2025-01-17T04:32:29,007 Created temporary directory: /tmp/pip-build-tracker-a90lu8nr 2025-01-17T04:32:29,008 Initialized build tracking at /tmp/pip-build-tracker-a90lu8nr 2025-01-17T04:32:29,009 Created build tracker: /tmp/pip-build-tracker-a90lu8nr 2025-01-17T04:32:29,009 Entered build tracker: /tmp/pip-build-tracker-a90lu8nr 2025-01-17T04:32:29,010 Created temporary directory: /tmp/pip-wheel-15hvzqo7 2025-01-17T04:32:29,014 Created temporary directory: /tmp/pip-ephem-wheel-cache-s7ml42zv 2025-01-17T04:32:29,062 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-17T04:32:29,065 2 location(s) to search for versions of thnet: 2025-01-17T04:32:29,065 * https://pypi.org/simple/thnet/ 2025-01-17T04:32:29,065 * https://www.piwheels.org/simple/thnet/ 2025-01-17T04:32:29,066 Fetching project page and analyzing links: https://pypi.org/simple/thnet/ 2025-01-17T04:32:29,066 Getting page https://pypi.org/simple/thnet/ 2025-01-17T04:32:29,068 Found index url https://pypi.org/simple/ 2025-01-17T04:32:29,285 Fetched page https://pypi.org/simple/thnet/ as application/vnd.pypi.simple.v1+json 2025-01-17T04:32:29,288 Skipping link: No binaries permitted for thnet: https://files.pythonhosted.org/packages/d5/6e/ac7725780afdcb9910478be04f22906e639efce0570d65eca8c378c20dda/THNet-1.0.1-py3-none-any.whl (from https://pypi.org/simple/thnet/) 2025-01-17T04:32:29,288 Found link https://files.pythonhosted.org/packages/e1/66/f03b75f161e172894b76c113b8d3fde4c96f78f260248f837cb6e4e843ee/thnet-1.0.1.tar.gz (from https://pypi.org/simple/thnet/), version: 1.0.1 2025-01-17T04:32:29,289 Skipping link: No binaries permitted for thnet: https://files.pythonhosted.org/packages/e5/b1/3a784b49d12db546d28d7973d23b4401034c5df05e1238a1fdb9e10e7675/THNet-1.0.2-py3-none-any.whl (from https://pypi.org/simple/thnet/) 2025-01-17T04:32:29,290 Found link https://files.pythonhosted.org/packages/f4/07/5a860996cd91dfc80326bf7cbc2651c9b0b3ae0d15f04ce02674b3820a58/thnet-1.0.2.tar.gz (from https://pypi.org/simple/thnet/), version: 1.0.2 2025-01-17T04:32:29,290 Skipping link: No binaries permitted for thnet: https://files.pythonhosted.org/packages/16/13/07f990b36cbfd46c595a8d4c7005305ef06f6ad9c12d41b16ffbfb23ecdb/THNet-1.0.3-py3-none-any.whl (from https://pypi.org/simple/thnet/) 2025-01-17T04:32:29,291 Found link https://files.pythonhosted.org/packages/1f/c2/8116f1337fbd5684bfb7fa5dc32400b998267fb747348717b0bdd46edc1d/THNet-1.0.3.tar.gz (from https://pypi.org/simple/thnet/), version: 1.0.3 2025-01-17T04:32:29,292 Fetching project page and analyzing links: https://www.piwheels.org/simple/thnet/ 2025-01-17T04:32:29,293 Getting page https://www.piwheels.org/simple/thnet/ 2025-01-17T04:32:29,294 Found index url https://www.piwheels.org/simple/ 2025-01-17T04:32:29,492 Fetched page https://www.piwheels.org/simple/thnet/ as text/html 2025-01-17T04:32:29,494 Skipping link: No binaries permitted for thnet: https://www.piwheels.org/simple/thnet/THNet-1.0.2-py3-none-any.whl#sha256=dcad31642679d0ae9e5709f543f65ea0fec3f4f742d504ebc5d0f02683d40ac2 (from https://www.piwheels.org/simple/thnet/) 2025-01-17T04:32:29,495 Skipping link: No binaries permitted for thnet: https://www.piwheels.org/simple/thnet/THNet-1.0.1-py3-none-any.whl#sha256=168844b745b8ad268c86ce377c9b9915e38138c89fa5a189c1f50d14e3fc0afa (from https://www.piwheels.org/simple/thnet/) 2025-01-17T04:32:29,496 Skipping link: not a file: https://www.piwheels.org/simple/thnet/ 2025-01-17T04:32:29,496 Skipping link: not a file: https://pypi.org/simple/thnet/ 2025-01-17T04:32:29,515 Given no hashes to check 1 links for project 'thnet': discarding no candidates 2025-01-17T04:32:29,517 Collecting thnet==1.0.3 2025-01-17T04:32:29,520 Created temporary directory: /tmp/pip-unpack-vwuy46q_ 2025-01-17T04:32:29,992 Downloading THNet-1.0.3.tar.gz (31.5 MB) 2025-01-17T04:32:49,169 Added thnet==1.0.3 from https://files.pythonhosted.org/packages/1f/c2/8116f1337fbd5684bfb7fa5dc32400b998267fb747348717b0bdd46edc1d/THNet-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-a90lu8nr' 2025-01-17T04:32:49,172 Running setup.py (path:/tmp/pip-wheel-15hvzqo7/thnet_23721753b60f4f22bf8e3cacbda14791/setup.py) egg_info