2025-02-11T03:21:55,500 Created temporary directory: /tmp/pip-build-tracker-qhkylz44 2025-02-11T03:21:55,502 Initialized build tracking at /tmp/pip-build-tracker-qhkylz44 2025-02-11T03:21:55,502 Created build tracker: /tmp/pip-build-tracker-qhkylz44 2025-02-11T03:21:55,503 Entered build tracker: /tmp/pip-build-tracker-qhkylz44 2025-02-11T03:21:55,504 Created temporary directory: /tmp/pip-wheel-b7m2k49f 2025-02-11T03:21:55,508 Created temporary directory: /tmp/pip-ephem-wheel-cache-2_qipiew 2025-02-11T03:21:55,552 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-11T03:21:55,555 2 location(s) to search for versions of codon-bias: 2025-02-11T03:21:55,555 * https://pypi.org/simple/codon-bias/ 2025-02-11T03:21:55,555 * https://www.piwheels.org/simple/codon-bias/ 2025-02-11T03:21:55,556 Fetching project page and analyzing links: https://pypi.org/simple/codon-bias/ 2025-02-11T03:21:55,556 Getting page https://pypi.org/simple/codon-bias/ 2025-02-11T03:21:55,558 Found index url https://pypi.org/simple/ 2025-02-11T03:21:55,780 Fetched page https://pypi.org/simple/codon-bias/ as application/vnd.pypi.simple.v1+json 2025-02-11T03:21:55,985 Found link https://files.pythonhosted.org/packages/17/35/c2e6fcb73d84d1f5035be8092cee3b2af06af723b84352638447529d227c/codon-bias-0.1.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.1.0 2025-02-11T03:21:56,107 Found link https://files.pythonhosted.org/packages/cc/4e/11bcc186f4618fba833af761d7d3e7598b3c57ee4d11f7c733790bb5db20/codon-bias-0.2.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.2.0 2025-02-11T03:21:56,110 Found link https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.0 2025-02-11T03:21:56,280 Found link https://files.pythonhosted.org/packages/03/9f/c0df251e0912595b2d5e55e61832c650c2453f95d1559cb864654e286126/codon-bias-0.3.1.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.1 2025-02-11T03:21:56,322 Found link https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.2 2025-02-11T03:21:56,387 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/93/54/c8f62181dbbe091c5441fb92e6d1d2000499befd02cf6c8ca278c251b9fc/codon_bias-0.3.2-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,450 Found link https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.3 2025-02-11T03:21:56,495 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/54/5d/abeb6cc53b8ef788668fe4020ea93e27bab526bdcba6e9194a64775597ea/codon_bias-0.3.3-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,526 Fetching project page and analyzing links: https://www.piwheels.org/simple/codon-bias/ 2025-02-11T03:21:56,528 Getting page https://www.piwheels.org/simple/codon-bias/ 2025-02-11T03:21:56,530 Found index url https://www.piwheels.org/simple/ 2025-02-11T03:21:56,730 Fetched page https://www.piwheels.org/simple/codon-bias/ as text/html 2025-02-11T03:21:56,733 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.2-py3-none-any.whl#sha256=7d19f79566e03ef7de880c81eea9659e1ab32de5f7c4cd6a42153627ed4d5c7b (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,734 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.1-py3-none-any.whl#sha256=26224a3549ff4812bed0265b7c0f62591b26ef8ff8ebfe7143916ff6f5ecea4c (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,734 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.0-py3-none-any.whl#sha256=d3bc123aaf0d19c1e1e0e294b090f33fb6784cdc5e271759162ecd80d8545586 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,735 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.2.0-py3-none-any.whl#sha256=54af1367ee5a968ac294644b098ab9e7b911598789435a083c12187ceeeb410e (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,736 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.1.0-py3-none-any.whl#sha256=45c2aa92ebf3bab8074d6a6e66799cacc106af5c5635b2eb1d6e2369f37a9ed8 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-02-11T03:21:56,736 Skipping link: not a file: https://www.piwheels.org/simple/codon-bias/ 2025-02-11T03:21:56,737 Skipping link: not a file: https://pypi.org/simple/codon-bias/ 2025-02-11T03:21:56,756 Given no hashes to check 1 links for project 'codon-bias': discarding no candidates 2025-02-11T03:21:56,758 Collecting