2025-01-16T23:11:14,593 Created temporary directory: /tmp/pip-build-tracker-1o1meyz7
2025-01-16T23:11:14,594 Initialized build tracking at /tmp/pip-build-tracker-1o1meyz7
2025-01-16T23:11:14,595 Created build tracker: /tmp/pip-build-tracker-1o1meyz7
2025-01-16T23:11:14,595 Entered build tracker: /tmp/pip-build-tracker-1o1meyz7
2025-01-16T23:11:14,596 Created temporary directory: /tmp/pip-wheel-ngoft52h
2025-01-16T23:11:14,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-_umyvbgy
2025-01-16T23:11:14,644 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-16T23:11:14,646 2 location(s) to search for versions of rsalor:
2025-01-16T23:11:14,646 * https://pypi.org/simple/rsalor/
2025-01-16T23:11:14,646 * https://www.piwheels.org/simple/rsalor/
2025-01-16T23:11:14,647 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-01-16T23:11:14,648 Getting page https://pypi.org/simple/rsalor/
2025-01-16T23:11:14,649 Found index url https://pypi.org/simple/
2025-01-16T23:11:14,871 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-01-16T23:11:14,874   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-01-16T23:11:14,875   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-01-16T23:11:14,876   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-01-16T23:11:14,877   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-01-16T23:11:14,878   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-01-16T23:11:14,879   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-01-16T23:11:14,880   Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6
2025-01-16T23:11:14,881   Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7
2025-01-16T23:11:14,882   Found link https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.8
2025-01-16T23:11:14,883   Found link https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.9
2025-01-16T23:11:14,883 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-01-16T23:11:14,884 Getting page https://www.piwheels.org/simple/rsalor/
2025-01-16T23:11:14,885 Found index url https://www.piwheels.org/simple/
2025-01-16T23:11:15,050 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-01-16T23:11:15,058   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv6l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,058   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv7l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,059   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,060   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,060   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,061   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,061   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,062   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,062   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,063   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,063   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,064   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,064   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,065   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,066   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,066   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,067   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,067   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,068   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,068   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,069   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,069   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,070   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,070   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-16T23:11:15,071 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-01-16T23:11:15,071 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-01-16T23:11:15,091 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-01-16T23:11:15,093 Collecting rsalor==1.0.9
2025-01-16T23:11:15,095   Created temporary directory: /tmp/pip-unpack-rlx8qnfd
2025-01-16T23:11:15,315   Downloading rsalor-1.0.9.tar.gz (48 kB)
2025-01-16T23:11:15,440   Added rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-1o1meyz7'
2025-01-16T23:11:15,442   Running setup.py (path:/tmp/pip-wheel-ngoft52h/rsalor_656edf32be88400faa1ec778ea528bfc/setup.py) egg_info for package rsalor
2025-01-16T23:11:15,442   Created temporary directory: /tmp/pip-pip-egg-info-9tmn2sm0
2025-01-16T23:11:15,443   Preparing metadata (setup.py): started
2025-01-16T23:11:15,445   Running command python setup.py egg_info
2025-01-16T23:11:16,481   running egg_info
2025-01-16T23:11:16,508   creating /tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info
2025-01-16T23:11:16,509   writing /tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/PKG-INFO
2025-01-16T23:11:16,513   writing dependency_links to /tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/dependency_links.txt
2025-01-16T23:11:16,514   writing requirements to /tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/requires.txt
2025-01-16T23:11:16,515   writing top-level names to /tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/top_level.txt
2025-01-16T23:11:16,517   writing manifest file '/tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/SOURCES.txt'
2025-01-16T23:11:16,632   reading manifest file '/tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/SOURCES.txt'
2025-01-16T23:11:16,634   reading manifest template 'MANIFEST.in'
2025-01-16T23:11:16,641   warning: no previously-included files found matching 'fig/*'
2025-01-16T23:11:16,641   warning: no previously-included files found matching 'src/*'
2025-01-16T23:11:16,642   warning: no previously-included files found matching 'tmp/*'
2025-01-16T23:11:16,642   warning: no previously-included files found matching '0_*'
2025-01-16T23:11:16,643   warning: no previously-included files found matching 'conda-env.yml'
2025-01-16T23:11:16,644   warning: no previously-included files found matching 'test_data/*'