for package thnet 2025-01-17T04:32:49,173 Created temporary directory: /tmp/pip-pip-egg-info-4rf4157r 2025-01-17T04:32:49,174 Preparing metadata (setup.py): started 2025-01-17T04:32:49,176 Running command python setup.py egg_info 2025-01-17T04:32:50,330 running egg_info 2025-01-17T04:32:50,358 creating /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info 2025-01-17T04:32:50,359 writing /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/PKG-INFO 2025-01-17T04:32:50,363 writing dependency_links to /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/dependency_links.txt 2025-01-17T04:32:50,364 writing entry points to /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/entry_points.txt 2025-01-17T04:32:50,366 writing requirements to /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/requires.txt 2025-01-17T04:32:50,367 writing top-level names to /tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/top_level.txt 2025-01-17T04:32:50,368 writing manifest file '/tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/SOURCES.txt' 2025-01-17T04:32:50,461 reading manifest file '/tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/SOURCES.txt' 2025-01-17T04:32:50,463 reading manifest template 'MANIFEST.in' 2025-01-17T04:32:50,472 adding license file 'LICENSE' 2025-01-17T04:32:50,475 writing manifest file '/tmp/pip-pip-egg-info-4rf4157r/THNet.egg-info/SOURCES.txt' 2025-01-17T04:32:50,582 Preparing metadata (setup.py): finished with status 'done' 2025-01-17T04:32:50,587 Source in /tmp/pip-wheel-15hvzqo7/thnet_23721753b60f4f22bf8e3cacbda14791 has version 1.0.3, which satisfies requirement thnet==1.0.3 from https://files.pythonhosted.org/packages/1f/c2/8116f1337fbd5684bfb7fa5dc32400b998267fb747348717b0bdd46edc1d/THNet-1.0.3.tar.gz 2025-01-17T04:32:50,588 Removed thnet==1.0.3 from https://files.pythonhosted.org/packages/1f/c2/8116f1337fbd5684bfb7fa5dc32400b998267fb747348717b0bdd46edc1d/THNet-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-a90lu8nr' 2025-01-17T04:32:50,593 Created temporary directory: /tmp/pip-unpack-i18ftah1 2025-01-17T04:32:50,594 Created temporary directory: /tmp/pip-unpack-3zg7vfip 2025-01-17T04:32:50,595 Building wheels for collected packages: thnet 2025-01-17T04:32:50,599 Created temporary directory: /tmp/pip-wheel-l97cq1u8 2025-01-17T04:32:50,600 Building wheel for thnet (setup.py): started 2025-01-17T04:32:50,601 Destination directory: /tmp/pip-wheel-l97cq1u8 2025-01-17T04:32:50,602 Running command python setup.py bdist_wheel 2025-01-17T04:32:51,873 running bdist_wheel 2025-01-17T04:32:52,007 running build 2025-01-17T04:32:52,008 running build_py 2025-01-17T04:32:52,038 creating build/lib/THNet 2025-01-17T04:32:52,040 copying THNet/__init__.py -> build/lib/THNet 2025-01-17T04:32:52,042 copying THNet/load_model.py -> build/lib/THNet 2025-01-17T04:32:52,045 creating build/lib/THNet/HLA_inference 2025-01-17T04:32:52,046 copying THNet/HLA_inference/__init__.py -> build/lib/THNet/HLA_inference 2025-01-17T04:32:52,048 copying THNet/HLA_inference/HLA_inference.py -> build/lib/THNet/HLA_inference 2025-01-17T04:32:52,051 copying THNet/HLA_inference/model_prediction.py -> build/lib/THNet/HLA_inference 2025-01-17T04:32:52,054 creating build/lib/THNet/Mismatch_score 2025-01-17T04:32:52,055 copying THNet/Mismatch_score/__init__.py -> build/lib/THNet/Mismatch_score 2025-01-17T04:32:52,057 copying THNet/Mismatch_score/calculate_MS.py -> build/lib/THNet/Mismatch_score 2025-01-17T04:32:52,059 running egg_info 2025-01-17T04:32:52,088 writing THNet.egg-info/PKG-INFO 2025-01-17T04:32:52,091 writing dependency_links to THNet.egg-info/dependency_links.txt 2025-01-17T04:32:52,093 writing entry points to THNet.egg-info/entry_points.txt 2025-01-17T04:32:52,094 writing requirements to THNet.egg-info/requires.txt 2025-01-17T04:32:52,096 writing top-level names to THNet.egg-info/top_level.txt 2025-01-17T04:32:52,130 reading manifest file 'THNet.egg-info/SOURCES.txt' 2025-01-17T04:32:52,134 reading manifest template 'MANIFEST.in' 2025-01-17T04:32:52,142 adding license file 'LICENSE' 2025-01-17T04:32:52,146 writing manifest file 'THNet.egg-info/SOURCES.txt' 2025-01-17T04:32:52,148 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'THNet.HLA_inference.example' is absent from the `packages` configuration. 