2025-01-17T00:11:39,398 Disabling truststore because Python version isn't 3.10+ 2025-01-17T00:11:39,875 Created temporary directory: /tmp/pip-build-tracker-bd596yr9 2025-01-17T00:11:39,876 Initialized build tracking at /tmp/pip-build-tracker-bd596yr9 2025-01-17T00:11:39,876 Created build tracker: /tmp/pip-build-tracker-bd596yr9 2025-01-17T00:11:39,876 Entered build tracker: /tmp/pip-build-tracker-bd596yr9 2025-01-17T00:11:39,877 Created temporary directory: /tmp/pip-wheel-inz0afd_ 2025-01-17T00:11:39,883 Created temporary directory: /tmp/pip-ephem-wheel-cache-0fuhey1m 2025-01-17T00:11:39,929 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-17T00:11:39,932 2 location(s) to search for versions of rsalor: 2025-01-17T00:11:39,932 * https://pypi.org/simple/rsalor/ 2025-01-17T00:11:39,932 * https://www.piwheels.org/simple/rsalor/ 2025-01-17T00:11:39,932 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2025-01-17T00:11:39,933 Getting page https://pypi.org/simple/rsalor/ 2025-01-17T00:11:39,934 Found index url https://pypi.org/simple/ 2025-01-17T00:11:40,032 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2025-01-17T00:11:40,035 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2025-01-17T00:11:40,035 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2025-01-17T00:11:40,036 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2025-01-17T00:11:40,037 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2025-01-17T00:11:40,037 Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4 2025-01-17T00:11:40,038 Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5 2025-01-17T00:11:40,038 Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6 2025-01-17T00:11:40,039 Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7 2025-01-17T00:11:40,039 Found link https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.8 2025-01-17T00:11:40,040 Found link https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.9 2025-01-17T00:11:40,040 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2025-01-17T00:11:40,040 Getting page https://www.piwheels.org/simple/rsalor/ 2025-01-17T00:11:40,042 Found index url https://www.piwheels.org/simple/ 2025-01-17T00:11:40,086 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2025-01-17T00:11:40,094 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,094 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,095 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv6l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,095 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv7l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,095 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,095 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,096 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,096 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,096 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,096 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,096 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,097 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,097 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,097 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,097 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,097 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,098 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,098 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,098 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,098 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,098 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,099 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,099 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,099 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,099 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,099 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-17T00:11:40,100 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2025-01-17T00:11:40,100 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2025-01-17T00:11:40,117 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2025-01-17T00:11:40,119 Collecting rsalor==1.0.9 2025-01-17T00:11:40,121 Created temporary directory: /tmp/pip-unpack-oycc9hxy 2025-01-17T00:11:40,214 Downloading rsalor-1.0.9.tar.gz (48 kB) 2025-01-17T00:11:40,346 Added rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-bd596yr9' 2025-01-17T00:11:40,347 Running setup.py (path:/tmp/pip-wheel-inz0afd_/rsalor_3691db6ff4bb43a0bc3f32041c098bba/setup.py) egg_info for package rsalor 2025-01-17T00:11:40,348 Created temporary directory: /tmp/pip-pip-egg-info-z3ib_mrg 2025-01-17T00:11:40,348 Preparing metadata (setup.py): started 2025-01-17T00:11:40,349 Running command python setup.py egg_info 2025-01-17T00:11:41,416 running egg_info 2025-01-17T00:11:41,443 creating /tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info 2025-01-17T00:11:41,444 writing /tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/PKG-INFO 2025-01-17T00:11:41,448 writing dependency_links to /tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/dependency_links.txt 2025-01-17T00:11:41,450 writing requirements to /tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/requires.txt 2025-01-17T00:11:41,451 writing top-level names to /tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/top_level.txt 2025-01-17T00:11:41,452 writing manifest file '/tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/SOURCES.txt' 2025-01-17T00:11:41,569 reading manifest file '/tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/SOURCES.txt' 2025-01-17T00:11:41,570 reading manifest template 'MANIFEST.in' 2025-01-17T00:11:41,578 warning: no previously-included files found matching 'fig/*' 2025-01-17T00:11:41,578 warning: no previously-included files found matching 'src/*' 2025-01-17T00:11:41,579 warning: no previously-included files found matching 