2025-01-27T18:03:08,039 Created temporary directory: /tmp/pip-build-tracker-ew8jqd8u 2025-01-27T18:03:08,041 Initialized build tracking at /tmp/pip-build-tracker-ew8jqd8u 2025-01-27T18:03:08,041 Created build tracker: /tmp/pip-build-tracker-ew8jqd8u 2025-01-27T18:03:08,042 Entered build tracker: /tmp/pip-build-tracker-ew8jqd8u 2025-01-27T18:03:08,043 Created temporary directory: /tmp/pip-wheel-y3x47kwf 2025-01-27T18:03:08,047 Created temporary directory: /tmp/pip-ephem-wheel-cache-7qbzv15x 2025-01-27T18:03:08,092 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-27T18:03:08,095 2 location(s) to search for versions of dnachisel: 2025-01-27T18:03:08,095 * https://pypi.org/simple/dnachisel/ 2025-01-27T18:03:08,095 * https://www.piwheels.org/simple/dnachisel/ 2025-01-27T18:03:08,096 Fetching project page and analyzing links: https://pypi.org/simple/dnachisel/ 2025-01-27T18:03:08,096 Getting page https://pypi.org/simple/dnachisel/ 2025-01-27T18:03:08,098 Found index url https://pypi.org/simple/ 2025-01-27T18:03:08,317 Fetched page https://pypi.org/simple/dnachisel/ as application/vnd.pypi.simple.v1+json 2025-01-27T18:03:08,328 Found link https://files.pythonhosted.org/packages/05/47/a96748f3a5b7244f0831e226d5e41739a4d5e9ce407bbc8a2780a75aaff9/dnachisel-0.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.0 2025-01-27T18:03:08,328 Found link https://files.pythonhosted.org/packages/f1/47/a7e5698b69ef6ccff6f92c2114b5d4274fafd847309180e643a0463c71ad/dnachisel-0.1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.1 2025-01-27T18:03:08,329 Found link https://files.pythonhosted.org/packages/44/f2/2ca105de7874b06905dca1ce5889c8523a2c76bc940383cd41ea5e63384a/dnachisel-0.1.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.2 2025-01-27T18:03:08,330 Found link https://files.pythonhosted.org/packages/a2/41/df1ebdb209906aa5339e4e07844efd206cdeb535ed3d158d247ee183346b/dnachisel-0.1.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.3 2025-01-27T18:03:08,330 Found link https://files.pythonhosted.org/packages/05/8d/6fa334dd787e19a6c059b8b40435c0a92041ecdd350f4d3a3729a0b15380/dnachisel-0.1.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.4 2025-01-27T18:03:08,331 Found link https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.5 2025-01-27T18:03:08,332 Found link https://files.pythonhosted.org/packages/31/58/e3c107bbfceb08be5b2e7d67c24a4cb779e59300e0591a795ddc53e8eeab/dnachisel-0.1.6.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.6 2025-01-27T18:03:08,332 Found link https://files.pythonhosted.org/packages/a3/23/47c02344131eaeb270e89ca4e38226a0dc7e1b0c156a8b6d92c4a1645c5a/dnachisel-0.1.7.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.7 2025-01-27T18:03:08,333 Found link https://files.pythonhosted.org/packages/92/7c/7d2bc5e0742106a515fe2355493b8c923c8f47dd7c5de84592c9337cbd89/dnachisel-0.1.8.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.8 2025-01-27T18:03:08,334 Found link https://files.pythonhosted.org/packages/c0/c1/7970faf4a8eec61766eb311ee586a70fe838f9e4c58ab812b83276d61f0c/dnachisel-0.1.9.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.9 2025-01-27T18:03:08,334 Found link https://files.pythonhosted.org/packages/a0/0b/85ee2c0625a40c535e6a33413d5f523edb5c6546917929ba2e7c03828ab6/dnachisel-0.2.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.2.0 2025-01-27T18:03:08,335 Found link https://files.pythonhosted.org/packages/c0/29/db1c95f8e340101f9332b267e2995935f2f62bb5ff11393180ffd096549e/dnachisel-0.3.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.3.0 2025-01-27T18:03:08,336 Found link https://files.pythonhosted.org/packages/a5/36/fdfbf8e7b94c4bac0c1accae5fc84acac47f3cce59fee55e2d67e2b3a8d0/dnachisel-0.3.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.3.1 2025-01-27T18:03:08,336 Found link https://files.pythonhosted.org/packages/29/2c/05743f061b8604c700ced74c2c036f2e02d5bcc179f96670739019d539fb/dnachisel-1.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.0 2025-01-27T18:03:08,337 Found link https://files.pythonhosted.org/packages/6b/0b/bba0d5cebcba782549cf8b551b97e57b9e9ec0724b010321133f05fc48fe/dnachisel-1.0.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.1 2025-01-27T18:03:08,338 Found link https://files.pythonhosted.org/packages/49/d5/8531e5002b8953c1f00bd3ca8160c61860d1e5694af793ac9db1932d530c/dnachisel-1.0.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.2 2025-01-27T18:03:08,339 Found link https://files.pythonhosted.org/packages/1a/9f/e3a23a2eb761313cbedf0a6eb5eb4839dcd097a2e0f048caf00a0960a875/dnachisel-1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.1 2025-01-27T18:03:08,339 Found link https://files.pythonhosted.org/packages/28/3a/90c1c8c66ac4d1855e68d84f5ac4b02725b66269fa1e5f3ad659e8aee5ce/dnachisel-1.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.2 2025-01-27T18:03:08,340 Found link https://files.pythonhosted.org/packages/17/72/010b47cc62d2106d185010311b30fd8befd2da3b63d824f1f2a14f0acece/dnachisel-1.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.3 2025-01-27T18:03:08,340 Found link https://files.pythonhosted.org/packages/17/a4/2d692becb5bb3b9e8cae803bde47b606c26e58b86149c52d13c320150a92/dnachisel-1.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.4 2025-01-27T18:03:08,341 Found link https://files.pythonhosted.org/packages/81/f0/c45e6358561f83b95cd1910cb4fdd4158238abed56cc6ece1013b7b88eee/dnachisel-1.4.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.4.1 2025-01-27T18:03:08,341 Found link https://files.pythonhosted.org/packages/66/d8/866a7025c8125864ec06e29d23be478f50a38470fa30ef189b5b9445f12e/dnachisel-2.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 2.0.0 2025-01-27T18:03:08,342 Found link https://files.pythonhosted.org/packages/79/c2/8d534725f459a631034e367ae792ea8eecfb6a6a9ce5f24aab857a10244b/dnachisel-2.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 2.1.0 2025-01-27T18:03:08,343 Found link https://files.pythonhosted.org/packages/17/0e/0477c7314cf9101442887d397f3d8667e512302f76462108e69781f42800/dnachisel-3.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.0 2025-01-27T18:03:08,343 Found link https://files.pythonhosted.org/packages/b8/c5/f12a80ad9344e5bb51374da19ad03b8ee641ebb9c7c0fc2aefc6483fcf1d/dnachisel-3.0.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.1 2025-01-27T18:03:08,344 Found link https://files.pythonhosted.org/packages/79/61/8eaefa82fef964ae1e0a885eb3bf12d848d3da6c4f74435956669c2beb28/dnachisel-3.0.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.2 2025-01-27T18:03:08,344 Found link https://files.pythonhosted.org/packages/5e/16/d74e12592595d79c467989a69440fdf95e6017a1c8bcdc842cec3dd114c9/dnachisel-3.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.1.0 2025-01-27T18:03:08,345 Found link https://files.pythonhosted.org/packages/60/f1/e44f58e59a4f14e278c3a90e7f033a3b440c3c548695416d3a01bcb77042/dnachisel-3.1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.1.1 2025-01-27T18:03:08,346 Found link https://files.pythonhosted.org/packages/3b/87/edda73242893e94824c14d59156de99f108fc4972a559fc94787cdef67d3/dnachisel-3.2.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.0 2025-01-27T18:03:08,346 Found link https://files.pythonhosted.org/packages/e1/be/1b20535a252ad97c3531cc94a0cbcecfe9d3980c67eadbea9cd3684781da/dnachisel-3.2.