2025-01-17T04:32:52,149 !! 2025-01-17T04:32:52,149 ******************************************************************************** 2025-01-17T04:32:52,150 ############################ 2025-01-17T04:32:52,150 # Package would be ignored # 2025-01-17T04:32:52,151 ############################ 2025-01-17T04:32:52,151 Python recognizes 'THNet.HLA_inference.example' as an importable package[^1], 2025-01-17T04:32:52,152 but it is absent from setuptools' `packages` configuration. 2025-01-17T04:32:52,153 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-17T04:32:52,153 package, please make sure that 'THNet.HLA_inference.example' is explicitly added 2025-01-17T04:32:52,153 to the `packages` configuration field. 2025-01-17T04:32:52,154 Alternatively, you can also rely on setuptools' discovery methods 2025-01-17T04:32:52,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-17T04:32:52,155 instead of `find_packages(...)`/`find:`). 2025-01-17T04:32:52,156 You can read more about "package discovery" on setuptools documentation page: 2025-01-17T04:32:52,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-17T04:32:52,159 If you don't want 'THNet.HLA_inference.example' to be distributed and are 2025-01-17T04:32:52,159 already explicitly excluding 'THNet.HLA_inference.example' via 2025-01-17T04:32:52,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-17T04:32:52,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-17T04:32:52,161 combination with a more fine grained `package-data` configuration. 2025-01-17T04:32:52,162 You can read more about "package data files" on setuptools documentation page: 2025-01-17T04:32:52,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-17T04:32:52,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-17T04:32:52,165 even if it does not contain any `.py` files. 2025-01-17T04:32:52,166 On the other hand, currently there is no concept of package data 2025-01-17T04:32:52,166 directory, all directories are treated like packages. 2025-01-17T04:32:52,167 ******************************************************************************** 2025-01-17T04:32:52,168 !! 2025-01-17T04:32:52,169 check.warn(importable) 2025-01-17T04:32:52,169 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'THNet.HLA_inference.models' is absent from the `packages` configuration. 2025-01-17T04:32:52,170 !! 2025-01-17T04:32:52,171 ******************************************************************************** 2025-01-17T04:32:52,172 ############################ 2025-01-17T04:32:52,172 # Package would be ignored # 2025-01-17T04:32:52,173 ############################ 2025-01-17T04:32:52,173 Python recognizes 'THNet.HLA_inference.models' as an importable package[^1], 2025-01-17T04:32:52,174 but it is absent from setuptools' `packages` configuration. 2025-01-17T04:32:52,175 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-17T04:32:52,176 package, please make sure that 'THNet.HLA_inference.models' is explicitly added 2025-01-17T04:32:52,176 to the `packages` configuration field. 2025-01-17T04:32:52,178 Alternatively, you can also rely on setuptools' discovery methods 2025-01-17T04:32:52,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-17T04:32:52,179 instead of `find_packages(...)`/`find:`). 2025-01-17T04:32:52,180 You can read more about "package discovery" on setuptools documentation page: 2025-01-17T04:32:52,181 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-17T04:32:52,182 If you don't want 'THNet.HLA_inference.models' to be distributed and are 2025-01-17T04:32:52,183 already explicitly excluding 'THNet.HLA_inference.models' via 2025-01-17T04:32:52,183 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-17T04:32:52,184 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-17T04:32:52,184 combination with a more fine grained `package-data` configuration. 