2025-01-13T17:51:58,942 Created temporary directory: /tmp/pip-build-tracker-ijfx10q_
2025-01-13T17:51:58,944 Initialized build tracking at /tmp/pip-build-tracker-ijfx10q_
2025-01-13T17:51:58,944 Created build tracker: /tmp/pip-build-tracker-ijfx10q_
2025-01-13T17:51:58,945 Entered build tracker: /tmp/pip-build-tracker-ijfx10q_
2025-01-13T17:51:58,945 Created temporary directory: /tmp/pip-wheel-y4sd0xjo
2025-01-13T17:51:58,949 Created temporary directory: /tmp/pip-ephem-wheel-cache-pv01bv4u
2025-01-13T17:51:58,993 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-13T17:51:58,996 2 location(s) to search for versions of rsalor:
2025-01-13T17:51:58,996 * https://pypi.org/simple/rsalor/
2025-01-13T17:51:58,996 * https://www.piwheels.org/simple/rsalor/
2025-01-13T17:51:58,997 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-01-13T17:51:58,997 Getting page https://pypi.org/simple/rsalor/
2025-01-13T17:51:58,999 Found index url https://pypi.org/simple/
2025-01-13T17:51:59,221 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-01-13T17:51:59,225   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-01-13T17:51:59,226   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-01-13T17:51:59,227   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-01-13T17:51:59,228   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-01-13T17:51:59,229   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-01-13T17:51:59,230   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-01-13T17:51:59,231   Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6
2025-01-13T17:51:59,232   Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7
2025-01-13T17:51:59,233   Found link https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.8
2025-01-13T17:51:59,234 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-01-13T17:51:59,235 Getting page https://www.piwheels.org/simple/rsalor/
2025-01-13T17:51:59,236 Found index url https://www.piwheels.org/simple/
2025-01-13T17:51:59,409 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-01-13T17:51:59,415   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,416   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,417   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,418   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,418   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,419   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,419   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,419   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,420   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,420   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,421   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,421   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,422   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,422   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,423   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,423   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,424   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,425   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,426   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,426   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-13T17:51:59,426 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-01-13T17:51:59,427 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-01-13T17:51:59,446 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-01-13T17:51:59,448 Collecting rsalor==1.0.8
2025-01-13T17:51:59,451   Created temporary directory: /tmp/pip-unpack-nr2xxg4w
2025-01-13T17:51:59,668   Downloading rsalor-1.0.8.tar.gz (48 kB)
2025-01-13T17:51:59,789   Added rsalor==1.0.8 from https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-ijfx10q_'
2025-01-13T17:51:59,791   Running setup.py (path:/tmp/pip-wheel-y4sd0xjo/rsalor_5c4d6e1fef6f414ebf3ed49141557e06/setup.py) egg_info for package rsalor
2025-01-13T17:51:59,792   Created temporary directory: /tmp/pip-pip-egg-info-xcrds623
2025-01-13T17:51:59,793   Preparing metadata (setup.py): started
2025-01-13T17:51:59,794   Running command python setup.py egg_info
2025-01-13T17:52:00,909   running egg_info
2025-01-13T17:52:00,937   creating /tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info
2025-01-13T17:52:00,938   writing /tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/PKG-INFO
2025-01-13T17:52:00,941   writing dependency_links to /tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/dependency_links.txt
2025-01-13T17:52:00,943   writing requirements to /tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/requires.txt
2025-01-13T17:52:00,944   writing top-level names to /tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/top_level.txt
2025-01-13T17:52:00,945   writing manifest file '/tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/SOURCES.txt'
2025-01-13T17:52:01,063   reading manifest file '/tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/SOURCES.txt'
2025-01-13T17:52:01,065   reading manifest template 'MANIFEST.in'
2025-01-13T17:52:01,072   warning: no previously-included files found matching 'fig/*'
2025-01-13T17:52:01,073   warning: no previously-included files found matching 'src/*'
2025-01-13T17:52:01,074   warning: no previously-included files found matching 'tmp/*'
2025-01-13T17:52:01,074   warning: no previously-included files found matching '0_*'
2025-01-13T17:52:01,075   warning: no previously-included files found matching 'conda-env.yml'
2025-01-13T17:52:01,075   warning: no previously-included files found matching 'test_data/*'
