2025-01-13T12:34:00,446 Created temporary directory: /tmp/pip-build-tracker-if5llxnn 2025-01-13T12:34:00,447 Initialized build tracking at /tmp/pip-build-tracker-if5llxnn 2025-01-13T12:34:00,448 Created build tracker: /tmp/pip-build-tracker-if5llxnn 2025-01-13T12:34:00,448 Entered build tracker: /tmp/pip-build-tracker-if5llxnn 2025-01-13T12:34:00,449 Created temporary directory: /tmp/pip-wheel-paxb61p8 2025-01-13T12:34:00,453 Created temporary directory: /tmp/pip-ephem-wheel-cache-udw6r86y 2025-01-13T12:34:00,496 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-13T12:34:00,499 2 location(s) to search for versions of protenix: 2025-01-13T12:34:00,499 * https://pypi.org/simple/protenix/ 2025-01-13T12:34:00,499 * https://www.piwheels.org/simple/protenix/ 2025-01-13T12:34:00,499 Fetching project page and analyzing links: https://pypi.org/simple/protenix/ 2025-01-13T12:34:00,500 Getting page https://pypi.org/simple/protenix/ 2025-01-13T12:34:00,501 Found index url https://pypi.org/simple/ 2025-01-13T12:34:00,720 Fetched page https://pypi.org/simple/protenix/ as application/vnd.pypi.simple.v1+json 2025-01-13T12:34:00,727 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/a8/ea/bbe375d1a89b5e3cbe5e07e56184e29a7b779f964a8ea910337a0746af5e/Protenix-0.0.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) 2025-01-13T12:34:00,728 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/35/f6/105b3517490c13d23880689ef3b4477d072d117ca4cc6f805bad9ee16391/protenix-0.0.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) 2025-01-13T12:34:00,729 Found link https://files.pythonhosted.org/packages/63/d5/22a2098752b2b8c95f2ced18d38918883aa9a5ac8cee9df5174aadfee19c/protenix-0.0.1.tar.gz (from https://pypi.org/simple/protenix/), version: 0.0.1 2025-01-13T12:34:00,729 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/85/33/10bb83edcf222b7cd05cc94d453ac7edfa86f09c7100db8c62fcc894745c/protenix-0.1.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,730 Found link https://files.pythonhosted.org/packages/d5/61/cdea4397a181ca2b108c6df0aa4c30e7a6fc34c5b75ad69557569c44b61d/protenix-0.1.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.0 2025-01-13T12:34:00,731 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/28/00/2206a6a3a02d45eeb6e16c6ffcacff6789f11489238acd07ad5127219741/protenix-0.1.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,732 Found link https://files.pythonhosted.org/packages/2b/7b/20fe2818e890f5d25a892ba31a24b910d0cf34e9f86b990c042c3f91fd05/protenix-0.1.1.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.1 2025-01-13T12:34:00,733 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/f5/3f/993181bd5478dccf62a5265df701cc9762d257ac04ea6aec26f2e0ec6b0e/protenix-0.1.2-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:<3.12,>=3.10) 2025-01-13T12:34:00,734 Found link https://files.pythonhosted.org/packages/18/ff/8a30b1df6d1bc731a8b4075a077421e306d85976cae82e758a5f15cef4fd/protenix-0.1.2.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:<3.12,>=3.10), version: 0.1.2 2025-01-13T12:34:00,735 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/c3/31/3b2b20aafa4471bcda6389257ad5348c7762374fe725b0552f836dc13ef6/protenix-0.1.3-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,735 Found link https://files.pythonhosted.org/packages/2c/1c/0788760bb4cd6bae9edc74ef1341e9cc74ad6190b8b5dbd972a361184b97/protenix-0.1.3.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.3 2025-01-13T12:34:00,736 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/09/b7/15a72afe3d229492604e5ca7ebed72cd1402068f2d5518e26ebef3f2bb5c/protenix-0.2.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,737 Found link https://files.pythonhosted.org/packages/0f/17/fdc141be77d735ddf3bfba80a660873fa13732b6c77847434b969aa66f51/protenix-0.2.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.2.0 2025-01-13T12:34:00,738 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/99/56/de0a35a125cc0247a366608c8598bdd949ba6068c02fb8d13e8147f65d9c/protenix-0.3.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,739 Found link https://files.pythonhosted.org/packages/b6/96/8d6d036dcaff9c1884fcbaa2c752fed65e24320fab2a0a8b128a615da89d/protenix-0.3.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.0 2025-01-13T12:34:00,740 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/bf/6b/1cb9d8eea4be4973f97bd1f138f6da0711fad309b76b5c977b316c6bc511/protenix-0.3.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,741 Found link https://files.pythonhosted.org/packages/9a/85/b1ec219c8b8a3ba735742164561a917f53e81f11d2a3a9544a206f9ac21b/protenix-0.3.1.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.1 2025-01-13T12:34:00,741 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/6d/11/4c2946b935b56d995c7418cfc783c16e9e647de72a34380c42e573d4b28d/protenix-0.3.2-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,742 Found link https://files.pythonhosted.org/packages/65/48/25fdef4629cd5ce68c65f733fc49388378cacd3658cd76b5e88893ca5227/protenix-0.3.2.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.2 2025-01-13T12:34:00,743 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/c7/93/f19c14b2b49405f326fab9594ffd7252ef0e231cc348d61b5e406408c8cf/protenix-0.3.3-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,743 Found link https://files.pythonhosted.org/packages/83/67/8697c13e89ed881756f1d188346b4e241decea92545f611778baa9273a49/protenix-0.3.3.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.3 2025-01-13T12:34:00,744 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/49/29/b5b7a2e6e0802ba1d6256d774aafcce43d86773202697a4d1ebb7ff3a95a/protenix-0.3.4-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,745 Found link https://files.pythonhosted.org/packages/67/bf/6ccce5f88c48f27559d138e5b4e65170e318a0d97c803c655ba3734f9efd/protenix-0.3.4.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.4 2025-01-13T12:34:00,746 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/22/4e/6387baad87ace43b71024601db621c8adb12645ee898bfdf653ffe0067d5/protenix-0.3.5-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,747 Found link https://files.pythonhosted.org/packages/8e/75/ba5a8e3b5e13eab23909185b11b044e4e3db04ade55485e9d7fe09b6e95e/protenix-0.3.5.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.5 2025-01-13T12:34:00,748 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/13/c0/5653f9f3db2450d9c2508c32bccf1503610ef34da8d8d10921db6a750635/protenix-0.3.6-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,748 Found link https://files.pythonhosted.org/packages/02/16/6482a30fa395df9360f808fe44260a9513abff61efdd75f671a7556028eb/protenix-0.3.6.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.6 2025-01-13T12:34:00,749 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/01/68/a09d38d3fc22f34ba7a914f9863ae9b7f2c77f4bfb8fe275aabd477cffa6/protenix-0.3.7-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,750 Found link https://files.pythonhosted.org/packages/fe/58/241e5813c71a2f8d427f579892c69507b4b132537f332faf24f64ebddbc1/protenix-0.3.7.