely on setuptools' discovery methods
2025-01-08T10:02:30,511           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-01-08T10:02:30,511           instead of `find_packages(...)`/`find:`).

2025-01-08T10:02:30,513           You can read more about "package discovery" on setuptools documentation page:

2025-01-08T10:02:30,514           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-01-08T10:02:30,516           If you don't want 'SOAPy_st.tl.datasets' to be distributed and are
2025-01-08T10:02:30,517           already explicitly excluding 'SOAPy_st.tl.datasets' via
2025-01-08T10:02:30,518           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-01-08T10:02:30,546           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-01-08T10:02:30,551           combination with a more fine grained `package-data` configuration.

2025-01-08T10:02:30,553           You can read more about "package data files" on setuptools documentation page:

2025-01-08T10:02:30,555           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-01-08T10:02:30,559           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-01-08T10:02:30,560                 even if it does not contain any `.py` files.
2025-01-08T10:02:30,561                 On the other hand, currently there is no concept of package data
2025-01-08T10:02:30,565                 directory, all directories are treated like packages.
2025-01-08T10:02:30,578           ********************************************************************************

2025-01-08T10:02:30,580   !!
2025-01-08T10:02:30,580     check.warn(importable)
2025-01-08T10:02:30,581   creating build/lib/SOAPy_st/tl/datasets
2025-01-08T10:02:30,581   copying SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets
2025-01-08T10:02:30,582   copying SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets
2025-01-08T10:02:30,613   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-08T10:02:30,613   !!

2025-01-08T10:02:30,614           ********************************************************************************
2025-01-08T10:02:30,615           Please avoid running ``setup.py`` directly.
2025-01-08T10:02:30,615           Instead, use pypa/build, pypa/installer or other
2025-01-08T10:02:30,616           standards-based tools.

2025-01-08T10:02:30,617           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-08T10:02:30,617           ********************************************************************************

