2025-02-04T16:50:09,782 Disabling truststore because Python version isn't 3.10+ 2025-02-04T16:50:10,314 Created temporary directory: /tmp/pip-build-tracker-5qhieolf 2025-02-04T16:50:10,315 Initialized build tracking at /tmp/pip-build-tracker-5qhieolf 2025-02-04T16:50:10,315 Created build tracker: /tmp/pip-build-tracker-5qhieolf 2025-02-04T16:50:10,315 Entered build tracker: /tmp/pip-build-tracker-5qhieolf 2025-02-04T16:50:10,316 Created temporary directory: /tmp/pip-wheel-q75a2k3j 2025-02-04T16:50:10,321 Created temporary directory: /tmp/pip-ephem-wheel-cache-b9hlcti9 2025-02-04T16:50:10,368 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-04T16:50:10,372 2 location(s) to search for versions of rsalor: 2025-02-04T16:50:10,372 * https://pypi.org/simple/rsalor/ 2025-02-04T16:50:10,372 * https://www.piwheels.org/simple/rsalor/ 2025-02-04T16:50:10,372 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2025-02-04T16:50:10,372 Getting page https://pypi.org/simple/rsalor/ 2025-02-04T16:50:10,374 Found index url https://pypi.org/simple/ 2025-02-04T16:50:10,474 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2025-02-04T16:50:10,477 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2025-02-04T16:50:10,477 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2025-02-04T16:50:10,478 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2025-02-04T16:50:10,478 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2025-02-04T16:50:10,479 Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4 2025-02-04T16:50:10,479 Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5 2025-02-04T16:50:10,480 Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6 2025-02-04T16:50:10,480 Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7 2025-02-04T16:50:10,481 Found link https://files.pythonhosted.org/packages/c3/33/8b81849d184c44b496db64263ea1062dab902c08712a9d75b9820ab52d8d/rsalor-1.0.8.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.8 2025-02-04T16:50:10,481 Found link https://files.pythonhosted.org/packages/ca/ac/fbfa29f2aeb071467cd7923f399b7089c3cd1cbcd78d64ed3c079fff4fce/rsalor-1.0.9.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.9 2025-02-04T16:50:10,482 Found link https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.1.0 2025-02-04T16:50:10,482 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2025-02-04T16:50:10,483 Getting page https://www.piwheels.org/simple/rsalor/ 2025-02-04T16:50:10,484 Found index url https://www.piwheels.org/simple/ 2025-02-04T16:50:10,530 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2025-02-04T16:50:10,540 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=ed9913b0deb9109934a04202f0db914029efe571aa7d3de3b9d68767a848feab (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,540 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=ed9913b0deb9109934a04202f0db914029efe571aa7d3de3b9d68767a848feab (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,540 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp39-cp39-linux_armv6l.whl#sha256=aa1deae9c86299d35fe658c5c6aa9835e1b928611ba04f8302b24fe3f5705eae (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,540 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp39-cp39-linux_armv7l.whl#sha256=aa1deae9c86299d35fe658c5c6aa9835e1b928611ba04f8302b24fe3f5705eae (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,540 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,541 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=0483e6ca367d8711ef705d07b839d75b9d42081e51749b59a0923438aeea35f7 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,541 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv6l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,541 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp311-cp311-linux_armv7l.whl#sha256=5e49133537f036105914cf6bc365d233fc889a1c4633eedbca481d2142cd64d9 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,541 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,541 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=f614a25e61d8226fd723c17deab0edc668efda1d7ea6b2e6fd6909833c45c369 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,542 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,542 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,542 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,542 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=1c287159f120fc399d97e299120dfc1241cc5fe0909bff2cbb358f0366602b24 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,542 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,543 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,543 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,543 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,543 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,543 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,544 