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.7 2025-01-13T12:34:00,751 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/be/4d/3a2a007bfb6bab07c98ec53180368db69bd656a3ee277a6a962068da3b06/protenix-0.3.8-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,751 Found link https://files.pythonhosted.org/packages/1f/aa/2445a83be220fc2a24fd269f34dfbfa2e5c9d025103712070bfc85d9bb3f/protenix-0.3.8.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.8 2025-01-13T12:34:00,752 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/2e/8c/93ac8551d47bd1189977231ce255647b3b86d727d67c9ed7e756215aea3a/protenix-0.3.9-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,753 Found link https://files.pythonhosted.org/packages/57/c4/d9f0a75ae91d1d017c3a3375a9f65ea08165b9123647f085c9d3f8835e36/protenix-0.3.9.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.9 2025-01-13T12:34:00,753 Fetching project page and analyzing links: https://www.piwheels.org/simple/protenix/ 2025-01-13T12:34:00,754 Getting page https://www.piwheels.org/simple/protenix/ 2025-01-13T12:34:00,755 Found index url https://www.piwheels.org/simple/ 2025-01-13T12:34:00,917 Fetched page https://www.piwheels.org/simple/protenix/ as text/html 2025-01-13T12:34:00,922 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.7-py3-none-any.whl#sha256=879dd062411f30d5ec9abcb895ee06a2acd7c7435135ea457af7d665e7351ed5 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,923 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.6-py3-none-any.whl#sha256=a740708421da6bea03c22fc527e96ec0ce27329a9cfb8adb213d0ad1ec66d031 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,923 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.5-py3-none-any.whl#sha256=3719630079eefd5a0ef318cdb45dae22c0b16dd3c6b29bbfcd3b175aa939770b (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,924 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.4-py3-none-any.whl#sha256=d375e6e6506082ba1ef1e01d816c701e9287af557cb0852c45aea426702f052f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,924 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.3-py3-none-any.whl#sha256=bce00ef75c8d8f408dca3bd0105c8bc555da5e34c8998748544be1bb5f763c02 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,925 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.2-py3-none-any.whl#sha256=0255f130567cda78b0dd7e9e1efee966d489a4302df91f47c2ce7d7c5f9b3400 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,925 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.1-py3-none-any.whl#sha256=624b9eaf9450baa3748fbe7d038a393ab59d36d7b191a70d676d592c81f46d1f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,926 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.0-py3-none-any.whl#sha256=c2af82dfdebc9606f320eb2d0ae308e644cd77922b443dcd59e7f778e756ac45 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,927 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.2.0-py3-none-any.whl#sha256=0de87030b4ba1d9e3c2b67265493001f00eca096d862816f65f818b739c96c6f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,927 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.3-py3-none-any.whl#sha256=be21c60c572799c5562933a71a3087ae1441533805771913e77578fc6280e314 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,928 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.2-py3-none-any.whl#sha256=10909020be81638dbfe8da0ff0bc107ad732dc3dc8e420d09aa3e346c53ac527 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10,<3.12) 2025-01-13T12:34:00,928 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.1-py3-none-any.whl#sha256=aa7a8c0ad8f38f5430cb145bb56675e2b0deb861589bbb05ec6eb09dd95c5f57 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,929 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.0-py3-none-any.whl#sha256=95dd14c125ff66c76135ed8525ede80d6be803880749ec813036bb317ca23e6e (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2025-01-13T12:34:00,929 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/Protenix-0.0.1-py3-none-any.whl#sha256=5b251c54ef00f26ee302a294be031208ca73350e41e88d05368f4146cdb01794 (from https://www.piwheels.org/simple/protenix/) 2025-01-13T12:34:00,930 Skipping link: not a file: https://www.piwheels.org/simple/protenix/ 2025-01-13T12:34:00,930 Skipping link: not a file: https://pypi.org/simple/protenix/ 2025-01-13T12:34:00,949 Given no hashes to check 1 links for project 'protenix': discarding no candidates 2025-01-13T12:34:00,952 Collecting protenix==0.3.8 2025-01-13T12:34:00,954 Created temporary directory: /tmp/pip-unpack-09wo21mw 2025-01-13T12:34:01,173 Downloading protenix-0.3.8.tar.gz (309 kB) 2025-01-13T12:34:01,559 Added protenix==0.3.8 from https://files.pythonhosted.org/packages/1f/aa/2445a83be220fc2a24fd269f34dfbfa2e5c9d025103712070bfc85d9bb3f/protenix-0.3.8.tar.gz to build tracker '/tmp/pip-build-tracker-if5llxnn' 2025-01-13T12:34:01,561 Running setup.py (path:/tmp/pip-wheel-paxb61p8/protenix_7d194d00ef0f4c9ab03a9bfed8f3170b/setup.py) egg_info for package protenix 2025-01-13T12:34:01,562 Created temporary directory: /tmp/pip-pip-egg-info-cg7hg4yg 2025-01-13T12:34:01,562 Preparing metadata (setup.py): started 2025-01-13T12:34:01,563 Running command python setup.py egg_info 2025-01-13T12:34:02,647 running egg_info 2025-01-13T12:34:02,677 creating /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info 2025-01-13T12:34:02,679 writing /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/PKG-INFO 2025-01-13T12:34:02,682 writing dependency_links to /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/dependency_links.txt 2025-01-13T12:34:02,684 writing entry points to /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/entry_points.txt 2025-01-13T12:34:02,686 writing requirements to /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/requires.txt 2025-01-13T12:34:02,687 writing top-level names to /tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/top_level.txt 2025-01-13T12:34:02,689 writing manifest file '/tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/SOURCES.txt' 2025-01-13T12:34:02,805 reading manifest file '/tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/SOURCES.txt' 2025-01-13T12:34:02,806 adding license file 'LICENSE' 2025-01-13T12:34:02,812 writing manifest file '/tmp/pip-pip-egg-info-cg7hg4yg/protenix.egg-info/SOURCES.txt' 2025-01-13T12:34:02,925 Preparing metadata (setup.py): finished with status 'done' 2025-01-13T12:34:02,930 Source in /tmp/pip-wheel-paxb61p8/protenix_7d194d00ef0f4c9ab03a9bfed8f3170b has version 0.3.8, which satisfies requirement protenix==0.3.8 from https://files.pythonhosted.org/packages/1f/aa/2445a83be220fc2a24fd269f34dfbfa2e5c9d025103712070bfc85d9bb3f/protenix-0.3.8.tar.gz 2025-01-13T12:34:02,931 Removed protenix==0.3.8 from https://files.pythonhosted.org/packages/1f/aa/2445a83be220fc2a24fd269f34dfbfa2e5c9d025103712070bfc85d9bb3f/protenix-0.3.8.tar.gz from build tracker '/tmp/pip-build-tracker-if5llxnn' 2025-01-13T12:34:02,940 Created temporary directory: /tmp/pip-unpack-_1xl53_h 2025-01-13T12:34:02,942 Created temporary directory: /tmp/pip-unpack-ujtg2shj 2025-01-13T12:34:02,942 Building wheels for collected packages: protenix 2025-01-13T12:34:02,947 Created temporary directory: /tmp/pip-wheel-sgnyuko2 2025-01-13T12:34:02,948 Building wheel for protenix (setup.py): started 2025-01-13T12:34:02,949 Destination directory: /tmp/pip-wheel-sgnyuko2 2025-01-13T12:34:02,949 Running command python setup.py bdist_wheel 2025-01-13T12:34:03,978 running bdist_wheel 2025-01-13T12:34:04,110 running build 2025-01-13T12:34:04,111 running build_py 2025-01-13T12:34:04,140 creating build/lib/configs 2025-01-13T12:34:04,143 copying configs/configs_data.py -> build/lib/configs 2025-01-13T12:34:04,145 copying configs/configs_inference.py -> build/lib/configs 2025-01-13T12:34:04,147 copying configs/configs_base.py -> build/lib/configs 2025-01-13T12:34:04,150 copying configs/__init__.py -> build/lib/configs 2025-01-13T12:34:04,152 creating build/lib/runner 2025-01-13T12:34:04,153 copying runner/batch_inference.py -> build/lib/runner 2025-01-13T12:34:04,155 copying runner/msa_search.py -> build/lib/runner 2025-01-13T12:34:04,158 copying runner/ema.py -> build/lib/runner 2025-01-13T12:34:04,160 copying runner/train.py -> build/lib/runner 2025-01-13T12:34:04,162 copying runner/dumper.py -> build/lib/runner 2025-01-13T12:34:04,165 copying runner/__init__.py -> build/lib/runner 2025-01-13T12:34:04,166 copying runner/inference.py -> build/lib/runner 2025-01-13T12:34:04,169 creating build/lib/protenix 2025-01-13T12:34:04,170 copying protenix/__init__.py -> build/lib/protenix 2025-01-13T12:34:04,172 creating build/lib/protenix/metrics 2025-01-13T12:34:04,173 copying protenix/metrics/rmsd.py -> build/lib/protenix/metrics 2025-01-13T12:34:04,176 copying protenix/metrics/lddt_metrics.py -> build/lib/protenix/metrics 2025-01-13T12:34:04,179 copying protenix/metrics/clash.py -> build/lib/protenix/metrics 2025-01-13T12:34:04,181 copying protenix/metrics/__init__.py -> build/lib/protenix/metrics 2025-01-13T12:34:04,183 creating build/lib/protenix/config 2025-01-13T12:34:04,184 copying protenix/config/extend_types.py -> build/lib/protenix/config 2025-01-13T12:34:04,186 copying protenix/config/config.py -> build/lib/protenix/config 2025-01-13T12:34:04,188 copying protenix/config/__init__.py -> build/lib/protenix/config 2025-01-13T12:34:04,191 creating build/lib/protenix/openfold_local 2025-01-13T12:34:04,192 copying protenix/openfold_local/__init__.py -> build/lib/protenix/openfold_local 2025-01-13T12:34:04,194 creating build/lib/protenix/utils 2025-01-13T12:34:04,195 copying protenix/utils/torch_utils.py -> build/lib/protenix/utils 2025-01-13T12:34:04,198 copying protenix/utils/file_io.py -> build/lib/protenix/utils 2025-01-13T12:34:04,200 copying protenix/utils/training.py -> build/lib/protenix/utils 2025-01-13T12:34:04,202 copying protenix/utils/scatter_utils.py -> build/lib/protenix/utils 2025-01-13T12:34:04,204 copying protenix/utils/lr_scheduler.py -> build/lib/protenix/utils 2025-01-13T12:34:04,207 copying protenix/utils/cropping.py -> build/lib/protenix/utils 2025-01-13T12:34:04,210 copying protenix/utils/metrics.py -> build/lib/protenix/utils 2025-01-13T12:34:04,212 copying protenix/utils/distributed.py -> build/lib/protenix/utils 2025-01-13T12:34:04,214 copying protenix/utils/geometry.py -> build/lib/protenix/utils 2025-01-13T12:34:04,216 copying protenix/utils/__init__.py -> build/lib/protenix/utils 2025-01-13T12:34:04,217 copying protenix/utils/seed.py -> build/lib/protenix/utils 2025-01-13T12:34:04,219 copying protenix/utils/logger.py -> build/lib/protenix/utils 2025-01-13T12:34:04,222 creating build/lib/protenix/data 2025-01-13T12:34:04,223 copying protenix/data/featurizer.py -> build/lib/protenix/data 2025-01-13T12:34:04,226 copying protenix/data/substructure_perms.py -> build/lib/protenix/data 2025-01-13T12:34:04,228 copying protenix/data/infer_data_pipeline.py -> build/lib/protenix/data 2025-01-13T12:34:04,230 copying protenix/data/msa_utils.py -> build/lib/protenix/data 2025-01-13T12:34:04,233 copying protenix/data/json_parser.py -> build/lib/protenix/data 2025-01-13T12:34:04,235 copying protenix/data/tokenizer.py -> build/lib/protenix/data 2025-01-13T12:34:04,238 copying protenix/data/dataset.py -> build/lib/protenix/data 2025-01-13T12:34:04,241 copying protenix/data/data_pipeline.py -> build/lib/protenix/data 2025-01-13T12:34:04,243 copying protenix/data/dataloader.py -> build/lib/protenix/data 2025-01-13T12:34:04,246 copying protenix/data/constants.py -> build/lib/protenix/data 2025-01-13T12:34:04,249 copying protenix/data/json_maker.py -> build/lib/protenix/data 2025-01-13T12:34:04,251 copying protenix/data/parser.py -> build/lib/protenix/data 2025-01-13T12:34:04,254 copying protenix/data/json_to_feature.py -> build/lib/protenix/data 2025-01-13T12:34:04,257 copying protenix/data/filter.py -> build/lib/protenix/data 2025-01-13T12:34:04,259 copying protenix/data/utils.py -> build/lib/protenix/data 2025-01-13T12:34:04,262 copying protenix/data/ccd.py -> build/lib/protenix/data 2025-01-13T12:34:04,264 copying protenix/data/__init__.py -> build/lib/protenix/data 2025-01-13T12:34:04,266 copying protenix/data/msa_featurizer.py -> build/lib/protenix/data 2025-01-13T12:34:04,270 creating build/lib/protenix/model 2025-01-13T12:34:04,271 copying protenix/model/sample_confidence.py -> build/lib/protenix/model 2025-01-13T12:34:04,273 copying protenix/model/loss.py -> build/lib/protenix/model 2025-01-13T12:34:04,278 copying protenix/model/protenix.py -> build/lib/protenix/model 2025-01-13T12:34:04,281 copying protenix/model/utils.py -> build/lib/protenix/model 2025-01-13T12:34:04,283 copying protenix/model/__init__.py -> build/lib/protenix/model 2025-01-13T12:34:04,285 copying protenix/model/generator.py -> build/lib/protenix/model 2025-01-13T12:34:04,288 creating build/lib/protenix/web_service 2025-01-13T12:34:04,290 copying protenix/web_service/dependency_url.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,292 copying protenix/web_service/viewer.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,295 copying protenix/web_service/prediction_visualization.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,297 copying protenix/web_service/colab_request_parser.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,300 copying protenix/web_service/__init__.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,301 copying protenix/web_service/colab_request_utils.py -> build/lib/protenix/web_service 2025-01-13T12:34:04,304 creating build/lib/protenix/openfold_local/np 2025-01-13T12:34:04,305 copying protenix/openfold_local/np/__init__.py -> build/lib/protenix/openfold_local/np 2025-01-13T12:34:04,307 copying protenix/openfold_local/np/residue_constants.py -> build/lib/protenix/openfold_local/np 2025-01-13T12:34:04,310 creating build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,311 copying protenix/openfold_local/utils/feats.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,314 copying protenix/openfold_local/utils/chunk_utils.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,316 copying protenix/openfold_local/utils/precision_utils.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,318 copying protenix/openfold_local/utils/checkpointing.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,320 copying protenix/openfold_local/utils/rigid_utils.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,323 copying protenix/openfold_local/utils/tensor_utils.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,325 copying protenix/openfold_local/utils/__init__.