2025-02-04T15:45:26,649 Created temporary directory: /tmp/pip-build-tracker-zclb4b7u
2025-02-04T15:45:26,651 Initialized build tracking at /tmp/pip-build-tracker-zclb4b7u
2025-02-04T15:45:26,651 Created build tracker: /tmp/pip-build-tracker-zclb4b7u
2025-02-04T15:45:26,652 Entered build tracker: /tmp/pip-build-tracker-zclb4b7u
2025-02-04T15:45:26,652 Created temporary directory: /tmp/pip-wheel-3jmte2qg
2025-02-04T15:45:26,656 Created temporary directory: /tmp/pip-ephem-wheel-cache-_ki5n9mt
2025-02-04T15:45:26,701 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-02-04T15:45:26,703 2 location(s) to search for versions of rsalor:
2025-02-04T15:45:26,703 * https://pypi.org/simple/rsalor/
2025-02-04T15:45:26,703 * https://www.piwheels.org/simple/rsalor/
2025-02-04T15:45:26,704 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-02-04T15:45:26,705 Getting page https://pypi.org/simple/rsalor/
2025-02-04T15:45:26,706 Found index url https://pypi.org/simple/
2025-02-04T15:45:26,926 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-02-04T15:45:26,930   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-02-04T15:45:26,931   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-02-04T15:45:26,932   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-02-04T15:45:26,933   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-02-04T15:45:26,934   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-02-04T15:45:26,935   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-02-04T15:45:26,936   Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6
2025-02-04T15:45:26,937   Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7
2025-02-04T15:45:26,938   Found link https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.8
2025-02-04T15:45:26,939   Found link https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.9
2025-02-04T15:45:26,940   Found link https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.1.0
2025-02-04T15:45:26,941 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-02-04T15:45:26,942 Getting page https://www.piwheels.org/simple/rsalor/
2025-02-04T15:45:26,943 Found index url https://www.piwheels.org/simple/
2025-02-04T15:45:27,107 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-02-04T15:45:27,116   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp39-cp39-linux_armv6l.whl#sha256=aa1deae9c86299d35fe658c5c6aa9835e1b928611ba04f8302b24fe3f5705eae (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,118   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp39-cp39-linux_armv7l.whl#sha256=aa1deae9c86299d35fe658c5c6aa9835e1b928611ba04f8302b24fe3f5705eae (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,118   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,119   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,120   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv6l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,120   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv7l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,121   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,122   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,122   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,123   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,123   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,124   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,124   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,125   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,126   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,126   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,127   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,127   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,128   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,128   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,129   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,129   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,130   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,130   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,131   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,131   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,132   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,132   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-02-04T15:45:27,133 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-02-04T15:45:27,135 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-02-04T15:45:27,155 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-02-04T15:45:27,157 Collecting rsalor==1.1.0
2025-02-04T15:45:27,160   Created temporary directory: /tmp/pip-unpack-kbwhmruc
2025-02-04T15:45:27,386   Downloading rsalor-1.1.0.tar.gz (49 kB)
2025-02-04T15:45:27,530   Added rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-zclb4b7u'
2025-02-04T15:45:27,533   Running setup.py (path:/tmp/pip-wheel-3jmte2qg/rsalor_ae6e4c5a939a4acaa50ed350128db784/setup.py) egg_info for package rsalor
2025-02-04T15:45:27,534   Created temporary directory: /tmp/pip-pip-egg-info-_rn87x_n
2025-02-04T15:45:27,534   Preparing metadata (setup.py): started
2025-02-04T15:45:27,536   Running command python setup.py egg_info
2025-02-04T15:45:28,632   running egg_info
2025-02-04T15:45:28,660   creating /tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info
2025-02-04T15:45:28,661   writing /tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/PKG-INFO
2025-02-04T15:45:28,665   writing dependency_links to /tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/dependency_links.txt
2025-02-04T15:45:28,667   writing requirements to /tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/requires.txt
2025-02-04T15:45:28,668   writing top-level names to /tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/top_level.txt
2025-02-04T15:45:28,669   writing manifest file '/tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/SOURCES.txt'
2025-02-04T15:45:28,795   reading manifest file '/tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/SOURCES.txt'
2025-02-04T15:45:28,797   reading manifest template 'MANIFEST.in'
2025-02-04T15:45:28,806   warning: no previously-included files found matching 'Logo.png'
2025-02-04T15:45:28,807   warning: no previously-included files found matching 'fig/*'