2025-01-08T10:02:30,618   !!
2025-01-08T10:02:30,618     self.initialize_options()
2025-01-08T10:02:30,641   installing to build/bdist.linux-armv7l/wheel
2025-01-08T10:02:30,642   running install
2025-01-08T10:02:30,667   running install_lib
2025-01-08T10:02:30,695   creating build/bdist.linux-armv7l/wheel
2025-01-08T10:02:30,697   creating build/bdist.linux-armv7l/wheel/SOAPy_st
2025-01-08T10:02:30,698   copying build/lib/SOAPy_st/_docs.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,699   copying build/lib/SOAPy_st/_compat.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,702   creating build/bdist.linux-armv7l/wheel/SOAPy_st/pl
2025-01-08T10:02:30,703   copying build/lib/SOAPy_st/pl/_niche.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,706   copying build/lib/SOAPy_st/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,709   copying build/lib/SOAPy_st/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,711   copying build/lib/SOAPy_st/pl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,713   copying build/lib/SOAPy_st/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,715   copying build/lib/SOAPy_st/pl/_neighborhood.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,717   copying build/lib/SOAPy_st/pl/_show.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,720   copying build/lib/SOAPy_st/pl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,722   copying build/lib/SOAPy_st/pl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,724   copying build/lib/SOAPy_st/pl/_chord.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,726   copying build/lib/SOAPy_st/pl/_color.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-08T10:02:30,728   copying build/lib/SOAPy_st/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,730   copying build/lib/SOAPy_st/_metadata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,732   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl
2025-01-08T10:02:30,734   copying build/lib/SOAPy_st/tl/_domain.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,736   copying build/lib/SOAPy_st/tl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,739   copying build/lib/SOAPy_st/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,741   copying build/lib/SOAPy_st/tl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,743   copying build/lib/SOAPy_st/tl/_interaction.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,751   copying build/lib/SOAPy_st/tl/_mask.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,754   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/datasets
2025-01-08T10:02:30,755   copying build/lib/SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets
2025-01-08T10:02:30,765   copying build/lib/SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets
2025-01-08T10:02:30,774   copying build/lib/SOAPy_st/tl/_var_genes.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,776   copying build/lib/SOAPy_st/tl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,784   copying build/lib/SOAPy_st/tl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-08T10:02:30,787   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip
2025-01-08T10:02:30,788   copying build/lib/SOAPy_st/tl/other_package_without_pip/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip
2025-01-08T10:02:30,791   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,792   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,795   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,797   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,799   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,802   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-08T10:02:30,804   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,806   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,809   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,811   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,813   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,815   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-08T10:02:30,818   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-08T10:02:30,820   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit
2025-01-08T10:02:30,823   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,824   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,826   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,829   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,831   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,833   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,835   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-08T10:02:30,838   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,839   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,841   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-08T10:02:30,843   copying build/lib/SOAPy_st/_settings.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,847   creating build/bdist.linux-armv7l/wheel/SOAPy_st/pp
2025-01-08T10:02:30,848   copying build/lib/SOAPy_st/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-08T10:02:30,850   copying build/lib/SOAPy_st/pp/all2adata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-08T10:02:30,853   copying build/lib/SOAPy_st/pp/build_network.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-08T10:02:30,855   copying build/lib/SOAPy_st/pp/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-08T10:02:30,858   copying build/lib/SOAPy_st/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-08T10:02:30,860   running install_egg_info
2025-01-08T10:02:30,893   Copying SOAPy_st.egg-info to build/bdist.linux-armv7l/wheel/./SOAPy_st-0.1.9-py3.11.egg-info
2025-01-08T10:02:30,902   running install_scripts
2025-01-08T10:02:30,924   creating build/bdist.linux-armv7l/wheel/SOAPy_st-0.1.9.dist-info/WHEEL
2025-01-08T10:02:30,926   creating '/tmp/pip-wheel-n7xr79g0/SOAPy_st-0.1.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-08T10:02:30,929   adding 'SOAPy_st/__init__.py'
2025-01-08T10:02:30,931   adding 'SOAPy_st/_compat.py'
2025-01-08T10:02:30,932   adding 'SOAPy_st/_docs.py'
2025-01-08T10:02:30,934   adding 'SOAPy_st/_metadata.py'
2025-01-08T10:02:30,936   adding 'SOAPy_st/_settings.py'
2025-01-08T10:02:30,938   adding 'SOAPy_st/utils.py'
2025-01-08T10:02:30,940   adding 'SOAPy_st/pl/__init__.py'
2025-01-08T10:02:30,944   adding 'SOAPy_st/pl/_ccc.py'
2025-01-08T10:02:30,946   adding 'SOAPy_st/pl/_chord.py'
2025-01-08T10:02:30,948   adding 'SOAPy_st/pl/_color.py'
2025-01-08T10:02:30,950   adding 'SOAPy_st/pl/_heatmap.py'
2025-01-08T10:02:30,952   adding 'SOAPy_st/pl/_neighborhood.py'
2025-01-08T10:02:30,954   adding 'SOAPy_st/pl/_niche.py'
2025-01-08T10:02:30,957   adding 'SOAPy_st/pl/_show.py'
2025-01-08T10:02:30,959   adding 'SOAPy_st/pl/_tendency.py'
2025-01-08T10:02:30,961   adding 'SOAPy_st/pl/_tensor.py'
2025-01-08T10:02:30,963   adding 'SOAPy_st/pl/utils.py'
2025-01-08T10:02:30,965   adding 'SOAPy_st/pp/__init__.py'
2025-01-08T10:02:30,968   adding 'SOAPy_st/pp/all2adata.py'
2025-01-08T10:02:30,970   adding 'SOAPy_st/pp/build_network.py'
2025-01-08T10:02:30,971   adding 'SOAPy_st/pp/utils.py'
2025-01-08T10:02:30,974   adding 'SOAPy_st/tl/__init__.py'
2025-01-08T10:02:30,978   adding 'SOAPy_st/tl/_ccc.py'
2025-01-08T10:02:30,981   adding 'SOAPy_st/tl/_domain.py'
2025-01-08T10:02:30,984   adding 'SOAPy_st/tl/_interaction.py'
2025-01-08T10:02:30,986   adding 'SOAPy_st/tl/_mask.py'
2025-01-08T10:02:30,991   adding 'SOAPy_st/tl/_tendency.py'
2025-01-08T10:02:30,994   adding 'SOAPy_st/tl/_tensor.py'
2025-01-08T10:02:30,996   adding 'SOAPy_st/tl/_var_genes.py'
2025-01-08T10:02:30,998   adding 'SOAPy_st/tl/utils.py'
2025-01-08T10:02:31,031   adding 'SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv'
2025-01-08T10:02:31,068   adding 'SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv'
2025-01-08T10:02:31,073   adding 'SOAPy_st/tl/other_package_without_pip/__init__.py'
2025-01-08T10:02:31,076   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py'
2025-01-08T10:02:31,077   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py'
2025-01-08T10:02:31,079   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/model.py'
2025-01-08T10:02:31,081   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py'
2025-01-08T10:02:31,083   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/utils.py'
2025-01-08T10:02:31,085   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py'
2025-01-08T10:02:31,087   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py'
2025-01-08T10:02:31,088   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py'
2025-01-08T10:02:31,091   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py'
2025-01-08T10:02:31,093   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py'
2025-01-08T10:02:31,094   adding 'SOAPy_st/tl/other_package_without_pip/scanit/__init__.py'
2025-01-08T10:02:31,096   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py'
2025-01-08T10:02:31,098   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py'
2025-01-08T10:02:31,099   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py'
2025-01-08T10:02:31,101   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py'
2025-01-08T10:02:31,103   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py'
2025-01-08T10:02:31,104   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py'
2025-01-08T10:02:31,106   adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py'
2025-01-08T10:02:31,108   adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py'
2025-01-08T10:02:31,115   adding 'SOAPy_st-0.1.9.dist-info/LICENSE.md'
2025-01-08T10:02:31,117   adding 'SOAPy_st-0.1.9.dist-info/METADATA'
2025-01-08T10:02:31,118   adding 'SOAPy_st-0.1.9.dist-info/WHEEL'
2025-01-08T10:02:31,119   adding 'SOAPy_st-0.1.9.dist-info/top_level.txt'
2025-01-08T10:02:31,121   adding 'SOAPy_st-0.1.9.dist-info/RECORD'
2025-01-08T10:02:31,126   removing build/bdist.linux-armv7l/wheel
2025-01-08T10:02:31,253   Building wheel for soapy-st (setup.py): finished with status 'done'
2025-01-08T10:02:31,258   Created wheel for soapy-st: filename=SOAPy_st-0.1.9-py3-none-any.whl size=242914 sha256=7b8969129e28a0bf2c558b21fb2130974232e37ed310398e5e73d9b691398e18
2025-01-08T10:02:31,259   Stored in directory: /tmp/pip-ephem-wheel-cache-gog4f12s/wheels/ed/41/53/278139b385c57d145dc6f7506b8c4492ed0562a3e3f6bc4d5e
2025-01-08T10:02:31,272 Successfully built soapy-st
2025-01-08T10:02:31,282 Removed build tracker: '/tmp/pip-build-tracker-ay3n7y_m'