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,327 copying protenix/openfold_local/utils/all_atom_multimer.py -> build/lib/protenix/openfold_local/utils 2025-01-13T12:34:04,330 creating build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,331 copying protenix/openfold_local/data/templates.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,334 copying protenix/openfold_local/data/errors.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,336 copying protenix/openfold_local/data/mmcif_parsing.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,338 copying protenix/openfold_local/data/msa_pairing.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,341 copying protenix/openfold_local/data/parsers.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,344 copying protenix/openfold_local/data/msa_identifiers.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,346 copying protenix/openfold_local/data/__init__.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,347 copying protenix/openfold_local/data/data_transforms.py -> build/lib/protenix/openfold_local/data 2025-01-13T12:34:04,350 creating build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,351 copying protenix/openfold_local/model/outer_product_mean.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,353 copying protenix/openfold_local/model/primitives.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,356 copying protenix/openfold_local/model/triangular_multiplicative_update.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,359 copying protenix/openfold_local/model/dropout.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,361 copying protenix/openfold_local/model/__init__.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,362 copying protenix/openfold_local/model/triangular_attention.py -> build/lib/protenix/openfold_local/model 2025-01-13T12:34:04,365 creating build/lib/protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,366 copying protenix/openfold_local/utils/kernel/attention_core.py -> build/lib/protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,368 copying protenix/openfold_local/utils/kernel/__init__.py -> build/lib/protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,371 creating build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,372 copying protenix/openfold_local/utils/geometry/rigid_matrix_vector.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,374 copying protenix/openfold_local/utils/geometry/rotation_matrix.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,377 copying protenix/openfold_local/utils/geometry/test_utils.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,379 copying protenix/openfold_local/utils/geometry/utils.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,381 copying protenix/openfold_local/utils/geometry/__init__.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,383 copying protenix/openfold_local/utils/geometry/vector.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,385 copying protenix/openfold_local/utils/geometry/quat_rigid.py -> build/lib/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,388 creating build/lib/protenix/openfold_local/data/tools 2025-01-13T12:34:04,389 copying protenix/openfold_local/data/tools/jackhmmer.py -> build/lib/protenix/openfold_local/data/tools 2025-01-13T12:34:04,392 copying protenix/openfold_local/data/tools/utils.py -> build/lib/protenix/openfold_local/data/tools 2025-01-13T12:34:04,394 copying protenix/openfold_local/data/tools/__init__.py -> build/lib/protenix/openfold_local/data/tools 2025-01-13T12:34:04,395 creating build/lib/protenix/utils/permutation 2025-01-13T12:34:04,397 copying protenix/utils/permutation/atom_permutation.py -> build/lib/protenix/utils/permutation 2025-01-13T12:34:04,399 copying protenix/utils/permutation/permutation.py -> build/lib/protenix/utils/permutation 2025-01-13T12:34:04,402 copying protenix/utils/permutation/utils.py -> build/lib/protenix/utils/permutation 2025-01-13T12:34:04,404 copying protenix/utils/permutation/__init__.py -> build/lib/protenix/utils/permutation 2025-01-13T12:34:04,406 creating build/lib/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,407 copying protenix/utils/permutation/chain_permutation/pocket_based_permutation.py -> build/lib/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,410 copying protenix/utils/permutation/chain_permutation/utils.py -> build/lib/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,412 copying protenix/utils/permutation/chain_permutation/__init__.py -> build/lib/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,414 copying protenix/utils/permutation/chain_permutation/heuristic.py -> build/lib/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,417 creating build/lib/protenix/model/layer_norm 2025-01-13T12:34:04,419 copying protenix/model/layer_norm/torch_ext_compile.py -> build/lib/protenix/model/layer_norm 2025-01-13T12:34:04,421 copying protenix/model/layer_norm/layer_norm.py -> build/lib/protenix/model/layer_norm 2025-01-13T12:34:04,423 copying protenix/model/layer_norm/__init__.py -> build/lib/protenix/model/layer_norm 2025-01-13T12:34:04,426 creating build/lib/protenix/model/modules 2025-01-13T12:34:04,427 copying protenix/model/modules/embedders.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,429 copying protenix/model/modules/pairformer.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,432 copying protenix/model/modules/transformer.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,435 copying protenix/model/modules/primitives.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,438 copying protenix/model/modules/frames.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,440 copying protenix/model/modules/diffusion.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,443 copying protenix/model/modules/head.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,445 copying protenix/model/modules/__init__.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,447 copying protenix/model/modules/confidence.py -> build/lib/protenix/model/modules 2025-01-13T12:34:04,449 running egg_info 2025-01-13T12:34:04,480 writing protenix.egg-info/PKG-INFO 2025-01-13T12:34:04,483 writing dependency_links to protenix.egg-info/dependency_links.txt 2025-01-13T12:34:04,484 writing entry points to protenix.egg-info/entry_points.txt 2025-01-13T12:34:04,486 writing requirements to protenix.egg-info/requires.txt 2025-01-13T12:34:04,487 writing top-level names to protenix.egg-info/top_level.txt 2025-01-13T12:34:04,536 reading manifest file 'protenix.egg-info/SOURCES.txt' 2025-01-13T12:34:04,544 adding license file 'LICENSE' 2025-01-13T12:34:04,552 writing manifest file 'protenix.egg-info/SOURCES.txt' 2025-01-13T12:34:04,555 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'protenix.model.layer_norm.kernel' is absent from the `packages` configuration. 2025-01-13T12:34:04,556 !! 2025-01-13T12:34:04,558 ******************************************************************************** 2025-01-13T12:34:04,558 ############################ 2025-01-13T12:34:04,559 # Package would be ignored # 2025-01-13T12:34:04,559 ############################ 2025-01-13T12:34:04,560 Python recognizes 'protenix.model.layer_norm.kernel' as an importable package[^1], 2025-01-13T12:34:04,561 but it is absent from setuptools' `packages` configuration. 