2025-02-04T15:45:28,807   warning: no previously-included files found matching 'src/*'
2025-02-04T15:45:28,808   warning: no previously-included files found matching 'tmp/*'
2025-02-04T15:45:28,809   warning: no previously-included files found matching '0_*'
2025-02-04T15:45:28,809   warning: no previously-included files found matching 'conda-env.yml'
2025-02-04T15:45:28,810   warning: no previously-included files found matching 'test_data/*'
2025-02-04T15:45:28,811   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-02-04T15:45:28,811   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-02-04T15:45:28,812   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-02-04T15:45:28,812   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-02-04T15:45:28,813   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-02-04T15:45:28,814   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-02-04T15:45:28,814   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-02-04T15:45:28,815   adding license file 'LICENCE'
2025-02-04T15:45:28,817   writing manifest file '/tmp/pip-pip-egg-info-_rn87x_n/rsalor.egg-info/SOURCES.txt'
2025-02-04T15:45:28,925   Preparing metadata (setup.py): finished with status 'done'
2025-02-04T15:45:28,929   Source in /tmp/pip-wheel-3jmte2qg/rsalor_ae6e4c5a939a4acaa50ed350128db784 has version 1.1.0, which satisfies requirement rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz
2025-02-04T15:45:28,931   Removed rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-zclb4b7u'
2025-02-04T15:45:28,938 Created temporary directory: /tmp/pip-unpack-q3w70ui9
2025-02-04T15:45:28,939 Created temporary directory: /tmp/pip-unpack-d51z2poz
2025-02-04T15:45:28,940 Building wheels for collected packages: rsalor
2025-02-04T15:45:28,946   Created temporary directory: /tmp/pip-wheel-uxxosehj
2025-02-04T15:45:28,947   Building wheel for rsalor (setup.py): started
2025-02-04T15:45:28,948   Destination directory: /tmp/pip-wheel-uxxosehj
2025-02-04T15:45:28,949   Running command python setup.py bdist_wheel
2025-02-04T15:45:30,182   running bdist_wheel
2025-02-04T15:45:30,312   running build
2025-02-04T15:45:30,313   running build_py
2025-02-04T15:45:30,344   creating build/lib.linux-armv7l-cpython-311/rsalor
2025-02-04T15:45:30,346   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-02-04T15:45:30,348   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-02-04T15:45:30,352   creating build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,353   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,356   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,358   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,360   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,361   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-02-04T15:45:30,364   creating build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-02-04T15:45:30,365   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-02-04T15:45:30,368   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-02-04T15:45:30,371   creating build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-02-04T15:45:30,372   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-02-04T15:45:30,374   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-02-04T15:45:30,376   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-02-04T15:45:30,379   creating build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,380   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,382   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,384   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,387   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,389   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,392   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-02-04T15:45:30,394   creating build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,395   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,398   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,399   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,402   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,404   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-02-04T15:45:30,411   running build_ext
2025-02-04T15:45:30,877   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-02-04T15:45:30,878   creating build/temp.linux-armv7l-cpython-311/rsalor/weights
2025-02-04T15:45:30,880   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3
2025-02-04T15:45:32,448   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-02-04T15:45:32,448   rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-02-04T15:45:32,449      38 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-02-04T15:45:32,449         |                    ~~^~~~~~~~~~~
2025-02-04T15:45:32,916   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3
2025-02-04T15:45:37,795   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -O3
2025-02-04T15:45:38,078   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-02-04T15:45:38,078   !!

2025-02-04T15:45:38,080           ********************************************************************************
2025-02-04T15:45:38,080           Please avoid running ``setup.py`` directly.
2025-02-04T15:45:38,081           Instead, use pypa/build, pypa/installer or other
2025-02-04T15:45:38,082           standards-based tools.

2025-02-04T15:45:38,083           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-02-04T15:45:38,083           ********************************************************************************

2025-02-04T15:45:38,084   !!
2025-02-04T15:45:38,085     self.initialize_options()
2025-02-04T15:45:38,105   installing to build/bdist.linux-armv7l/wheel
2025-02-04T15:45:38,106   running install
2025-02-04T15:45:38,131   running install_lib
2025-02-04T15:45:38,159   creating build/bdist.linux-armv7l/wheel
2025-02-04T15:45:38,162   creating build/bdist.linux-armv7l/wheel/rsalor
