2025-02-03T22:32:03,688 Created temporary directory: /tmp/pip-build-tracker-w_6bace8 2025-02-03T22:32:03,690 Initialized build tracking at /tmp/pip-build-tracker-w_6bace8 2025-02-03T22:32:03,690 Created build tracker: /tmp/pip-build-tracker-w_6bace8 2025-02-03T22:32:03,690 Entered build tracker: /tmp/pip-build-tracker-w_6bace8 2025-02-03T22:32:03,691 Created temporary directory: /tmp/pip-wheel-tjvjb7u4 2025-02-03T22:32:03,695 Created temporary directory: /tmp/pip-ephem-wheel-cache-c08tcczc 2025-02-03T22:32:03,739 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-03T22:32:03,742 2 location(s) to search for versions of nmdc-runtime: 2025-02-03T22:32:03,742 * https://pypi.org/simple/nmdc-runtime/ 2025-02-03T22:32:03,742 * https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-03T22:32:03,743 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2025-02-03T22:32:03,744 Getting page https://pypi.org/simple/nmdc-runtime/ 2025-02-03T22:32:03,745 Found index url https://pypi.org/simple/ 2025-02-03T22:32:03,966 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2025-02-03T22:32:03,980 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-02-03T22:32:03,981 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2025-02-03T22:32:03,982 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) 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https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-02-03T22:32:04,235 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-03T22:32:04,236 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2025-02-03T22:32:04,259 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2025-02-03T22:32:04,261 Collecting nmdc-runtime==2.3.0 2025-02-03T22:32:04,263 Created temporary directory: /tmp/pip-unpack-pu3jyogq 2025-02-03T22:32:04,486 Downloading nmdc_runtime-2.3.0.tar.gz (63.9 MB) 2025-02-03T22:32:18,889 Added nmdc-runtime==2.3.0 from https://files.pythonhosted.org/packages/3a/8d/35b5968fd7efb05836fb23a9381f50cfdf2c44b364aa151fdc5be5cace60/nmdc_runtime-2.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-w_6bace8' 2025-02-03T22:32:18,894 Running setup.py (path:/tmp/pip-wheel-tjvjb7u4/nmdc-runtime_3f221fed7e6941ea8a3e900136844c23/setup.py) egg_info for package nmdc-runtime 2025-02-03T22:32:18,896 Created temporary directory: /tmp/pip-pip-egg-info-o60yyc1v 2025-02-03T22:32:18,896 Preparing metadata (setup.py): started 2025-02-03T22:32:18,898 Running command python setup.py egg_info 2025-02-03T22:32:19,723 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-02-03T22:32:19,724 !! 2025-02-03T22:32:19,726 ******************************************************************************** 2025-02-03T22:32:19,727 Requirements should be satisfied by a PEP 517 installer. 2025-02-03T22:32:19,728 If you are using pip, you can try `pip install --use-pep517`. 2025-02-03T22:32:19,728 ******************************************************************************** 2025-02-03T22:32:19,730 !! 2025-02-03T22:32:19,730 dist.fetch_build_eggs(dist.setup_requires) 2025-02-03T22:32:23,013 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2025-02-03T22:32:23,014 Traceback (most recent call last): 2025-02-03T22:32:23,014 File "/tmp/pip-wheel-tjvjb7u4/nmdc-runtime_3f221fed7e6941ea8a3e900136844c23/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2025-02-03T22:32:23,014 section = defn.get("tool", {})[tool_name] 2025-02-03T22:32:23,015 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-02-03T22:32:23,015 KeyError: 'setuptools_scm' 2025-02-03T22:32:23,124 running egg_info 2025-02-03T22:32:23,155 creating /tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info 2025-02-03T22:32:23,156 writing /tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/PKG-INFO 2025-02-03T22:32:23,159 writing dependency_links to /tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/dependency_links.txt 2025-02-03T22:32:23,161 writing entry points to /tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/entry_points.txt 2025-02-03T22:32:23,162 writing top-level names to /tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/top_level.txt 2025-02-03T22:32:23,164 writing manifest file '/tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-03T22:32:23,368 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2025-02-03T22:32:23,376 reading manifest file '/tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-03T22:32:23,378 adding license file 'LICENSE' 2025-02-03T22:32:23,383 writing manifest file '/tmp/pip-pip-egg-info-o60yyc1v/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-03T22:32:23,497 Preparing metadata (setup.py): finished with status 'done' 2025-02-03T22:32:23,501 Source in /tmp/pip-wheel-tjvjb7u4/nmdc-runtime_3f221fed7e6941ea8a3e900136844c23 has version 2.3.0, which satisfies requirement nmdc-runtime==2.3.0 from https://files.pythonhosted.org/packages/3a/8d/35b5968fd7efb05836fb23a9381f50cfdf2c44b364aa151fdc5be5cace60/nmdc_runtime-2.3.0.tar.gz 2025-02-03T22:32:23,502 Removed nmdc-runtime==2.3.0 from https://files.pythonhosted.org/packages/3a/8d/35b5968fd7efb05836fb23a9381f50cfdf2c44b364aa151fdc5be5cace60/nmdc_runtime-2.