2025-02-12T22:42:50,127 Disabling truststore because Python version isn't 3.10+
2025-02-12T22:42:50,656 Created temporary directory: /tmp/pip-build-tracker-3bv1uq5m
2025-02-12T22:42:50,657 Initialized build tracking at /tmp/pip-build-tracker-3bv1uq5m
2025-02-12T22:42:50,657 Created build tracker: /tmp/pip-build-tracker-3bv1uq5m
2025-02-12T22:42:50,657 Entered build tracker: /tmp/pip-build-tracker-3bv1uq5m
2025-02-12T22:42:50,658 Created temporary directory: /tmp/pip-wheel-f5n1eacg
2025-02-12T22:42:50,664 Created temporary directory: /tmp/pip-ephem-wheel-cache-ioprw8oq
2025-02-12T22:42:50,716 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-02-12T22:42:50,719 2 location(s) to search for versions of xi-covutils:
2025-02-12T22:42:50,719 * https://pypi.org/simple/xi-covutils/
2025-02-12T22:42:50,719 * https://www.piwheels.org/simple/xi-covutils/
2025-02-12T22:42:50,719 Fetching project page and analyzing links: https://pypi.org/simple/xi-covutils/
2025-02-12T22:42:50,719 Getting page https://pypi.org/simple/xi-covutils/
2025-02-12T22:42:50,721 Found index url https://pypi.org/simple/
2025-02-12T22:42:50,742 Fetched page https://pypi.org/simple/xi-covutils/ as application/vnd.pypi.simple.v1+json
2025-02-12T22:42:50,745   Found link https://files.pythonhosted.org/packages/a5/58/c5e640c748d1a46295190c37b5031409df7abbe740a0870fc890fd054af1/xi_covutils-0.0.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.0.12
2025-02-12T22:42:50,745   Found link https://files.pythonhosted.org/packages/19/d7/44dc9d9136713a8ccaa45853a10580ac40c226937516bd3b52e5fa53c578/xi_covutils-0.1.9.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.9
2025-02-12T22:42:50,746   Found link https://files.pythonhosted.org/packages/6e/83/e8c26f0bd206b34b102c5c10c2afd77a4ebd39f802f7f658a3fc77177b19/xi_covutils-0.1.10.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.10
2025-02-12T22:42:50,746   Found link https://files.pythonhosted.org/packages/d5/a8/632798910d05b965a58a0db0057cc677f28d3c14bfa49fb65cf95024519e/xi_covutils-0.1.11.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.11
2025-02-12T22:42:50,746   Found link https://files.pythonhosted.org/packages/53/92/e91cb4baecaa4f0d394d64c6331418d5c56d160f4b2fe32d11c1014ea1f8/xi_covutils-0.1.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.12
2025-02-12T22:42:50,747   Found link https://files.pythonhosted.org/packages/66/97/c6cd687af28f65aa7141effdeee0a9310ede57884554e80d5964fac300e0/xi_covutils-0.1.13.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.13
2025-02-12T22:42:50,747   Found link https://files.pythonhosted.org/packages/fe/37/dbabf36b6c68f0435dc33f0c4b39c599d2e9db64f563478fedd1f3153432/xi_covutils-0.1.16.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.16
2025-02-12T22:42:50,747   Found link https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.17
2025-02-12T22:42:50,747   Found link https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.2.0
2025-02-12T22:42:50,748   Found link https://files.pythonhosted.org/packages/49/d7/7ed50ab7d2ce8f78e6ad597f7f6f390920e2ba742e3c896e65549c646cd7/xi_covutils-0.7.0.6.tar.gz (from https://pypi.org/simple/xi-covutils/) (requires-python:>=3.9), version: 0.7.0.6
2025-02-12T22:42:50,748 Fetching project page and analyzing links: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T22:42:50,749 Getting page https://www.piwheels.org/simple/xi-covutils/
2025-02-12T22:42:50,750 Found index url https://www.piwheels.org/simple/
2025-02-12T22:42:50,822 Fetched page https://www.piwheels.org/simple/xi-covutils/ as text/html
2025-02-12T22:42:50,829   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.7.0.6-cp311-cp311-linux_armv6l.whl#sha256=22d2bf603db1c97f7048f4c45d7e3c681c13d010abb75cea7c93ab57b7ec6bc0 (from https://www.piwheels.org/simple/xi-covutils/) (requires-python:>=3.9)
2025-02-12T22:42:50,829   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.7.0.6-cp311-cp311-linux_armv7l.whl#sha256=22d2bf603db1c97f7048f4c45d7e3c681c13d010abb75cea7c93ab57b7ec6bc0 (from https://www.piwheels.org/simple/xi-covutils/) (requires-python:>=3.9)
