2025-02-12T22:42:49,517 Disabling truststore because Python version isn't 3.10+ 2025-02-12T22:42:50,102 Created temporary directory: /tmp/pip-build-tracker-e1_vgmdx 2025-02-12T22:42:50,103 Initialized build tracking at /tmp/pip-build-tracker-e1_vgmdx 2025-02-12T22:42:50,103 Created build tracker: /tmp/pip-build-tracker-e1_vgmdx 2025-02-12T22:42:50,103 Entered build tracker: /tmp/pip-build-tracker-e1_vgmdx 2025-02-12T22:42:50,104 Created temporary directory: /tmp/pip-wheel-udjc0zf3 2025-02-12T22:42:50,110 Created temporary directory: /tmp/pip-ephem-wheel-cache-48sv9cal 2025-02-12T22:42:50,170 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-12T22:42:50,173 2 location(s) to search for versions of xi-covutils: 2025-02-12T22:42:50,173 * https://pypi.org/simple/xi-covutils/ 2025-02-12T22:42:50,173 * https://www.piwheels.org/simple/xi-covutils/ 2025-02-12T22:42:50,174 Fetching project page and analyzing links: https://pypi.org/simple/xi-covutils/ 2025-02-12T22:42:50,175 Getting page https://pypi.org/simple/xi-covutils/ 2025-02-12T22:42:50,177 Found index url https://pypi.org/simple/ 2025-02-12T22:42:50,206 Fetched page https://pypi.org/simple/xi-covutils/ as application/vnd.pypi.simple.v1+json 2025-02-12T22:42:50,210 Found link https://files.pythonhosted.org/packages/a5/58/c5e640c748d1a46295190c37b5031409df7abbe740a0870fc890fd054af1/xi_covutils-0.0.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.0.12 2025-02-12T22:42:50,210 Found link https://files.pythonhosted.org/packages/19/d7/44dc9d9136713a8ccaa45853a10580ac40c226937516bd3b52e5fa53c578/xi_covutils-0.1.9.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.9 2025-02-12T22:42:50,211 Found link https://files.pythonhosted.org/packages/6e/83/e8c26f0bd206b34b102c5c10c2afd77a4ebd39f802f7f658a3fc77177b19/xi_covutils-0.1.10.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.10 2025-02-12T22:42:50,211 Found link https://files.pythonhosted.org/packages/d5/a8/632798910d05b965a58a0db0057cc677f28d3c14bfa49fb65cf95024519e/xi_covutils-0.1.11.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.11 2025-02-12T22:42:50,212 Found link https://files.pythonhosted.org/packages/53/92/e91cb4baecaa4f0d394d64c6331418d5c56d160f4b2fe32d11c1014ea1f8/xi_covutils-0.1.12.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.12 2025-02-12T22:42:50,212 Found link https://files.pythonhosted.org/packages/66/97/c6cd687af28f65aa7141effdeee0a9310ede57884554e80d5964fac300e0/xi_covutils-0.1.13.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.13 2025-02-12T22:42:50,212 Found link https://files.pythonhosted.org/packages/fe/37/dbabf36b6c68f0435dc33f0c4b39c599d2e9db64f563478fedd1f3153432/xi_covutils-0.1.16.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.16 2025-02-12T22:42:50,213 Found link https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.1.17 2025-02-12T22:42:50,213 Found link https://files.pythonhosted.org/packages/99/ec/e295e8300d31f2bed5b78a3931f0826f60e01484c1bf02acebe7150bda0d/xi_covutils-0.2.0.tar.gz (from https://pypi.org/simple/xi-covutils/), version: 0.2.0 2025-02-12T22:42:50,214 Found link https://files.pythonhosted.org/packages/49/d7/7ed50ab7d2ce8f78e6ad597f7f6f390920e2ba742e3c896e65549c646cd7/xi_covutils-0.7.0.6.tar.gz (from https://pypi.org/simple/xi-covutils/) (requires-python:>=3.9), version: 0.7.0.6 2025-02-12T22:42:50,215 Fetching project page and analyzing links: https://www.piwheels.org/simple/xi-covutils/ 2025-02-12T22:42:50,215 Getting page https://www.piwheels.org/simple/xi-covutils/ 2025-02-12T22:42:50,216 Found index url https://www.piwheels.org/simple/ 2025-02-12T22:42:50,280 Fetched page https://www.piwheels.org/simple/xi-covutils/ as text/html 2025-02-12T22:42:50,285 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.7.0.6-cp311-cp311-linux_armv6l.whl#sha256=22d2bf603db1c97f7048f4c45d7e3c681c13d010abb75cea7c93ab57b7ec6bc0 (from https://www.piwheels.org/simple/xi-covutils/) (requires-python:>=3.9) 2025-02-12T22:42:50,285 