2025-01-13T17:52:01,076   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-13T17:52:01,077   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-13T17:52:01,078   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-13T17:52:01,079   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-13T17:52:01,079   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-13T17:52:01,080   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-13T17:52:01,081   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-01-13T17:52:01,081   adding license file 'LICENCE'
2025-01-13T17:52:01,084   writing manifest file '/tmp/pip-pip-egg-info-xcrds623/rsalor.egg-info/SOURCES.txt'
2025-01-13T17:52:01,197   Preparing metadata (setup.py): finished with status 'done'
2025-01-13T17:52:01,201   Source in /tmp/pip-wheel-y4sd0xjo/rsalor_5c4d6e1fef6f414ebf3ed49141557e06 has version 1.0.8, which satisfies requirement rsalor==1.0.8 from https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz
2025-01-13T17:52:01,202   Removed rsalor==1.0.8 from https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-ijfx10q_'
2025-01-13T17:52:01,209 Created temporary directory: /tmp/pip-unpack-bvgue0h1
2025-01-13T17:52:01,210 Created temporary directory: /tmp/pip-unpack-10h3us8h
2025-01-13T17:52:01,210 Building wheels for collected packages: rsalor
2025-01-13T17:52:01,214   Created temporary directory: /tmp/pip-wheel-arvvs7_s
2025-01-13T17:52:01,215   Building wheel for rsalor (setup.py): started
2025-01-13T17:52:01,216   Destination directory: /tmp/pip-wheel-arvvs7_s
2025-01-13T17:52:01,217   Running command python setup.py bdist_wheel
2025-01-13T17:52:02,277   running bdist_wheel
2025-01-13T17:52:02,412   running build
2025-01-13T17:52:02,413   running build_py
2025-01-13T17:52:02,443   creating build/lib.linux-armv7l-cpython-311/rsalor
2025-01-13T17:52:02,446   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-13T17:52:02,448   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-13T17:52:02,452   creating build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,453   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,456   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,458   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,460   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,462   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-13T17:52:02,465   creating build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-13T17:52:02,466   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-13T17:52:02,469   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-13T17:52:02,471   creating build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-13T17:52:02,473   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-13T17:52:02,475   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-13T17:52:02,477   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-13T17:52:02,480   creating build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,481   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,483   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,486   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,488   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,491   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,493   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-13T17:52:02,496   creating build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,497   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,499   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,501   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,503   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,505   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-13T17:52:02,513   running build_ext
2025-01-13T17:52:02,971   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-01-13T17:52:02,973   creating build/temp.linux-armv7l-cpython-311/rsalor/weights
2025-01-13T17:52:02,974   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3
2025-01-13T17:52:04,559   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-01-13T17:52:04,559   rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-01-13T17:52:04,560      38 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-01-13T17:52:04,560         |                    ~~^~~~~~~~~~~
2025-01-13T17:52:05,028   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3
2025-01-13T17:52:09,929   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -O3
2025-01-13T17:52:10,214   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-13T17:52:10,215   !!

2025-01-13T17:52:10,216           ********************************************************************************
2025-01-13T17:52:10,217           Please avoid running ``setup.py`` directly.
2025-01-13T17:52:10,217           Instead, use pypa/build, pypa/installer or other
2025-01-13T17:52:10,218           standards-based tools.

2025-01-13T17:52:10,219           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-13T17:52:10,219           ********************************************************************************

2025-01-13T17:52:10,221   !!
2025-01-13T17:52:10,221     self.initialize_options()
2025-01-13T17:52:10,243   installing to build/bdist.linux-armv7l/wheel
2025-01-13T17:52:10,243   running install
2025-01-13T17:52:10,267   running install_lib
2025-01-13T17:52:10,295   creating build/bdist.linux-armv7l/wheel
2025-01-13T17:52:10,297   creating build/bdist.linux-armv7l/wheel/rsalor