'tmp/*' 2025-01-17T00:11:41,579 warning: no previously-included files found matching '0_*' 2025-01-17T00:11:41,580 warning: no previously-included files found matching 'conda-env.yml' 2025-01-17T00:11:41,580 warning: no previously-included files found matching 'test_data/*' 2025-01-17T00:11:41,581 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-17T00:11:41,582 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-17T00:11:41,583 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-17T00:11:41,583 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-17T00:11:41,584 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-17T00:11:41,585 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-17T00:11:41,586 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2025-01-17T00:11:41,586 adding license file 'LICENCE' 2025-01-17T00:11:41,590 writing manifest file '/tmp/pip-pip-egg-info-z3ib_mrg/rsalor.egg-info/SOURCES.txt' 2025-01-17T00:11:41,678 Preparing metadata (setup.py): finished with status 'done' 2025-01-17T00:11:41,683 Source in /tmp/pip-wheel-inz0afd_/rsalor_3691db6ff4bb43a0bc3f32041c098bba has version 1.0.9, which satisfies requirement rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz 2025-01-17T00:11:41,684 Removed rsalor==1.0.9 from https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-bd596yr9' 2025-01-17T00:11:41,692 Created temporary directory: /tmp/pip-unpack-p3ew_ycr 2025-01-17T00:11:41,693 Created temporary directory: /tmp/pip-unpack-vo4h6rb1 2025-01-17T00:11:41,693 Building wheels for collected packages: rsalor 2025-01-17T00:11:41,697 Created temporary directory: /tmp/pip-wheel-ykn4dcpc 2025-01-17T00:11:41,697 Building wheel for rsalor (setup.py): started 2025-01-17T00:11:41,698 Destination directory: /tmp/pip-wheel-ykn4dcpc 2025-01-17T00:11:41,698 Running command python setup.py bdist_wheel 2025-01-17T00:11:42,720 running bdist_wheel 2025-01-17T00:11:42,854 running build 2025-01-17T00:11:42,855 running build_py 2025-01-17T00:11:42,884 creating build/lib.linux-armv7l-cpython-39/rsalor 2025-01-17T00:11:42,886 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-17T00:11:42,890 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-17T00:11:42,894 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,895 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,897 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,898 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,900 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,903 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-17T00:11:42,906 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-17T00:11:42,907 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-17T00:11:42,909 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-17T00:11:42,911 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,913 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,914 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,917 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,919 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,921 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-17T00:11:42,924 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-17T00:11:42,925 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-17T00:11:42,927 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-17T00:11:42,929 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-17T00:11:42,932 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,934 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,938 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,941 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,943 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,945 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,948 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-17T00:11:42,956 running build_ext 2025-01-17T00:11:43,439 building 'rsalor.weights.lib_computeWeightsBackend' extension 2025-01-17T00:11:43,440 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2025-01-17T00:11:43,442 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 2025-01-17T00:11:44,910 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2025-01-17T00:11:44,910 rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2025-01-17T00:11:44,911 38 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2025-01-17T00:11:44,911 | ~~^~~~~~~~~~~ 2025-01-17T00:11:45,334 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 2025-01-17T00:11:49,739 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -O3 2025-01-17T00:11:50,056 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-17T00:11:50,057 !! 2025-01-17T00:11:50,057 ******************************************************************************** 2025-01-17T00:11:50,057 Please avoid running ``setup.py`` directly. 2025-01-17T00:11:50,057 Instead, use pypa/build, pypa/installer or other 2025-01-17T00:11:50,057 standards-based tools. 2025-01-17T00:11:50,058 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-17T00:11:50,058 ******************************************************************************** 2025-01-17T00:11:50,058 !! 