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.7.0.6-cp311-cp311-linux_armv7l.whl#sha256=22d2bf603db1c97f7048f4c45d7e3c681c13d010abb75cea7c93ab57b7ec6bc0 (from https://www.piwheels.org/simple/xi-covutils/) (requires-python:>=3.9) 2025-02-12T22:42:50,285 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.2.0-cp311-cp311-linux_armv6l.whl#sha256=8e70e87f0e1f2cfe6d07591dac2e763ac4da5533ef132690af4bed779e9a556f (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,286 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.2.0-cp311-cp311-linux_armv7l.whl#sha256=8e70e87f0e1f2cfe6d07591dac2e763ac4da5533ef132690af4bed779e9a556f (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,286 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.17-cp311-cp311-linux_armv6l.whl#sha256=9e40bda45d04f885da15de1a6a299e3a243c5628c3831acb56d0b38dcdddee3b (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,286 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.17-cp311-cp311-linux_armv7l.whl#sha256=9e40bda45d04f885da15de1a6a299e3a243c5628c3831acb56d0b38dcdddee3b (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,286 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.16-py3-none-any.whl#sha256=4c6cc1aaff161e932671f543de06703b9e06ca8bc211150a0d20a940a08b852d (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,286 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.13-py3-none-any.whl#sha256=2107d83d3a6b7d6ce29508af89f96d59321109b621d1e0ae053a2465ced8eefc (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,287 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.12-py3-none-any.whl#sha256=2fcafddbfabc2a74de97fe6510cd85b155a2e378ce0be0eda66cf186be948c03 (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,287 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.11-py3-none-any.whl#sha256=389ab1a477d6a64df8aac0c01c91c12b4d199aaeb4b2c6b5c7cfa17eee740a7d (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,287 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.10-py3-none-any.whl#sha256=d6028ff50851bb50f936b5b7a8f0f7697b8414359f1271bbfa8076ee31f77e83 (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,287 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.1.9-py3-none-any.whl#sha256=08172e44be73172a0bd45eed7e5e0f0d3d9fe33735e62e4a32dbdb6ccbb59ddd (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,287 Skipping link: No binaries permitted for xi-covutils: https://www.piwheels.org/simple/xi-covutils/xi_covutils-0.0.12-py3-none-any.whl#sha256=d3e8951900e17f9e2a9b6fb669905b6c6a8834edf0feaa2ec6dc944eb7531154 (from https://www.piwheels.org/simple/xi-covutils/) 2025-02-12T22:42:50,288 Skipping link: not a file: https://www.piwheels.org/simple/xi-covutils/ 2025-02-12T22:42:50,288 Skipping link: not a file: https://pypi.org/simple/xi-covutils/ 2025-02-12T22:42:50,305 Given no hashes to check 1 links for project 'xi-covutils': discarding no candidates 2025-02-12T22:42:50,307 Collecting xi-covutils==0.1.17 2025-02-12T22:42:50,310 Created temporary directory: /tmp/pip-unpack-2g1ai5vg 2025-02-12T22:42:50,404 Downloading xi_covutils-0.1.17.tar.gz (58 kB) 2025-02-12T22:42:50,519 Added xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz to build tracker '/tmp/pip-build-tracker-e1_vgmdx' 2025-02-12T22:42:50,521 Running setup.py (path:/tmp/pip-wheel-udjc0zf3/xi-covutils_7925ef9415a14a9192938a0d3fe92826/setup.py) egg_info for package xi-covutils 2025-02-12T22:42:50,522 Created temporary directory: /tmp/pip-pip-egg-info-d5qqtzmb 2025-02-12T22:42:50,522 Preparing metadata (setup.py): started 2025-02-12T22:42:50,523 Running command python setup.py egg_info 2025-02-12T22:42:51,658 running egg_info 2025-02-12T22:42:51,688 creating /tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info 2025-02-12T22:42:51,690 writing /tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/PKG-INFO 2025-02-12T22:42:51,693 writing dependency_links to /tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/dependency_links.txt 