2025-02-12T22:42:50,830   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.2.0-cp311-cp311-linux_armv6l.whl#sha256=8e70e87f0e1f2cfe6d07591dac2e763ac4da5533ef132690af4bed779e9a556f (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,830   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.2.0-cp311-cp311-linux_armv7l.whl#sha256=8e70e87f0e1f2cfe6d07591dac2e763ac4da5533ef132690af4bed779e9a556f (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,830   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.17-cp311-cp311-linux_armv6l.whl#sha256=9e40bda45d04f885da15de1a6a299e3a243c5628c3831acb56d0b38dcdddee3b (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,831   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.17-cp311-cp311-linux_armv7l.whl#sha256=9e40bda45d04f885da15de1a6a299e3a243c5628c3831acb56d0b38dcdddee3b (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,831   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.16-py3-none-any.whl#sha256=4c6cc1aaff161e932671f543de06703b9e06ca8bc211150a0d20a940a08b852d (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,831   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.13-py3-none-any.whl#sha256=2107d83d3a6b7d6ce29508af89f96d59321109b621d1e0ae053a2465ced8eefc (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,831   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.12-py3-none-any.whl#sha256=2fcafddbfabc2a74de97fe6510cd85b155a2e378ce0be0eda66cf186be948c03 (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,832   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.11-py3-none-any.whl#sha256=389ab1a477d6a64df8aac0c01c91c12b4d199aaeb4b2c6b5c7cfa17eee740a7d (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,832   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.10-py3-none-any.whl#sha256=d6028ff50851bb50f936b5b7a8f0f7697b8414359f1271bbfa8076ee31f77e83 (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,832   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.9-py3-none-any.whl#sha256=08172e44be73172a0bd45eed7e5e0f0d3d9fe33735e62e4a32dbdb6ccbb59ddd (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,832   Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.0.12-py3-none-any.whl#sha256=d3e8951900e17f9e2a9b6fb669905b6c6a8834edf0feaa2ec6dc944eb7531154 (from https://www.piwheels.org/simple/xi-covutils/)
2025-02-12T22:42:50,833 Skipping link: not a file: https://www.piwheels.org/simple/xi-covutils/
2025-02-12T22:42:50,833 Skipping link: not a file: https://pypi.org/simple/xi-covutils/
2025-02-12T22:42:50,859 Given no hashes to check 1 links for project 'xi-covutils': discarding no candidates
2025-02-12T22:42:50,861 Collecting xi-covutils==0.2.0
2025-02-12T22:42:50,865   Created temporary directory: /tmp/pip-unpack-drt0hd8i
2025-02-12T22:42:50,959   Downloading xi_covutils-0.2.0.tar.gz (58 kB)
2025-02-12T22:42:51,069   Added xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-3bv1uq5m'
2025-02-12T22:42:51,071   Running setup.py (path:/tmp/pip-wheel-f5n1eacg/xi-covutils_e161c8270d2d4ea2bb388311a5f911a8/setup.py) egg_info for package xi-covutils
2025-02-12T22:42:51,072   Created temporary directory: /tmp/pip-pip-egg-info-4573d5xl
2025-02-12T22:42:51,072   Preparing metadata (setup.py): started
2025-02-12T22:42:51,073   Running command python setup.py egg_info
2025-02-12T22:42:52,182   running egg_info
2025-02-12T22:42:52,209   creating /tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info
2025-02-12T22:42:52,211   writing /tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/PKG-INFO
2025-02-12T22:42:52,214   writing dependency_links to /tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/dependency_links.txt
2025-02-12T22:42:52,216   writing requirements to /tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/requires.txt
2025-02-12T22:42:52,217   writing top-level names to /tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/top_level.txt