2025-01-17T04:32:52,185 You can read more about "package data files" on setuptools documentation page: 2025-01-17T04:32:52,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-17T04:32:52,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-17T04:32:52,188 even if it does not contain any `.py` files. 2025-01-17T04:32:52,188 On the other hand, currently there is no concept of package data 2025-01-17T04:32:52,189 directory, all directories are treated like packages. 2025-01-17T04:32:52,190 ******************************************************************************** 2025-01-17T04:32:52,190 !! 2025-01-17T04:32:52,191 check.warn(importable) 2025-01-17T04:32:52,192 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'THNet.HLA_inference.parameter' is absent from the `packages` configuration. 2025-01-17T04:32:52,192 !! 2025-01-17T04:32:52,193 ******************************************************************************** 2025-01-17T04:32:52,194 ############################ 2025-01-17T04:32:52,195 # Package would be ignored # 2025-01-17T04:32:52,196 ############################ 2025-01-17T04:32:52,198 Python recognizes 'THNet.HLA_inference.parameter' as an importable package[^1], 2025-01-17T04:32:52,200 but it is absent from setuptools' `packages` configuration. 2025-01-17T04:32:52,203 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-17T04:32:52,204 package, please make sure that 'THNet.HLA_inference.parameter' is explicitly added 2025-01-17T04:32:52,207 to the `packages` configuration field. 2025-01-17T04:32:52,209 Alternatively, you can also rely on setuptools' discovery methods 2025-01-17T04:32:52,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-17T04:32:52,210 instead of `find_packages(...)`/`find:`). 2025-01-17T04:32:52,211 You can read more about "package discovery" on setuptools documentation page: 2025-01-17T04:32:52,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-17T04:32:52,214 If you don't want 'THNet.HLA_inference.parameter' to be distributed and are 2025-01-17T04:32:52,215 already explicitly excluding 'THNet.HLA_inference.parameter' via 2025-01-17T04:32:52,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-17T04:32:52,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-17T04:32:52,216 combination with a more fine grained `package-data` configuration. 2025-01-17T04:32:52,218 You can read more about "package data files" on setuptools documentation page: 2025-01-17T04:32:52,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-17T04:32:52,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-17T04:32:52,230 even if it does not contain any `.py` files. 2025-01-17T04:32:52,232 On the other hand, currently there is no concept of package data 2025-01-17T04:32:52,232 directory, all directories are treated like packages. 2025-01-17T04:32:52,233 ******************************************************************************** 2025-01-17T04:32:52,235 !! 2025-01-17T04:32:52,236 check.warn(importable) 2025-01-17T04:32:52,236 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'THNet.Mismatch_score.example' is absent from the `packages` configuration. 2025-01-17T04:32:52,238 !! 2025-01-17T04:32:52,239 ******************************************************************************** 2025-01-17T04:32:52,240 ############################ 2025-01-17T04:32:52,240 # Package would be ignored # 2025-01-17T04:32:52,242 ############################ 2025-01-17T04:32:52,242 Python recognizes 'THNet.Mismatch_score.example' as an importable package[^1], 2025-01-17T04:32:52,243 but it is absent from setuptools' `packages` configuration. 2025-01-17T04:32:52,244 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-17T04:32:52,245 package, please make sure that 'THNet.Mismatch_score.example' is explicitly added 2025-01-17T04:32:52,246 to the `packages` configuration field. 2025-01-17T04:32:52,247 Alternatively, you can also rely on setuptools' discovery methods 2025-01-17T04:32:52,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-17T04:32:52,249 instead of `find_packages(...)`/`find:`). 