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-w_6bace8' 2025-02-03T22:32:23,508 Created temporary directory: /tmp/pip-unpack-0chyegz_ 2025-02-03T22:32:23,509 Created temporary directory: /tmp/pip-unpack-_e117vdk 2025-02-03T22:32:23,510 Building wheels for collected packages: nmdc-runtime 2025-02-03T22:32:23,514 Created temporary directory: /tmp/pip-wheel-fxvb45nf 2025-02-03T22:32:23,514 Building wheel for nmdc-runtime (setup.py): started 2025-02-03T22:32:23,516 Destination directory: /tmp/pip-wheel-fxvb45nf 2025-02-03T22:32:23,517 Running command python setup.py bdist_wheel 2025-02-03T22:32:24,234 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-02-03T22:32:24,235 !! 2025-02-03T22:32:24,236 ******************************************************************************** 2025-02-03T22:32:24,237 Requirements should be satisfied by a PEP 517 installer. 2025-02-03T22:32:24,237 If you are using pip, you can try `pip install --use-pep517`. 2025-02-03T22:32:24,238 ******************************************************************************** 2025-02-03T22:32:24,239 !! 2025-02-03T22:32:24,239 dist.fetch_build_eggs(dist.setup_requires) 2025-02-03T22:32:24,807 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2025-02-03T22:32:24,807 Traceback (most recent call last): 2025-02-03T22:32:24,808 File "/tmp/pip-wheel-tjvjb7u4/nmdc-runtime_3f221fed7e6941ea8a3e900136844c23/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2025-02-03T22:32:24,809 section = defn.get("tool", {})[tool_name] 2025-02-03T22:32:24,810 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-02-03T22:32:24,810 KeyError: 'setuptools_scm' 2025-02-03T22:32:24,878 running bdist_wheel 2025-02-03T22:32:25,024 running build 2025-02-03T22:32:25,025 running build_py 2025-02-03T22:32:25,060 creating build/lib/nmdc_runtime 2025-02-03T22:32:25,062 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2025-02-03T22:32:25,064 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2025-02-03T22:32:25,066 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2025-02-03T22:32:25,067 copying nmdc_runtime/config.py -> build/lib/nmdc_runtime 2025-02-03T22:32:25,069 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2025-02-03T22:32:25,072 creating build/lib/nmdc_runtime/domain 2025-02-03T22:32:25,073 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2025-02-03T22:32:25,075 creating build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,076 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,078 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,081 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,083 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,084 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,087 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2025-02-03T22:32:25,090 creating build/lib/nmdc_runtime/site 2025-02-03T22:32:25,091 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,094 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,095 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,098 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,101 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,104 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2025-02-03T22:32:25,106 creating build/lib/nmdc_runtime/minter 2025-02-03T22:32:25,107 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2025-02-03T22:32:25,109 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2025-02-03T22:32:25,110 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2025-02-03T22:32:25,113 creating build/lib/nmdc_runtime/client 2025-02-03T22:32:25,114 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2025-02-03T22:32:25,116 creating build/lib/nmdc_runtime/core 2025-02-03T22:32:25,117 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2025-02-03T22:32:25,119 creating build/lib/nmdc_runtime/infrastructure 2025-02-03T22:32:25,120 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2025-02-03T22:32:25,122 creating build/lib/nmdc_runtime/domain/users 2025-02-03T22:32:25,123 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2025-02-03T22:32:25,125 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2025-02-03T22:32:25,127 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2025-02-03T22:32:25,129 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2025-02-03T22:32:25,131 creating build/lib/nmdc_runtime/site/normalization 2025-02-03T22:32:25,132 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2025-02-03T22:32:25,134 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2025-02-03T22:32:25,136 creating build/lib/nmdc_runtime/site/backup 2025-02-03T22:32:25,138 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2025-02-03T22:32:25,140 