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.1 2025-01-27T18:03:08,347 Found link https://files.pythonhosted.org/packages/7d/b0/880e8b3ba71010a4feb8337b0dda950566615c5dff31993ef5ea6ad4a6a5/dnachisel-3.2.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.2 2025-01-27T18:03:08,348 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/0d/7a/ce563be340e997fa75d47fb9fe2f170fdb55bc326c42def8072c3e3740fe/dnachisel-3.2.3-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,348 Found link https://files.pythonhosted.org/packages/e7/4d/b56bcf7e8806d602ce9da6ca6f824ac8ddfff9156ddf8fd4a10d9a29ea85/dnachisel-3.2.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.3 2025-01-27T18:03:08,349 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/6d/29/5a6823ddb0180141c4c571c0c7e5133d9b3804732a7fd30c3d15560a6b9b/dnachisel-3.2.4-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,350 Found link https://files.pythonhosted.org/packages/a4/1e/ce2cc8eb3dfa9bb8d1fffbaa933adbeabaa11808aabd7389ffa08db33800/dnachisel-3.2.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.4 2025-01-27T18:03:08,350 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/46/87/070dbf7eb04b07d1e23edf8cfcf8478db09824238a2950ca68856f09094d/dnachisel-3.2.5-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,351 Found link https://files.pythonhosted.org/packages/fa/4a/9a55f2b32a3038cf81ea2c5b3aa17ba052dea00075aeb99e1420ce984601/dnachisel-3.2.5.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.5 2025-01-27T18:03:08,351 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/c4/92/2a245b4af17d89ff891c2430c214e00fa3ba2855bdcc938539d0c5155ca1/dnachisel-3.2.6-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,352 Found link https://files.pythonhosted.org/packages/8b/46/1489037a75121c9256d07e2abb86c07f675e94e93622e3fdedaba88d36be/dnachisel-3.2.6.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.6 2025-01-27T18:03:08,353 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/a5/87/7bbeab309a8efe4833233996cff2a3aec7d4071105d79ff59ffaac9ee185/dnachisel-3.2.7-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,353 Found link https://files.pythonhosted.org/packages/db/9d/4773a4d8d541dd21122b38e59b29f00e516d78ab6142650eea958fefa3cb/dnachisel-3.2.7.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.7 2025-01-27T18:03:08,354 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/b9/ee/ccee1dbdbc01a1e7a5bd8cf26edffc072d1cf13e72bb9c1eb27fee9c9e55/dnachisel-3.2.8-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,354 Found link https://files.pythonhosted.org/packages/5d/08/02698f76702a937a04bc26662829d0a78bbb3320dae7421bc08e91876070/dnachisel-3.2.8.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.8 2025-01-27T18:03:08,355 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/2d/03/bf2942149e149ad2e7349f118f0210b8cfcc5b2764383821934596a8bb2d/dnachisel-3.2.9-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,356 Found link https://files.pythonhosted.org/packages/f9/a6/e022b5b6c59458d86981762e8ce68847138feb47453d4055aa66ed511e62/dnachisel-3.2.9.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.9 2025-01-27T18:03:08,356 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/27/dd/90dbf7e354ed6705b3b3331cbeb9df08e150c7758a2dd91b2ad42e154e04/dnachisel-3.2.10-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,357 Found link https://files.pythonhosted.org/packages/a4/3d/e98af78449b72f3896c299afe87ae32fa01bdfe58eb1b48f7e5e22641cd8/dnachisel-3.2.10.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.10 2025-01-27T18:03:08,357 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/8c/bf/1de724d9325a3bc16ef71d34edd8fe325dac36ba575f3129c9185fe87944/dnachisel-3.2.11-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,358 Found link https://files.pythonhosted.org/packages/bc/0e/15e8406067f03d098d3d6ebec4ee0e8011e1cef12f0f83ee3f5e6b94a10f/dnachisel-3.2.11.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.11 2025-01-27T18:03:08,359 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/f1/a3/898fced54ac380481e183464b97ed2374a601c13f23415ceceab27798b02/dnachisel-3.2.12-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,359 Found link https://files.pythonhosted.org/packages/fa/8c/dc6dab35ddb6962aaa2c584e74dd3c74308b5460e2d94577f64d16bf4e5c/dnachisel-3.2.12.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.12 2025-01-27T18:03:08,360 Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/49/0f/34ed384106826847017893d579e979598f099d2973236c0d0994f6d08592/dnachisel-3.2.13-py3-none-any.whl (from https://pypi.org/simple/dnachisel/) 2025-01-27T18:03:08,360 Found link https://files.pythonhosted.org/packages/1f/eb/bbed9f7b0c5c9c492c195ad88e381f854138822b8f8a8bd495917cd95c2e/dnachisel-3.2.13.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.13 2025-01-27T18:03:08,361 Fetching project page and analyzing links: https://www.piwheels.org/simple/dnachisel/ 2025-01-27T18:03:08,362 Getting page https://www.piwheels.org/simple/dnachisel/ 2025-01-27T18:03:08,363 Found index url https://www.piwheels.org/simple/ 2025-01-27T18:03:08,521 Fetched page https://www.piwheels.org/simple/dnachisel/ as text/html 2025-01-27T18:03:08,532 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.12-py3-none-any.whl#sha256=caaf175b05d1027048ca1de195928e8cf4b3b9cc66d2858bdfe33e2fc2e03d18 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,533 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.11-py3-none-any.whl#sha256=84d6eaf40839fdc892f2575def704997d95c79626bdca219354f148eedd16349 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,533 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.10-py3-none-any.whl#sha256=48785e658a8ffeed555aeffd1771b585ce4f1bd403662d7895d4407f53aafbe0 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,534 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.9-py3-none-any.whl#sha256=608996ab2fd62fef0b648c5523a5eea47273abe30d09688e6c4cdbd04d860f31 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,535 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.8-py3-none-any.whl#sha256=be8a0c387bfba35e26223cda152136231025d08810fdbf2bba7d683af5363979 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,535 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.7-py3-none-any.whl#sha256=77baada49735e3b5e5042efc6ea5c4d92d135a531da3bebd93bb04a03cc7f106 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,536 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.6-py3-none-any.whl#sha256=f18cf0c0b1b9adc2ec228c4e894843c747b9d97937411834493ce7b8c1cd34cb (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,536 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.5-py3-none-any.whl#sha256=2e38275cc6d0113173701ec1001857c4f9006add1f0bf9aff404cf133a9c1133 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,537 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.4-py3-none-any.whl#sha256=ec718b6a514247a24193c8de61048a559f1cbfb53b9b44ceec7e4d999acc9319 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,538 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.3-py3-none-any.whl#sha256=b39ee450b925f8e2ac55e068ec919edcf504327a0613b1ecee20322402d733ab (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,538 