2025-01-14T07:58:15,734 Created temporary directory: /tmp/pip-build-tracker-z8no2b2n 2025-01-14T07:58:15,736 Initialized build tracking at /tmp/pip-build-tracker-z8no2b2n 2025-01-14T07:58:15,736 Created build tracker: /tmp/pip-build-tracker-z8no2b2n 2025-01-14T07:58:15,737 Entered build tracker: /tmp/pip-build-tracker-z8no2b2n 2025-01-14T07:58:15,737 Created temporary directory: /tmp/pip-wheel-w8aow87l 2025-01-14T07:58:15,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-lfyxz6it 2025-01-14T07:58:15,790 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-14T07:58:15,793 2 location(s) to search for versions of topaz-em: 2025-01-14T07:58:15,793 * https://pypi.org/simple/topaz-em/ 2025-01-14T07:58:15,793 * https://www.piwheels.org/simple/topaz-em/ 2025-01-14T07:58:15,794 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/ 2025-01-14T07:58:15,794 Getting page https://pypi.org/simple/topaz-em/ 2025-01-14T07:58:15,796 Found index url https://pypi.org/simple/ 2025-01-14T07:58:16,018 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json 2025-01-14T07:58:16,024 Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0 2025-01-14T07:58:16,025 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,026 Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1 2025-01-14T07:58:16,026 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,027 Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2 2025-01-14T07:58:16,028 Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3 2025-01-14T07:58:16,028 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,029 Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4 2025-01-14T07:58:16,030 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,030 Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0 2025-01-14T07:58:16,031 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,031 Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5 2025-01-14T07:58:16,032 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,033 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,033 Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0 2025-01-14T07:58:16,034 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/9c/8d/7720e829913c8b02aa880a0cf34bec0b5c9e7d1af2812a6d237c7539b6d6/topaz_em-0.3.1-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) 2025-01-14T07:58:16,034 Found link https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.1 2025-01-14T07:58:16,035 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d9/f9/5954f56b438dd6f1f08554f0d4403027ebda5e424b4df9c9a9b1b38ea4f2/topaz_em-0.3.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2025-01-14T07:58:16,036 Found link https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.4 2025-01-14T07:58:16,037 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/bf/cf/c95a25d77ce773c6793924ebf1773b09cc0d53273ffc0924b03d5cb19910/topaz_em-0.3.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2025-01-14T07:58:16,038 Found link https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.5 2025-01-14T07:58:16,038 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d6/5d/f8715405f1fc39b0cddaf9434c8f609fcd296e49d7e0a637a88f69e56444/topaz_em-0.3.6-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2025-01-14T07:58:16,039 Found link https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.6 2025-01-14T07:58:16,040 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/43/8f/116313380191600f92b8cc038e2eda21d520cf5e7ccdc8c5f3e90970a8c3/topaz_em-0.3.7-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2025-01-14T07:58:16,041 Found link https://files.pythonhosted.org/packages/27/b6/2426a0df9de7af9c1594cdf171606318e02a1e38d7cc01a0e9ba14c3b2ec/topaz_em-0.3.7.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.7 2025-01-14T07:58:16,042 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/ 2025-01-14T07:58:16,042 Getting page https://www.piwheels.org/simple/topaz-em/ 2025-01-14T07:58:16,044 Found index url https://www.piwheels.org/simple/ 2025-01-14T07:58:16,208 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html 2025-01-14T07:58:16,213 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.6-py3-none-any.whl#sha256=31bcbe65121c60b695fc172e31e788af269904cb6f023d6ea7acaadd03fd01ff (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2025-01-14T07:58:16,214 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.5-py3-none-any.whl#sha256=a51b117556b0902d11bad3e1b0daaeb973ae7dcb00417b8bc07c1d895553d8a8 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2025-01-14T07:58:16,214 