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2025-02-03T22:32:25,141 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2025-02-03T22:32:25,143 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2025-02-03T22:32:25,146 creating build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,147 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,150 copying nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,153 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,154 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,157 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,159 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,161 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,164 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,166 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,169 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,170 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,173 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-03T22:32:25,175 creating build/lib/nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,176 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,178 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,180 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,182 creating build/lib/nmdc_runtime/site/repair 2025-02-03T22:32:25,183 copying nmdc_runtime/site/repair/__init__.py -> build/lib/nmdc_runtime/site/repair 2025-02-03T22:32:25,185 copying nmdc_runtime/site/repair/database_updater.py -> build/lib/nmdc_runtime/site/repair 2025-02-03T22:32:25,188 creating build/lib/nmdc_runtime/site/export 2025-02-03T22:32:25,189 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2025-02-03T22:32:25,191 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2025-02-03T22:32:25,193 copying nmdc_runtime/site/export/ncbi_xml.py -> build/lib/nmdc_runtime/site/export 2025-02-03T22:32:25,196 copying nmdc_runtime/site/export/ncbi_xml_utils.py -> build/lib/nmdc_runtime/site/export 2025-02-03T22:32:25,199 creating build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,200 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,202 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,204 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,206 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,207 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2025-02-03T22:32:25,210 creating build/lib/nmdc_runtime/site/changesheets 2025-02-03T22:32:25,211 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2025-02-03T22:32:25,213 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2025-02-03T22:32:25,215 creating build/lib/nmdc_runtime/minter/domain 2025-02-03T22:32:25,216 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2025-02-03T22:32:25,218 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2025-02-03T22:32:25,220 creating build/lib/nmdc_runtime/minter/adapters 2025-02-03T22:32:25,221 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2025-02-03T22:32:25,222 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2025-02-03T22:32:25,225 creating build/lib/nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,226 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,227 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,230 creating build/lib/nmdc_runtime/core/exceptions 2025-02-03T22:32:25,231 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-03T22:32:25,233 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-03T22:32:25,234 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-03T22:32:25,237 creating build/lib/nmdc_runtime/core/db 2025-02-03T22:32:25,238 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2025-02-03T22:32:25,239 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2025-02-03T22:32:25,242 creating build/lib/nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,243 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,245 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,247 creating build/lib/nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,248 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,250 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,300 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-03T22:32:25,301 !! 2025-02-03T22:32:25,302 ******************************************************************************** 2025-02-03T22:32:25,303 Please avoid running ``setup.py`` directly. 2025-02-03T22:32:25,303 Instead, use pypa/build, pypa/installer or other 2025-02-03T22:32:25,304 standards-based tools. 2025-02-03T22:32:25,305 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-03T22:32:25,305 ******************************************************************************** 2025-02-03T22:32:25,306 !! 