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.2-py3-none-any.whl#sha256=8fd88781f8fff12dc05d66877be8511dc22381ddf81e8a6af24a38f0ca908f37 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,539 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.1-py3-none-any.whl#sha256=1f518024417d4e07faf2a3f0df86e3366ae03ebbd8823372499c0f6d2b8b2e14 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,539 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.0-py3-none-any.whl#sha256=b6144427379259a2222c0a86028fc91d14b3fc285c5b806c108a9c18845bf819 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,540 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.1.1-py3-none-any.whl#sha256=a4b2536ca2b5aa02a8ccdb112931fafdd1e4391c9f63d68f3d143de028aa4010 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,540 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.1.0-py3-none-any.whl#sha256=7904678c4af6b20044f26a7f509ab5bad72821d68bffe334210da1a8eb48bc4a (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,541 Skipping link: No binaries permitted for dnachisel: 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https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,543 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-2.0.0-py3-none-any.whl#sha256=2799a51695798ea563046dbb171683cb942ac8136e6d42fef88191e4832a0bda (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,543 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.4.1-py3-none-any.whl#sha256=da9da56d406bfa067d8faf02c38406140050aa5e5ba0760d684ffe43988d8844 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,544 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.4-py3-none-any.whl#sha256=e17788db7e9fcec27084fa66681c503f24bbc23f904a457c3af6d9f1bec2ea61 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,544 Skipping link: No binaries permitted for dnachisel: 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https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,547 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.0.1-py3-none-any.whl#sha256=a3fb3d33601eee16a9af6a4cad5a01e1a947229c9a48ca93b055474e7b56dc91 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,547 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.0.0-py3-none-any.whl#sha256=1ca314d414de531fd373ffbca511fe3aa4889f30a729d3d168bab6a4c70183cf (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,548 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.3.1-py3-none-any.whl#sha256=a598a837493f10bb61e934e4757d36025d1b5b5bb9348edff7bb57d01bf5f24f (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,548 Skipping link: No binaries permitted for dnachisel: 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https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,550 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.7-py3-none-any.whl#sha256=4242ba02650e57c774cabd2c1ba0284ee469461b6d2b45cb24d3a51aad5c3c36 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,551 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.6-py3-none-any.whl#sha256=4db6eabde316f2e2b9a710dc3807746a3b3beee41ae631551fc7ab409642f474 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,551 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.5-py3-none-any.whl#sha256=4998f5fcda658998de4c92777a8cac4e65e5114705110bf4d8f1086cdc8f9508 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,552 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.4-py3-none-any.whl#sha256=968fdec0d44d4ea5204340f5772c024b8e0b01b71703ac1207d2a2ff609fe4cb (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,552 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.3-py3-none-any.whl#sha256=318602f99a18c2f77eed77d7d7a31b616d7bfada029a248fb8221754d7221291 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,553 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.2-py3-none-any.whl#sha256=b177947c8b9075f7b835b9ad5f571dc895ad7f503991562de2a08d1ad0a4b74d (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,554 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.1-py3-none-any.whl#sha256=968e1a9ef253338c2e1f85f1184ee77cb9d7e089e9b009aa88d7fe8706290de8 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,554 Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.0-py3-none-any.whl#sha256=1f437329a3ec8c1b3fd847a704e5185525a43b3b5fbb2370093c1d9620bed108 (from https://www.piwheels.org/simple/dnachisel/) 2025-01-27T18:03:08,555 Skipping link: not a file: https://www.piwheels.org/simple/dnachisel/ 2025-01-27T18:03:08,556 Skipping link: not a file: https://pypi.org/simple/dnachisel/ 2025-01-27T18:03:08,579 Given no hashes to check 1 links for project 'dnachisel': discarding no candidates 2025-01-27T18:03:08,581 Collecting dnachisel==3.2.13 2025-01-27T18:03:08,583 Created temporary directory: /tmp/pip-unpack-fsh0uva5 2025-01-27T18:03:08,724 Downloading dnachisel-3.2.13.tar.gz (1.5 MB) 2025-01-27T18:03:09,316 Added dnachisel==3.2.13 from https://files.pythonhosted.org/packages/1f/eb/bbed9f7b0c5c9c492c195ad88e381f854138822b8f8a8bd495917cd95c2e/dnachisel-3.2.13.tar.gz to build tracker '/tmp/pip-build-tracker-ew8jqd8u' 2025-01-27T18:03:09,317 Running setup.py (path:/tmp/pip-wheel-y3x47kwf/dnachisel_db844c97931b4f7fb2a88aaaf0aebfe6/setup.py) egg_info for package dnachisel 2025-01-27T18:03:09,318 Created temporary directory: /tmp/pip-pip-egg-info-4ctf8uhx 2025-01-27T18:03:09,319 Preparing metadata (setup.py): started 2025-01-27T18:03:09,320 Running command python setup.py egg_info 2025-01-27T18:03:10,412 running egg_info 2025-01-27T18:03:10,440 creating /tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info 2025-01-27T18:03:10,442 writing /tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/PKG-INFO 2025-01-27T18:03:10,448 writing dependency_links to /tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/dependency_links.txt 2025-01-27T18:03:10,452 writing requirements to /tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/requires.txt 2025-01-27T18:03:10,453 writing top-level names to /tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/top_level.txt 2025-01-27T18:03:10,455 writing manifest file '/tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/SOURCES.txt' 2025-01-27T18:03:10,587 reading manifest file '/tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/SOURCES.txt' 2025-01-27T18:03:10,589 reading manifest template 'MANIFEST.in' 2025-01-27T18:03:10,624 adding license file 'LICENCE.txt' 2025-01-27T18:03:10,632 writing manifest file '/tmp/pip-pip-egg-info-4ctf8uhx/dnachisel.egg-info/SOURCES.txt' 2025-01-27T18:03:10,741 Preparing metadata (setup.py): finished with status 'done' 2025-01-27T18:03:10,745 Source in /tmp/pip-wheel-y3x47kwf/dnachisel_db844c97931b4f7fb2a88aaaf0aebfe6 has version 3.2.13, which satisfies requirement dnachisel==3.2.13 from https://files.pythonhosted.org/packages/1f/eb/bbed9f7b0c5c9c492c195ad88e381f854138822b8f8a8bd495917cd95c2e/dnachisel-3.2.13.tar.gz 2025-01-27T18:03:10,746 Removed dnachisel==3.2.13 from https://files.pythonhosted.org/packages/1f/eb/bbed9f7b0c5c9c492c195ad88e381f854138822b8f8a8bd495917cd95c2e/dnachisel-3.2.13.tar.gz from build tracker '/tmp/pip-build-tracker-ew8jqd8u' 2025-01-27T18:03:10,755 Created temporary directory: /tmp/pip-unpack-yv3b5rb0 2025-01-27T18:03:10,756 Created temporary directory: /tmp/pip-unpack-pd8f0wgr 2025-01-27T18:03:10,757 Building wheels for