2025-01-17T04:32:52,251 You can read more about "package discovery" on setuptools documentation page: 2025-01-17T04:32:52,252 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-17T04:32:52,254 If you don't want 'THNet.Mismatch_score.example' to be distributed and are 2025-01-17T04:32:52,255 already explicitly excluding 'THNet.Mismatch_score.example' via 2025-01-17T04:32:52,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-17T04:32:52,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-17T04:32:52,258 combination with a more fine grained `package-data` configuration. 2025-01-17T04:32:52,261 You can read more about "package data files" on setuptools documentation page: 2025-01-17T04:32:52,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-17T04:32:52,268 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-17T04:32:52,268 even if it does not contain any `.py` files. 2025-01-17T04:32:52,269 On the other hand, currently there is no concept of package data 2025-01-17T04:32:52,271 directory, all directories are treated like packages. 2025-01-17T04:32:52,276 ******************************************************************************** 2025-01-17T04:32:52,280 !! 2025-01-17T04:32:52,281 check.warn(importable) 2025-01-17T04:32:52,283 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'THNet.Mismatch_score.parameter' is absent from the `packages` configuration. 2025-01-17T04:32:52,283 !! 2025-01-17T04:32:52,285 ******************************************************************************** 2025-01-17T04:32:52,286 ############################ 2025-01-17T04:32:52,286 # Package would be ignored # 2025-01-17T04:32:52,287 ############################ 2025-01-17T04:32:52,287 Python recognizes 'THNet.Mismatch_score.parameter' as an importable package[^1], 2025-01-17T04:32:52,288 but it is absent from setuptools' `packages` configuration. 2025-01-17T04:32:52,290 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-17T04:32:52,291 package, please make sure that 'THNet.Mismatch_score.parameter' is explicitly added 2025-01-17T04:32:52,291 to the `packages` configuration field. 2025-01-17T04:32:52,292 Alternatively, you can also rely on setuptools' discovery methods 2025-01-17T04:32:52,292 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-17T04:32:52,293 instead of `find_packages(...)`/`find:`). 2025-01-17T04:32:52,294 You can read more about "package discovery" on setuptools documentation page: 2025-01-17T04:32:52,295 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-17T04:32:52,296 If you don't want 'THNet.Mismatch_score.parameter' to be distributed and are 2025-01-17T04:32:52,297 already explicitly excluding 'THNet.Mismatch_score.parameter' via 2025-01-17T04:32:52,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-17T04:32:52,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-17T04:32:52,298 combination with a more fine grained `package-data` configuration. 2025-01-17T04:32:52,299 You can read more about "package data files" on setuptools documentation page: 2025-01-17T04:32:52,300 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-17T04:32:52,302 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-17T04:32:52,303 even if it does not contain any `.py` files. 2025-01-17T04:32:52,303 On the other hand, currently there is no concept of package data 2025-01-17T04:32:52,304 directory, all directories are treated like packages. 2025-01-17T04:32:52,304 ******************************************************************************** 2025-01-17T04:32:52,306 !! 2025-01-17T04:32:52,306 check.warn(importable) 2025-01-17T04:32:52,307 creating build/lib/THNet/HLA_inference/example 2025-01-17T04:32:52,307 copying THNet/HLA_inference/example/input_example.csv -> build/lib/THNet/HLA_inference/example 2025-01-17T04:32:52,308 creating build/lib/THNet/HLA_inference/models 2025-01-17T04:32:52,308 copying THNet/HLA_inference/models/models_2.pkl -> build/lib/THNet/HLA_inference/models 2025-01-17T04:32:56,194 copying THNet/HLA_inference/models/models_1.pkl -> build/lib/THNet/HLA_inference/models 2025-01-17T04:33:03,260 creating build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,262 copying THNet/HLA_inference/parameter/hla_list.pkl -> build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,265 copying THNet/HLA_inference/parameter/v_gene_list.pkl -> build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,268 copying THNet/HLA_inference/parameter/fscore_dict.pkl -> build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,272 copying THNet/HLA_inference/parameter/hla_auc.pkl -> build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,275 copying THNet/HLA_inference/parameter/hla_threshold_dict.pkl -> build/lib/THNet/HLA_inference/parameter 2025-01-17T04:33:03,281 creating build/lib/THNet/Mismatch_score/example 2025-01-17T04:33:03,283 copying THNet/Mismatch_score/example/input_example.csv -> build/lib/THNet/Mismatch_score/example 2025-01-17T04:33:03,286 creating build/lib/THNet/Mismatch_score/parameter 2025-01-17T04:33:03,287 copying THNet/Mismatch_score/parameter/hla_list.pkl -> build/lib/THNet/Mismatch_score/parameter 2025-01-17T04:33:03,290 copying THNet/Mismatch_score/parameter/class2_distance.pkl -> build/lib/THNet/Mismatch_score/parameter 2025-01-17T04:33:03,342 copying THNet/Mismatch_score/parameter/class1_distance.pkl -> build/lib/THNet/Mismatch_score/parameter 2025-01-17T04:33:03,390 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-17T04:33:03,390 !! 2025-01-17T04:33:03,391 ******************************************************************************** 2025-01-17T04:33:03,392 Please avoid running ``setup.py`` directly. 2025-01-17T04:33:03,392 Instead, use pypa/build, pypa/installer or other 2025-01-17T04:33:03,393 standards-based tools. 2025-01-17T04:33:03,394 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-17T04:33:03,394 ******************************************************************************** 2025-01-17T04:33:03,395 !! 2025-01-17T04:33:03,396 self.initialize_options() 2025-01-17T04:33:03,425 installing to build/bdist.linux-armv7l/wheel 2025-01-17T04:33:03,425 running install 2025-01-17T04:33:03,451 running install_lib 2025-01-17T04:33:03,480 creating build/bdist.linux-armv7l/wheel 2025-01-17T04:33:03,483 creating build/bdist.linux-armv7l/wheel/THNet 2025-01-17T04:33:03,484 copying build/lib/THNet/__init__.py -> build/bdist.linux-armv7l/wheel/./THNet 2025-01-17T04:33:03,486 copying build/lib/THNet/load_model.py -> build/bdist.linux-armv7l/wheel/./THNet 2025-01-17T04:33:03,490 creating build/bdist.linux-armv7l/wheel/THNet/HLA_inference 2025-01-17T04:33:03,491 creating build/bdist.linux-armv7l/wheel/THNet/HLA_inference/example 2025-01-17T04:33:03,493 copying build/lib/THNet/HLA_inference/example/input_example.csv -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/example 2025-01-17T04:33:03,495 copying build/lib/THNet/HLA_inference/__init__.py -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference 2025-01-17T04:33:03,496 copying build/lib/THNet/HLA_inference/HLA_inference.py -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference 2025-01-17T04:33:03,499 creating build/bdist.linux-armv7l/wheel/THNet/HLA_inference/parameter 2025-01-17T04:33:03,501 copying build/lib/THNet/HLA_inference/parameter/hla_list.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/parameter 2025-01-17T04:33:03,503 copying build/lib/THNet/HLA_inference/parameter/v_gene_list.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/parameter 2025-01-17T04:33:03,504 copying build/lib/THNet/HLA_inference/parameter/fscore_dict.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/parameter 2025-01-17T04:33:03,507 copying build/lib/THNet/HLA_inference/parameter/hla_auc.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/parameter 2025-01-17T04:33:03,509 copying build/lib/THNet/HLA_inference/parameter/hla_threshold_dict.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/parameter 2025-01-17T04:33:03,512 copying build/lib/THNet/HLA_inference/model_prediction.py -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference 2025-01-17T04:33:03,514 creating build/bdist.linux-armv7l/wheel/THNet/HLA_inference/models 2025-01-17T04:33:03,515 copying build/lib/THNet/HLA_inference/models/models_2.