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.4-py3-none-any.whl#sha256=b962fae383a6452ef55bc823afec9fd34b6f6bbb57274fa304f3a4a234f23dd1 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2025-01-14T07:58:16,215 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.1-py3-none-any.whl#sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,215 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,216 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,217 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,217 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,217 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,218 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,219 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,219 Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/) 2025-01-14T07:58:16,220 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/ 2025-01-14T07:58:16,221 Skipping link: not a file: https://pypi.org/simple/topaz-em/ 2025-01-14T07:58:16,241 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates 2025-01-14T07:58:16,243 Collecting topaz-em==0.3.7 2025-01-14T07:58:16,245 Created temporary directory: /tmp/pip-unpack-dsucor9j 2025-01-14T07:58:16,485 Downloading topaz_em-0.3.7.tar.gz (48.2 MB) 2025-01-14T07:58:26,056 Added topaz-em==0.3.7 from https://files.pythonhosted.org/packages/27/b6/2426a0df9de7af9c1594cdf171606318e02a1e38d7cc01a0e9ba14c3b2ec/topaz_em-0.3.7.tar.gz to build tracker '/tmp/pip-build-tracker-z8no2b2n' 2025-01-14T07:58:26,057 Running setup.py (path:/tmp/pip-wheel-w8aow87l/topaz-em_b18889e9b0f24e718c88d542eaacb4ef/setup.py) egg_info for package topaz-em 2025-01-14T07:58:26,058 Created temporary directory: /tmp/pip-pip-egg-info-lslduiro 2025-01-14T07:58:26,059 Preparing metadata (setup.py): started 2025-01-14T07:58:26,061 Running command python setup.py egg_info 2025-01-14T07:58:27,138 running egg_info 2025-01-14T07:58:27,165 creating /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info 2025-01-14T07:58:27,166 writing /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/PKG-INFO 2025-01-14T07:58:27,170 writing dependency_links to /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/dependency_links.txt 2025-01-14T07:58:27,171 writing entry points to /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/entry_points.txt 2025-01-14T07:58:27,173 writing requirements to /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/requires.txt 2025-01-14T07:58:27,174 writing top-level names to /tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/top_level.txt 2025-01-14T07:58:27,176 writing manifest file '/tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/SOURCES.txt' 2025-01-14T07:58:27,270 reading manifest file '/tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/SOURCES.txt' 2025-01-14T07:58:27,272 reading manifest template 'MANIFEST.in' 2025-01-14T07:58:27,275 adding license file 'LICENSE' 2025-01-14T07:58:27,280 writing manifest file '/tmp/pip-pip-egg-info-lslduiro/topaz_em.egg-info/SOURCES.txt' 2025-01-14T07:58:27,387 Preparing metadata (setup.py): finished with status 'done' 2025-01-14T07:58:27,391 Source in /tmp/pip-wheel-w8aow87l/topaz-em_b18889e9b0f24e718c88d542eaacb4ef has version 0.3.7, which satisfies requirement topaz-em==0.3.7 from https://files.pythonhosted.org/packages/27/b6/2426a0df9de7af9c1594cdf171606318e02a1e38d7cc01a0e9ba14c3b2ec/topaz_em-0.3.7.tar.gz 2025-01-14T07:58:27,392 Removed topaz-em==0.3.7 from https://files.pythonhosted.org/packages/27/b6/2426a0df9de7af9c1594cdf171606318e02a1e38d7cc01a0e9ba14c3b2ec/topaz_em-0.3.7.tar.gz from build tracker '/tmp/pip-build-tracker-z8no2b2n' 2025-01-14T07:58:27,400 Created temporary directory: /tmp/pip-unpack-rprdeo6p 2025-01-14T07:58:27,401 Created temporary directory: /tmp/pip-unpack-_04l_32w 2025-01-14T07:58:27,401 Building wheels for collected packages: topaz-em 2025-01-14T07:58:27,406 Created temporary directory: /tmp/pip-wheel-hhqhi238 2025-01-14T07:58:27,406 Building wheel for topaz-em (setup.py): started 2025-01-14T07:58:27,408 Destination directory: /tmp/pip-wheel-hhqhi238 2025-01-14T07:58:27,408 Running command python setup.py bdist_wheel 2025-01-14T07:58:28,450 running bdist_wheel 2025-01-14T07:58:28,589 running build 2025-01-14T07:58:28,590 running build_py 2025-01-14T07:58:28,627 creating build/lib/topaz 2025-01-14T07:58:28,634 copying topaz/__init__.py -> build/lib/topaz 2025-01-14T07:58:28,638 copying topaz/filters.py -> build/lib/topaz 2025-01-14T07:58:28,641 copying topaz/metrics.py -> build/lib/topaz 2025-01-14T07:58:28,649 copying topaz/mrc.py -> build/lib/topaz 2025-01-14T07:58:28,654 