collected packages: dnachisel 2025-01-27T18:03:10,761 Created temporary directory: /tmp/pip-wheel-2f1jc8rs 2025-01-27T18:03:10,762 Building wheel for dnachisel (setup.py): started 2025-01-27T18:03:10,763 Destination directory: /tmp/pip-wheel-2f1jc8rs 2025-01-27T18:03:10,763 Running command python setup.py bdist_wheel 2025-01-27T18:03:11,784 running bdist_wheel 2025-01-27T18:03:11,916 running build 2025-01-27T18:03:11,917 running build_py 2025-01-27T18:03:11,946 creating build/lib/dnachisel 2025-01-27T18:03:11,948 copying dnachisel/version.py -> build/lib/dnachisel 2025-01-27T18:03:11,951 copying dnachisel/__init__.py -> build/lib/dnachisel 2025-01-27T18:03:11,952 copying dnachisel/Location.py -> build/lib/dnachisel 2025-01-27T18:03:11,956 creating build/lib/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:11,957 copying dnachisel/DnaOptimizationProblem/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:11,959 copying dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/lib/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:11,960 copying dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:11,962 copying dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:11,965 creating build/lib/dnachisel/Specification 2025-01-27T18:03:11,966 copying dnachisel/Specification/Specification.py -> build/lib/dnachisel/Specification 2025-01-27T18:03:11,968 copying dnachisel/Specification/FeatureRepresentationMixin.py -> build/lib/dnachisel/Specification 2025-01-27T18:03:11,971 copying dnachisel/Specification/__init__.py -> build/lib/dnachisel/Specification 2025-01-27T18:03:11,972 copying dnachisel/Specification/SpecificationSet.py -> build/lib/dnachisel/Specification 2025-01-27T18:03:11,975 creating build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,976 copying dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,979 copying dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,981 copying dnachisel/builtin_specifications/EnforceTranslation.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,983 copying dnachisel/builtin_specifications/EnforceSequence.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,986 copying dnachisel/builtin_specifications/TerminalSpecification.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,988 copying dnachisel/builtin_specifications/AvoidMatches.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,990 copying dnachisel/builtin_specifications/EnforceChanges.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,992 copying dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,995 copying dnachisel/builtin_specifications/AvoidPattern.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,997 copying dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:11,999 copying dnachisel/builtin_specifications/AvoidStopCodons.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,001 copying dnachisel/builtin_specifications/__init__.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,003 copying dnachisel/builtin_specifications/EnforceChoice.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,004 copying dnachisel/builtin_specifications/AvoidHairpins.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,007 copying dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,008 copying dnachisel/builtin_specifications/AvoidChanges.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,011 copying dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,013 copying dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,015 copying dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,018 copying dnachisel/builtin_specifications/AllowPrimer.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,020 copying dnachisel/builtin_specifications/CodonSpecification.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,021 copying dnachisel/builtin_specifications/EnforceGCContent.py -> build/lib/dnachisel/builtin_specifications 2025-01-27T18:03:12,024 creating build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,026 copying dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,028 copying dnachisel/SequencePattern/HomopolymerPattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,030 copying dnachisel/SequencePattern/DnaNotationPattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,032 copying dnachisel/SequencePattern/__init__.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,033 copying dnachisel/SequencePattern/MotifPssmPattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,035 copying dnachisel/SequencePattern/EnzymeSitePattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,037 copying dnachisel/SequencePattern/SequencePattern.py -> build/lib/dnachisel/SequencePattern 2025-01-27T18:03:12,040 creating build/lib/dnachisel/utils 2025-01-27T18:03:12,041 copying dnachisel/utils/__init__.py -> build/lib/dnachisel/utils 2025-01-27T18:03:12,043 copying dnachisel/utils/utils.py -> build/lib/dnachisel/utils 2025-01-27T18:03:12,045 creating build/lib/dnachisel/biotools 2025-01-27T18:03:12,046 copying dnachisel/biotools/indices_operations.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,048 copying dnachisel/biotools/formatting_operations.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,050 copying dnachisel/biotools/sequences_differences.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,052 copying dnachisel/biotools/blast_sequence.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,054 copying dnachisel/biotools/genbank_operations.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,056 copying dnachisel/biotools/gc_content.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,058 copying dnachisel/biotools/enzymes_operations.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,060 copying dnachisel/biotools/__init__.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,062 copying dnachisel/biotools/random_sequences.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,064 copying dnachisel/biotools/sequences_operations.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,066 copying dnachisel/biotools/bowtie.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,068 copying dnachisel/biotools/biotables.py -> build/lib/dnachisel/biotools 2025-01-27T18:03:12,070 creating build/lib/dnachisel/MutationSpace 2025-01-27T18:03:12,071 copying dnachisel/MutationSpace/__init__.py -> build/lib/dnachisel/MutationSpace 2025-01-27T18:03:12,073 copying dnachisel/MutationSpace/MutationSpace.py -> build/lib/dnachisel/MutationSpace 2025-01-27T18:03:12,076 copying dnachisel/MutationSpace/MutationChoice.py -> build/lib/dnachisel/MutationSpace 2025-01-27T18:03:12,079 creating build/lib/dnachisel/reports 2025-01-27T18:03:12,080 copying dnachisel/reports/tools.py -> build/lib/dnachisel/reports 2025-01-27T18:03:12,082 copying dnachisel/reports/colors_cycle.py -> build/lib/dnachisel/reports 2025-01-27T18:03:12,084 copying dnachisel/reports/__init__.py -> build/lib/dnachisel/reports 2025-01-27T18:03:12,086 copying dnachisel/reports/SpecAnnotationsTranslator.py -> build/lib/dnachisel/reports 2025-01-27T18:03:12,088 copying dnachisel/reports/optimization_reports.py -> build/lib/dnachisel/reports 2025-01-27T18:03:12,091 creating build/lib/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,092 copying dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,094 