2025-01-13T12:34:04,562 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-13T12:34:04,562 package, please make sure that 'protenix.model.layer_norm.kernel' is explicitly added 2025-01-13T12:34:04,563 to the `packages` configuration field. 2025-01-13T12:34:04,563 Alternatively, you can also rely on setuptools' discovery methods 2025-01-13T12:34:04,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-13T12:34:04,564 instead of `find_packages(...)`/`find:`). 2025-01-13T12:34:04,565 You can read more about "package discovery" on setuptools documentation page: 2025-01-13T12:34:04,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-13T12:34:04,567 If you don't want 'protenix.model.layer_norm.kernel' to be distributed and are 2025-01-13T12:34:04,567 already explicitly excluding 'protenix.model.layer_norm.kernel' via 2025-01-13T12:34:04,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-13T12:34:04,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-13T12:34:04,569 combination with a more fine grained `package-data` configuration. 2025-01-13T12:34:04,569 You can read more about "package data files" on setuptools documentation page: 2025-01-13T12:34:04,570 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-13T12:34:04,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-13T12:34:04,573 even if it does not contain any `.py` files. 2025-01-13T12:34:04,573 On the other hand, currently there is no concept of package data 2025-01-13T12:34:04,574 directory, all directories are treated like packages. 2025-01-13T12:34:04,574 ******************************************************************************** 2025-01-13T12:34:04,575 !! 2025-01-13T12:34:04,576 check.warn(importable) 2025-01-13T12:34:04,577 creating build/lib/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,577 copying protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu -> build/lib/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,578 copying protenix/model/layer_norm/kernel/type_shim.h -> build/lib/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,580 copying protenix/model/layer_norm/kernel/compat.h -> build/lib/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,582 copying protenix/model/layer_norm/kernel/layer_norm_cuda.cpp -> build/lib/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,624 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-13T12:34:04,624 !! 2025-01-13T12:34:04,625 ******************************************************************************** 2025-01-13T12:34:04,626 Please avoid running ``setup.py`` directly. 2025-01-13T12:34:04,626 Instead, use pypa/build, pypa/installer or other 2025-01-13T12:34:04,627 standards-based tools. 2025-01-13T12:34:04,628 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-13T12:34:04,629 ******************************************************************************** 2025-01-13T12:34:04,630 !! 2025-01-13T12:34:04,631 self.initialize_options() 2025-01-13T12:34:04,653 installing to build/bdist.linux-armv7l/wheel 2025-01-13T12:34:04,653 running install 2025-01-13T12:34:04,679 running install_lib 2025-01-13T12:34:04,706 creating build/bdist.linux-armv7l/wheel 2025-01-13T12:34:04,709 creating build/bdist.linux-armv7l/wheel/configs 2025-01-13T12:34:04,710 copying build/lib/configs/configs_data.py -> build/bdist.linux-armv7l/wheel/./configs 2025-01-13T12:34:04,713 copying build/lib/configs/configs_inference.py -> build/bdist.linux-armv7l/wheel/./configs 2025-01-13T12:34:04,714 copying build/lib/configs/configs_base.py -> build/bdist.linux-armv7l/wheel/./configs 2025-01-13T12:34:04,717 copying build/lib/configs/__init__.py -> build/bdist.linux-armv7l/wheel/./configs 2025-01-13T12:34:04,719 creating build/bdist.linux-armv7l/wheel/runner 2025-01-13T12:34:04,720 copying build/lib/runner/batch_inference.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,723 copying build/lib/runner/msa_search.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,725 copying build/lib/runner/ema.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,726 copying build/lib/runner/train.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,729 copying build/lib/runner/dumper.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,731 copying build/lib/runner/__init__.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,733 copying build/lib/runner/inference.py -> build/bdist.linux-armv7l/wheel/./runner 2025-01-13T12:34:04,736 creating build/bdist.linux-armv7l/wheel/protenix 2025-01-13T12:34:04,738 creating build/bdist.linux-armv7l/wheel/protenix/metrics 2025-01-13T12:34:04,740 copying build/lib/protenix/metrics/rmsd.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2025-01-13T12:34:04,743 copying build/lib/protenix/metrics/lddt_metrics.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2025-01-13T12:34:04,745 copying build/lib/protenix/metrics/clash.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2025-01-13T12:34:04,748 copying build/lib/protenix/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2025-01-13T12:34:04,750 creating build/bdist.linux-armv7l/wheel/protenix/config 2025-01-13T12:34:04,752 copying build/lib/protenix/config/extend_types.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2025-01-13T12:34:04,754 copying build/lib/protenix/config/config.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2025-01-13T12:34:04,757 copying build/lib/protenix/config/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2025-01-13T12:34:04,759 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local 2025-01-13T12:34:04,761 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/np 2025-01-13T12:34:04,763 copying build/lib/protenix/openfold_local/np/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/np 2025-01-13T12:34:04,765 copying build/lib/protenix/openfold_local/np/residue_constants.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/np 2025-01-13T12:34:04,769 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils 2025-01-13T12:34:04,771 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,773 copying build/lib/protenix/openfold_local/utils/kernel/attention_core.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,775 copying build/lib/protenix/openfold_local/utils/kernel/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/kernel 2025-01-13T12:34:04,778 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,779 copying build/lib/protenix/openfold_local/utils/geometry/rigid_matrix_vector.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,782 copying build/lib/protenix/openfold_local/utils/geometry/rotation_matrix.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,785 copying build/lib/protenix/openfold_local/utils/geometry/test_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,787 copying build/lib/protenix/openfold_local/utils/geometry/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,789 copying build/lib/protenix/openfold_local/utils/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,792 copying build/lib/protenix/openfold_local/utils/geometry/vector.