2025-01-16T23:11:16,644   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-16T23:11:16,645   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-16T23:11:16,646   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-16T23:11:16,646   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-16T23:11:16,647   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-16T23:11:16,648   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-16T23:11:16,649   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-01-16T23:11:16,649   adding license file 'LICENCE'
2025-01-16T23:11:16,652   writing manifest file '/tmp/pip-pip-egg-info-9tmn2sm0/rsalor.egg-info/SOURCES.txt'
2025-01-16T23:11:16,762   Preparing metadata (setup.py): finished with status 'done'
2025-01-16T23:11:16,766   Source in /tmp/pip-wheel-ngoft52h/rsalor_656edf32be88400faa1ec778ea528bfc has version 1.0.9, which satisfies requirement rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz
2025-01-16T23:11:16,767   Removed rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-1o1meyz7'
2025-01-16T23:11:16,773 Created temporary directory: /tmp/pip-unpack-0pnevjcz
2025-01-16T23:11:16,774 Created temporary directory: /tmp/pip-unpack-7x6zjp9t
2025-01-16T23:11:16,775 Building wheels for collected packages: rsalor
2025-01-16T23:11:16,778   Created temporary directory: /tmp/pip-wheel-8q6jwoz1
2025-01-16T23:11:16,779   Building wheel for rsalor (setup.py): started
2025-01-16T23:11:16,780   Destination directory: /tmp/pip-wheel-8q6jwoz1
2025-01-16T23:11:16,781   Running command python setup.py bdist_wheel
2025-01-16T23:11:17,786   running bdist_wheel
2025-01-16T23:11:17,914   running build
2025-01-16T23:11:17,915   running build_py
2025-01-16T23:11:17,944   creating build/lib.linux-armv7l-cpython-311/rsalor
2025-01-16T23:11:17,946   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-16T23:11:17,948   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-16T23:11:17,952   creating build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-16T23:11:17,953   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-16T23:11:17,955   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-16T23:11:17,957   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-16T23:11:17,960   creating build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,961   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,963   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,965   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,967   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,969   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-16T23:11:17,971   creating build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,973   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,975   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,977   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,979   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,980   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-16T23:11:17,983   creating build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-16T23:11:17,984   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-16T23:11:17,986   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-16T23:11:17,989   creating build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:17,990   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:17,992   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:17,994   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:17,996   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:17,999   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:18,000   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-16T23:11:18,007   running build_ext
2025-01-16T23:11:18,555   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-01-16T23:11:18,557   creating build/temp.linux-armv7l-cpython-311/rsalor/weights
2025-01-16T23:11:18,559   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3
2025-01-16T23:11:20,223   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-01-16T23:11:20,223   rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-01-16T23:11:20,224      38 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-01-16T23:11:20,225         |                    ~~^~~~~~~~~~~
2025-01-16T23:11:20,695   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3
2025-01-16T23:11:28,572   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -O3
2025-01-16T23:11:28,866   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-16T23:11:28,867   !!

2025-01-16T23:11:28,868           ********************************************************************************
2025-01-16T23:11:28,868           Please avoid running ``setup.py`` directly.
2025-01-16T23:11:28,869           Instead, use pypa/build, pypa/installer or other
2025-01-16T23:11:28,869           standards-based tools.

2025-01-16T23:11:28,870           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-16T23:11:28,870           ********************************************************************************

2025-01-16T23:11:28,871   !!
2025-01-16T23:11:28,872     self.initialize_options()
2025-01-16T23:11:28,893   installing to build/bdist.linux-armv7l/wheel
2025-01-16T23:11:28,893   running install
2025-01-16T23:11:28,918   running install_lib
2025-01-16T23:11:28,945   creating build/bdist.linux-armv7l/wheel
2025-01-16T23:11:28,947   creating build/bdist.linux-armv7l/wheel/rsalor