2025-02-04T15:45:38,163   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-02-04T15:45:38,165   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-02-04T15:45:38,167   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-02-04T15:45:38,170   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-02-04T15:45:38,172   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-02-04T15:45:38,173   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-02-04T15:45:38,176   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-02-04T15:45:38,177   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-02-04T15:45:38,180   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-02-04T15:45:38,182   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-02-04T15:45:38,192   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-02-04T15:45:38,194   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-02-04T15:45:38,196   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-02-04T15:45:38,198   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-02-04T15:45:38,200   copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-02-04T15:45:38,202   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-02-04T15:45:38,203   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,205   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,208   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,210   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,212   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,215   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-02-04T15:45:38,217   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-02-04T15:45:38,219   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-02-04T15:45:38,222   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-02-04T15:45:38,223   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-02-04T15:45:38,226   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-02-04T15:45:38,228   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-02-04T15:45:38,230   copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-02-04T15:45:38,233   running install_egg_info
2025-02-04T15:45:38,266   running egg_info
2025-02-04T15:45:38,293   writing rsalor.egg-info/PKG-INFO
2025-02-04T15:45:38,296   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-02-04T15:45:38,298   writing requirements to rsalor.egg-info/requires.txt
2025-02-04T15:45:38,299   writing top-level names to rsalor.egg-info/top_level.txt
2025-02-04T15:45:38,336   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-02-04T15:45:38,340   reading manifest template 'MANIFEST.in'
2025-02-04T15:45:38,346   warning: no previously-included files found matching 'Logo.png'
2025-02-04T15:45:38,347   warning: no previously-included files found matching 'fig/*'
2025-02-04T15:45:38,348   warning: no previously-included files found matching 'src/*'
2025-02-04T15:45:38,348   warning: no previously-included files found matching 'tmp/*'
2025-02-04T15:45:38,349   warning: no previously-included files found matching '0_*'
2025-02-04T15:45:38,350   warning: no previously-included files found matching 'conda-env.yml'
2025-02-04T15:45:38,350   warning: no previously-included files found matching 'test_data/*'
2025-02-04T15:45:38,351   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-02-04T15:45:38,352   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-02-04T15:45:38,353   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-02-04T15:45:38,353   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-02-04T15:45:38,354   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-02-04T15:45:38,354   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-02-04T15:45:38,355   adding license file 'LICENCE'
2025-02-04T15:45:38,358   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-02-04T15:45:38,359   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.1.0-py3.11.egg-info
2025-02-04T15:45:38,370   running install_scripts
2025-02-04T15:45:38,428   creating build/bdist.linux-armv7l/wheel/rsalor-1.1.0.dist-info/WHEEL
2025-02-04T15:45:38,430   creating '/tmp/pip-wheel-uxxosehj/rsalor-1.1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-02-04T15:45:38,432   adding 'rsalor/__init__.py'
2025-02-04T15:45:38,438   adding 'rsalor/msa.py'
2025-02-04T15:45:38,439   adding 'rsalor/rsa/__init__.py'
2025-02-04T15:45:38,441   adding 'rsalor/rsa/rsa_biopython.py'
2025-02-04T15:45:38,442   adding 'rsalor/rsa/rsa_dssp.py'
2025-02-04T15:45:38,444   adding 'rsalor/rsa/rsa_music.py'
2025-02-04T15:45:38,446   adding 'rsalor/rsa/rsa_solver.py'
2025-02-04T15:45:38,447   adding 'rsalor/sequence/__init__.py'
2025-02-04T15:45:38,450   adding 'rsalor/sequence/amino_acid.py'
2025-02-04T15:45:38,451   adding 'rsalor/sequence/fasta_reader.py'
2025-02-04T15:45:38,453   adding 'rsalor/sequence/mutation.py'
2025-02-04T15:45:38,455   adding 'rsalor/sequence/pairwise_alignment.py'
2025-02-04T15:45:38,456   adding 'rsalor/sequence/sequence.py'
2025-02-04T15:45:38,458   adding 'rsalor/structure/__init__.py'
2025-02-04T15:45:38,459   adding 'rsalor/structure/residue.py'
2025-02-04T15:45:38,461   adding 'rsalor/structure/structure.py'
2025-02-04T15:45:38,464   adding 'rsalor/utils/CSV.py'
2025-02-04T15:45:38,465   adding 'rsalor/utils/__init__.py'
2025-02-04T15:45:38,467   adding 'rsalor/utils/ali_to_fasta.py'
2025-02-04T15:45:38,468   adding 'rsalor/utils/logger.py'
2025-02-04T15:45:38,470   adding 'rsalor/utils/utils.py'
2025-02-04T15:45:38,471   adding 'rsalor/weights/__init__.py'
2025-02-04T15:45:38,473   adding 'rsalor/weights/compute_weights.py'
2025-02-04T15:45:38,567   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so'
2025-02-04T15:45:38,572   adding 'rsalor-1.1.0.dist-info/LICENCE'
2025-02-04T15:45:38,573   adding 'rsalor-1.1.0.dist-info/METADATA'
2025-02-04T15:45:38,574   adding 'rsalor-1.1.0.dist-info/WHEEL'
2025-02-04T15:45:38,575   adding 'rsalor-1.1.0.dist-info/top_level.txt'
2025-02-04T15:45:38,576   adding 'rsalor-1.1.0.dist-info/RECORD'
2025-02-04T15:45:38,580   removing build/bdist.linux-armv7l/wheel
2025-02-04T15:45:38,739   Building wheel for rsalor (setup.py): finished with status 'done'
2025-02-04T15:45:38,744   Created wheel for rsalor: filename=rsalor-1.1.0-cp311-cp311-linux_armv7l.whl size=226797 sha256=ed9913b0deb9109934a04202f0db914029efe571aa7d3de3b9d68767a848feab
2025-02-04T15:45:38,745   Stored in directory: /tmp/pip-ephem-wheel-cache-_ki5n9mt/wheels/1f/50/e4/270429df730f41d13a74e5605a96205b3c3840438005478b7b
2025-02-04T15:45:38,756 Successfully built rsalor
2025-02-04T15:45:38,764 Removed build tracker: '/tmp/pip-build-tracker-zclb4b7u'