copying topaz/torch.py -> build/lib/topaz 2025-01-14T07:58:28,657 copying topaz/cuda.py -> build/lib/topaz 2025-01-14T07:58:28,659 copying topaz/denoise.py -> build/lib/topaz 2025-01-14T07:58:28,662 copying topaz/predict.py -> build/lib/topaz 2025-01-14T07:58:28,665 copying topaz/main.py -> build/lib/topaz 2025-01-14T07:58:28,667 copying topaz/training.py -> build/lib/topaz 2025-01-14T07:58:28,671 copying topaz/_version.py -> build/lib/topaz 2025-01-14T07:58:28,673 copying topaz/stats.py -> build/lib/topaz 2025-01-14T07:58:28,675 copying topaz/methods.py -> build/lib/topaz 2025-01-14T07:58:28,678 copying topaz/extract.py -> build/lib/topaz 2025-01-14T07:58:28,682 copying topaz/algorithms.py -> build/lib/topaz 2025-01-14T07:58:28,686 creating build/lib/topaz/utils 2025-01-14T07:58:28,688 copying topaz/utils/picks.py -> build/lib/topaz/utils 2025-01-14T07:58:28,692 copying topaz/utils/__init__.py -> build/lib/topaz/utils 2025-01-14T07:58:28,694 copying topaz/utils/conversions.py -> build/lib/topaz/utils 2025-01-14T07:58:28,698 copying topaz/utils/printing.py -> build/lib/topaz/utils 2025-01-14T07:58:28,701 copying topaz/utils/image.py -> build/lib/topaz/utils 2025-01-14T07:58:28,705 copying topaz/utils/star.py -> build/lib/topaz/utils 2025-01-14T07:58:28,707 copying topaz/utils/files.py -> build/lib/topaz/utils 2025-01-14T07:58:28,710 creating build/lib/topaz/model 2025-01-14T07:58:28,712 copying topaz/model/__init__.py -> build/lib/topaz/model 2025-01-14T07:58:28,714 copying topaz/model/classifier.py -> build/lib/topaz/model 2025-01-14T07:58:28,716 copying topaz/model/factory.py -> build/lib/topaz/model 2025-01-14T07:58:28,718 copying topaz/model/utils.py -> build/lib/topaz/model 2025-01-14T07:58:28,721 copying topaz/model/generative.py -> build/lib/topaz/model 2025-01-14T07:58:28,723 creating build/lib/topaz/denoising 2025-01-14T07:58:28,725 copying topaz/denoising/__init__.py -> build/lib/topaz/denoising 2025-01-14T07:58:28,727 copying topaz/denoising/models.py -> build/lib/topaz/denoising 2025-01-14T07:58:28,730 copying topaz/denoising/utils.py -> build/lib/topaz/denoising 2025-01-14T07:58:28,732 copying topaz/denoising/datasets.py -> build/lib/topaz/denoising 2025-01-14T07:58:28,736 creating build/lib/topaz/commands 2025-01-14T07:58:28,737 copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands 2025-01-14T07:58:28,740 copying topaz/commands/__init__.py -> build/lib/topaz/commands 2025-01-14T07:58:28,742 copying topaz/commands/train_test_split.py -> build/lib/topaz/commands 2025-01-14T07:58:28,744 copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands 2025-01-14T07:58:28,746 copying topaz/commands/denoise3d.py -> build/lib/topaz/commands 2025-01-14T07:58:28,749 copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands 2025-01-14T07:58:28,751 copying topaz/commands/preprocess.py -> build/lib/topaz/commands 2025-01-14T07:58:28,753 copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands 2025-01-14T07:58:28,755 copying topaz/commands/split.py -> build/lib/topaz/commands 2025-01-14T07:58:28,758 copying topaz/commands/normalize.py -> build/lib/topaz/commands 2025-01-14T07:58:28,760 copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands 2025-01-14T07:58:28,762 copying topaz/commands/segment.py -> build/lib/topaz/commands 2025-01-14T07:58:28,765 copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands 2025-01-14T07:58:28,767 copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands 2025-01-14T07:58:28,769 copying topaz/commands/denoise.py -> build/lib/topaz/commands 2025-01-14T07:58:28,772 copying topaz/commands/convert.py -> build/lib/topaz/commands 2025-01-14T07:58:28,775 copying topaz/commands/particle_stack.py -> build/lib/topaz/commands 2025-01-14T07:58:28,777 copying topaz/commands/train.py -> build/lib/topaz/commands 2025-01-14T07:58:28,780 copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands 2025-01-14T07:58:28,782 copying topaz/commands/downsample.py -> build/lib/topaz/commands 2025-01-14T07:58:28,784 copying topaz/commands/extract.py -> build/lib/topaz/commands 2025-01-14T07:58:28,787 copying topaz/commands/gui.py -> build/lib/topaz/commands 2025-01-14T07:58:28,789 creating build/lib/topaz/transform 2025-01-14T07:58:28,791 copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform 2025-01-14T07:58:28,794 copying topaz/transform/__init__.py -> build/lib/topaz/transform 2025-01-14T07:58:28,797 creating build/lib/topaz/utils/data 2025-01-14T07:58:28,798 copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,801 copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,808 copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,810 copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,812 copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,814 copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,817 copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data 2025-01-14T07:58:28,819 creating build/lib/topaz/model/features 2025-01-14T07:58:28,821 copying topaz/model/features/msnet.py -> build/lib/topaz/model/features 2025-01-14T07:58:28,823 copying topaz/model/features/__init__.py -> build/lib/topaz/model/features 2025-01-14T07:58:28,825 copying topaz/model/features/basic.py -> build/lib/topaz/model/features 2025-01-14T07:58:28,827 copying topaz/model/features/resnet.py -> build/lib/topaz/model/features 2025-01-14T07:58:28,829 copying topaz/model/features/densenet.py -> build/lib/topaz/model/features 2025-01-14T07:58:28,831 running egg_info 2025-01-14T07:58:28,858 writing topaz_em.egg-info/PKG-INFO 2025-01-14T07:58:28,861 writing dependency_links to topaz_em.egg-info/dependency_links.txt 2025-01-14T07:58:28,863 writing entry points to topaz_em.egg-info/entry_points.txt 2025-01-14T07:58:28,864 writing requirements to topaz_em.egg-info/requires.txt 2025-01-14T07:58:28,865 writing top-level names to topaz_em.egg-info/top_level.txt 2025-01-14T07:58:28,905 reading manifest file 'topaz_em.egg-info/SOURCES.txt' 2025-01-14T07:58:28,911 reading manifest template 'MANIFEST.in' 2025-01-14T07:58:28,914 adding license file 'LICENSE' 2025-01-14T07:58:28,920 writing manifest file 'topaz_em.egg-info/SOURCES.txt' 2025-01-14T07:58:28,922 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration. 2025-01-14T07:58:28,923 !! 2025-01-14T07:58:28,924 ******************************************************************************** 2025-01-14T07:58:28,924 ############################ 2025-01-14T07:58:28,924 # Package would be ignored # 2025-01-14T07:58:28,925 ############################ 2025-01-14T07:58:28,925 Python recognizes 'topaz.gui' as an importable package[^1], 2025-01-14T07:58:28,926 but it is absent from setuptools' `packages` configuration. 2025-01-14T07:58:28,927 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-14T07:58:28,927 package, please make sure that 'topaz.gui' is explicitly added 2025-01-14T07:58:28,928 to the `packages` configuration field. 2025-01-14T07:58:28,929 Alternatively, you can also rely on setuptools' discovery methods 2025-01-14T07:58:28,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-14T07:58:28,930 instead of `find_packages(...)`/`find:`). 2025-01-14T07:58:28,931 You can read more about "package discovery" on setuptools documentation page: 2025-01-14T07:58:28,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-14T07:58:28,934 If you don't want 'topaz.gui' to be distributed and are 2025-01-14T07:58:28,934 already explicitly excluding 'topaz.gui' via 2025-01-14T07:58:28,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-14T07:58:28,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-14T07:58:28,937 combination with a more fine grained `package-data` configuration. 2025-01-14T07:58:28,944 You can read more about "package data files" on setuptools documentation page: 2025-01-14T07:58:28,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-14T07:58:28,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-14T07:58:28,947 even if it does not contain any `.py` files. 2025-01-14T07:58:28,948 On the other hand, currently there is no concept of package data 2025-01-14T07:58:28,948 directory, all directories are treated like packages. 2025-01-14T07:58:28,949 ******************************************************************************** 2025-01-14T07:58:28,950 !! 2025-01-14T07:58:28,950 check.warn(importable) 2025-01-14T07:58:28,951 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration. 2025-01-14T07:58:28,951 !! 2025-01-14T07:58:28,953 ******************************************************************************** 2025-01-14T07:58:28,953 ############################ 2025-01-14T07:58:28,954 # Package would be ignored # 2025-01-14T07:58:28,954 ############################ 2025-01-14T07:58:28,954 Python recognizes 'topaz.pretrained.denoise' as an importable package[^1], 2025-01-14T07:58:28,955 but it is absent from setuptools' `packages` configuration. 2025-01-14T07:58:28,956 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-14T07:58:28,956 package, please make sure that 'topaz.pretrained.denoise' is explicitly added 2025-01-14T07:58:28,956 to the `packages` configuration field. 