2025-02-12T21:41:44,528 Created temporary directory: /tmp/pip-build-tracker-4ke5qa_j
2025-02-12T21:41:44,529 Initialized build tracking at /tmp/pip-build-tracker-4ke5qa_j
2025-02-12T21:41:44,530 Created build tracker: /tmp/pip-build-tracker-4ke5qa_j
2025-02-12T21:41:44,530 Entered build tracker: /tmp/pip-build-tracker-4ke5qa_j
2025-02-12T21:41:44,531 Created temporary directory: /tmp/pip-wheel-l3vjod9g
2025-02-12T21:41:44,535 Created temporary directory: /tmp/pip-ephem-wheel-cache-0l50pqe5
2025-02-12T21:41:44,579 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-02-12T21:41:44,581 2 location(s) to search for versions of xi-covutils:
2025-02-12T21:41:44,581 * https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:44,581 * https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:44,582 Fetching project page and analyzing links: https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:44,583 Getting page https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:44,584 Found index url https://pypi.org/simple/
2025-02-12T21:41:44,730 Fetched page https://pypi.org/simple/xi-covutils/ as application/vnd.pypi.simple.v1+json
2025-02-12T21:41:44,733   Found link https://files.pythonhosted.org/packages/a5/58/c5e640c748d1a46295190c37b5031409df7abbe740a0870fc890fd054af1/xi_covutils-0.0.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.0.12
2025-02-12T21:41:44,734   Found link https://files.pythonhosted.org/packages/19/d7/44dc9d9136713a8ccaa45853a10580ac40c226937516bd3b52e5fa53c578/xi_covutils-0.1.9.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.9
2025-02-12T21:41:44,735   Found link https://files.pythonhosted.org/packages/6e/83/e8c26f0bd206b34b102c5c10c2afd77a4ebd39f802f7f658a3fc77177b19/xi_covutils-0.1.10.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.10
2025-02-12T21:41:44,736   Found link https://files.pythonhosted.org/packages/d5/a8/632798910d05b965a58a0db0057cc677f28d3c14bfa49fb65cf95024519e/xi_covutils-0.1.11.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.11
2025-02-12T21:41:44,736   Found link https://files.pythonhosted.org/packages/53/92/e91cb4baecaa4f0d394d64c6331418d5c56d160f4b2fe32d11c1014ea1f8/xi_covutils-0.1.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.12
2025-02-12T21:41:44,737   Found link https://files.pythonhosted.org/packages/66/97/c6cd687af28f65aa7141effdeee0a9310ede57884554e80d5964fac300e0/xi_covutils-0.1.13.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.13
2025-02-12T21:41:44,738   Found link https://files.pythonhosted.org/packages/fe/37/dbabf36b6c68f0435dc33f0c4b39c599d2e9db64f563478fedd1f3153432/xi_covutils-0.1.16.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.16
2025-02-12T21:41:44,738   Found link https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.17
2025-02-12T21:41:44,739   Found link https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.2.0
2025-02-12T21:41:44,740   Found link https://files.pythonhosted.org/packages/49/d7/7ed50ab7d2ce8f78e6ad597f7f6f390920e2ba742e3c896e65549c646cd7/xi_covutils-0.7.0.6.tar.gz (from https://pypi.org/simple/xi-covutils/) (requires-python:>=3.9), version: 0.7.0.6
2025-02-12T21:41:44,741 Fetching project page and analyzing links: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:44,741 Getting page https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:44,743 Found index url https://www.piwheels.org/simple/
2025-02-12T21:41:44,925 Fetched page https://www.piwheels.org/simple/xi-covutils/ as text/html
2025-02-12T21:41:44,926 Skipping link: not a file: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:44,927 Skipping link: not a file: https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:44,948 Given no hashes to check 1 links for project 'xi-covutils': discarding no candidates
2025-02-12T21:41:44,950 Collecting xi-covutils==0.1.17
2025-02-12T21:41:44,953   Created temporary directory: /tmp/pip-unpack-9bou7bvo
2025-02-12T21:41:45,169   Downloading xi_covutils-0.1.17.tar.gz (58 kB)
2025-02-12T21:41:45,266   Added xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz to build tracker '/tmp/pip-build-tracker-4ke5qa_j'
2025-02-12T21:41:45,268   Running setup.py (path:/tmp/pip-wheel-l3vjod9g/xi-covutils_18b0a597ebc04159ad7718ce267e0619/setup.py) egg_info for package xi-covutils
2025-02-12T21:41:45,268   Created temporary directory: /tmp/pip-pip-egg-info-xsw7eita
2025-02-12T21:41:45,269   Preparing metadata (setup.py): started
2025-02-12T21:41:45,270   Running command python setup.py egg_info