codon-bias==0.3.3 2025-02-11T03:21:56,760 Created temporary directory: /tmp/pip-unpack-w20octhg 2025-02-11T03:21:56,983 Downloading codon-bias-0.3.3.tar.gz (103 kB) 2025-02-11T03:21:57,122 Added codon-bias==0.3.3 from https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-qhkylz44' 2025-02-11T03:21:57,124 Running setup.py (path:/tmp/pip-wheel-b7m2k49f/codon-bias_604a716ef8b44c7c84fb3a3b4cac1f08/setup.py) egg_info for package codon-bias 2025-02-11T03:21:57,124 Created temporary directory: /tmp/pip-pip-egg-info-5429e789 2025-02-11T03:21:57,125 Preparing metadata (setup.py): started 2025-02-11T03:21:57,126 Running command python setup.py egg_info 2025-02-11T03:22:00,450 No `name` configuration, performing automatic discovery 2025-02-11T03:22:03,729 running egg_info 2025-02-11T03:22:03,760 creating /tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info 2025-02-11T03:22:03,762 writing /tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/PKG-INFO 2025-02-11T03:22:03,766 writing dependency_links to /tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/dependency_links.txt 2025-02-11T03:22:03,770 writing requirements to /tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/requires.txt 2025-02-11T03:22:03,774 writing top-level names to /tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/top_level.txt 2025-02-11T03:22:03,776 writing manifest file '/tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/SOURCES.txt' 2025-02-11T03:22:03,869 reading manifest file '/tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/SOURCES.txt' 2025-02-11T03:22:03,871 reading manifest template 'MANIFEST.in' 2025-02-11T03:22:03,872 adding license file 'LICENSE' 2025-02-11T03:22:03,876 writing manifest file '/tmp/pip-pip-egg-info-5429e789/codon_bias.egg-info/SOURCES.txt' 2025-02-11T03:22:03,983 Preparing metadata (setup.py): finished with status 'done' 2025-02-11T03:22:03,987 Source in /tmp/pip-wheel-b7m2k49f/codon-bias_604a716ef8b44c7c84fb3a3b4cac1f08 has version 0.3.3, which satisfies requirement codon-bias==0.3.3 from https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz 2025-02-11T03:22:03,988 Removed codon-bias==0.3.3 from https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-qhkylz44' 2025-02-11T03:22:04,000 Created temporary directory: /tmp/pip-unpack-72tic288 2025-02-11T03:22:04,002 Created temporary directory: /tmp/pip-unpack-96qem74l 2025-02-11T03:22:04,003 Building wheels for collected packages: codon-bias 2025-02-11T03:22:04,017 Created temporary directory: /tmp/pip-wheel-xw2q_af6 2025-02-11T03:22:04,018 Building wheel for codon-bias (setup.py): started 2025-02-11T03:22:04,020 Destination directory: /tmp/pip-wheel-xw2q_af6 2025-02-11T03:22:04,020 Running command python setup.py bdist_wheel 2025-02-11T03:22:06,939 No `name` configuration, performing automatic discovery 2025-02-11T03:22:07,573 running bdist_wheel 2025-02-11T03:22:07,734 running build 2025-02-11T03:22:07,735 running build_py 2025-02-11T03:22:07,768 creating build/lib/codonbias 2025-02-11T03:22:07,770 copying codonbias/utils.py -> build/lib/codonbias 2025-02-11T03:22:07,774 copying codonbias/scores.py -> build/lib/codonbias 2025-02-11T03:22:07,778 copying codonbias/optimizers.py -> build/lib/codonbias 2025-02-11T03:22:07,782 copying codonbias/__init__.py -> build/lib/codonbias 2025-02-11T03:22:07,784 copying codonbias/random.py -> build/lib/codonbias 2025-02-11T03:22:07,788 copying codonbias/pairwise.py -> build/lib/codonbias 2025-02-11T03:22:07,791 copying codonbias/stats.py -> build/lib/codonbias 2025-02-11T03:22:07,794 running egg_info 2025-02-11T03:22:07,826 writing codon_bias.egg-info/PKG-INFO 2025-02-11T03:22:07,829 writing dependency_links to codon_bias.egg-info/dependency_links.txt 2025-02-11T03:22:07,832 writing requirements to codon_bias.egg-info/requires.txt 2025-02-11T03:22:07,833 writing top-level names to codon_bias.egg-info/top_level.txt 2025-02-11T03:22:07,872 reading manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-02-11T03:22:07,878 reading manifest template 'MANIFEST.in' 2025-02-11T03:22:07,879 adding license file 'LICENSE' 2025-02-11T03:22:07,883 writing manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-02-11T03:22:07,887 copying codonbias/genetic_code_ncbi.csv -> build/lib/codonbias 2025-02-11T03:22:07,890 copying codonbias/tAI_svalues_Tuller.csv -> build/lib/codonbias 2025-02-11T03:22:07,892 copying codonbias/tAI_svalues_dosReis.csv -> build/lib/codonbias 2025-02-11T03:22:07,925 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-11T03:22:07,925 !! 