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,794 copying build/lib/protenix/openfold_local/utils/geometry/quat_rigid.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2025-01-13T12:34:04,797 copying build/lib/protenix/openfold_local/utils/feats.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,799 copying build/lib/protenix/openfold_local/utils/chunk_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,801 copying build/lib/protenix/openfold_local/utils/precision_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,803 copying build/lib/protenix/openfold_local/utils/checkpointing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,805 copying build/lib/protenix/openfold_local/utils/rigid_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,808 copying build/lib/protenix/openfold_local/utils/tensor_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,810 copying build/lib/protenix/openfold_local/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,811 copying build/lib/protenix/openfold_local/utils/all_atom_multimer.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2025-01-13T12:34:04,814 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/data 2025-01-13T12:34:04,815 copying build/lib/protenix/openfold_local/data/templates.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,818 copying build/lib/protenix/openfold_local/data/errors.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,820 copying build/lib/protenix/openfold_local/data/mmcif_parsing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,823 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/data/tools 2025-01-13T12:34:04,824 copying build/lib/protenix/openfold_local/data/tools/jackhmmer.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2025-01-13T12:34:04,827 copying build/lib/protenix/openfold_local/data/tools/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2025-01-13T12:34:04,829 copying build/lib/protenix/openfold_local/data/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2025-01-13T12:34:04,830 copying build/lib/protenix/openfold_local/data/msa_pairing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,833 copying build/lib/protenix/openfold_local/data/parsers.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,836 copying build/lib/protenix/openfold_local/data/msa_identifiers.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,838 copying build/lib/protenix/openfold_local/data/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,840 copying build/lib/protenix/openfold_local/data/data_transforms.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2025-01-13T12:34:04,843 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/model 2025-01-13T12:34:04,844 copying build/lib/protenix/openfold_local/model/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,846 copying build/lib/protenix/openfold_local/model/primitives.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,850 copying build/lib/protenix/openfold_local/model/triangular_multiplicative_update.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,853 copying build/lib/protenix/openfold_local/model/dropout.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,855 copying build/lib/protenix/openfold_local/model/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,857 copying build/lib/protenix/openfold_local/model/triangular_attention.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2025-01-13T12:34:04,859 copying build/lib/protenix/openfold_local/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local 2025-01-13T12:34:04,862 creating build/bdist.linux-armv7l/wheel/protenix/utils 2025-01-13T12:34:04,863 copying build/lib/protenix/utils/torch_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,865 copying build/lib/protenix/utils/file_io.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,867 copying build/lib/protenix/utils/training.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,869 copying build/lib/protenix/utils/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,871 copying build/lib/protenix/utils/lr_scheduler.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,873 copying build/lib/protenix/utils/cropping.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,876 copying build/lib/protenix/utils/metrics.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,879 creating build/bdist.linux-armv7l/wheel/protenix/utils/permutation 2025-01-13T12:34:04,881 creating build/bdist.linux-armv7l/wheel/protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,882 copying build/lib/protenix/utils/permutation/chain_permutation/pocket_based_permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,885 copying build/lib/protenix/utils/permutation/chain_permutation/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,887 copying build/lib/protenix/utils/permutation/chain_permutation/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,889 copying build/lib/protenix/utils/permutation/chain_permutation/heuristic.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2025-01-13T12:34:04,891 copying build/lib/protenix/utils/permutation/atom_permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2025-01-13T12:34:04,894 copying build/lib/protenix/utils/permutation/permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2025-01-13T12:34:04,897 copying build/lib/protenix/utils/permutation/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2025-01-13T12:34:04,899 copying build/lib/protenix/utils/permutation/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2025-01-13T12:34:04,901 copying build/lib/protenix/utils/distributed.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,902 copying build/lib/protenix/utils/geometry.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,905 copying build/lib/protenix/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,906 copying build/lib/protenix/utils/seed.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,908 copying build/lib/protenix/utils/logger.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2025-01-13T12:34:04,910 creating build/bdist.linux-armv7l/wheel/protenix/data 2025-01-13T12:34:04,912 copying build/lib/protenix/data/featurizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,915 copying build/lib/protenix/data/substructure_perms.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,917 copying build/lib/protenix/data/infer_data_pipeline.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,919 copying build/lib/protenix/data/msa_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,922 copying build/lib/protenix/data/json_parser.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,925 copying build/lib/protenix/data/tokenizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,927 copying build/lib/protenix/data/dataset.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,930 copying build/lib/protenix/data/data_pipeline.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,933 copying build/lib/protenix/data/dataloader.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,935 copying build/lib/protenix/data/constants.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,938 copying build/lib/protenix/data/json_maker.