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,545 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,545 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,545 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,545 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-02-04T16:50:10,546 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2025-02-04T16:50:10,546 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2025-02-04T16:50:10,563 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2025-02-04T16:50:10,565 Collecting rsalor==1.1.0 2025-02-04T16:50:10,567 Created temporary directory: /tmp/pip-unpack-pxtyaiw9 2025-02-04T16:50:10,666 Downloading rsalor-1.1.0.tar.gz (49 kB) 2025-02-04T16:50:10,760 Added rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-5qhieolf' 2025-02-04T16:50:10,762 Running setup.py (path:/tmp/pip-wheel-q75a2k3j/rsalor_eef1a5cd53cc4117bb10aed30168d9ad/setup.py) egg_info for package rsalor 2025-02-04T16:50:10,763 Created temporary directory: /tmp/pip-pip-egg-info-gk1aohky 2025-02-04T16:50:10,763 Preparing metadata (setup.py): started 2025-02-04T16:50:10,764 Running command python setup.py egg_info 2025-02-04T16:50:11,919 running egg_info 2025-02-04T16:50:11,947 creating /tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info 2025-02-04T16:50:11,948 writing /tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/PKG-INFO 2025-02-04T16:50:11,952 writing dependency_links to /tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/dependency_links.txt 2025-02-04T16:50:11,954 writing requirements to /tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/requires.txt 2025-02-04T16:50:11,955 writing top-level names to /tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/top_level.txt 2025-02-04T16:50:11,957 writing manifest file '/tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/SOURCES.txt' 2025-02-04T16:50:12,079 reading manifest file '/tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/SOURCES.txt' 2025-02-04T16:50:12,080 reading manifest template 'MANIFEST.in' 2025-02-04T16:50:12,088 warning: no previously-included files found matching 'Logo.png' 2025-02-04T16:50:12,088 warning: no previously-included files found matching 'fig/*' 2025-02-04T16:50:12,089 warning: no previously-included files found matching 'src/*' 2025-02-04T16:50:12,089 warning: no previously-included files found matching 'tmp/*' 2025-02-04T16:50:12,090 warning: no previously-included files found matching '0_*' 2025-02-04T16:50:12,091 warning: no previously-included files found matching 'conda-env.yml' 2025-02-04T16:50:12,091 warning: no previously-included files found matching 'test_data/*' 2025-02-04T16:50:12,092 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-02-04T16:50:12,093 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-02-04T16:50:12,093 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-02-04T16:50:12,094 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-02-04T16:50:12,095 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-02-04T16:50:12,096 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-02-04T16:50:12,096 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2025-02-04T16:50:12,097 adding license file 'LICENCE' 2025-02-04T16:50:12,101 writing manifest file '/tmp/pip-pip-egg-info-gk1aohky/rsalor.egg-info/SOURCES.txt' 2025-02-04T16:50:12,189 Preparing metadata (setup.py): finished with status 'done' 2025-02-04T16:50:12,194 Source in /tmp/pip-wheel-q75a2k3j/rsalor_eef1a5cd53cc4117bb10aed30168d9ad has version 1.1.0, which satisfies requirement rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz 2025-02-04T16:50:12,195 Removed rsalor==1.1.0 from https://files.pythonhosted.org/packages/a8/c7/adc10aa4ddc0e682bdccf1dc4a475ca99c007e9b1d51410d9c933a1c3d7a/rsalor-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-5qhieolf' 2025-02-04T16:50:12,203 Created temporary directory: /tmp/pip-unpack-dut4wx_k 2025-02-04T16:50:12,203 Created temporary directory: /tmp/pip-unpack-piicxzp0 2025-02-04T16:50:12,204 Building wheels for collected packages: rsalor 2025-02-04T16:50:12,208 Created temporary directory: /tmp/pip-wheel-qlttrxcg 2025-02-04T16:50:12,208 Building wheel for rsalor (setup.py): started 2025-02-04T16:50:12,209 Destination directory: /tmp/pip-wheel-qlttrxcg 2025-02-04T16:50:12,209 Running command python setup.py bdist_wheel 2025-02-04T16:50:13,234 running bdist_wheel 2025-02-04T16:50:13,369 running build 2025-02-04T16:50:13,369 running build_py 2025-02-04T16:50:13,399 creating build/lib.linux-armv7l-cpython-39/rsalor 2025-02-04T16:50:13,401 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-02-04T16:50:13,403 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-02-04T16:50:13,407 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,408 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,410 