2025-02-11T03:22:07,926 ******************************************************************************** 2025-02-11T03:22:07,927 Please avoid running ``setup.py`` directly. 2025-02-11T03:22:07,928 Instead, use pypa/build, pypa/installer or other 2025-02-11T03:22:07,928 standards-based tools. 2025-02-11T03:22:07,930 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-11T03:22:07,930 ******************************************************************************** 2025-02-11T03:22:07,931 !! 2025-02-11T03:22:07,932 self.initialize_options() 2025-02-11T03:22:07,955 installing to build/bdist.linux-armv7l/wheel 2025-02-11T03:22:07,956 running install 2025-02-11T03:22:07,980 running install_lib 2025-02-11T03:22:08,008 creating build/bdist.linux-armv7l/wheel 2025-02-11T03:22:08,011 creating build/bdist.linux-armv7l/wheel/codonbias 2025-02-11T03:22:08,012 copying build/lib/codonbias/utils.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,016 copying build/lib/codonbias/scores.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,021 copying build/lib/codonbias/optimizers.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,024 copying build/lib/codonbias/tAI_svalues_dosReis.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,026 copying build/lib/codonbias/__init__.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,028 copying build/lib/codonbias/random.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,031 copying build/lib/codonbias/genetic_code_ncbi.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,034 copying build/lib/codonbias/tAI_svalues_Tuller.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,036 copying build/lib/codonbias/pairwise.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,039 copying build/lib/codonbias/stats.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-02-11T03:22:08,042 running install_egg_info 2025-02-11T03:22:08,078 Copying codon_bias.egg-info to build/bdist.linux-armv7l/wheel/./codon_bias-0.3.3-py3.11.egg-info 2025-02-11T03:22:08,089 running install_scripts 2025-02-11T03:22:08,105 creating build/bdist.linux-armv7l/wheel/codon_bias-0.3.3.dist-info/WHEEL 2025-02-11T03:22:08,108 creating '/tmp/pip-wheel-xw2q_af6/codon_bias-0.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-11T03:22:08,111 adding 'codonbias/__init__.py' 2025-02-11T03:22:08,113 adding 'codonbias/genetic_code_ncbi.csv' 2025-02-11T03:22:08,114 adding 'codonbias/optimizers.py' 2025-02-11T03:22:08,116 adding 'codonbias/pairwise.py' 2025-02-11T03:22:08,118 adding 'codonbias/random.py' 2025-02-11T03:22:08,123 adding 'codonbias/scores.py' 2025-02-11T03:22:08,125 adding 'codonbias/stats.py' 2025-02-11T03:22:08,127 adding 'codonbias/tAI_svalues_Tuller.csv' 2025-02-11T03:22:08,128 adding 'codonbias/tAI_svalues_dosReis.csv' 2025-02-11T03:22:08,131 adding 'codonbias/utils.py' 2025-02-11T03:22:08,132 adding 'codon_bias-0.3.3.dist-info/LICENSE' 2025-02-11T03:22:08,133 adding 'codon_bias-0.3.3.dist-info/METADATA' 2025-02-11T03:22:08,134 adding 'codon_bias-0.3.3.dist-info/WHEEL' 2025-02-11T03:22:08,135 adding 'codon_bias-0.3.3.dist-info/top_level.txt' 2025-02-11T03:22:08,136 adding 'codon_bias-0.3.3.dist-info/RECORD' 2025-02-11T03:22:08,138 removing build/bdist.linux-armv7l/wheel 2025-02-11T03:22:08,253 Building wheel for codon-bias (setup.py): finished with status 'done' 2025-02-11T03:22:08,256 Created wheel for codon-bias: filename=codon_bias-0.3.3-py3-none-any.whl size=27840 sha256=4541985ec3d294224e4bc6d70289c3c0b10b63af3d72879a0786bcd7c3186182 2025-02-11T03:22:08,258 Stored in directory: /tmp/pip-ephem-wheel-cache-2_qipiew/wheels/70/92/8e/d0a79d856eaca6796261d86647ff919f1aecec4cc3c3934be7 2025-02-11T03:22:08,270 Successfully built codon-bias 2025-02-11T03:22:08,275 Removed build tracker: '/tmp/pip-build-tracker-qhkylz44'