2025-01-17T00:11:50,058 self.initialize_options() 2025-01-17T00:11:50,082 installing to build/bdist.linux-armv7l/wheel 2025-01-17T00:11:50,082 running install 2025-01-17T00:11:50,108 running install_lib 2025-01-17T00:11:50,135 creating build/bdist.linux-armv7l/wheel 2025-01-17T00:11:50,137 creating build/bdist.linux-armv7l/wheel/rsalor 2025-01-17T00:11:50,139 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2025-01-17T00:11:50,140 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-17T00:11:50,142 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-17T00:11:50,144 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-17T00:11:50,145 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-17T00:11:50,148 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-17T00:11:50,150 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-17T00:11:50,152 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2025-01-17T00:11:50,153 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-17T00:11:50,155 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-17T00:11:50,157 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-17T00:11:50,172 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2025-01-17T00:11:50,173 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-17T00:11:50,175 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-17T00:11:50,177 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-17T00:11:50,179 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-17T00:11:50,181 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-17T00:11:50,183 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2025-01-17T00:11:50,184 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-17T00:11:50,186 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-17T00:11:50,188 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-17T00:11:50,190 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2025-01-17T00:11:50,191 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,193 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,195 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,198 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,199 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,201 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-17T00:11:50,204 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-17T00:11:50,207 running install_egg_info 2025-01-17T00:11:50,240 running egg_info 2025-01-17T00:11:50,269 writing rsalor.egg-info/PKG-INFO 2025-01-17T00:11:50,273 writing dependency_links to rsalor.egg-info/dependency_links.txt 2025-01-17T00:11:50,274 writing requirements to rsalor.egg-info/requires.txt 2025-01-17T00:11:50,275 writing top-level names to rsalor.egg-info/top_level.txt 2025-01-17T00:11:50,313 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-17T00:11:50,317 reading manifest template 'MANIFEST.in' 2025-01-17T00:11:50,323 warning: no previously-included files found matching 'fig/*' 2025-01-17T00:11:50,324 warning: no previously-included files found matching 'src/*' 2025-01-17T00:11:50,324 warning: no previously-included files found matching 'tmp/*' 2025-01-17T00:11:50,325 warning: no previously-included files found matching '0_*' 2025-01-17T00:11:50,326 warning: no previously-included files found matching 'conda-env.yml' 2025-01-17T00:11:50,326 warning: no previously-included files found matching 'test_data/*' 2025-01-17T00:11:50,327 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-17T00:11:50,328 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-17T00:11:50,329 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-17T00:11:50,329 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-17T00:11:50,330 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-17T00:11:50,331 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-17T00:11:50,332 adding license file 'LICENCE' 2025-01-17T00:11:50,336 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-17T00:11:50,337 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.9-py3.9.egg-info 2025-01-17T00:11:50,349 running install_scripts 2025-01-17T00:11:50,404 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.9.dist-info/WHEEL 2025-01-17T00:11:50,406 creating '/tmp/pip-wheel-ykn4dcpc/rsalor-1.0.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-17T00:11:50,409 adding 'rsalor/__init__.py' 2025-01-17T00:11:50,414 adding 'rsalor/msa.py' 2025-01-17T00:11:50,416 adding 'rsalor/rsa/__init__.py' 2025-01-17T00:11:50,417 adding 'rsalor/rsa/rsa_biopython.py' 2025-01-17T00:11:50,419 adding 'rsalor/rsa/rsa_dssp.py' 2025-01-17T00:11:50,420 adding 'rsalor/rsa/rsa_music.py' 2025-01-17T00:11:50,422 adding 'rsalor/rsa/rsa_solver.py' 2025-01-17T00:11:50,424 adding 'rsalor/sequence/__init__.py' 2025-01-17T00:11:50,426 adding 'rsalor/sequence/amino_acid.py' 2025-01-17T00:11:50,428 adding 'rsalor/sequence/fasta_reader.py' 2025-01-17T00:11:50,429 adding 'rsalor/sequence/mutation.py' 2025-01-17T00:11:50,431 adding 'rsalor/sequence/pairwise_alignment.py' 2025-01-17T00:11:50,433 adding 'rsalor/sequence/sequence.py' 2025-01-17T00:11:50,434 adding 'rsalor/structure/__init__.py' 2025-01-17T00:11:50,436 adding 'rsalor/structure/residue.py' 2025-01-17T00:11:50,437 adding 'rsalor/structure/structure.py' 2025-01-17T00:11:50,440 adding 'rsalor/utils/CSV.py' 2025-01-17T00:11:50,442 adding 'rsalor/utils/__init__.py' 2025-01-17T00:11:50,443 adding 'rsalor/utils/ali_to_fasta.py' 2025-01-17T00:11:50,444 adding 'rsalor/utils/logger.py' 2025-01-17T00:11:50,446 adding 'rsalor/utils/utils.py' 2025-01-17T00:11:50,447 adding 'rsalor/weights/__init__.py' 2025-01-17T00:11:50,449 adding 'rsalor/weights/compute_weights.py' 2025-01-17T00:11:50,545 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2025-01-17T00:11:50,550 adding 'rsalor-1.0.9.dist-info/LICENCE' 2025-01-17T00:11:50,552 adding 'rsalor-1.0.9.dist-info/METADATA' 2025-01-17T00:11:50,553 adding 'rsalor-1.0.9.dist-info/WHEEL' 2025-01-17T00:11:50,554 adding 'rsalor-1.0.9.dist-info/top_level.txt' 2025-01-17T00:11:50,555 adding 'rsalor-1.0.9.dist-info/RECORD' 2025-01-17T00:11:50,560 removing build/bdist.linux-armv7l/wheel 2025-01-17T00:11:50,695 Building wheel for rsalor (setup.py): finished with status 'done' 2025-01-17T00:11:50,700 Created wheel for rsalor: filename=rsalor-1.0.9-cp39-cp39-linux_armv7l.whl size=225274 sha256=aa1deae9c86299d35fe658c5c6aa9835e1b928611ba04f8302b24fe3f5705eae 2025-01-17T00:11:50,701 Stored in directory: /tmp/pip-ephem-wheel-cache-0fuhey1m/wheels/79/b8/df/4761508c233fe6dc4af5d4dcfd954bccbfac1f28e435bf3bcb 2025-01-17T00:11:50,713 Successfully built rsalor 2025-01-17T00:11:50,721 Removed build tracker: '/tmp/pip-build-tracker-bd596yr9'