copying dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,096 copying dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,099 copying dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,102 creating build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,103 copying dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,105 copying dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,107 copying dnachisel/Specification/SpecEvaluation/__init__.py -> build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,109 copying dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,112 copying dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/lib/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,115 creating build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,116 copying dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,119 copying dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,121 copying dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,123 copying dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,125 copying dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,127 copying dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,129 copying dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/lib/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,132 creating build/lib/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,133 copying dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/lib/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,135 copying dnachisel/reports/constraints_reports/__init__.py -> build/lib/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,137 copying dnachisel/reports/constraints_reports/constraints_reports.py -> build/lib/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,139 copying dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/lib/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,141 running egg_info 2025-01-27T18:03:12,168 writing dnachisel.egg-info/PKG-INFO 2025-01-27T18:03:12,175 writing dependency_links to dnachisel.egg-info/dependency_links.txt 2025-01-27T18:03:12,179 writing requirements to dnachisel.egg-info/requires.txt 2025-01-27T18:03:12,180 writing top-level names to dnachisel.egg-info/top_level.txt 2025-01-27T18:03:12,225 reading manifest file 'dnachisel.egg-info/SOURCES.txt' 2025-01-27T18:03:12,238 reading manifest template 'MANIFEST.in' 2025-01-27T18:03:12,270 adding license file 'LICENCE.txt' 2025-01-27T18:03:12,280 writing manifest file 'dnachisel.egg-info/SOURCES.txt' 2025-01-27T18:03:12,283 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'dnachisel.biotools.data' is absent from the `packages` configuration. 2025-01-27T18:03:12,284 !! 2025-01-27T18:03:12,285 ******************************************************************************** 2025-01-27T18:03:12,286 ############################ 2025-01-27T18:03:12,286 # Package would be ignored # 2025-01-27T18:03:12,287 ############################ 2025-01-27T18:03:12,287 Python recognizes 'dnachisel.biotools.data' as an importable package[^1], 2025-01-27T18:03:12,288 but it is absent from setuptools' `packages` configuration. 2025-01-27T18:03:12,288 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-27T18:03:12,289 package, please make sure that 'dnachisel.biotools.data' is explicitly added 2025-01-27T18:03:12,289 to the `packages` configuration field. 2025-01-27T18:03:12,290 Alternatively, you can also rely on setuptools' discovery methods 2025-01-27T18:03:12,291 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-27T18:03:12,291 instead of `find_packages(...)`/`find:`). 2025-01-27T18:03:12,292 You can read more about "package discovery" on setuptools documentation page: 2025-01-27T18:03:12,293 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-27T18:03:12,294 If you don't want 'dnachisel.biotools.data' to be distributed and are 2025-01-27T18:03:12,294 already explicitly excluding 'dnachisel.biotools.data' via 2025-01-27T18:03:12,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-27T18:03:12,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-27T18:03:12,295 combination with a more fine grained `package-data` configuration. 2025-01-27T18:03:12,296 You can read more about "package data files" on setuptools documentation page: 2025-01-27T18:03:12,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-27T18:03:12,299 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-27T18:03:12,299 even if it does not contain any `.py` files. 2025-01-27T18:03:12,300 On the other hand, currently there is no concept of package data 2025-01-27T18:03:12,300 directory, all directories are treated like packages. 2025-01-27T18:03:12,301 ******************************************************************************** 2025-01-27T18:03:12,302 !! 2025-01-27T18:03:12,302 check.warn(importable) 2025-01-27T18:03:12,303 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'dnachisel.reports.assets' is absent from the `packages` configuration. 2025-01-27T18:03:12,303 !! 2025-01-27T18:03:12,305 ******************************************************************************** 2025-01-27T18:03:12,305 ############################ 2025-01-27T18:03:12,306 # Package would be ignored # 2025-01-27T18:03:12,307 ############################ 2025-01-27T18:03:12,307 Python recognizes 'dnachisel.reports.assets' as an importable package[^1], 2025-01-27T18:03:12,308 but it is absent from setuptools' `packages` configuration. 2025-01-27T18:03:12,309 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-27T18:03:12,309 package, please make sure that 'dnachisel.reports.assets' is explicitly added 2025-01-27T18:03:12,310 to the `packages` configuration field. 2025-01-27T18:03:12,311 Alternatively, you can also rely on setuptools' discovery methods 2025-01-27T18:03:12,311 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-27T18:03:12,312 instead of `find_packages(...)`/`find:`). 2025-01-27T18:03:12,314 You can read more about "package discovery" on setuptools documentation page: 2025-01-27T18:03:12,315 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-27T18:03:12,316 If you don't want 'dnachisel.reports.assets' to be distributed and are 2025-01-27T18:03:12,316 already explicitly excluding 'dnachisel.reports.assets' via 2025-01-27T18:03:12,317 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-27T18:03:12,318 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-27T18:03:12,318 combination with a more fine grained `package-data` configuration. 2025-01-27T18:03:12,319 You can read more about "package data files" on setuptools documentation page: 2025-01-27T18:03:12,320 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-27T18:03:12,321 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-27T18:03:12,322 even if it does not contain any `.py` files. 2025-01-27T18:03:12,322 On the other hand, currently there is no concept of package data 2025-01-27T18:03:12,323 directory, all directories are treated like packages. 2025-01-27T18:03:12,323 ******************************************************************************** 2025-01-27T18:03:12,324 !! 