2025-01-14T07:58:28,957 Alternatively, you can also rely on setuptools' discovery methods 2025-01-14T07:58:28,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-14T07:58:28,958 instead of `find_packages(...)`/`find:`). 2025-01-14T07:58:28,959 You can read more about "package discovery" on setuptools documentation page: 2025-01-14T07:58:28,960 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-14T07:58:28,961 If you don't want 'topaz.pretrained.denoise' to be distributed and are 2025-01-14T07:58:28,961 already explicitly excluding 'topaz.pretrained.denoise' via 2025-01-14T07:58:28,962 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-14T07:58:28,962 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-14T07:58:28,963 combination with a more fine grained `package-data` configuration. 2025-01-14T07:58:28,964 You can read more about "package data files" on setuptools documentation page: 2025-01-14T07:58:28,965 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-14T07:58:28,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-14T07:58:28,967 even if it does not contain any `.py` files. 2025-01-14T07:58:28,968 On the other hand, currently there is no concept of package data 2025-01-14T07:58:28,968 directory, all directories are treated like packages. 2025-01-14T07:58:28,973 ******************************************************************************** 2025-01-14T07:58:28,975 !! 2025-01-14T07:58:28,976 check.warn(importable) 2025-01-14T07:58:28,980 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration. 2025-01-14T07:58:28,984 !! 2025-01-14T07:58:28,992 ******************************************************************************** 2025-01-14T07:58:28,993 ############################ 2025-01-14T07:58:28,998 # Package would be ignored # 2025-01-14T07:58:28,999 ############################ 2025-01-14T07:58:28,999 Python recognizes 'topaz.pretrained.detector' as an importable package[^1], 2025-01-14T07:58:29,000 but it is absent from setuptools' `packages` configuration. 2025-01-14T07:58:29,001 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-14T07:58:29,002 package, please make sure that 'topaz.pretrained.detector' is explicitly added 2025-01-14T07:58:29,002 to the `packages` configuration field. 2025-01-14T07:58:29,004 Alternatively, you can also rely on setuptools' discovery methods 2025-01-14T07:58:29,004 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-14T07:58:29,005 instead of `find_packages(...)`/`find:`). 2025-01-14T07:58:29,006 You can read more about "package discovery" on setuptools documentation page: 2025-01-14T07:58:29,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-14T07:58:29,009 If you don't want 'topaz.pretrained.detector' to be distributed and are 2025-01-14T07:58:29,009 already explicitly excluding 'topaz.pretrained.detector' via 2025-01-14T07:58:29,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-14T07:58:29,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-14T07:58:29,010 combination with a more fine grained `package-data` configuration. 2025-01-14T07:58:29,011 You can read more about "package data files" on setuptools documentation page: 2025-01-14T07:58:29,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-14T07:58:29,013 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-14T07:58:29,014 even if it does not contain any `.py` files. 2025-01-14T07:58:29,014 On the other hand, currently there is no concept of package data 2025-01-14T07:58:29,015 directory, all directories are treated like packages. 2025-01-14T07:58:29,015 ******************************************************************************** 2025-01-14T07:58:29,016 !! 2025-01-14T07:58:29,016 check.warn(importable) 2025-01-14T07:58:29,017 creating build/lib/topaz/gui 2025-01-14T07:58:29,017 copying topaz/gui/topaz.html -> build/lib/topaz/gui 2025-01-14T07:58:29,018 creating build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,018 copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,019 copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,020 copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,167 copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,376 copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:29,446 copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:30,155 copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2025-01-14T07:58:30,219 creating build/lib/topaz/pretrained/detector 2025-01-14T07:58:30,221 copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector 2025-01-14T07:58:30,250 copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector 2025-01-14T07:58:30,365 copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector 2025-01-14T07:58:30,387 copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector 2025-01-14T07:58:31,987 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-14T07:58:31,988 !! 