2025-02-12T22:42:52,219   writing manifest file '/tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T22:42:52,335   reading manifest file '/tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T22:42:52,337   reading manifest template 'MANIFEST.in'
2025-02-12T22:42:52,343   writing manifest file '/tmp/pip-pip-egg-info-4573d5xl/xi_covutils.egg-info/SOURCES.txt'
2025-02-12T22:42:52,431   Preparing metadata (setup.py): finished with status 'done'
2025-02-12T22:42:52,436   Source in /tmp/pip-wheel-f5n1eacg/xi-covutils_e161c8270d2d4ea2bb388311a5f911a8 has version 0.2.0, which satisfies requirement xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz
2025-02-12T22:42:52,437   Removed xi-covutils==0.2.0 from https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-3bv1uq5m'
2025-02-12T22:42:52,443 Created temporary directory: /tmp/pip-unpack-g00g8k59
2025-02-12T22:42:52,444 Created temporary directory: /tmp/pip-unpack-zi0mb_tm
2025-02-12T22:42:52,444 Building wheels for collected packages: xi-covutils
2025-02-12T22:42:52,448   Created temporary directory: /tmp/pip-wheel-2zpqzna1
2025-02-12T22:42:52,448   Building wheel for xi-covutils (setup.py): started
2025-02-12T22:42:52,449   Destination directory: /tmp/pip-wheel-2zpqzna1
2025-02-12T22:42:52,449   Running command python setup.py bdist_wheel
2025-02-12T22:42:53,516   running bdist_wheel
2025-02-12T22:42:53,656   running build
2025-02-12T22:42:53,657   running build_py
2025-02-12T22:42:53,687   creating build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,690   copying xi_covutils/__init__.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,692   copying xi_covutils/read_results.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,694   copying xi_covutils/smooth.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,696   copying xi_covutils/pdbmapper.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,698   copying xi_covutils/msa.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,700   copying xi_covutils/distances.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,702   copying xi_covutils/roc.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,704   copying xi_covutils/clustering.py -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,706   running egg_info
2025-02-12T22:42:53,733   writing xi_covutils.egg-info/PKG-INFO
2025-02-12T22:42:53,736   writing dependency_links to xi_covutils.egg-info/dependency_links.txt
2025-02-12T22:42:53,738   writing requirements to xi_covutils.egg-info/requires.txt
2025-02-12T22:42:53,739   writing top-level names to xi_covutils.egg-info/top_level.txt
2025-02-12T22:42:53,770   reading manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T22:42:53,773   reading manifest template 'MANIFEST.in'
2025-02-12T22:42:53,779   writing manifest file 'xi_covutils.egg-info/SOURCES.txt'
2025-02-12T22:42:53,782   copying xi_covutils/aux_func.c -> build/lib.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:53,784   running build_ext
2025-02-12T22:42:54,276   building 'xi_covutils.aux' extension
2025-02-12T22:42:54,277   creating build/temp.linux-armv7l-cpython-39/xi_covutils
2025-02-12T22:42:54,278   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c xi_covutils/aux_func.c -o build/temp.linux-armv7l-cpython-39/xi_covutils/aux_func.o
2025-02-12T22:42:54,682   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/xi_covutils/aux_func.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so
2025-02-12T22:42:54,807   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-02-12T22:42:54,807   !!

2025-02-12T22:42:54,807           ********************************************************************************
2025-02-12T22:42:54,807           Please avoid running ``setup.py`` directly.
2025-02-12T22:42:54,808           Instead, use pypa/build, pypa/installer or other
2025-02-12T22:42:54,808           standards-based tools.

2025-02-12T22:42:54,808           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-02-12T22:42:54,808           ********************************************************************************

2025-02-12T22:42:54,808   !!