2025-01-27T18:03:12,324 check.warn(importable) 2025-01-27T18:03:12,325 creating build/lib/dnachisel/biotools/data 2025-01-27T18:03:12,325 copying dnachisel/biotools/data/README.md -> build/lib/dnachisel/biotools/data 2025-01-27T18:03:12,326 copying dnachisel/biotools/data/complements.csv -> build/lib/dnachisel/biotools/data 2025-01-27T18:03:12,326 copying dnachisel/biotools/data/iupac_notation.csv -> build/lib/dnachisel/biotools/data 2025-01-27T18:03:12,327 copying dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/lib/dnachisel/biotools/data 2025-01-27T18:03:12,327 creating build/lib/dnachisel/reports/assets 2025-01-27T18:03:12,328 copying dnachisel/reports/assets/logo.png -> build/lib/dnachisel/reports/assets 2025-01-27T18:03:12,328 copying dnachisel/reports/assets/optimization_report.pug -> build/lib/dnachisel/reports/assets 2025-01-27T18:03:12,329 copying dnachisel/reports/assets/style.css -> build/lib/dnachisel/reports/assets 2025-01-27T18:03:12,331 running build_scripts 2025-01-27T18:03:12,331 creating build/scripts-3.11 2025-01-27T18:03:12,332 copying and adjusting scripts/dnachisel -> build/scripts-3.11 2025-01-27T18:03:12,333 changing mode of build/scripts-3.11/dnachisel from 644 to 755 2025-01-27T18:03:12,360 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-27T18:03:12,360 !! 2025-01-27T18:03:12,361 ******************************************************************************** 2025-01-27T18:03:12,362 Please avoid running ``setup.py`` directly. 2025-01-27T18:03:12,362 Instead, use pypa/build, pypa/installer or other 2025-01-27T18:03:12,363 standards-based tools. 2025-01-27T18:03:12,364 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-27T18:03:12,365 ******************************************************************************** 2025-01-27T18:03:12,366 !! 2025-01-27T18:03:12,366 self.initialize_options() 2025-01-27T18:03:12,386 installing to build/bdist.linux-armv7l/wheel 2025-01-27T18:03:12,387 running install 2025-01-27T18:03:12,412 running install_lib 2025-01-27T18:03:12,439 creating build/bdist.linux-armv7l/wheel 2025-01-27T18:03:12,442 creating build/bdist.linux-armv7l/wheel/dnachisel 2025-01-27T18:03:12,444 creating build/bdist.linux-armv7l/wheel/dnachisel/DnaOptimizationProblem 2025-01-27T18:03:12,445 copying build/lib/dnachisel/DnaOptimizationProblem/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem 2025-01-27T18:03:12,447 copying build/lib/dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem 2025-01-27T18:03:12,450 creating build/bdist.linux-armv7l/wheel/dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,451 copying build/lib/dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,453 copying build/lib/dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,455 copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,458 copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins 2025-01-27T18:03:12,460 copying build/lib/dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem 2025-01-27T18:03:12,462 copying build/lib/dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem 2025-01-27T18:03:12,465 creating build/bdist.linux-armv7l/wheel/dnachisel/Specification 2025-01-27T18:03:12,466 copying build/lib/dnachisel/Specification/Specification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification 2025-01-27T18:03:12,469 copying build/lib/dnachisel/Specification/FeatureRepresentationMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification 2025-01-27T18:03:12,472 creating build/bdist.linux-armv7l/wheel/dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,473 copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,475 copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,477 copying build/lib/dnachisel/Specification/SpecEvaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,479 copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,481 copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation 2025-01-27T18:03:12,484 copying build/lib/dnachisel/Specification/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification 2025-01-27T18:03:12,486 copying build/lib/dnachisel/Specification/SpecificationSet.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification 2025-01-27T18:03:12,489 creating build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications 2025-01-27T18:03:12,490 copying build/lib/dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,492 copying build/lib/dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,495 copying build/lib/dnachisel/builtin_specifications/EnforceTranslation.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,497 copying build/lib/dnachisel/builtin_specifications/EnforceSequence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,500 creating build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,502 copying build/lib/dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,504 copying build/lib/dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,507 copying build/lib/dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,509 copying build/lib/dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,512 copying build/lib/dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,514 copying build/lib/dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,517 copying build/lib/dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization 2025-01-27T18:03:12,519 copying build/lib/dnachisel/builtin_specifications/TerminalSpecification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,521 copying build/lib/dnachisel/builtin_specifications/AvoidMatches.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,524 copying build/lib/dnachisel/builtin_specifications/EnforceChanges.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,527 copying build/lib/dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,529 copying build/lib/dnachisel/builtin_specifications/AvoidPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,532 copying build/lib/dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,534 copying build/lib/dnachisel/builtin_specifications/AvoidStopCodons.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,536 copying build/lib/dnachisel/builtin_specifications/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,538 copying build/lib/dnachisel/builtin_specifications/EnforceChoice.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,540 copying build/lib/dnachisel/builtin_specifications/AvoidHairpins.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,543 copying build/lib/dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,545 copying build/lib/dnachisel/builtin_specifications/AvoidChanges.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,547 copying build/lib/dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,550 copying build/lib/dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,552 copying build/lib/dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,555 copying build/lib/dnachisel/builtin_specifications/AllowPrimer.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,558 copying build/lib/dnachisel/builtin_specifications/CodonSpecification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,560 copying build/lib/dnachisel/builtin_specifications/EnforceGCContent.