2025-02-12T21:41:46,329   running egg_info
2025-02-12T21:41:46,356   creating /tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info
2025-02-12T21:41:46,358   writing /tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/PKG-INFO
2025-02-12T21:41:46,361   writing dependency_links to /tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/dependency_links.txt
2025-02-12T21:41:46,363   writing requirements to /tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/requires.txt
2025-02-12T21:41:46,363   writing top-level names to /tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/top_level.txt
2025-02-12T21:41:46,365   writing manifest file '/tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:46,475   reading manifest file '/tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:46,476   reading manifest template 'MANIFEST.in'
2025-02-12T21:41:46,481   writing manifest file '/tmp/pip-pip-egg-info-xsw7eita/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:46,589   Preparing metadata (setup.py): finished with status 'done'
2025-02-12T21:41:46,593   Source in /tmp/pip-wheel-l3vjod9g/xi-covutils_18b0a597ebc04159ad7718ce267e0619 has version 0.1.17, which satisfies requirement xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz
2025-02-12T21:41:46,594   Removed xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz from build tracker '/tmp/pip-build-tracker-4ke5qa_j'
2025-02-12T21:41:46,599 Created temporary directory: /tmp/pip-unpack-uejb4gwp
2025-02-12T21:41:46,600 Created temporary directory: /tmp/pip-unpack-4_9elkp0
2025-02-12T21:41:46,600 Building wheels for collected packages: xi-covutils
2025-02-12T21:41:46,605   Created temporary directory: /tmp/pip-wheel-o5ls73jb
2025-02-12T21:41:46,605   Building wheel for xi-covutils (setup.py): started
2025-02-12T21:41:46,607   Destination directory: /tmp/pip-wheel-o5ls73jb
2025-02-12T21:41:46,607   Running command python setup.py bdist_wheel
2025-02-12T21:41:47,636   running bdist_wheel
2025-02-12T21:41:47,768   running build
2025-02-12T21:41:47,769   running build_py
2025-02-12T21:41:47,799   creating build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,801   copying xi_covutils/roc.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,804   copying xi_covutils/distances.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,806   copying xi_covutils/smooth.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,809   copying xi_covutils/read_results.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,811   copying xi_covutils/__init__.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,812   copying xi_covutils/clustering.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,815   copying xi_covutils/pdbmapper.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,817   copying xi_covutils/msa.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,819   running egg_info
2025-02-12T21:41:47,846   writing xi_covutils.egg-info/PKG-INFO
2025-02-12T21:41:47,849   writing dependency_links to xi_covutils.egg-info/dependency_links.txt
2025-02-12T21:41:47,850   writing requirements to xi_covutils.egg-info/requires.txt
2025-02-12T21:41:47,851   writing top-level names to xi_covutils.egg-info/top_level.txt
2025-02-12T21:41:47,882   reading manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:47,885   reading manifest template 'MANIFEST.in'
2025-02-12T21:41:47,889   writing manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:47,892   copying xi_covutils/aux_func.c -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:47,894   running build_ext
2025-02-12T21:41:48,363   building 'xi_covutils.aux' extension
2025-02-12T21:41:48,364   creating build/temp.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:48,366   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c xi_covutils/aux_func.c -o build/temp.linux-armv7l-cpython-311/xi_covutils/aux_func.o
2025-02-12T21:41:48,845   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xi_covutils/aux_func.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so
2025-02-12T21:41:48,966   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-02-12T21:41:48,967   !!

2025-02-12T21:41:48,968           ********************************************************************************
2025-02-12T21:41:48,968           Please avoid running ``setup.py`` directly.
2025-02-12T21:41:48,969           Instead, use pypa/build, pypa/installer or other
2025-02-12T21:41:48,970           standards-based tools.

