2025-02-12T21:41:46,136 Created temporary directory: /tmp/pip-build-tracker-axur04_c
2025-02-12T21:41:46,138 Initialized build tracking at /tmp/pip-build-tracker-axur04_c
2025-02-12T21:41:46,138 Created build tracker: /tmp/pip-build-tracker-axur04_c
2025-02-12T21:41:46,139 Entered build tracker: /tmp/pip-build-tracker-axur04_c
2025-02-12T21:41:46,140 Created temporary directory: /tmp/pip-wheel-sunxzs43
2025-02-12T21:41:46,143 Created temporary directory: /tmp/pip-ephem-wheel-cache-2gq6y8ph
2025-02-12T21:41:46,187 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-02-12T21:41:46,190 2 location(s) to search for versions of xi-covutils:
2025-02-12T21:41:46,190 * https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:46,190 * https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:46,191 Fetching project page and analyzing links: https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:46,191 Getting page https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:46,193 Found index url https://pypi.org/simple/
2025-02-12T21:41:46,340 Fetched page https://pypi.org/simple/xi-covutils/ as application/vnd.pypi.simple.v1+json
2025-02-12T21:41:46,343   Found link https://files.pythonhosted.org/packages/a5/58/c5e640c748d1a46295190c37b5031409df7abbe740a0870fc890fd054af1/xi_covutils-0.0.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.0.12
2025-02-12T21:41:46,344   Found link https://files.pythonhosted.org/packages/19/d7/44dc9d9136713a8ccaa45853a10580ac40c226937516bd3b52e5fa53c578/xi_covutils-0.1.9.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.9
2025-02-12T21:41:46,345   Found link https://files.pythonhosted.org/packages/6e/83/e8c26f0bd206b34b102c5c10c2afd77a4ebd39f802f7f658a3fc77177b19/xi_covutils-0.1.10.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.10
2025-02-12T21:41:46,346   Found link https://files.pythonhosted.org/packages/d5/a8/632798910d05b965a58a0db0057cc677f28d3c14bfa49fb65cf95024519e/xi_covutils-0.1.11.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.11
2025-02-12T21:41:46,346   Found link https://files.pythonhosted.org/packages/53/92/e91cb4baecaa4f0d394d64c6331418d5c56d160f4b2fe32d11c1014ea1f8/xi_covutils-0.1.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.12
2025-02-12T21:41:46,347   Found link https://files.pythonhosted.org/packages/66/97/c6cd687af28f65aa7141effdeee0a9310ede57884554e80d5964fac300e0/xi_covutils-0.1.13.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.13
2025-02-12T21:41:46,348   Found link https://files.pythonhosted.org/packages/fe/37/dbabf36b6c68f0435dc33f0c4b39c599d2e9db64f563478fedd1f3153432/xi_covutils-0.1.16.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.16
2025-02-12T21:41:46,349   Found link https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.17
2025-02-12T21:41:46,349   Found link https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.2.0
2025-02-12T21:41:46,350   Found link https://files.pythonhosted.org/packages/49/d7/7ed50ab7d2ce8f78e6ad597f7f6f390920e2ba742e3c896e65549c646cd7/xi_covutils-0.7.0.6.tar.gz (from https://pypi.org/simple/xi-covutils/) (requires-python:>=3.9), version: 0.7.0.6
2025-02-12T21:41:46,351 Fetching project page and analyzing links: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:46,352 Getting page https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:46,353 Found index url https://www.piwheels.org/simple/
2025-02-12T21:41:46,530 Fetched page https://www.piwheels.org/simple/xi-covutils/ as text/html
2025-02-12T21:41:46,531 Skipping link: not a file: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T21:41:46,532 Skipping link: not a file: https://pypi.org/simple/xi-covutils/
2025-02-12T21:41:46,552 Given no hashes to check 1 links for project 'xi-covutils': discarding no candidates
2025-02-12T21:41:46,554 Collecting xi-covutils==0.2.0
2025-02-12T21:41:46,556   Created temporary directory: /tmp/pip-unpack-igx7igyc
2025-02-12T21:41:46,773   Downloading xi_covutils-0.2.0.tar.gz (58 kB)
2025-02-12T21:41:46,880   Added xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-axur04_c'
2025-02-12T21:41:46,882   Running setup.py (path:/tmp/pip-wheel-sunxzs43/xi-covutils_abea5c1b10bf422a9d139f1efd39312f/setup.py) egg_info for package xi-covutils
2025-02-12T21:41:46,883   Created temporary directory: /tmp/pip-pip-egg-info-pxl7evfv
2025-02-12T21:41:46,884   Preparing metadata (setup.py): started
2025-02-12T21:41:46,885   Running command python setup.py egg_info