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications 2025-01-27T18:03:12,563 creating build/bdist.linux-armv7l/wheel/dnachisel/SequencePattern 2025-01-27T18:03:12,565 copying build/lib/dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,567 copying build/lib/dnachisel/SequencePattern/HomopolymerPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,570 copying build/lib/dnachisel/SequencePattern/DnaNotationPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,572 copying build/lib/dnachisel/SequencePattern/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,574 copying build/lib/dnachisel/SequencePattern/MotifPssmPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,576 copying build/lib/dnachisel/SequencePattern/EnzymeSitePattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,579 copying build/lib/dnachisel/SequencePattern/SequencePattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern 2025-01-27T18:03:12,581 copying build/lib/dnachisel/version.py -> build/bdist.linux-armv7l/wheel/./dnachisel 2025-01-27T18:03:12,583 copying build/lib/dnachisel/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel 2025-01-27T18:03:12,586 creating build/bdist.linux-armv7l/wheel/dnachisel/utils 2025-01-27T18:03:12,587 copying build/lib/dnachisel/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/utils 2025-01-27T18:03:12,589 copying build/lib/dnachisel/utils/utils.py -> build/bdist.linux-armv7l/wheel/./dnachisel/utils 2025-01-27T18:03:12,592 creating build/bdist.linux-armv7l/wheel/dnachisel/biotools 2025-01-27T18:03:12,594 copying build/lib/dnachisel/biotools/indices_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,596 copying build/lib/dnachisel/biotools/formatting_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,598 copying build/lib/dnachisel/biotools/sequences_differences.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,601 creating build/bdist.linux-armv7l/wheel/dnachisel/biotools/data 2025-01-27T18:03:12,602 copying build/lib/dnachisel/biotools/data/complements.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data 2025-01-27T18:03:12,605 copying build/lib/dnachisel/biotools/data/README.md -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data 2025-01-27T18:03:12,607 copying build/lib/dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data 2025-01-27T18:03:12,609 copying build/lib/dnachisel/biotools/data/iupac_notation.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data 2025-01-27T18:03:12,611 copying build/lib/dnachisel/biotools/blast_sequence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,613 copying build/lib/dnachisel/biotools/genbank_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,616 copying build/lib/dnachisel/biotools/gc_content.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,618 copying build/lib/dnachisel/biotools/enzymes_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,620 copying build/lib/dnachisel/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,622 copying build/lib/dnachisel/biotools/random_sequences.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,625 copying build/lib/dnachisel/biotools/sequences_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,627 copying build/lib/dnachisel/biotools/bowtie.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,629 copying build/lib/dnachisel/biotools/biotables.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools 2025-01-27T18:03:12,631 copying build/lib/dnachisel/Location.py -> build/bdist.linux-armv7l/wheel/./dnachisel 2025-01-27T18:03:12,634 creating build/bdist.linux-armv7l/wheel/dnachisel/MutationSpace 2025-01-27T18:03:12,635 copying build/lib/dnachisel/MutationSpace/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace 2025-01-27T18:03:12,637 copying build/lib/dnachisel/MutationSpace/MutationSpace.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace 2025-01-27T18:03:12,640 copying build/lib/dnachisel/MutationSpace/MutationChoice.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace 2025-01-27T18:03:12,642 creating build/bdist.linux-armv7l/wheel/dnachisel/reports 2025-01-27T18:03:12,644 copying build/lib/dnachisel/reports/tools.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports 2025-01-27T18:03:12,646 creating build/bdist.linux-armv7l/wheel/dnachisel/reports/assets 2025-01-27T18:03:12,647 copying build/lib/dnachisel/reports/assets/logo.png -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets 2025-01-27T18:03:12,650 copying build/lib/dnachisel/reports/assets/optimization_report.pug -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets 2025-01-27T18:03:12,652 copying build/lib/dnachisel/reports/assets/style.css -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets 2025-01-27T18:03:12,654 copying build/lib/dnachisel/reports/colors_cycle.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports 2025-01-27T18:03:12,656 creating build/bdist.linux-armv7l/wheel/dnachisel/reports/constraints_reports 2025-01-27T18:03:12,658 copying build/lib/dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports 2025-01-27T18:03:12,660 copying build/lib/dnachisel/reports/constraints_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports 2025-01-27T18:03:12,661 copying build/lib/dnachisel/reports/constraints_reports/constraints_reports.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports 2025-01-27T18:03:12,663 copying build/lib/dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports 2025-01-27T18:03:12,666 copying build/lib/dnachisel/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports 2025-01-27T18:03:12,668 copying build/lib/dnachisel/reports/SpecAnnotationsTranslator.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports 2025-01-27T18:03:12,670 copying build/lib/dnachisel/reports/optimization_reports.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports 2025-01-27T18:03:12,672 running install_egg_info 2025-01-27T18:03:12,706 Copying dnachisel.egg-info to build/bdist.linux-armv7l/wheel/./dnachisel-3.2.13-py3.11.egg-info 2025-01-27T18:03:12,716 running install_scripts 2025-01-27T18:03:12,718 creating build/bdist.linux-armv7l/wheel/dnachisel-3.2.13.data/scripts 2025-01-27T18:03:12,719 copying build/scripts-3.11/dnachisel -> build/bdist.linux-armv7l/wheel/dnachisel-3.2.13.data/scripts 2025-01-27T18:03:12,721 changing mode of build/bdist.linux-armv7l/wheel/dnachisel-3.2.13.data/scripts/dnachisel to 755 2025-01-27T18:03:12,738 creating build/bdist.linux-armv7l/wheel/dnachisel-3.2.13.dist-info/WHEEL 2025-01-27T18:03:12,740 creating '/tmp/pip-wheel-2f1jc8rs/dnachisel-3.2.