2025-02-03T22:32:25,307 self.initialize_options() 2025-02-03T22:32:25,330 installing to build/bdist.linux-armv7l/wheel 2025-02-03T22:32:25,330 running install 2025-02-03T22:32:25,355 running install_lib 2025-02-03T22:32:25,384 creating build/bdist.linux-armv7l/wheel 2025-02-03T22:32:25,386 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2025-02-03T22:32:25,388 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2025-02-03T22:32:25,389 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain 2025-02-03T22:32:25,392 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2025-02-03T22:32:25,393 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-03T22:32:25,395 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-03T22:32:25,397 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-03T22:32:25,398 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-03T22:32:25,401 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2025-02-03T22:32:25,402 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,404 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,406 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,408 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,410 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,413 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-03T22:32:25,415 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-03T22:32:25,417 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-03T22:32:25,419 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2025-02-03T22:32:25,420 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,423 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2025-02-03T22:32:25,425 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-02-03T22:32:25,426 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-02-03T22:32:25,428 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,430 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2025-02-03T22:32:25,431 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-03T22:32:25,433 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-03T22:32:25,435 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-03T22:32:25,437 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-03T22:32:25,439 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2025-02-03T22:32:25,440 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,443 copying build/lib/nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,446 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,447 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,450 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,452 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,454 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,457 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,460 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,462 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,464 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,466 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-03T22:32:25,469 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,470 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,472 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,473 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-03T22:32:25,476 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/repair 2025-02-03T22:32:25,477 copying build/lib/nmdc_runtime/site/repair/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-02-03T22:32:25,478 copying build/lib/nmdc_runtime/site/repair/database_updater.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-02-03T22:32:25,482 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2025-02-03T22:32:25,483 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-03T22:32:25,484 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-03T22:32:25,486 copying build/lib/nmdc_runtime/site/export/ncbi_xml.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-03T22:32:25,489 copying build/lib/nmdc_runtime/site/export/ncbi_xml_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-03T22:32:25,491 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,494 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,497 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,500 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2025-02-03T22:32:25,501 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-03T22:32:25,503 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-03T22:32:25,505 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-03T22:32:25,507 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-03T22:32:25,509 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-03T22:32:25,511 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2025-02-03T22:32:25,512 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-02-03T22:32:25,514 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-02-03T22:32:25,516 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-03T22:32:25,518 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2025-02-03T22:32:25,520 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2025-02-03T22:32:25,521 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-02-03T22:32:25,523 