2025-02-23T06:01:45,554 Created temporary directory: /tmp/pip-build-tracker-ueupg0cr 2025-02-23T06:01:45,556 Initialized build tracking at /tmp/pip-build-tracker-ueupg0cr 2025-02-23T06:01:45,556 Created build tracker: /tmp/pip-build-tracker-ueupg0cr 2025-02-23T06:01:45,556 Entered build tracker: /tmp/pip-build-tracker-ueupg0cr 2025-02-23T06:01:45,557 Created temporary directory: /tmp/pip-wheel-oa64tsbq 2025-02-23T06:01:45,561 Created temporary directory: /tmp/pip-ephem-wheel-cache-rlewqe9l 2025-02-23T06:01:45,605 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-23T06:01:45,608 2 location(s) to search for versions of soapy-st: 2025-02-23T06:01:45,608 * https://pypi.org/simple/soapy-st/ 2025-02-23T06:01:45,608 * https://www.piwheels.org/simple/soapy-st/ 2025-02-23T06:01:45,609 Fetching project page and analyzing links: https://pypi.org/simple/soapy-st/ 2025-02-23T06:01:45,609 Getting page https://pypi.org/simple/soapy-st/ 2025-02-23T06:01:45,611 Found index url https://pypi.org/simple/ 2025-02-23T06:01:45,830 Fetched page https://pypi.org/simple/soapy-st/ as application/vnd.pypi.simple.v1+json 2025-02-23T06:01:45,836 Found link https://files.pythonhosted.org/packages/26/ef/07d2cc6a416a2962d02658155c1a0ba11bfc0f294a28701a880888aadebf/SOAPy-st-0.1.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.0 2025-02-23T06:01:45,837 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a4/47/c919aacc1a29a1509890a939821621d8bfea16fc15efdd1b845830b3c0ea/SOAPy_st-0.1.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,838 Found link https://files.pythonhosted.org/packages/6a/c4/2aae67cff1af7affce1ecdf80fa2f0aeca0cc34c34d524f690d80c79662e/SOAPy-st-0.1.2.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.2 2025-02-23T06:01:45,838 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/f5/cc/585b624914621cbff914d1d73e94a392ad0631a17a55ef8b9025ff9d7bde/SOAPy_st-0.1.2-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,839 Found link https://files.pythonhosted.org/packages/14/bf/41fa18c6356fa85d7e53bc8f384c6169a613ff8074cd6fe26d9734bdb258/SOAPy-st-0.1.3.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.3 2025-02-23T06:01:45,840 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/01/76/0370ef54a91fc2dacec2581cdbe1cecef35f9880afd556ba974b92726b02/SOAPy_st-0.1.3-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,841 Found link https://files.pythonhosted.org/packages/44/90/046401a8b275c9ccefb48083c6b59ae71ea2146fac4f85ddf38e92dcbc48/SOAPy-st-0.1.4.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.4 2025-02-23T06:01:45,841 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a7/3a/827460d431b0d1718673606675e4bf23b17eaae4b26be66803c459a93228/SOAPy_st-0.1.4-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,842 Found link https://files.pythonhosted.org/packages/36/8c/aad31bbb5ad56da395c7761983c7425dd0fb7556d10d3d9b9491267717b2/SOAPy-st-0.1.5.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.5 2025-02-23T06:01:45,843 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/c9/d8/42a67874b6dae28b6fb7695a3ba9d8e876a2b979836c9ce5bc11542b7ce6/SOAPy_st-0.1.5-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,844 Found link https://files.pythonhosted.org/packages/b1/bc/b92228426416290c0fbf49acfe19da61a1d519170ba73f37a4d40abec2e0/SOAPy-st-0.1.6.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.6 2025-02-23T06:01:45,845 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/3b/75/d09025b4ebab5c67f5099748128897ac2f03fe137394ee68c266e271ddb5/SOAPy_st-0.1.6-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,845 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/1b/e2/988a827aec3aaec819c8ae2818c0c61dece530373490005a31f390559642/SOAPy_st-0.1.7-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,846 Found link https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.7 2025-02-23T06:01:45,847 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/2f/c1/0b0a8d7b79037c1676372acc5ce06a4b1dcc042b9626d3e5aca72486b21a/SOAPy_st-0.1.8-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,848 Found link https://files.pythonhosted.org/packages/45/7c/3466e5548b1b78fc48bc95a8c6494161eed6829b8b6c383290f08b8e7928/SOAPy_st-0.1.8.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.8 2025-02-23T06:01:45,848 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/ab/9a/91323cc4ff8c2275eaef296f45e04b1b1ac767861e18b6f9c105654906e1/SOAPy_st-0.1.9-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,849 Found link https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.9 2025-02-23T06:01:45,850 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/6c/9e/d1798f4aad6afc2259a26d2f172623a61b46188acc5dcb169fd45bbef38b/SOAPy_st-1.0.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:45,851 Found link https://files.pythonhosted.org/packages/be/93/336dabb8892d26d513222c78fa586c059fa1f47aa3a352a216bcd663462a/SOAPy_st-1.0.