2025-01-14T07:58:31,989 ******************************************************************************** 2025-01-14T07:58:31,990 Please avoid running ``setup.py`` directly. 2025-01-14T07:58:31,991 Instead, use pypa/build, pypa/installer or other 2025-01-14T07:58:31,991 standards-based tools. 2025-01-14T07:58:31,993 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-14T07:58:31,994 ******************************************************************************** 2025-01-14T07:58:31,995 !! 2025-01-14T07:58:31,996 self.initialize_options() 2025-01-14T07:58:32,026 installing to build/bdist.linux-armv7l/wheel 2025-01-14T07:58:32,027 running install 2025-01-14T07:58:32,059 running install_lib 2025-01-14T07:58:32,087 creating build/bdist.linux-armv7l/wheel 2025-01-14T07:58:32,090 creating build/bdist.linux-armv7l/wheel/topaz 2025-01-14T07:58:32,092 creating build/bdist.linux-armv7l/wheel/topaz/utils 2025-01-14T07:58:32,094 copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,096 copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,098 copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,100 copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,102 copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,105 creating build/bdist.linux-armv7l/wheel/topaz/utils/data 2025-01-14T07:58:32,107 copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,110 copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,113 copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,115 copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,118 copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,121 copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,124 copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2025-01-14T07:58:32,127 copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,130 copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2025-01-14T07:58:32,133 copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:32,136 creating build/bdist.linux-armv7l/wheel/topaz/model 2025-01-14T07:58:32,137 copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2025-01-14T07:58:32,139 copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2025-01-14T07:58:32,142 copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2025-01-14T07:58:32,144 copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2025-01-14T07:58:32,152 creating build/bdist.linux-armv7l/wheel/topaz/model/features 2025-01-14T07:58:32,153 copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2025-01-14T07:58:32,156 copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2025-01-14T07:58:32,158 copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2025-01-14T07:58:32,161 copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2025-01-14T07:58:32,164 copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2025-01-14T07:58:32,167 copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2025-01-14T07:58:32,169 copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:32,173 creating build/bdist.linux-armv7l/wheel/topaz/pretrained 2025-01-14T07:58:32,175 creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector 2025-01-14T07:58:32,176 copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2025-01-14T07:58:32,217 copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2025-01-14T07:58:32,354 copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2025-01-14T07:58:32,377 copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2025-01-14T07:58:32,464 creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise 2025-01-14T07:58:32,465 copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:32,717 copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:34,912 copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:35,023 copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:35,141 copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:35,227 copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:35,278 copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2025-01-14T07:58:35,280 copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,282 copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,285 copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,287 copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,289 copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,293 creating build/bdist.linux-armv7l/wheel/topaz/denoising 2025-01-14T07:58:35,294 copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2025-01-14T07:58:35,296 copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2025-01-14T07:58:35,299 copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2025-01-14T07:58:35,301 copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2025-01-14T07:58:35,304 copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,306 copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,308 copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,312 creating build/bdist.linux-armv7l/wheel/topaz/commands 2025-01-14T07:58:35,313 copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,315 copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,317 copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,319 copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,321 copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,324 copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,326 copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,327 copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,330 copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,331 copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,334 copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,336 copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,338 copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,340 copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,342 copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,344 copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,346 copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,348 copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,351 copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,353 copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,355 copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,357 copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2025-01-14T07:58:35,359 copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,361 copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,364 creating build/bdist.linux-armv7l/wheel/topaz/transform 2025-01-14T07:58:35,365 copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform 2025-01-14T07:58:35,367 copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform 2025-01-14T07:58:35,369 copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,372 copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,375 copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz 2025-01-14T07:58:35,377 creating build/bdist.linux-armv7l/wheel/topaz/gui 2025-01-14T07:58:35,379 copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui 2025-01-14T07:58:35,393 running install_egg_info 2025-01-14T07:58:35,426 Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.7-py3.11.egg-info 2025-01-14T07:58:35,439 running install_scripts 2025-01-14T07:58:35,457 creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.7.dist-info/WHEEL 2025-01-14T07:58:35,460 creating '/tmp/pip-wheel-hhqhi238/topaz_em-0.3.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-14T07:58:35,462 adding 'topaz/__init__.py' 2025-01-14T07:58:35,463 adding 'topaz/_version.py' 2025-01-14T07:58:35,465 adding 'topaz/algorithms.py' 2025-01-14T07:58:35,466 adding 'topaz/cuda.py' 2025-01-14T07:58:35,469 adding 'topaz/denoise.py' 2025-01-14T07:58:35,471 adding 'topaz/extract.py' 2025-01-14T07:58:35,473 adding 'topaz/filters.py' 2025-01-14T07:58:35,475 adding 'topaz/main.py' 2025-01-14T07:58:35,477 adding 'topaz/methods.py' 2025-01-14T07:58:35,479 adding 'topaz/metrics.py' 2025-01-14T07:58:35,480 adding 'topaz/mrc.py' 2025-01-14T07:58:35,482 adding 'topaz/predict.py' 2025-01-14T07:58:35,484 adding 'topaz/stats.py' 2025-01-14T07:58:35,485 adding 'topaz/torch.py' 2025-01-14T07:58:35,489 adding 'topaz/training.py' 2025-01-14T07:58:35,492 adding 'topaz/commands/__init__.py' 2025-01-14T07:58:35,493 adding 'topaz/commands/boxes_to_coordinates.py' 2025-01-14T07:58:35,495 adding 'topaz/commands/convert.py' 2025-01-14T07:58:35,496 adding 'topaz/commands/coordinates_to_boxes.py' 2025-01-14T07:58:35,497 adding 'topaz/commands/coordinates_to_eman2_json.py' 2025-01-14T07:58:35,499 adding 'topaz/commands/coordinates_to_star.py' 2025-01-14T07:58:35,501 adding 'topaz/commands/denoise.py' 2025-01-14T07:58:35,502 adding 'topaz/commands/denoise3d.py' 2025-01-14T07:58:35,503 adding 'topaz/commands/downsample.py' 2025-01-14T07:58:35,505 adding 'topaz/commands/extract.py' 