2025-02-12T21:41:47,959   running egg_info
2025-02-12T21:41:47,986   creating /tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info
2025-02-12T21:41:47,987   writing /tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/PKG-INFO
2025-02-12T21:41:47,991   writing dependency_links to /tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/dependency_links.txt
2025-02-12T21:41:47,993   writing requirements to /tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/requires.txt
2025-02-12T21:41:47,994   writing top-level names to /tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/top_level.txt
2025-02-12T21:41:47,995   writing manifest file '/tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:48,110   reading manifest file '/tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:48,111   reading manifest template 'MANIFEST.in'
2025-02-12T21:41:48,117   writing manifest file '/tmp/pip-pip-egg-info-pxl7evfv/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:48,224   Preparing metadata (setup.py): finished with status 'done'
2025-02-12T21:41:48,227   Source in /tmp/pip-wheel-sunxzs43/xi-covutils_abea5c1b10bf422a9d139f1efd39312f has version 0.2.0, which satisfies requirement xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz
2025-02-12T21:41:48,228   Removed xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-axur04_c'
2025-02-12T21:41:48,233 Created temporary directory: /tmp/pip-unpack-wf7e4t1q
2025-02-12T21:41:48,234 Created temporary directory: /tmp/pip-unpack-ucv38dc3
2025-02-12T21:41:48,234 Building wheels for collected packages: xi-covutils
2025-02-12T21:41:48,238   Created temporary directory: /tmp/pip-wheel-urxe6062
2025-02-12T21:41:48,239   Building wheel for xi-covutils (setup.py): started
2025-02-12T21:41:48,240   Destination directory: /tmp/pip-wheel-urxe6062
2025-02-12T21:41:48,241   Running command python setup.py bdist_wheel
2025-02-12T21:41:49,250   running bdist_wheel
2025-02-12T21:41:49,381   running build
2025-02-12T21:41:49,382   running build_py
2025-02-12T21:41:49,411   creating build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,414   copying xi_covutils/pdbmapper.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,416   copying xi_covutils/distances.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,418   copying xi_covutils/clustering.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,420   copying xi_covutils/msa.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,422   copying xi_covutils/read_results.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,425   copying xi_covutils/roc.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,427   copying xi_covutils/smooth.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,429   copying xi_covutils/__init__.py -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,430   running egg_info
2025-02-12T21:41:49,457   writing xi_covutils.egg-info/PKG-INFO
2025-02-12T21:41:49,460   writing dependency_links to xi_covutils.egg-info/dependency_links.txt
2025-02-12T21:41:49,462   writing requirements to xi_covutils.egg-info/requires.txt
2025-02-12T21:41:49,463   writing top-level names to xi_covutils.egg-info/top_level.txt
2025-02-12T21:41:49,492   reading manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:49,495   reading manifest template 'MANIFEST.in'
2025-02-12T21:41:49,500   writing manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T21:41:49,503   copying xi_covutils/aux_func.c -> build/lib.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,506   running build_ext
2025-02-12T21:41:49,960   building 'xi_covutils.aux' extension
2025-02-12T21:41:49,961   creating build/temp.linux-armv7l-cpython-311/xi_covutils
2025-02-12T21:41:49,962   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c xi_covutils/aux_func.c -o build/temp.linux-armv7l-cpython-311/xi_covutils/aux_func.o
2025-02-12T21:41:50,447   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xi_covutils/aux_func.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so
2025-02-12T21:41:50,568   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-02-12T21:41:50,568   !!

2025-02-12T21:41:50,569           ********************************************************************************
2025-02-12T21:41:50,570           Please avoid running ``setup.py`` directly.
2025-02-12T21:41:50,570           Instead, use pypa/build, pypa/installer or other
2025-02-12T21:41:50,571           standards-based tools.