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 1.0.0 2025-02-23T06:01:45,851 Fetching project page and analyzing links: https://www.piwheels.org/simple/soapy-st/ 2025-02-23T06:01:45,852 Getting page https://www.piwheels.org/simple/soapy-st/ 2025-02-23T06:01:45,853 Found index url https://www.piwheels.org/simple/ 2025-02-23T06:01:46,030 Fetched page https://www.piwheels.org/simple/soapy-st/ as text/html 2025-02-23T06:01:46,032 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.9-py3-none-any.whl#sha256=7b8969129e28a0bf2c558b21fb2130974232e37ed310398e5e73d9b691398e18 (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:46,033 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.8-py3-none-any.whl#sha256=c1fb983304577e31d63e54f65b05881f4550388b457dfec56875ecc4ca45e3ae (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:46,033 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.7-py3-none-any.whl#sha256=47ef0b65f7e6470511a5ef5fd5fe2a052d619946cfd5235ced410e7a90a41e1e (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-23T06:01:46,034 Skipping link: not a file: https://www.piwheels.org/simple/soapy-st/ 2025-02-23T06:01:46,035 Skipping link: not a file: https://pypi.org/simple/soapy-st/ 2025-02-23T06:01:46,055 Given no hashes to check 1 links for project 'soapy-st': discarding no candidates 2025-02-23T06:01:46,057 Collecting soapy-st==1.0.0 2025-02-23T06:01:46,059 Created temporary directory: /tmp/pip-unpack-00_dtvay 2025-02-23T06:01:46,280 Downloading SOAPy_st-1.0.0.tar.gz (218 kB) 2025-02-23T06:01:46,522 Added soapy-st==1.0.0 from https://files.pythonhosted.org/packages/be/93/336dabb8892d26d513222c78fa586c059fa1f47aa3a352a216bcd663462a/SOAPy_st-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ueupg0cr' 2025-02-23T06:01:46,524 Running setup.py (path:/tmp/pip-wheel-oa64tsbq/soapy-st_e27a5a69e022499499f9503e95ddf833/setup.py) egg_info for package soapy-st 2025-02-23T06:01:46,525 Created temporary directory: /tmp/pip-pip-egg-info-oe6xizg9 2025-02-23T06:01:46,525 Preparing metadata (setup.py): started 2025-02-23T06:01:46,527 Running command python setup.py egg_info 2025-02-23T06:01:47,085 /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-oa64tsbq/soapy-st_e27a5a69e022499499f9503e95ddf833/Readme.md' cannot be found 2025-02-23T06:01:47,085 return '\n'.join( 2025-02-23T06:01:47,658 running egg_info 2025-02-23T06:01:47,684 creating /tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info 2025-02-23T06:01:47,685 writing /tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/PKG-INFO 2025-02-23T06:01:47,689 writing dependency_links to /tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/dependency_links.txt 2025-02-23T06:01:47,691 writing requirements to /tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/requires.txt 2025-02-23T06:01:47,692 writing top-level names to /tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/top_level.txt 2025-02-23T06:01:47,693 writing manifest file '/tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/SOURCES.txt' 2025-02-23T06:01:47,796 reading manifest file '/tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/SOURCES.txt' 2025-02-23T06:01:47,798 reading manifest template 'MANIFEST.in' 2025-02-23T06:01:47,799 adding license file 'LICENSE.md' 2025-02-23T06:01:47,803 writing manifest file '/tmp/pip-pip-egg-info-oe6xizg9/SOAPy_st.egg-info/SOURCES.txt' 2025-02-23T06:01:47,912 Preparing metadata (setup.py): finished with status 'done' 2025-02-23T06:01:47,917 Source in /tmp/pip-wheel-oa64tsbq/soapy-st_e27a5a69e022499499f9503e95ddf833 has version 1.0.0, which satisfies requirement soapy-st==1.0.0 from https://files.pythonhosted.org/packages/be/93/336dabb8892d26d513222c78fa586c059fa1f47aa3a352a216bcd663462a/SOAPy_st-1.0.0.tar.gz 2025-02-23T06:01:47,917 Removed soapy-st==1.0.0 from https://files.pythonhosted.org/packages/be/93/336dabb8892d26d513222c78fa586c059fa1f47aa3a352a216bcd663462a/SOAPy_st-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ueupg0cr' 2025-02-23T06:01:47,930 Created temporary directory: /tmp/pip-unpack-9lygvjtb 2025-02-23T06:01:47,931 Created temporary directory: /tmp/pip-unpack-4icn61yl 2025-02-23T06:01:47,931 Building wheels for collected packages: soapy-st 2025-02-23T06:01:47,935 Created temporary directory: /tmp/pip-wheel-8qblrxmw 2025-02-23T06:01:47,936 Building wheel for soapy-st (setup.py): started 2025-02-23T06:01:47,937 Destination directory: /tmp/pip-wheel-8qblrxmw 2025-02-23T06:01:47,938 Running command python setup.py bdist_wheel 2025-02-23T06:01:48,466 /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-oa64tsbq/soapy-st_e27a5a69e022499499f9503e95ddf833/Readme.md' cannot be found 2025-02-23T06:01:48,467 return '\n'.join( 2025-02-23T06:01:49,025 running bdist_wheel 2025-02-23T06:01:49,158 running build 2025-02-23T06:01:49,159 running build_py 2025-02-23T06:01:49,189 creating build/lib/SOAPy_st 2025-02-23T06:01:49,191 copying SOAPy_st/_compat.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,193 copying SOAPy_st/_metadata.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,195 copying SOAPy_st/_docs.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,196 copying SOAPy_st/utils.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,200 copying SOAPy_st/__init__.