2025-01-14T07:58:35,506 adding 'topaz/commands/gui.py' 2025-01-14T07:58:35,507 adding 'topaz/commands/normalize.py' 2025-01-14T07:58:35,508 adding 'topaz/commands/particle_stack.py' 2025-01-14T07:58:35,509 adding 'topaz/commands/precision_recall_curve.py' 2025-01-14T07:58:35,511 adding 'topaz/commands/preprocess.py' 2025-01-14T07:58:35,512 adding 'topaz/commands/scale_coordinates.py' 2025-01-14T07:58:35,513 adding 'topaz/commands/segment.py' 2025-01-14T07:58:35,515 adding 'topaz/commands/split.py' 2025-01-14T07:58:35,516 adding 'topaz/commands/star_particles_threshold.py' 2025-01-14T07:58:35,517 adding 'topaz/commands/star_to_coordinates.py' 2025-01-14T07:58:35,519 adding 'topaz/commands/train.py' 2025-01-14T07:58:35,520 adding 'topaz/commands/train_test_split.py' 2025-01-14T07:58:35,522 adding 'topaz/denoising/__init__.py' 2025-01-14T07:58:35,524 adding 'topaz/denoising/datasets.py' 2025-01-14T07:58:35,527 adding 'topaz/denoising/models.py' 2025-01-14T07:58:35,528 adding 'topaz/denoising/utils.py' 2025-01-14T07:58:35,582 adding 'topaz/gui/topaz.html' 2025-01-14T07:58:35,587 adding 'topaz/model/__init__.py' 2025-01-14T07:58:35,589 adding 'topaz/model/classifier.py' 2025-01-14T07:58:35,590 adding 'topaz/model/factory.py' 2025-01-14T07:58:35,591 adding 'topaz/model/generative.py' 2025-01-14T07:58:35,592 adding 'topaz/model/utils.py' 2025-01-14T07:58:35,594 adding 'topaz/model/features/__init__.py' 2025-01-14T07:58:35,595 adding 'topaz/model/features/basic.py' 2025-01-14T07:58:35,597 adding 'topaz/model/features/densenet.py' 2025-01-14T07:58:35,599 adding 'topaz/model/features/msnet.py' 2025-01-14T07:58:35,601 adding 'topaz/model/features/resnet.py' 2025-01-14T07:58:35,604 adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav' 2025-01-14T07:58:35,910 adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav' 2025-01-14T07:58:37,712 adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav' 2025-01-14T07:58:39,573 adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav' 2025-01-14T07:58:40,241 adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav' 2025-01-14T07:58:40,949 adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav' 2025-01-14T07:58:41,379 adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav' 2025-01-14T07:58:41,675 adding 'topaz/pretrained/detector/resnet16_u32.sav' 2025-01-14T07:58:42,808 adding 'topaz/pretrained/detector/resnet16_u64.sav' 2025-01-14T07:58:43,059 adding 'topaz/pretrained/detector/resnet8_u32.sav' 2025-01-14T07:58:43,866 adding 'topaz/pretrained/detector/resnet8_u64.sav' 2025-01-14T07:58:43,900 adding 'topaz/transform/__init__.py' 2025-01-14T07:58:43,902 adding 'topaz/transform/scaled_gaussian_mixture.py' 2025-01-14T07:58:43,904 adding 'topaz/utils/__init__.py' 2025-01-14T07:58:43,906 adding 'topaz/utils/conversions.py' 2025-01-14T07:58:43,909 adding 'topaz/utils/files.py' 2025-01-14T07:58:43,911 adding 'topaz/utils/image.py' 2025-01-14T07:58:43,913 adding 'topaz/utils/picks.py' 2025-01-14T07:58:43,914 adding 'topaz/utils/printing.py' 2025-01-14T07:58:43,916 adding 'topaz/utils/star.py' 2025-01-14T07:58:43,918 adding 'topaz/utils/data/__init__.py' 2025-01-14T07:58:43,920 adding 'topaz/utils/data/coordinates.py' 2025-01-14T07:58:43,922 adding 'topaz/utils/data/loader.py' 2025-01-14T07:58:43,924 adding 'topaz/utils/data/memory_mapped_data.py' 2025-01-14T07:58:43,926 adding 'topaz/utils/data/partition.py' 2025-01-14T07:58:43,928 adding 'topaz/utils/data/sampler.py' 2025-01-14T07:58:43,930 adding 'topaz/utils/data/train_test_split_micrographs.py' 2025-01-14T07:58:43,937 adding 'topaz_em-0.3.7.dist-info/LICENSE' 2025-01-14T07:58:43,939 adding 'topaz_em-0.3.7.dist-info/METADATA' 2025-01-14T07:58:43,941 adding 'topaz_em-0.3.7.dist-info/WHEEL' 2025-01-14T07:58:43,942 adding 'topaz_em-0.3.7.dist-info/entry_points.txt' 2025-01-14T07:58:43,943 adding 'topaz_em-0.3.7.dist-info/top_level.txt' 2025-01-14T07:58:43,945 adding 'topaz_em-0.3.7.dist-info/RECORD' 2025-01-14T07:58:44,470 removing build/bdist.linux-armv7l/wheel 2025-01-14T07:58:44,623 Building wheel for topaz-em (setup.py): finished with status 'done' 2025-01-14T07:58:45,130 Created wheel for topaz-em: filename=topaz_em-0.3.7-py3-none-any.whl size=48203537 sha256=0c756dce2522eb38ba1cd3816bedc647836d775670e16d9c2bdaad42b0d74269 2025-01-14T07:58:45,131 Stored in directory: /tmp/pip-ephem-wheel-cache-lfyxz6it/wheels/11/ea/44/e1802edd8c9075c36d18f1b74bc8dd8c9b1549b27346008746 2025-01-14T07:58:45,159 Successfully built topaz-em 2025-01-14T07:58:46,278 Removed build tracker: '/tmp/pip-build-tracker-z8no2b2n'