2025-02-12T22:42:54,809     self.initialize_options()
2025-02-12T22:42:54,833   installing to build/bdist.linux-armv7l/wheel
2025-02-12T22:42:54,834   running install
2025-02-12T22:42:54,860   running install_lib
2025-02-12T22:42:54,888   creating build/bdist.linux-armv7l/wheel
2025-02-12T22:42:54,890   creating build/bdist.linux-armv7l/wheel/xi_covutils
2025-02-12T22:42:54,891   copying build/lib.linux-armv7l-cpython-39/xi_covutils/__init__.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,893   copying build/lib.linux-armv7l-cpython-39/xi_covutils/read_results.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,895   copying build/lib.linux-armv7l-cpython-39/xi_covutils/aux_func.c -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,897   copying build/lib.linux-armv7l-cpython-39/xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,900   copying build/lib.linux-armv7l-cpython-39/xi_covutils/smooth.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,902   copying build/lib.linux-armv7l-cpython-39/xi_covutils/pdbmapper.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,903   copying build/lib.linux-armv7l-cpython-39/xi_covutils/msa.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,906   copying build/lib.linux-armv7l-cpython-39/xi_covutils/distances.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,909   copying build/lib.linux-armv7l-cpython-39/xi_covutils/roc.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,911   copying build/lib.linux-armv7l-cpython-39/xi_covutils/clustering.py -> build/bdist.linux-armv7l/wheel/./xi_covutils
2025-02-12T22:42:54,912   running install_egg_info
2025-02-12T22:42:54,949   Copying xi_covutils.egg-info to build/bdist.linux-armv7l/wheel/./xi_covutils-0.2.0-py3.9.egg-info
2025-02-12T22:42:54,961   running install_scripts
2025-02-12T22:42:55,033   creating build/bdist.linux-armv7l/wheel/xi_covutils-0.2.0.dist-info/WHEEL
2025-02-12T22:42:55,036   creating '/tmp/pip-wheel-2zpqzna1/xi_covutils-0.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-02-12T22:42:55,040   adding 'xi_covutils/__init__.py'
2025-02-12T22:42:55,043   adding 'xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so'
2025-02-12T22:42:55,045   adding 'xi_covutils/aux_func.c'
2025-02-12T22:42:55,046   adding 'xi_covutils/clustering.py'
2025-02-12T22:42:55,048   adding 'xi_covutils/distances.py'
2025-02-12T22:42:55,058   adding 'xi_covutils/msa.py'
2025-02-12T22:42:55,060   adding 'xi_covutils/pdbmapper.py'
2025-02-12T22:42:55,061   adding 'xi_covutils/read_results.py'
2025-02-12T22:42:55,063   adding 'xi_covutils/roc.py'
2025-02-12T22:42:55,064   adding 'xi_covutils/smooth.py'
2025-02-12T22:42:55,066   adding 'xi_covutils-0.2.0.dist-info/METADATA'
2025-02-12T22:42:55,067   adding 'xi_covutils-0.2.0.dist-info/WHEEL'
2025-02-12T22:42:55,068   adding 'xi_covutils-0.2.0.dist-info/top_level.txt'
2025-02-12T22:42:55,069   adding 'xi_covutils-0.2.0.dist-info/RECORD'
2025-02-12T22:42:55,071   removing build/bdist.linux-armv7l/wheel
2025-02-12T22:42:55,214   Building wheel for xi-covutils (setup.py): finished with status 'done'
2025-02-12T22:42:55,219   Created wheel for xi-covutils: filename=xi_covutils-0.2.0-cp39-cp39-linux_armv7l.whl size=22272 sha256=bcc95b46d3455874676d106fa1ff64959ac64ffb52d4f86b4264d75e4ad23043
2025-02-12T22:42:55,220   Stored in directory: /tmp/pip-ephem-wheel-cache-ioprw8oq/wheels/c6/75/c6/940e8f2c30ef1d43bad62ef3ff52b0e12db8ef1ad62247c219
2025-02-12T22:42:55,234 Successfully built xi-covutils
2025-02-12T22:42:55,239 Removed build tracker: '/tmp/pip-build-tracker-3bv1uq5m'