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,202 copying SOAPy_st/_settings.py -> build/lib/SOAPy_st 2025-02-23T06:01:49,205 creating build/lib/SOAPy_st/tl 2025-02-23T06:01:49,207 copying SOAPy_st/tl/_domain.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,210 copying SOAPy_st/tl/_tendency.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,212 copying SOAPy_st/tl/_interaction.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,215 copying SOAPy_st/tl/_ccc.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,218 copying SOAPy_st/tl/_mask.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,220 copying SOAPy_st/tl/_var_genes.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,222 copying SOAPy_st/tl/utils.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,224 copying SOAPy_st/tl/__init__.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,226 copying SOAPy_st/tl/_tensor.py -> build/lib/SOAPy_st/tl 2025-02-23T06:01:49,229 creating build/lib/SOAPy_st/pp 2025-02-23T06:01:49,230 copying SOAPy_st/pp/utils.py -> build/lib/SOAPy_st/pp 2025-02-23T06:01:49,232 copying SOAPy_st/pp/all2adata.py -> build/lib/SOAPy_st/pp 2025-02-23T06:01:49,235 copying SOAPy_st/pp/__init__.py -> build/lib/SOAPy_st/pp 2025-02-23T06:01:49,236 copying SOAPy_st/pp/build_network.py -> build/lib/SOAPy_st/pp 2025-02-23T06:01:49,239 creating build/lib/SOAPy_st/pl 2025-02-23T06:01:49,240 copying SOAPy_st/pl/_heatmap.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,243 copying SOAPy_st/pl/_show.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,246 copying SOAPy_st/pl/_chord.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,248 copying SOAPy_st/pl/_niche.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,251 copying SOAPy_st/pl/_neighborhood.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,254 copying SOAPy_st/pl/_tendency.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,256 copying SOAPy_st/pl/_ccc.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,259 copying SOAPy_st/pl/utils.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,261 copying SOAPy_st/pl/__init__.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,263 copying SOAPy_st/pl/_color.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,265 copying SOAPy_st/pl/_tensor.py -> build/lib/SOAPy_st/pl 2025-02-23T06:01:49,268 creating build/lib/SOAPy_st/tl/other_package_without_pip 2025-02-23T06:01:49,269 copying SOAPy_st/tl/other_package_without_pip/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip 2025-02-23T06:01:49,271 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-23T06:01:49,273 copying SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-23T06:01:49,275 creating build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,277 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,278 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,285 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,288 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,290 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,293 creating build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,294 copying SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,296 copying SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,299 copying SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,302 copying SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,303 copying SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,306 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,308 copying SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,310 copying SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,312 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,313 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,315 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,317 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,319 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,321 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,323 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,325 running egg_info 2025-02-23T06:01:49,356 writing SOAPy_st.egg-info/PKG-INFO 2025-02-23T06:01:49,359 writing dependency_links to SOAPy_st.egg-info/dependency_links.txt 2025-02-23T06:01:49,362 writing requirements to SOAPy_st.egg-info/requires.txt 2025-02-23T06:01:49,363 writing top-level names to SOAPy_st.egg-info/top_level.txt 2025-02-23T06:01:49,403 reading manifest file 'SOAPy_st.egg-info/SOURCES.txt' 2025-02-23T06:01:49,408 reading manifest template 'MANIFEST.in' 2025-02-23T06:01:49,410 adding license file 'LICENSE.md' 2025-02-23T06:01:49,415 writing manifest file 'SOAPy_st.egg-info/SOURCES.txt' 2025-02-23T06:01:49,418 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SOAPy_st.tl.datasets' is absent from the `packages` configuration. 2025-02-23T06:01:49,418 !! 2025-02-23T06:01:49,419 ******************************************************************************** 2025-02-23T06:01:49,420 ############################ 2025-02-23T06:01:49,420 # Package would be ignored # 2025-02-23T06:01:49,421 ############################ 2025-02-23T06:01:49,421 Python recognizes 'SOAPy_st.tl.datasets' as an importable package[^1], 2025-02-23T06:01:49,422 but it is absent from setuptools' `packages` configuration. 