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,412 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,413 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,416 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-02-04T16:50:13,419 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-02-04T16:50:13,420 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-02-04T16:50:13,422 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-02-04T16:50:13,425 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,426 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,428 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,430 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,432 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,435 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-02-04T16:50:13,437 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-02-04T16:50:13,438 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-02-04T16:50:13,440 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-02-04T16:50:13,442 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-02-04T16:50:13,445 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,446 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,448 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,450 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,453 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,455 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,457 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-02-04T16:50:13,465 running build_ext 2025-02-04T16:50:13,957 building 'rsalor.weights.lib_computeWeightsBackend' extension 2025-02-04T16:50:13,958 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2025-02-04T16:50:13,961 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 2025-02-04T16:50:15,432 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2025-02-04T16:50:15,432 rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2025-02-04T16:50:15,432 38 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2025-02-04T16:50:15,432 | ~~^~~~~~~~~~~ 2025-02-04T16:50:15,854 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 2025-02-04T16:50:20,306 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -O3 2025-02-04T16:50:20,618 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-04T16:50:20,618 !! 2025-02-04T16:50:20,618 ******************************************************************************** 2025-02-04T16:50:20,618 Please avoid running ``setup.py`` directly. 2025-02-04T16:50:20,619 Instead, use pypa/build, pypa/installer or other 2025-02-04T16:50:20,619 standards-based tools. 2025-02-04T16:50:20,619 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-04T16:50:20,619 ******************************************************************************** 2025-02-04T16:50:20,619 !! 2025-02-04T16:50:20,619 self.initialize_options() 2025-02-04T16:50:20,645 installing to build/bdist.linux-armv7l/wheel 2025-02-04T16:50:20,645 running install 2025-02-04T16:50:20,671 running install_lib 2025-02-04T16:50:20,699 creating build/bdist.linux-armv7l/wheel 2025-02-04T16:50:20,703 creating build/bdist.linux-armv7l/wheel/rsalor 2025-02-04T16:50:20,705 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2025-02-04T16:50:20,706 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-02-04T16:50:20,708 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-02-04T16:50:20,710 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-02-04T16:50:20,712 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-02-04T16:50:20,715 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-02-04T16:50:20,716 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-02-04T16:50:20,719 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2025-02-04T16:50:20,720 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-02-04T16:50:20,722 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-02-04T16:50:20,724 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-02-04T16:50:20,735 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2025-02-04T16:50:20,737 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-02-04T16:50:20,739 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-02-04T16:50:20,741 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-02-04T16:50:20,743 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-02-04T16:50:20,745 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-02-04T16:50:20,748 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2025-02-04T16:50:20,749 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-02-04T16:50:20,751 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-02-04T16:50:20,753 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-02-04T16:50:20,755 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2025-02-04T16:50:20,756 