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,940 copying build/lib/protenix/data/parser.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,943 copying build/lib/protenix/data/json_to_feature.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,946 copying build/lib/protenix/data/filter.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,948 copying build/lib/protenix/data/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,950 copying build/lib/protenix/data/ccd.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,953 copying build/lib/protenix/data/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,954 copying build/lib/protenix/data/msa_featurizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2025-01-13T12:34:04,958 creating build/bdist.linux-armv7l/wheel/protenix/model 2025-01-13T12:34:04,959 copying build/lib/protenix/model/sample_confidence.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:04,962 creating build/bdist.linux-armv7l/wheel/protenix/model/layer_norm 2025-01-13T12:34:04,964 copying build/lib/protenix/model/layer_norm/torch_ext_compile.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2025-01-13T12:34:04,966 creating build/bdist.linux-armv7l/wheel/protenix/model/layer_norm/kernel 2025-01-13T12:34:04,968 copying build/lib/protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2025-01-13T12:34:04,971 copying build/lib/protenix/model/layer_norm/kernel/type_shim.h -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2025-01-13T12:34:04,973 copying build/lib/protenix/model/layer_norm/kernel/compat.h -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2025-01-13T12:34:04,975 copying build/lib/protenix/model/layer_norm/kernel/layer_norm_cuda.cpp -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2025-01-13T12:34:04,978 copying build/lib/protenix/model/layer_norm/layer_norm.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2025-01-13T12:34:04,980 copying build/lib/protenix/model/layer_norm/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2025-01-13T12:34:04,983 copying build/lib/protenix/model/loss.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:04,986 copying build/lib/protenix/model/protenix.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:04,990 copying build/lib/protenix/model/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:04,992 copying build/lib/protenix/model/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:04,994 creating build/bdist.linux-armv7l/wheel/protenix/model/modules 2025-01-13T12:34:04,995 copying build/lib/protenix/model/modules/embedders.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:04,998 copying build/lib/protenix/model/modules/pairformer.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,001 copying build/lib/protenix/model/modules/transformer.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,003 copying build/lib/protenix/model/modules/primitives.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,006 copying build/lib/protenix/model/modules/frames.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,008 copying build/lib/protenix/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,010 copying build/lib/protenix/model/modules/head.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,012 copying build/lib/protenix/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,013 copying build/lib/protenix/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2025-01-13T12:34:05,016 copying build/lib/protenix/model/generator.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2025-01-13T12:34:05,018 copying build/lib/protenix/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix 2025-01-13T12:34:05,020 creating build/bdist.linux-armv7l/wheel/protenix/web_service 2025-01-13T12:34:05,021 copying build/lib/protenix/web_service/dependency_url.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,023 copying build/lib/protenix/web_service/viewer.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,026 copying build/lib/protenix/web_service/prediction_visualization.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,029 copying build/lib/protenix/web_service/colab_request_parser.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,031 copying build/lib/protenix/web_service/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,033 copying build/lib/protenix/web_service/colab_request_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2025-01-13T12:34:05,035 running install_egg_info 2025-01-13T12:34:05,068 Copying protenix.egg-info to build/bdist.linux-armv7l/wheel/./protenix-0.3.8-py3.11.egg-info 2025-01-13T12:34:05,080 running install_scripts 2025-01-13T12:34:05,099 creating build/bdist.linux-armv7l/wheel/protenix-0.3.8.dist-info/WHEEL 2025-01-13T12:34:05,102 creating '/tmp/pip-wheel-sgnyuko2/protenix-0.3.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-13T12:34:05,104 adding 'configs/__init__.py' 2025-01-13T12:34:05,106 adding 'configs/configs_base.py' 2025-01-13T12:34:05,108 adding 'configs/configs_data.py' 2025-01-13T12:34:05,109 adding 'configs/configs_inference.py' 2025-01-13T12:34:05,111 adding 'protenix/__init__.py' 2025-01-13T12:34:05,113 adding 'protenix/config/__init__.py' 2025-01-13T12:34:05,115 adding 'protenix/config/config.py' 2025-01-13T12:34:05,116 adding 'protenix/config/extend_types.py' 2025-01-13T12:34:05,118 adding 'protenix/data/__init__.py' 2025-01-13T12:34:05,120 adding 'protenix/data/ccd.py' 2025-01-13T12:34:05,124 adding 'protenix/data/constants.py' 2025-01-13T12:34:05,126 adding 'protenix/data/data_pipeline.py' 2025-01-13T12:34:05,128 adding 'protenix/data/dataloader.py' 2025-01-13T12:34:05,133 adding 'protenix/data/dataset.py' 2025-01-13T12:34:05,137 adding 'protenix/data/featurizer.py' 2025-01-13T12:34:05,139 adding 'protenix/data/filter.py' 2025-01-13T12:34:05,140 adding 'protenix/data/infer_data_pipeline.py' 2025-01-13T12:34:05,142 adding 'protenix/data/json_maker.py' 2025-01-13T12:34:05,145 adding 'protenix/data/json_parser.py' 2025-01-13T12:34:05,147 adding 'protenix/data/json_to_feature.py' 2025-01-13T12:34:05,152 adding 'protenix/data/msa_featurizer.py' 2025-01-13T12:34:05,158 adding 'protenix/data/msa_utils.py' 2025-01-13T12:34:05,163 adding 'protenix/data/parser.py' 2025-01-13T12:34:05,165 adding 'protenix/data/substructure_perms.py' 2025-01-13T12:34:05,167 adding 'protenix/data/tokenizer.py' 2025-01-13T12:34:05,170 adding 'protenix/data/utils.py' 2025-01-13T12:34:05,172 adding 'protenix/metrics/__init__.py' 2025-01-13T12:34:05,173 adding 'protenix/metrics/clash.py' 2025-01-13T12:34:05,175 adding 'protenix/metrics/lddt_metrics.py' 2025-01-13T12:34:05,177 adding 'protenix/metrics/rmsd.py' 2025-01-13T12:34:05,178 adding 'protenix/model/__init__.py' 2025-01-13T12:34:05,180 adding 'protenix/model/generator.py' 2025-01-13T12:34:05,186 adding 'protenix/model/loss.py' 2025-01-13T12:34:05,189 adding 'protenix/model/protenix.py' 2025-01-13T12:34:05,192 adding 'protenix/model/sample_confidence.py' 2025-01-13T12:34:05,195 adding 'protenix/model/utils.py' 2025-01-13T12:34:05,197 adding 'protenix/model/layer_norm/__init__.py' 2025-01-13T12:34:05,198 adding 'protenix/model/layer_norm/layer_norm.py' 