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/models 2025-01-17T04:33:05,870 copying build/lib/THNet/HLA_inference/models/models_1.pkl -> build/bdist.linux-armv7l/wheel/./THNet/HLA_inference/models 2025-01-17T04:33:09,361 creating build/bdist.linux-armv7l/wheel/THNet/Mismatch_score 2025-01-17T04:33:09,364 creating build/bdist.linux-armv7l/wheel/THNet/Mismatch_score/example 2025-01-17T04:33:09,365 copying build/lib/THNet/Mismatch_score/example/input_example.csv -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score/example 2025-01-17T04:33:09,369 copying build/lib/THNet/Mismatch_score/__init__.py -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score 2025-01-17T04:33:09,373 creating build/bdist.linux-armv7l/wheel/THNet/Mismatch_score/parameter 2025-01-17T04:33:09,374 copying build/lib/THNet/Mismatch_score/parameter/hla_list.pkl -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score/parameter 2025-01-17T04:33:09,378 copying build/lib/THNet/Mismatch_score/parameter/class2_distance.pkl -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score/parameter 2025-01-17T04:33:09,391 copying build/lib/THNet/Mismatch_score/parameter/class1_distance.pkl -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score/parameter 2025-01-17T04:33:09,403 copying build/lib/THNet/Mismatch_score/calculate_MS.py -> build/bdist.linux-armv7l/wheel/./THNet/Mismatch_score 2025-01-17T04:33:09,406 running install_egg_info 2025-01-17T04:33:09,443 Copying THNet.egg-info to build/bdist.linux-armv7l/wheel/./THNet-1.0.3-py3.11.egg-info 2025-01-17T04:33:09,464 running install_scripts 2025-01-17T04:33:09,486 creating build/bdist.linux-armv7l/wheel/THNet-1.0.3.dist-info/WHEEL 2025-01-17T04:33:09,489 creating '/tmp/pip-wheel-l97cq1u8/THNet-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-17T04:33:09,492 adding 'THNet/__init__.py' 2025-01-17T04:33:09,493 adding 'THNet/load_model.py' 2025-01-17T04:33:09,496 adding 'THNet/HLA_inference/HLA_inference.py' 2025-01-17T04:33:09,497 adding 'THNet/HLA_inference/__init__.py' 2025-01-17T04:33:09,498 adding 'THNet/HLA_inference/model_prediction.py' 2025-01-17T04:33:09,500 adding 'THNet/HLA_inference/example/input_example.csv' 2025-01-17T04:33:21,279 adding 'THNet/HLA_inference/models/models_1.pkl' 2025-01-17T04:33:34,590 adding 'THNet/HLA_inference/models/models_2.pkl' 2025-01-17T04:33:35,147 adding 'THNet/HLA_inference/parameter/fscore_dict.pkl' 2025-01-17T04:33:35,149 adding 'THNet/HLA_inference/parameter/hla_auc.pkl' 2025-01-17T04:33:35,151 adding 'THNet/HLA_inference/parameter/hla_list.pkl' 2025-01-17T04:33:35,154 adding 'THNet/HLA_inference/parameter/hla_threshold_dict.pkl' 2025-01-17T04:33:35,155 adding 'THNet/HLA_inference/parameter/v_gene_list.pkl' 2025-01-17T04:33:35,157 adding 'THNet/Mismatch_score/__init__.py' 2025-01-17T04:33:35,159 adding 'THNet/Mismatch_score/calculate_MS.py' 2025-01-17T04:33:35,162 adding 'THNet/Mismatch_score/example/input_example.csv' 2025-01-17T04:33:35,201 adding 'THNet/Mismatch_score/parameter/class1_distance.pkl' 2025-01-17T04:33:35,238 adding 'THNet/Mismatch_score/parameter/class2_distance.pkl' 2025-01-17T04:33:35,242 adding 'THNet/Mismatch_score/parameter/hla_list.pkl' 2025-01-17T04:33:35,245 adding 'THNet-1.0.3.dist-info/LICENSE' 2025-01-17T04:33:35,247 adding 'THNet-1.0.3.dist-info/METADATA' 2025-01-17T04:33:35,248 adding 'THNet-1.0.3.dist-info/WHEEL' 2025-01-17T04:33:35,253 adding 'THNet-1.0.3.dist-info/entry_points.txt' 2025-01-17T04:33:35,254 adding 'THNet-1.0.3.dist-info/top_level.txt' 2025-01-17T04:33:35,255 adding 'THNet-1.0.3.dist-info/RECORD' 2025-01-17T04:33:38,858 removing build/bdist.linux-armv7l/wheel 2025-01-17T04:33:39,072 Building wheel for thnet (setup.py): finished with status 'done' 2025-01-17T04:33:39,395 Created wheel for thnet: filename=THNet-1.0.3-py3-none-any.whl size=32500368 sha256=1a0ee6ca0a4b9664e3b47baf90f9df30836d0d552add9a9b394e195b5eeb9ea9 2025-01-17T04:33:39,396 Stored in directory: /tmp/pip-ephem-wheel-cache-s7ml42zv/wheels/43/c5/21/8c80db75134f47bcb838f18ea42b7668673ab9f0ca6870f12d 2025-01-17T04:33:39,418 Successfully built thnet 2025-01-17T04:33:40,239 Removed build tracker: '/tmp/pip-build-tracker-a90lu8nr'