2025-02-12T21:41:48,971           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-02-12T21:41:48,971           ********************************************************************************

2025-02-12T21:41:48,972   !!
2025-02-12T21:41:48,972     self.initialize_options()
2025-02-12T21:41:48,997   installing to build/bdist.linux-armv7l/wheel
2025-02-12T21:41:48,998   running install
2025-02-12T21:41:49,023   running install_lib
2025-02-12T21:41:49,050   creating build/bdist.linux-armv7l/wheel
2025-02-12T21:41:49,053   creating build/bdist.linux-armv7l/wheel/xi_covutils
2025-02-12T21:41:49,054   copying build/lib.linux-armv7l-cpython-311/xi_covutils/roc.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,057   copying build/lib.linux-armv7l-cpython-311/xi_covutils/distances.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,059   copying build/lib.linux-armv7l-cpython-311/xi_covutils/smooth.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,062   copying build/lib.linux-armv7l-cpython-311/xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,065   copying build/lib.linux-armv7l-cpython-311/xi_covutils/read_results.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,067   copying build/lib.linux-armv7l-cpython-311/xi_covutils/aux_func.c -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,069   copying build/lib.linux-armv7l-cpython-311/xi_covutils/__init__.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,071   copying build/lib.linux-armv7l-cpython-311/xi_covutils/clustering.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,073   copying build/lib.linux-armv7l-cpython-311/xi_covutils/pdbmapper.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,076   copying build/lib.linux-armv7l-cpython-311/xi_covutils/msa.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:49,078   running install_egg_info
2025-02-12T21:41:49,111   Copying xi_covutils.egg-info to build/bdist.linux-armv7l/wheel/./xi_covutils-0.1.17-py3.11.egg-info
2025-02-12T21:41:49,123   running install_scripts
2025-02-12T21:41:49,179   creating build/bdist.linux-armv7l/wheel/xi_covutils-0.1.17.dist-info/WHEEL
2025-02-12T21:41:49,182   creating '/tmp/pip-wheel-o5ls73jb/xi_covutils-0.1.17-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-02-12T21:41:49,185   adding 'xi_covutils/__init__.py'
2025-02-12T21:41:49,189   adding 'xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so'
2025-02-12T21:41:49,190   adding 'xi_covutils/aux_func.c'
2025-02-12T21:41:49,192   adding 'xi_covutils/clustering.py'
2025-02-12T21:41:49,194   adding 'xi_covutils/distances.py'
2025-02-12T21:41:49,197   adding 'xi_covutils/msa.py'
2025-02-12T21:41:49,199   adding 'xi_covutils/pdbmapper.py'
2025-02-12T21:41:49,201   adding 'xi_covutils/read_results.py'
2025-02-12T21:41:49,202   adding 'xi_covutils/roc.py'
2025-02-12T21:41:49,204   adding 'xi_covutils/smooth.py'
2025-02-12T21:41:49,206   adding 'xi_covutils-0.1.17.dist-info/METADATA'
2025-02-12T21:41:49,208   adding 'xi_covutils-0.1.17.dist-info/WHEEL'
2025-02-12T21:41:49,209   adding 'xi_covutils-0.1.17.dist-info/top_level.txt'
2025-02-12T21:41:49,210   adding 'xi_covutils-0.1.17.dist-info/RECORD'
2025-02-12T21:41:49,213   removing build/bdist.linux-armv7l/wheel
2025-02-12T21:41:49,361   Building wheel for xi-covutils (setup.py): finished with status 'done'
2025-02-12T21:41:49,363   Created wheel for xi-covutils: filename=xi_covutils-0.1.17-cp311-cp311-linux_armv7l.whl size=22528 sha256=9e40bda45d04f885da15de1a6a299e3a243c5628c3831acb56d0b38dcdddee3b
2025-02-12T21:41:49,364   Stored in directory: /tmp/pip-ephem-wheel-cache-0l50pqe5/wheels/00/01/29/150ff3490b08b93e11c5cce87de00e8911e0b746c4c848fff1
2025-02-12T21:41:49,373 Successfully built xi-covutils
2025-02-12T21:41:49,377 Removed build tracker: '/tmp/pip-build-tracker-4ke5qa_j'