2025-01-13T17:52:10,299   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-01-13T17:52:10,301   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-13T17:52:10,303   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-13T17:52:10,305   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-13T17:52:10,307   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-13T17:52:10,308   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-13T17:52:10,311   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-01-13T17:52:10,312   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-13T17:52:10,314   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-13T17:52:10,316   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-13T17:52:10,327   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-01-13T17:52:10,329   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-13T17:52:10,331   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-13T17:52:10,333   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-13T17:52:10,335   copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-13T17:52:10,337   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-01-13T17:52:10,339   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,341   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,344   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,346   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,349   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,351   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-13T17:52:10,354   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-01-13T17:52:10,355   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-13T17:52:10,358   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-13T17:52:10,360   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-13T17:52:10,362   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-13T17:52:10,365   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-13T17:52:10,367   copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-13T17:52:10,370   running install_egg_info
2025-01-13T17:52:10,405   running egg_info
2025-01-13T17:52:10,433   writing rsalor.egg-info/PKG-INFO
2025-01-13T17:52:10,437   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-01-13T17:52:10,438   writing requirements to rsalor.egg-info/requires.txt
2025-01-13T17:52:10,439   writing top-level names to rsalor.egg-info/top_level.txt
2025-01-13T17:52:10,477   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-13T17:52:10,481   reading manifest template 'MANIFEST.in'
2025-01-13T17:52:10,487   warning: no previously-included files found matching 'fig/*'
2025-01-13T17:52:10,488   warning: no previously-included files found matching 'src/*'
2025-01-13T17:52:10,489   warning: no previously-included files found matching 'tmp/*'
2025-01-13T17:52:10,490   warning: no previously-included files found matching '0_*'
2025-01-13T17:52:10,490   warning: no previously-included files found matching 'conda-env.yml'
2025-01-13T17:52:10,491   warning: no previously-included files found matching 'test_data/*'
2025-01-13T17:52:10,492   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-13T17:52:10,493   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-13T17:52:10,494   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-13T17:52:10,495   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-13T17:52:10,496   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-13T17:52:10,496   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-13T17:52:10,498   adding license file 'LICENCE'
2025-01-13T17:52:10,501   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-13T17:52:10,502   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.8-py3.11.egg-info
2025-01-13T17:52:10,513   running install_scripts
2025-01-13T17:52:10,571   creating build/bdist.linux-armv7l/wheel/rsalor-1.0.8.dist-info/WHEEL
2025-01-13T17:52:10,573   creating '/tmp/pip-wheel-arvvs7_s/rsalor-1.0.8-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-13T17:52:10,576   adding 'rsalor/__init__.py'
2025-01-13T17:52:10,581   adding 'rsalor/msa.py'
2025-01-13T17:52:10,583   adding 'rsalor/rsa/__init__.py'
2025-01-13T17:52:10,584   adding 'rsalor/rsa/rsa_biopython.py'
2025-01-13T17:52:10,586   adding 'rsalor/rsa/rsa_dssp.py'
2025-01-13T17:52:10,588   adding 'rsalor/rsa/rsa_music.py'
2025-01-13T17:52:10,590   adding 'rsalor/rsa/rsa_solver.py'
2025-01-13T17:52:10,592   adding 'rsalor/sequence/__init__.py'
2025-01-13T17:52:10,595   adding 'rsalor/sequence/amino_acid.py'
2025-01-13T17:52:10,596   adding 'rsalor/sequence/fasta_reader.py'
2025-01-13T17:52:10,598   adding 'rsalor/sequence/mutation.py'
2025-01-13T17:52:10,600   adding 'rsalor/sequence/pairwise_alignment.py'
2025-01-13T17:52:10,601   adding 'rsalor/sequence/sequence.py'
2025-01-13T17:52:10,603   adding 'rsalor/structure/__init__.py'
2025-01-13T17:52:10,605   adding 'rsalor/structure/residue.py'
2025-01-13T17:52:10,606   adding 'rsalor/structure/structure.py'
2025-01-13T17:52:10,610   adding 'rsalor/utils/CSV.py'
2025-01-13T17:52:10,611   adding 'rsalor/utils/__init__.py'
2025-01-13T17:52:10,612   adding 'rsalor/utils/ali_to_fasta.py'
2025-01-13T17:52:10,614   adding 'rsalor/utils/logger.py'
2025-01-13T17:52:10,615   adding 'rsalor/utils/utils.py'
2025-01-13T17:52:10,617   adding 'rsalor/weights/__init__.py'
2025-01-13T17:52:10,619   adding 'rsalor/weights/compute_weights.py'
2025-01-13T17:52:10,713   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so'
2025-01-13T17:52:10,718   adding 'rsalor-1.0.8.dist-info/LICENCE'
2025-01-13T17:52:10,719   adding 'rsalor-1.0.8.dist-info/METADATA'
2025-01-13T17:52:10,720   adding 'rsalor-1.0.8.dist-info/WHEEL'
2025-01-13T17:52:10,721   adding 'rsalor-1.0.8.dist-info/top_level.txt'
2025-01-13T17:52:10,722   adding 'rsalor-1.0.8.dist-info/RECORD'
2025-01-13T17:52:10,726   removing build/bdist.linux-armv7l/wheel
2025-01-13T17:52:10,886   Building wheel for rsalor (setup.py): finished with status 'done'
2025-01-13T17:52:10,891   Created wheel for rsalor: filename=rsalor-1.0.8-cp311-cp311-linux_armv7l.whl size=226433 sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9
2025-01-13T17:52:10,892   Stored in directory: /tmp/pip-ephem-wheel-cache-pv01bv4u/wheels/67/28/1f/a4f6e8578946a5d079eb8e4ffdc5a26e1dde0e80b6e1dcd80d
2025-01-13T17:52:10,903 Successfully built rsalor
2025-01-13T17:52:10,912 Removed build tracker: '/tmp/pip-build-tracker-ijfx10q_'