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-27T18:03:12,743 adding 'dnachisel/Location.py' 2025-01-27T18:03:12,745 adding 'dnachisel/__init__.py' 2025-01-27T18:03:12,746 adding 'dnachisel/version.py' 2025-01-27T18:03:12,749 adding 'dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py' 2025-01-27T18:03:12,751 adding 'dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py' 2025-01-27T18:03:12,752 adding 'dnachisel/DnaOptimizationProblem/NoSolutionError.py' 2025-01-27T18:03:12,753 adding 'dnachisel/DnaOptimizationProblem/__init__.py' 2025-01-27T18:03:12,756 adding 'dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py' 2025-01-27T18:03:12,759 adding 'dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py' 2025-01-27T18:03:12,760 adding 'dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py' 2025-01-27T18:03:12,762 adding 'dnachisel/DnaOptimizationProblem/mixins/__init__.py' 2025-01-27T18:03:12,764 adding 'dnachisel/MutationSpace/MutationChoice.py' 2025-01-27T18:03:12,766 adding 'dnachisel/MutationSpace/MutationSpace.py' 2025-01-27T18:03:12,767 adding 'dnachisel/MutationSpace/__init__.py' 2025-01-27T18:03:12,769 adding 'dnachisel/SequencePattern/DnaNotationPattern.py' 2025-01-27T18:03:12,770 adding 'dnachisel/SequencePattern/EnzymeSitePattern.py' 2025-01-27T18:03:12,771 adding 'dnachisel/SequencePattern/HomopolymerPattern.py' 2025-01-27T18:03:12,773 adding 'dnachisel/SequencePattern/MotifPssmPattern.py' 2025-01-27T18:03:12,774 adding 'dnachisel/SequencePattern/RepeatedKmerPattern.py' 2025-01-27T18:03:12,776 adding 'dnachisel/SequencePattern/SequencePattern.py' 2025-01-27T18:03:12,777 adding 'dnachisel/SequencePattern/__init__.py' 2025-01-27T18:03:12,779 adding 'dnachisel/Specification/FeatureRepresentationMixin.py' 2025-01-27T18:03:12,781 adding 'dnachisel/Specification/Specification.py' 2025-01-27T18:03:12,783 adding 'dnachisel/Specification/SpecificationSet.py' 2025-01-27T18:03:12,784 adding 'dnachisel/Specification/__init__.py' 2025-01-27T18:03:12,785 adding 'dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py' 2025-01-27T18:03:12,787 adding 'dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py' 2025-01-27T18:03:12,788 adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluation.py' 2025-01-27T18:03:12,790 adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluations.py' 2025-01-27T18:03:12,791 adding 'dnachisel/Specification/SpecEvaluation/__init__.py' 2025-01-27T18:03:12,793 adding 'dnachisel/biotools/__init__.py' 2025-01-27T18:03:12,795 adding 'dnachisel/biotools/biotables.py' 2025-01-27T18:03:12,796 adding 'dnachisel/biotools/blast_sequence.py' 2025-01-27T18:03:12,798 adding 'dnachisel/biotools/bowtie.py' 2025-01-27T18:03:12,799 adding 'dnachisel/biotools/enzymes_operations.py' 2025-01-27T18:03:12,801 adding 'dnachisel/biotools/formatting_operations.py' 2025-01-27T18:03:12,802 adding 'dnachisel/biotools/gc_content.py' 2025-01-27T18:03:12,804 adding 'dnachisel/biotools/genbank_operations.py' 2025-01-27T18:03:12,805 adding 'dnachisel/biotools/indices_operations.py' 2025-01-27T18:03:12,807 adding 'dnachisel/biotools/random_sequences.py' 2025-01-27T18:03:12,808 adding 'dnachisel/biotools/sequences_differences.py' 2025-01-27T18:03:12,809 adding 'dnachisel/biotools/sequences_operations.py' 2025-01-27T18:03:12,811 adding 'dnachisel/biotools/data/README.md' 2025-01-27T18:03:12,812 adding 'dnachisel/biotools/data/complements.csv' 2025-01-27T18:03:12,813 adding 'dnachisel/biotools/data/iupac_notation.csv' 2025-01-27T18:03:12,815 adding 'dnachisel/biotools/data/nucleotide_to_regexpr.csv' 2025-01-27T18:03:12,817 adding 'dnachisel/builtin_specifications/AllowPrimer.py' 2025-01-27T18:03:12,819 adding 'dnachisel/builtin_specifications/AvoidBlastMatches.py' 2025-01-27T18:03:12,820 adding 'dnachisel/builtin_specifications/AvoidChanges.py' 2025-01-27T18:03:12,822 adding 'dnachisel/builtin_specifications/AvoidHairpins.py' 2025-01-27T18:03:12,823 adding 'dnachisel/builtin_specifications/AvoidHeterodimerization.py' 2025-01-27T18:03:12,825 adding 'dnachisel/builtin_specifications/AvoidMatches.py' 2025-01-27T18:03:12,827 adding 'dnachisel/builtin_specifications/AvoidPattern.py' 2025-01-27T18:03:12,828 adding 'dnachisel/builtin_specifications/AvoidStopCodons.py' 2025-01-27T18:03:12,830 adding 'dnachisel/builtin_specifications/CodonSpecification.py' 2025-01-27T18:03:12,832 adding 'dnachisel/builtin_specifications/EnforceChanges.py' 2025-01-27T18:03:12,833 adding 'dnachisel/builtin_specifications/EnforceChoice.py' 2025-01-27T18:03:12,835 adding 'dnachisel/builtin_specifications/EnforceGCContent.py' 2025-01-27T18:03:12,837 adding 'dnachisel/builtin_specifications/EnforceMeltingTemperature.py' 2025-01-27T18:03:12,839 adding 'dnachisel/builtin_specifications/EnforcePatternOccurence.py' 2025-01-27T18:03:12,840 adding 'dnachisel/builtin_specifications/EnforceRegionsCompatibility.py' 2025-01-27T18:03:12,842 adding 'dnachisel/builtin_specifications/EnforceSequence.py' 2025-01-27T18:03:12,843 adding 'dnachisel/builtin_specifications/EnforceTerminalGCContent.py' 2025-01-27T18:03:12,845 adding 'dnachisel/builtin_specifications/EnforceTranslation.py' 2025-01-27T18:03:12,846 adding 'dnachisel/builtin_specifications/SequenceLengthBounds.py' 2025-01-27T18:03:12,847 adding 'dnachisel/builtin_specifications/TerminalSpecification.py' 2025-01-27T18:03:12,849 adding 'dnachisel/builtin_specifications/UniquifyAllKmers.py' 2025-01-27T18:03:12,851 adding 'dnachisel/builtin_specifications/__init__.py' 2025-01-27T18:03:12,853 adding 'dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py' 2025-01-27T18:03:12,854 adding 'dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py' 2025-01-27T18:03:12,856 adding 'dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py' 2025-01-27T18:03:12,857 adding 'dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py' 2025-01-27T18:03:12,859 adding 'dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py' 2025-01-27T18:03:12,861 adding 'dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py' 2025-01-27T18:03:12,862 adding 'dnachisel/builtin_specifications/codon_optimization/__init__.py' 2025-01-27T18:03:12,864 adding 'dnachisel/reports/SpecAnnotationsTranslator.py' 2025-01-27T18:03:12,865 adding 'dnachisel/reports/__init__.py' 2025-01-27T18:03:12,866 adding 'dnachisel/reports/colors_cycle.py' 2025-01-27T18:03:12,868 adding 'dnachisel/reports/optimization_reports.py' 2025-01-27T18:03:12,870 adding 'dnachisel/reports/tools.py' 2025-01-27T18:03:12,874 adding 'dnachisel/reports/assets/logo.png' 2025-01-27T18:03:12,875 adding 'dnachisel/reports/assets/optimization_report.pug' 2025-01-27T18:03:12,877 adding 'dnachisel/reports/assets/style.css' 2025-01-27T18:03:12,878 adding 'dnachisel/reports/constraints_reports/GraphicTranslator.py' 2025-01-27T18:03:12,880 adding 'dnachisel/reports/constraints_reports/__init__.py' 2025-01-27T18:03:12,881 adding 'dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py' 2025-01-27T18:03:12,883 adding 'dnachisel/reports/constraints_reports/constraints_reports.py' 2025-01-27T18:03:12,884 adding 'dnachisel/utils/__init__.py' 2025-01-27T18:03:12,885 adding 'dnachisel/utils/utils.py' 2025-01-27T18:03:12,888 adding 'dnachisel-3.2.13.data/scripts/dnachisel' 2025-01-27T18:03:12,890 adding 'dnachisel-3.2.13.dist-info/LICENCE.txt' 2025-01-27T18:03:12,891 adding 'dnachisel-3.2.13.dist-info/METADATA' 2025-01-27T18:03:12,892 adding 'dnachisel-3.2.13.dist-info/WHEEL' 2025-01-27T18:03:12,893 adding 'dnachisel-3.2.13.dist-info/top_level.txt' 2025-01-27T18:03:12,895 adding 'dnachisel-3.2.13.dist-info/RECORD' 2025-01-27T18:03:12,899 removing build/bdist.linux-armv7l/wheel 2025-01-27T18:03:13,037 Building wheel for dnachisel (setup.py): finished with status 'done' 2025-01-27T18:03:13,046 Created wheel for dnachisel: filename=dnachisel-3.2.13-py3-none-any.whl size=146826 sha256=e7212affac159589271b61eb5f275203f33d550df6276f4d2fc1449e41944ef0 2025-01-27T18:03:13,047 Stored in directory: /tmp/pip-ephem-wheel-cache-7qbzv15x/wheels/3d/61/6e/13d52e0ccea017132f8a0d7bbd5ea5fb37320d02e8a788f2fc 2025-01-27T18:03:13,060 Successfully built dnachisel 2025-01-27T18:03:13,068 Removed build tracker: '/tmp/pip-build-tracker-ew8jqd8u'