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,758 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,760 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,762 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,764 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,767 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-02-04T16:50:20,769 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-02-04T16:50:20,771 running install_egg_info 2025-02-04T16:50:20,805 running egg_info 2025-02-04T16:50:20,835 writing rsalor.egg-info/PKG-INFO 2025-02-04T16:50:20,838 writing dependency_links to rsalor.egg-info/dependency_links.txt 2025-02-04T16:50:20,840 writing requirements to rsalor.egg-info/requires.txt 2025-02-04T16:50:20,841 writing top-level names to rsalor.egg-info/top_level.txt 2025-02-04T16:50:20,879 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2025-02-04T16:50:20,883 reading manifest template 'MANIFEST.in' 2025-02-04T16:50:20,889 warning: no previously-included files found matching 'Logo.png' 2025-02-04T16:50:20,890 warning: no previously-included files found matching 'fig/*' 2025-02-04T16:50:20,890 warning: no previously-included files found matching 'src/*' 2025-02-04T16:50:20,891 warning: no previously-included files found matching 'tmp/*' 2025-02-04T16:50:20,891 warning: no previously-included files found matching '0_*' 2025-02-04T16:50:20,892 warning: no previously-included files found matching 'conda-env.yml' 2025-02-04T16:50:20,892 warning: no previously-included files found matching 'test_data/*' 2025-02-04T16:50:20,893 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-02-04T16:50:20,894 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-02-04T16:50:20,895 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-02-04T16:50:20,896 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-02-04T16:50:20,896 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-02-04T16:50:20,897 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-02-04T16:50:20,898 adding license file 'LICENCE' 2025-02-04T16:50:20,903 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2025-02-04T16:50:20,904 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.1.0-py3.9.egg-info 2025-02-04T16:50:20,914 running install_scripts 2025-02-04T16:50:20,969 creating build/bdist.linux-armv7l/wheel/rsalor-1.1.0.dist-info/WHEEL 2025-02-04T16:50:20,971 creating '/tmp/pip-wheel-qlttrxcg/rsalor-1.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-04T16:50:20,974 adding 'rsalor/__init__.py' 2025-02-04T16:50:20,979 adding 'rsalor/msa.py' 2025-02-04T16:50:20,981 adding 'rsalor/rsa/__init__.py' 2025-02-04T16:50:20,982 adding 'rsalor/rsa/rsa_biopython.py' 2025-02-04T16:50:20,984 adding 'rsalor/rsa/rsa_dssp.py' 2025-02-04T16:50:20,986 adding 'rsalor/rsa/rsa_music.py' 2025-02-04T16:50:20,987 adding 'rsalor/rsa/rsa_solver.py' 2025-02-04T16:50:20,989 adding 'rsalor/sequence/__init__.py' 2025-02-04T16:50:20,992 adding 'rsalor/sequence/amino_acid.py' 2025-02-04T16:50:20,993 adding 'rsalor/sequence/fasta_reader.py' 2025-02-04T16:50:20,995 adding 'rsalor/sequence/mutation.py' 2025-02-04T16:50:20,997 adding 'rsalor/sequence/pairwise_alignment.py' 2025-02-04T16:50:20,998 adding 'rsalor/sequence/sequence.py' 2025-02-04T16:50:21,000 adding 'rsalor/structure/__init__.py' 2025-02-04T16:50:21,001 adding 'rsalor/structure/residue.py' 2025-02-04T16:50:21,003 adding 'rsalor/structure/structure.py' 2025-02-04T16:50:21,006 adding 'rsalor/utils/CSV.py' 2025-02-04T16:50:21,007 adding 'rsalor/utils/__init__.py' 2025-02-04T16:50:21,009 adding 'rsalor/utils/ali_to_fasta.py' 2025-02-04T16:50:21,010 adding 'rsalor/utils/logger.py' 2025-02-04T16:50:21,011 adding 'rsalor/utils/utils.py' 2025-02-04T16:50:21,013 adding 'rsalor/weights/__init__.py' 2025-02-04T16:50:21,015 adding 'rsalor/weights/compute_weights.py' 2025-02-04T16:50:21,112 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2025-02-04T16:50:21,118 adding 'rsalor-1.1.0.dist-info/LICENCE' 2025-02-04T16:50:21,119 adding 'rsalor-1.1.0.dist-info/METADATA' 2025-02-04T16:50:21,120 adding 'rsalor-1.1.0.dist-info/WHEEL' 2025-02-04T16:50:21,121 adding 'rsalor-1.1.0.dist-info/top_level.txt' 2025-02-04T16:50:21,122 adding 'rsalor-1.1.0.dist-info/RECORD' 2025-02-04T16:50:21,126 removing build/bdist.linux-armv7l/wheel 2025-02-04T16:50:21,262 Building wheel for rsalor (setup.py): finished with status 'done' 2025-02-04T16:50:21,267 Created wheel for rsalor: filename=rsalor-1.1.0-cp39-cp39-linux_armv7l.whl size=225390 sha256=294db857b8aa7eafbd52c208d70303ff766b810ac3e545be23a6450791245b39 2025-02-04T16:50:21,268 Stored in directory: /tmp/pip-ephem-wheel-cache-b9hlcti9/wheels/b8/aa/37/df7919a7fa1fec8522b39b598fb341a6324d6e8c41376134cb 2025-02-04T16:50:21,279 Successfully built rsalor 2025-02-04T16:50:21,288 Removed build tracker: '/tmp/pip-build-tracker-5qhieolf'