2025-01-16T23:11:28,949   copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-16T23:11:28,951   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-01-16T23:11:28,952   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-16T23:11:28,954   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-16T23:11:28,956   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-16T23:11:28,958   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-01-16T23:11:28,959   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-16T23:11:28,962   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-16T23:11:28,963   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-16T23:11:28,966   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-16T23:11:28,967   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-16T23:11:28,970   copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-16T23:11:28,973   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-01-16T23:11:28,974   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-16T23:11:28,977   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-16T23:11:28,979   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-16T23:11:28,981   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-16T23:11:28,984   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-16T23:11:28,986   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-01-16T23:11:28,988   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-16T23:11:28,990   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-16T23:11:28,999   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-16T23:11:29,002   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-01-16T23:11:29,003   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,005   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,007   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,009   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,011   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,013   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-16T23:11:29,015   running install_egg_info
2025-01-16T23:11:29,048   running egg_info
2025-01-16T23:11:29,075   writing rsalor.egg-info/PKG-INFO
2025-01-16T23:11:29,079   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-01-16T23:11:29,081   writing requirements to rsalor.egg-info/requires.txt
2025-01-16T23:11:29,082   writing top-level names to rsalor.egg-info/top_level.txt
2025-01-16T23:11:29,122   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-16T23:11:29,126   reading manifest template 'MANIFEST.in'
2025-01-16T23:11:29,136   warning: no previously-included files found matching 'fig/*'
2025-01-16T23:11:29,137   warning: no previously-included files found matching 'src/*'
2025-01-16T23:11:29,138   warning: no previously-included files found matching 'tmp/*'
2025-01-16T23:11:29,138   warning: no previously-included files found matching '0_*'
2025-01-16T23:11:29,139   warning: no previously-included files found matching 'conda-env.yml'
2025-01-16T23:11:29,140   warning: no previously-included files found matching 'test_data/*'
2025-01-16T23:11:29,141   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-16T23:11:29,142   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-16T23:11:29,143   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-16T23:11:29,144   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-16T23:11:29,145   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-16T23:11:29,146   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-16T23:11:29,147   adding license file 'LICENCE'
2025-01-16T23:11:29,152   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-16T23:11:29,154   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.9-py3.11.egg-info
2025-01-16T23:11:29,177   running install_scripts
2025-01-16T23:11:29,262   creating build/bdist.linux-armv7l/wheel/rsalor-1.0.9.dist-info/WHEEL
2025-01-16T23:11:29,266   creating '/tmp/pip-wheel-8q6jwoz1/rsalor-1.0.9-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-16T23:11:29,269   adding 'rsalor/__init__.py'
2025-01-16T23:11:29,274   adding 'rsalor/msa.py'
2025-01-16T23:11:29,277   adding 'rsalor/rsa/__init__.py'
2025-01-16T23:11:29,279   adding 'rsalor/rsa/rsa_biopython.py'
2025-01-16T23:11:29,281   adding 'rsalor/rsa/rsa_dssp.py'
2025-01-16T23:11:29,283   adding 'rsalor/rsa/rsa_music.py'
2025-01-16T23:11:29,285   adding 'rsalor/rsa/rsa_solver.py'
2025-01-16T23:11:29,288   adding 'rsalor/sequence/__init__.py'
2025-01-16T23:11:29,291   adding 'rsalor/sequence/amino_acid.py'
2025-01-16T23:11:29,293   adding 'rsalor/sequence/fasta_reader.py'
2025-01-16T23:11:29,295   adding 'rsalor/sequence/mutation.py'
2025-01-16T23:11:29,297   adding 'rsalor/sequence/pairwise_alignment.py'
2025-01-16T23:11:29,299   adding 'rsalor/sequence/sequence.py'
2025-01-16T23:11:29,300   adding 'rsalor/structure/__init__.py'
2025-01-16T23:11:29,302   adding 'rsalor/structure/residue.py'
2025-01-16T23:11:29,304   adding 'rsalor/structure/structure.py'
2025-01-16T23:11:29,307   adding 'rsalor/utils/CSV.py'
2025-01-16T23:11:29,309   adding 'rsalor/utils/__init__.py'
2025-01-16T23:11:29,311   adding 'rsalor/utils/ali_to_fasta.py'
2025-01-16T23:11:29,312   adding 'rsalor/utils/logger.py'
2025-01-16T23:11:29,314   adding 'rsalor/utils/utils.py'
2025-01-16T23:11:29,316   adding 'rsalor/weights/__init__.py'
2025-01-16T23:11:29,318   adding 'rsalor/weights/compute_weights.py'
2025-01-16T23:11:29,414   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so'
2025-01-16T23:11:29,419   adding 'rsalor-1.0.9.dist-info/LICENCE'
2025-01-16T23:11:29,421   adding 'rsalor-1.0.9.dist-info/METADATA'
2025-01-16T23:11:29,422   adding 'rsalor-1.0.9.dist-info/WHEEL'
2025-01-16T23:11:29,424   adding 'rsalor-1.0.9.dist-info/top_level.txt'
2025-01-16T23:11:29,425   adding 'rsalor-1.0.9.dist-info/RECORD'
2025-01-16T23:11:29,430   removing build/bdist.linux-armv7l/wheel
2025-01-16T23:11:29,586   Building wheel for rsalor (setup.py): finished with status 'done'
2025-01-16T23:11:29,591   Created wheel for rsalor: filename=rsalor-1.0.9-cp311-cp311-linux_armv7l.whl size=226689 sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7
2025-01-16T23:11:29,592   Stored in directory: /tmp/pip-ephem-wheel-cache-_umyvbgy/wheels/6a/ce/bb/f3f216b6d92af8caa0e1a86a30d13c823446bb30c6b2e4d90c
2025-01-16T23:11:29,603 Successfully built rsalor
2025-01-16T23:11:29,614 Removed build tracker: '/tmp/pip-build-tracker-1o1meyz7'