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-02-03T22:32:25,525 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-03T22:32:25,527 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2025-02-03T22:32:25,528 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-02-03T22:32:25,530 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-02-03T22:32:25,533 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,534 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,535 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-02-03T22:32:25,537 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-03T22:32:25,539 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-03T22:32:25,542 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2025-02-03T22:32:25,543 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/client 2025-02-03T22:32:25,545 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-03T22:32:25,547 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2025-02-03T22:32:25,548 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2025-02-03T22:32:25,549 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-03T22:32:25,551 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-03T22:32:25,553 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-03T22:32:25,555 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core 2025-02-03T22:32:25,557 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2025-02-03T22:32:25,558 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-02-03T22:32:25,560 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-02-03T22:32:25,563 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2025-02-03T22:32:25,564 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure 2025-02-03T22:32:25,566 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,568 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,569 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,571 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-02-03T22:32:25,573 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,574 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-02-03T22:32:25,576 copying build/lib/nmdc_runtime/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-03T22:32:25,578 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-03T22:32:25,580 running install_egg_info 2025-02-03T22:32:25,612 running egg_info 2025-02-03T22:32:25,641 writing nmdc_runtime.egg-info/PKG-INFO 2025-02-03T22:32:25,644 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2025-02-03T22:32:25,646 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2025-02-03T22:32:25,647 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2025-02-03T22:32:25,765 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2025-02-03T22:32:25,768 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-02-03T22:32:25,848 adding license file 'LICENSE' 2025-02-03T22:32:25,867 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-02-03T22:32:25,869 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/./nmdc_runtime-2.3.0-py3.11.egg-info 2025-02-03T22:32:25,879 running install_scripts 2025-02-03T22:32:25,892 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-2.3.0.dist-info/WHEEL 2025-02-03T22:32:25,894 creating '/tmp/pip-wheel-fxvb45nf/nmdc_runtime-2.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-03T22:32:25,896 adding 'nmdc_runtime/__init__.py' 2025-02-03T22:32:25,898 adding 'nmdc_runtime/config.py' 2025-02-03T22:32:25,899 adding 'nmdc_runtime/containers.py' 2025-02-03T22:32:25,900 adding 'nmdc_runtime/main.py' 2025-02-03T22:32:25,904 adding 'nmdc_runtime/util.py' 2025-02-03T22:32:25,906 adding 'nmdc_runtime/client/__init__.py' 2025-02-03T22:32:25,907 adding 'nmdc_runtime/core/__init__.py' 2025-02-03T22:32:25,909 adding 'nmdc_runtime/core/db/Database.py' 2025-02-03T22:32:25,910 adding 'nmdc_runtime/core/db/__init__.py' 2025-02-03T22:32:25,911 adding 'nmdc_runtime/core/exceptions/__init__.py' 2025-02-03T22:32:25,913 adding 'nmdc_runtime/core/exceptions/base.py' 2025-02-03T22:32:25,914 adding 'nmdc_runtime/core/exceptions/token.py' 2025-02-03T22:32:25,915 adding 'nmdc_runtime/domain/__init__.py' 2025-02-03T22:32:25,917 adding 'nmdc_runtime/domain/users/__init__.py' 2025-02-03T22:32:25,918 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2025-02-03T22:32:25,919 adding 'nmdc_runtime/domain/users/userSchema.py' 2025-02-03T22:32:25,920 adding 'nmdc_runtime/domain/users/userService.py' 2025-02-03T22:32:25,922 adding 'nmdc_runtime/infrastructure/__init__.py' 2025-02-03T22:32:25,923 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2025-02-03T22:32:25,924 adding 'nmdc_runtime/infrastructure/database/db.py' 2025-02-03T22:32:25,926 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2025-02-03T22:32:25,927 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2025-02-03T22:32:25,929 adding 'nmdc_runtime/lib/__init__.py' 2025-02-03T22:32:25,930 