2025-02-12T21:41:50,572           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-02-12T21:41:50,572           ********************************************************************************

2025-02-12T21:41:50,573   !!
2025-02-12T21:41:50,574     self.initialize_options()
2025-02-12T21:41:50,596   installing to build/bdist.linux-armv7l/wheel
2025-02-12T21:41:50,597   running install
2025-02-12T21:41:50,622   running install_lib
2025-02-12T21:41:50,649   creating build/bdist.linux-armv7l/wheel
2025-02-12T21:41:50,651   creating build/bdist.linux-armv7l/wheel/xi_covutils
2025-02-12T21:41:50,653   copying build/lib.linux-armv7l-cpython-311/xi_covutils/aux_func.c -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,655   copying build/lib.linux-armv7l-cpython-311/xi_covutils/pdbmapper.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,657   copying build/lib.linux-armv7l-cpython-311/xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,659   copying build/lib.linux-armv7l-cpython-311/xi_covutils/distances.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,661   copying build/lib.linux-armv7l-cpython-311/xi_covutils/clustering.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,663   copying build/lib.linux-armv7l-cpython-311/xi_covutils/msa.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,665   copying build/lib.linux-armv7l-cpython-311/xi_covutils/read_results.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,667   copying build/lib.linux-armv7l-cpython-311/xi_covutils/roc.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,669   copying build/lib.linux-armv7l-cpython-311/xi_covutils/smooth.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,671   copying build/lib.linux-armv7l-cpython-311/xi_covutils/__init__.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T21:41:50,673   running install_egg_info
2025-02-12T21:41:50,706   Copying xi_covutils.egg-info to build/bdist.linux-armv7l/wheel/./xi_covutils-0.2.0-py3.11.egg-info
2025-02-12T21:41:50,717   running install_scripts
2025-02-12T21:41:50,773   creating build/bdist.linux-armv7l/wheel/xi_covutils-0.2.0.dist-info/WHEEL
2025-02-12T21:41:50,776   creating '/tmp/pip-wheel-urxe6062/xi_covutils-0.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-02-12T21:41:50,778   adding 'xi_covutils/__init__.py'
2025-02-12T21:41:50,782   adding 'xi_covutils/aux.cpython-311-arm-linux-gnueabihf.so'
2025-02-12T21:41:50,783   adding 'xi_covutils/aux_func.c'
2025-02-12T21:41:50,785   adding 'xi_covutils/clustering.py'
2025-02-12T21:41:50,786   adding 'xi_covutils/distances.py'
2025-02-12T21:41:50,788   adding 'xi_covutils/msa.py'
2025-02-12T21:41:50,790   adding 'xi_covutils/pdbmapper.py'
2025-02-12T21:41:50,791   adding 'xi_covutils/read_results.py'
2025-02-12T21:41:50,793   adding 'xi_covutils/roc.py'
2025-02-12T21:41:50,794   adding 'xi_covutils/smooth.py'
2025-02-12T21:41:50,796   adding 'xi_covutils-0.2.0.dist-info/METADATA'
2025-02-12T21:41:50,797   adding 'xi_covutils-0.2.0.dist-info/WHEEL'
2025-02-12T21:41:50,798   adding 'xi_covutils-0.2.0.dist-info/top_level.txt'
2025-02-12T21:41:50,799   adding 'xi_covutils-0.2.0.dist-info/RECORD'
2025-02-12T21:41:50,800   removing build/bdist.linux-armv7l/wheel
2025-02-12T21:41:50,946   Building wheel for xi-covutils (setup.py): finished with status 'done'
2025-02-12T21:41:50,949   Created wheel for xi-covutils: filename=xi_covutils-0.2.0-cp311-cp311-linux_armv7l.whl size=22470 sha256=8e70e87f0e1f2cfe6d07591dac2e763ac4da5533ef132690af4bed779e9a556f
2025-02-12T21:41:50,951   Stored in directory: /tmp/pip-ephem-wheel-cache-2gq6y8ph/wheels/b9/a1/e2/fe9946a19737321f54f749ad58972c9749cc9ca16107752ec9
2025-02-12T21:41:50,960 Successfully built xi-covutils
2025-02-12T21:41:50,963 Removed build tracker: '/tmp/pip-build-tracker-axur04_c'