2025-02-12T22:42:51,695 writing requirements to /tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/requires.txt 2025-02-12T22:42:51,696 writing top-level names to /tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/top_level.txt 2025-02-12T22:42:51,698 writing manifest file '/tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/SOURCES.txt' 2025-02-12T22:42:51,819 reading manifest file '/tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/SOURCES.txt' 2025-02-12T22:42:51,821 reading manifest template 'MANIFEST.in' 2025-02-12T22:42:51,826 writing manifest file '/tmp/pip-pip-egg-info-d5qqtzmb/xi_covutils.egg-info/SOURCES.txt' 2025-02-12T22:42:51,913 Preparing metadata (setup.py): finished with status 'done' 2025-02-12T22:42:51,918 Source in /tmp/pip-wheel-udjc0zf3/xi-covutils_7925ef9415a14a9192938a0d3fe92826 has version 0.1.17, which satisfies requirement xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz 2025-02-12T22:42:51,919 Removed xi-covutils==0.1.17 from https://files.pythonhosted.org/packages/a3/73/7c3c2b5026d845d93cffc78c2dc131c6404d8e4caba51b4470457f1bc83d/xi_covutils-0.1.17.tar.gz from build tracker '/tmp/pip-build-tracker-e1_vgmdx' 2025-02-12T22:42:51,925 Created temporary directory: /tmp/pip-unpack-z4qlk0gi 2025-02-12T22:42:51,926 Created temporary directory: /tmp/pip-unpack-2wm6aiqx 2025-02-12T22:42:51,926 Building wheels for collected packages: xi-covutils 2025-02-12T22:42:51,930 Created temporary directory: /tmp/pip-wheel-s684gua7 2025-02-12T22:42:51,931 Building wheel for xi-covutils (setup.py): started 2025-02-12T22:42:51,932 Destination directory: /tmp/pip-wheel-s684gua7 2025-02-12T22:42:51,932 Running command python setup.py bdist_wheel 2025-02-12T22:42:53,003 running bdist_wheel 2025-02-12T22:42:53,154 running build 2025-02-12T22:42:53,155 running build_py 2025-02-12T22:42:53,188 creating build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,191 copying xi_covutils/msa.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,194 copying xi_covutils/__init__.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,196 copying xi_covutils/read_results.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,199 copying xi_covutils/roc.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,202 copying xi_covutils/distances.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,204 copying xi_covutils/smooth.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,207 copying xi_covutils/pdbmapper.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,209 copying xi_covutils/clustering.py -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,211 running egg_info 2025-02-12T22:42:53,242 writing xi_covutils.egg-info/PKG-INFO 2025-02-12T22:42:53,246 writing dependency_links to xi_covutils.egg-info/dependency_links.txt 2025-02-12T22:42:53,248 writing requirements to xi_covutils.egg-info/requires.txt 2025-02-12T22:42:53,249 writing top-level names to xi_covutils.egg-info/top_level.txt 2025-02-12T22:42:53,300 reading manifest file 'xi_covutils.egg-info/SOURCES.txt' 2025-02-12T22:42:53,304 reading manifest template 'MANIFEST.in' 2025-02-12T22:42:53,310 writing manifest file 'xi_covutils.egg-info/SOURCES.txt' 2025-02-12T22:42:53,313 copying xi_covutils/aux_func.c -> build/lib.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,316 running build_ext 2025-02-12T22:42:53,323 building 'xi_covutils.aux' extension 2025-02-12T22:42:53,324 creating build/temp.linux-armv7l-cpython-39/xi_covutils 2025-02-12T22:42:53,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c xi_covutils/aux_func.c -o build/temp.linux-armv7l-cpython-39/xi_covutils/aux_func.o 2025-02-12T22:42:53,736 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/xi_covutils/aux_func.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so 2025-02-12T22:42:53,888 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-12T22:42:53,888 !! 