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2025-02-03T22:32:25,932 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2025-02-03T22:32:25,935 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2025-02-03T22:32:25,937 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2025-02-03T22:32:25,942 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2025-02-03T22:32:25,944 adding 'nmdc_runtime/minter/__init__.py' 2025-02-03T22:32:25,945 adding 'nmdc_runtime/minter/bootstrap.py' 2025-02-03T22:32:25,947 adding 'nmdc_runtime/minter/config.py' 2025-02-03T22:32:25,948 adding 'nmdc_runtime/minter/adapters/__init__.py' 2025-02-03T22:32:25,950 adding 'nmdc_runtime/minter/adapters/repository.py' 2025-02-03T22:32:25,951 adding 'nmdc_runtime/minter/domain/__init__.py' 2025-02-03T22:32:25,953 adding 'nmdc_runtime/minter/domain/model.py' 2025-02-03T22:32:25,954 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2025-02-03T22:32:25,955 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2025-02-03T22:32:25,957 adding 'nmdc_runtime/site/__init__.py' 2025-02-03T22:32:25,959 adding 'nmdc_runtime/site/graphs.py' 2025-02-03T22:32:25,964 adding 'nmdc_runtime/site/ops.py' 2025-02-03T22:32:25,967 adding 'nmdc_runtime/site/repository.py' 2025-02-03T22:32:25,969 adding 'nmdc_runtime/site/resources.py' 2025-02-03T22:32:25,971 adding 'nmdc_runtime/site/util.py' 2025-02-03T22:32:25,972 adding 'nmdc_runtime/site/backup/__init__.py' 2025-02-03T22:32:25,973 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2025-02-03T22:32:25,975 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2025-02-03T22:32:25,976 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2025-02-03T22:32:25,977 adding 'nmdc_runtime/site/changesheets/__init__.py' 2025-02-03T22:32:25,979 adding 'nmdc_runtime/site/changesheets/base.py' 2025-02-03T22:32:25,980 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2025-02-03T22:32:25,982 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2025-02-03T22:32:25,983 adding 'nmdc_runtime/site/drsobjects/registration.py' 2025-02-03T22:32:25,984 adding 'nmdc_runtime/site/export/__init__.py' 2025-02-03T22:32:25,987 adding 'nmdc_runtime/site/export/ncbi_xml.py' 2025-02-03T22:32:25,989 adding 'nmdc_runtime/site/export/ncbi_xml_utils.py' 2025-02-03T22:32:25,990 adding 'nmdc_runtime/site/export/study_metadata.py' 2025-02-03T22:32:25,992 adding 'nmdc_runtime/site/normalization/__init__.py' 2025-02-03T22:32:25,993 adding 'nmdc_runtime/site/normalization/gold.py' 2025-02-03T22:32:25,995 adding 'nmdc_runtime/site/repair/__init__.py' 2025-02-03T22:32:25,997 adding 'nmdc_runtime/site/repair/database_updater.py' 2025-02-03T22:32:25,998 adding 'nmdc_runtime/site/translation/__init__.py' 2025-02-03T22:32:26,000 adding 'nmdc_runtime/site/translation/emsl.py' 2025-02-03T22:32:26,001 adding 'nmdc_runtime/site/translation/gold.py' 2025-02-03T22:32:26,004 adding 'nmdc_runtime/site/translation/gold_translator.py' 2025-02-03T22:32:26,006 adding 'nmdc_runtime/site/translation/jgi.py' 2025-02-03T22:32:26,008 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2025-02-03T22:32:26,012 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2025-02-03T22:32:26,015 adding 'nmdc_runtime/site/translation/neon_surface_water_translator.py' 2025-02-03T22:32:26,017 adding 'nmdc_runtime/site/translation/neon_utils.py' 2025-02-03T22:32:26,020 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2025-02-03T22:32:26,022 adding 'nmdc_runtime/site/translation/translator.py' 2025-02-03T22:32:26,023 adding 'nmdc_runtime/site/translation/util.py' 2025-02-03T22:32:26,024 adding 'nmdc_runtime/site/validation/__init__.py' 2025-02-03T22:32:26,026 adding 'nmdc_runtime/site/validation/emsl.py' 2025-02-03T22:32:26,027 adding 'nmdc_runtime/site/validation/gold.py' 2025-02-03T22:32:26,028 adding 'nmdc_runtime/site/validation/jgi.py' 2025-02-03T22:32:26,029 adding 'nmdc_runtime/site/validation/util.py' 2025-02-03T22:32:26,031 adding 'nmdc_runtime-2.3.0.dist-info/LICENSE' 2025-02-03T22:32:26,033 adding 'nmdc_runtime-2.3.0.dist-info/METADATA' 2025-02-03T22:32:26,034 adding 'nmdc_runtime-2.3.0.dist-info/WHEEL' 2025-02-03T22:32:26,035 adding 'nmdc_runtime-2.3.0.dist-info/entry_points.txt' 2025-02-03T22:32:26,036 adding 'nmdc_runtime-2.3.0.dist-info/top_level.txt' 2025-02-03T22:32:26,037 adding 'nmdc_runtime-2.3.0.dist-info/RECORD' 2025-02-03T22:32:26,041 removing build/bdist.linux-armv7l/wheel 2025-02-03T22:32:26,182 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2025-02-03T22:32:26,186 Created wheel for nmdc-runtime: filename=nmdc_runtime-2.3.0-py3-none-any.whl size=134148 sha256=89b1e037a58f26c71897b460d659b85999b68dc894036ed63520efda8bb3cd0b 2025-02-03T22:32:26,187 Stored in directory: /tmp/pip-ephem-wheel-cache-c08tcczc/wheels/4d/34/ef/a5a7115cb7e89e01491423f6679679eea6d64856c38f45cf78 2025-02-03T22:32:26,200 Successfully built nmdc-runtime 2025-02-03T22:32:26,207 Removed build tracker: '/tmp/pip-build-tracker-w_6bace8'