2025-01-13T12:34:05,199 adding 'protenix/model/layer_norm/torch_ext_compile.py' 2025-01-13T12:34:05,201 adding 'protenix/model/layer_norm/kernel/compat.h' 2025-01-13T12:34:05,203 adding 'protenix/model/layer_norm/kernel/layer_norm_cuda.cpp' 2025-01-13T12:34:05,205 adding 'protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu' 2025-01-13T12:34:05,207 adding 'protenix/model/layer_norm/kernel/type_shim.h' 2025-01-13T12:34:05,208 adding 'protenix/model/modules/__init__.py' 2025-01-13T12:34:05,210 adding 'protenix/model/modules/confidence.py' 2025-01-13T12:34:05,213 adding 'protenix/model/modules/diffusion.py' 2025-01-13T12:34:05,214 adding 'protenix/model/modules/embedders.py' 2025-01-13T12:34:05,216 adding 'protenix/model/modules/frames.py' 2025-01-13T12:34:05,217 adding 'protenix/model/modules/head.py' 2025-01-13T12:34:05,220 adding 'protenix/model/modules/pairformer.py' 2025-01-13T12:34:05,224 adding 'protenix/model/modules/primitives.py' 2025-01-13T12:34:05,227 adding 'protenix/model/modules/transformer.py' 2025-01-13T12:34:05,229 adding 'protenix/openfold_local/__init__.py' 2025-01-13T12:34:05,231 adding 'protenix/openfold_local/data/__init__.py' 2025-01-13T12:34:05,232 adding 'protenix/openfold_local/data/data_transforms.py' 2025-01-13T12:34:05,233 adding 'protenix/openfold_local/data/errors.py' 2025-01-13T12:34:05,236 adding 'protenix/openfold_local/data/mmcif_parsing.py' 2025-01-13T12:34:05,237 adding 'protenix/openfold_local/data/msa_identifiers.py' 2025-01-13T12:34:05,240 adding 'protenix/openfold_local/data/msa_pairing.py' 2025-01-13T12:34:05,243 adding 'protenix/openfold_local/data/parsers.py' 2025-01-13T12:34:05,246 adding 'protenix/openfold_local/data/templates.py' 2025-01-13T12:34:05,248 adding 'protenix/openfold_local/data/tools/__init__.py' 2025-01-13T12:34:05,250 adding 'protenix/openfold_local/data/tools/jackhmmer.py' 2025-01-13T12:34:05,251 adding 'protenix/openfold_local/data/tools/utils.py' 2025-01-13T12:34:05,253 adding 'protenix/openfold_local/model/__init__.py' 2025-01-13T12:34:05,254 adding 'protenix/openfold_local/model/dropout.py' 2025-01-13T12:34:05,255 adding 'protenix/openfold_local/model/outer_product_mean.py' 2025-01-13T12:34:05,259 adding 'protenix/openfold_local/model/primitives.py' 2025-01-13T12:34:05,260 adding 'protenix/openfold_local/model/triangular_attention.py' 2025-01-13T12:34:05,263 adding 'protenix/openfold_local/model/triangular_multiplicative_update.py' 2025-01-13T12:34:05,265 adding 'protenix/openfold_local/np/__init__.py' 2025-01-13T12:34:05,270 adding 'protenix/openfold_local/np/residue_constants.py' 2025-01-13T12:34:05,272 adding 'protenix/openfold_local/utils/__init__.py' 2025-01-13T12:34:05,274 adding 'protenix/openfold_local/utils/all_atom_multimer.py' 2025-01-13T12:34:05,276 adding 'protenix/openfold_local/utils/checkpointing.py' 2025-01-13T12:34:05,278 adding 'protenix/openfold_local/utils/chunk_utils.py' 2025-01-13T12:34:05,279 adding 'protenix/openfold_local/utils/feats.py' 2025-01-13T12:34:05,281 adding 'protenix/openfold_local/utils/precision_utils.py' 2025-01-13T12:34:05,285 adding 'protenix/openfold_local/utils/rigid_utils.py' 2025-01-13T12:34:05,286 adding 'protenix/openfold_local/utils/tensor_utils.py' 2025-01-13T12:34:05,288 adding 'protenix/openfold_local/utils/geometry/__init__.py' 2025-01-13T12:34:05,289 adding 'protenix/openfold_local/utils/geometry/quat_rigid.py' 2025-01-13T12:34:05,291 adding 'protenix/openfold_local/utils/geometry/rigid_matrix_vector.py' 2025-01-13T12:34:05,292 adding 'protenix/openfold_local/utils/geometry/rotation_matrix.py' 2025-01-13T12:34:05,293 adding 'protenix/openfold_local/utils/geometry/test_utils.py' 2025-01-13T12:34:05,294 adding 'protenix/openfold_local/utils/geometry/utils.py' 2025-01-13T12:34:05,296 adding 'protenix/openfold_local/utils/geometry/vector.py' 2025-01-13T12:34:05,298 adding 'protenix/openfold_local/utils/kernel/__init__.py' 2025-01-13T12:34:05,299 adding 'protenix/openfold_local/utils/kernel/attention_core.py' 2025-01-13T12:34:05,301 adding 'protenix/utils/__init__.py' 2025-01-13T12:34:05,304 adding 'protenix/utils/cropping.py' 2025-01-13T12:34:05,305 adding 'protenix/utils/distributed.py' 2025-01-13T12:34:05,307 adding 'protenix/utils/file_io.py' 2025-01-13T12:34:05,308 adding 'protenix/utils/geometry.py' 2025-01-13T12:34:05,309 adding 'protenix/utils/logger.py' 2025-01-13T12:34:05,310 adding 'protenix/utils/lr_scheduler.py' 2025-01-13T12:34:05,312 adding 'protenix/utils/metrics.py' 2025-01-13T12:34:05,313 adding 'protenix/utils/scatter_utils.py' 2025-01-13T12:34:05,315 adding 'protenix/utils/seed.py' 2025-01-13T12:34:05,316 adding 'protenix/utils/torch_utils.py' 2025-01-13T12:34:05,317 adding 'protenix/utils/training.py' 2025-01-13T12:34:05,319 adding 'protenix/utils/permutation/__init__.py' 2025-01-13T12:34:05,323 adding 'protenix/utils/permutation/atom_permutation.py' 2025-01-13T12:34:05,325 adding 'protenix/utils/permutation/permutation.py' 2025-01-13T12:34:05,327 adding 'protenix/utils/permutation/utils.py' 2025-01-13T12:34:05,329 adding 'protenix/utils/permutation/chain_permutation/__init__.py' 2025-01-13T12:34:05,333 adding 'protenix/utils/permutation/chain_permutation/heuristic.py' 2025-01-13T12:34:05,335 adding 'protenix/utils/permutation/chain_permutation/pocket_based_permutation.py' 2025-01-13T12:34:05,337 adding 'protenix/utils/permutation/chain_permutation/utils.py' 2025-01-13T12:34:05,338 adding 'protenix/web_service/__init__.py' 2025-01-13T12:34:05,341 adding 'protenix/web_service/colab_request_parser.py' 2025-01-13T12:34:05,342 adding 'protenix/web_service/colab_request_utils.py' 2025-01-13T12:34:05,344 adding 'protenix/web_service/dependency_url.py' 2025-01-13T12:34:05,346 adding 'protenix/web_service/prediction_visualization.py' 2025-01-13T12:34:05,348 adding 'protenix/web_service/viewer.py' 2025-01-13T12:34:05,350 adding 'runner/__init__.py' 2025-01-13T12:34:05,353 adding 'runner/batch_inference.py' 2025-01-13T12:34:05,354 adding 'runner/dumper.py' 2025-01-13T12:34:05,355 adding 'runner/ema.py' 2025-01-13T12:34:05,358 adding 'runner/inference.py' 2025-01-13T12:34:05,359 adding 'runner/msa_search.py' 2025-01-13T12:34:05,362 adding 'runner/train.py' 2025-01-13T12:34:05,364 adding 'protenix-0.3.8.dist-info/LICENSE' 2025-01-13T12:34:05,365 adding 'protenix-0.3.8.dist-info/METADATA' 2025-01-13T12:34:05,366 adding 'protenix-0.3.8.dist-info/WHEEL' 2025-01-13T12:34:05,367 adding 'protenix-0.3.8.dist-info/entry_points.txt' 2025-01-13T12:34:05,368 adding 'protenix-0.3.8.dist-info/top_level.txt' 2025-01-13T12:34:05,370 adding 'protenix-0.3.8.dist-info/RECORD' 2025-01-13T12:34:05,377 removing build/bdist.linux-armv7l/wheel 2025-01-13T12:34:05,529 Building wheel for protenix (setup.py): finished with status 'done' 2025-01-13T12:34:05,536 Created wheel for protenix: filename=protenix-0.3.8-py3-none-any.whl size=383724 sha256=f48473ae65c65269825258d1076bd926d822c91535ffc1016ec1b6aa051d6c12 2025-01-13T12:34:05,537 Stored in directory: /tmp/pip-ephem-wheel-cache-udw6r86y/wheels/93/fb/d1/45370e11d5574e1044de7e6802bc726d25d438983cbbcf8786 2025-01-13T12:34:05,550 Successfully built protenix 2025-01-13T12:34:05,567 Removed build tracker: '/tmp/pip-build-tracker-if5llxnn'