2025-02-12T22:42:53,889 ******************************************************************************** 2025-02-12T22:42:53,889 Please avoid running ``setup.py`` directly. 2025-02-12T22:42:53,889 Instead, use pypa/build, pypa/installer or other 2025-02-12T22:42:53,889 standards-based tools. 2025-02-12T22:42:53,889 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-12T22:42:53,890 ******************************************************************************** 2025-02-12T22:42:53,890 !! 2025-02-12T22:42:53,890 self.initialize_options() 2025-02-12T22:42:53,917 installing to build/bdist.linux-armv7l/wheel 2025-02-12T22:42:53,917 running install 2025-02-12T22:42:53,944 running install_lib 2025-02-12T22:42:53,972 creating build/bdist.linux-armv7l/wheel 2025-02-12T22:42:53,975 creating build/bdist.linux-armv7l/wheel/xi_covutils 2025-02-12T22:42:53,976 copying build/lib.linux-armv7l-cpython-39/xi_covutils/msa.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,978 copying build/lib.linux-armv7l-cpython-39/xi_covutils/__init__.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,980 copying build/lib.linux-armv7l-cpython-39/xi_covutils/read_results.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,982 copying build/lib.linux-armv7l-cpython-39/xi_covutils/roc.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,984 copying build/lib.linux-armv7l-cpython-39/xi_covutils/aux_func.c -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,986 copying build/lib.linux-armv7l-cpython-39/xi_covutils/distances.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,988 copying build/lib.linux-armv7l-cpython-39/xi_covutils/smooth.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,990 copying build/lib.linux-armv7l-cpython-39/xi_covutils/pdbmapper.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,991 copying build/lib.linux-armv7l-cpython-39/xi_covutils/clustering.py -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,993 copying build/lib.linux-armv7l-cpython-39/xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xi_covutils 2025-02-12T22:42:53,995 running install_egg_info 2025-02-12T22:42:54,031 Copying xi_covutils.egg-info to build/bdist.linux-armv7l/wheel/./xi_covutils-0.1.17-py3.9.egg-info 2025-02-12T22:42:54,041 running install_scripts 2025-02-12T22:42:54,096 creating build/bdist.linux-armv7l/wheel/xi_covutils-0.1.17.dist-info/WHEEL 2025-02-12T22:42:54,099 creating '/tmp/pip-wheel-s684gua7/xi_covutils-0.1.17-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-12T22:42:54,101 adding 'xi_covutils/__init__.py' 2025-02-12T22:42:54,104 adding 'xi_covutils/aux.cpython-39-arm-linux-gnueabihf.so' 2025-02-12T22:42:54,106 adding 'xi_covutils/aux_func.c' 2025-02-12T22:42:54,107 adding 'xi_covutils/clustering.py' 2025-02-12T22:42:54,109 adding 'xi_covutils/distances.py' 2025-02-12T22:42:54,111 adding 'xi_covutils/msa.py' 2025-02-12T22:42:54,112 adding 'xi_covutils/pdbmapper.py' 2025-02-12T22:42:54,114 adding 'xi_covutils/read_results.py' 2025-02-12T22:42:54,115 adding 'xi_covutils/roc.py' 2025-02-12T22:42:54,117 adding 'xi_covutils/smooth.py' 2025-02-12T22:42:54,119 adding 'xi_covutils-0.1.17.dist-info/METADATA' 2025-02-12T22:42:54,120 adding 'xi_covutils-0.1.17.dist-info/WHEEL' 2025-02-12T22:42:54,121 adding 'xi_covutils-0.1.17.dist-info/top_level.txt' 2025-02-12T22:42:54,122 adding 'xi_covutils-0.1.17.dist-info/RECORD' 2025-02-12T22:42:54,123 removing build/bdist.linux-armv7l/wheel 2025-02-12T22:42:54,222 Building wheel for xi-covutils (setup.py): finished with status 'done' 2025-02-12T22:42:54,224 Created wheel for xi-covutils: filename=xi_covutils-0.1.17-cp39-cp39-linux_armv7l.whl size=22327 sha256=0e21c54ac57cf0f83b87e632a104bf99ec49c22651f1713a9a76e2000efa6008 2025-02-12T22:42:54,225 Stored in directory: /tmp/pip-ephem-wheel-cache-48sv9cal/wheels/32/bc/aa/0776b949eaf105a35e58dc05ac9e9a61a2f4e0031155610836 2025-02-12T22:42:54,235 Successfully built xi-covutils 2025-02-12T22:42:54,239 Removed build tracker: '/tmp/pip-build-tracker-e1_vgmdx'