2025-02-23T06:01:49,423 This leads to an ambiguous overall configuration. If you want to distribute this 2025-02-23T06:01:49,424 package, please make sure that 'SOAPy_st.tl.datasets' is explicitly added 2025-02-23T06:01:49,424 to the `packages` configuration field. 2025-02-23T06:01:49,425 Alternatively, you can also rely on setuptools' discovery methods 2025-02-23T06:01:49,426 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-02-23T06:01:49,426 instead of `find_packages(...)`/`find:`). 2025-02-23T06:01:49,428 You can read more about "package discovery" on setuptools documentation page: 2025-02-23T06:01:49,429 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-02-23T06:01:49,430 If you don't want 'SOAPy_st.tl.datasets' to be distributed and are 2025-02-23T06:01:49,432 already explicitly excluding 'SOAPy_st.tl.datasets' via 2025-02-23T06:01:49,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-02-23T06:01:49,436 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-02-23T06:01:49,437 combination with a more fine grained `package-data` configuration. 2025-02-23T06:01:49,438 You can read more about "package data files" on setuptools documentation page: 2025-02-23T06:01:49,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-02-23T06:01:49,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-02-23T06:01:49,440 even if it does not contain any `.py` files. 2025-02-23T06:01:49,441 On the other hand, currently there is no concept of package data 2025-02-23T06:01:49,443 directory, all directories are treated like packages. 2025-02-23T06:01:49,447 ******************************************************************************** 2025-02-23T06:01:49,448 !! 2025-02-23T06:01:49,448 check.warn(importable) 2025-02-23T06:01:49,448 creating build/lib/SOAPy_st/tl/datasets 2025-02-23T06:01:49,449 copying SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets 2025-02-23T06:01:49,449 copying SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets 2025-02-23T06:01:49,480 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-23T06:01:49,480 !! 2025-02-23T06:01:49,481 ******************************************************************************** 2025-02-23T06:01:49,482 Please avoid running ``setup.py`` directly. 2025-02-23T06:01:49,482 Instead, use pypa/build, pypa/installer or other 2025-02-23T06:01:49,483 standards-based tools. 2025-02-23T06:01:49,484 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-23T06:01:49,484 ******************************************************************************** 2025-02-23T06:01:49,485 !! 2025-02-23T06:01:49,486 self.initialize_options() 2025-02-23T06:01:49,508 installing to build/bdist.linux-armv7l/wheel 2025-02-23T06:01:49,509 running install 2025-02-23T06:01:49,533 running install_lib 2025-02-23T06:01:49,561 creating build/bdist.linux-armv7l/wheel 2025-02-23T06:01:49,563 creating build/bdist.linux-armv7l/wheel/SOAPy_st 2025-02-23T06:01:49,565 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl 2025-02-23T06:01:49,566 copying build/lib/SOAPy_st/tl/_domain.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,569 copying build/lib/SOAPy_st/tl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,572 copying build/lib/SOAPy_st/tl/_interaction.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,575 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/datasets 2025-02-23T06:01:49,577 copying build/lib/SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets 2025-02-23T06:01:49,586 copying build/lib/SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets 2025-02-23T06:01:49,595 copying build/lib/SOAPy_st/tl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,599 copying build/lib/SOAPy_st/tl/_mask.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,601 copying build/lib/SOAPy_st/tl/_var_genes.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,604 copying build/lib/SOAPy_st/tl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,606 copying build/lib/SOAPy_st/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,609 copying build/lib/SOAPy_st/tl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-23T06:01:49,612 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip 2025-02-23T06:01:49,614 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-23T06:01:49,616 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,618 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,621 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-23T06:01:49,623 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit 2025-02-23T06:01:49,625 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,627 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,629 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,631 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,634 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,636 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,638 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-23T06:01:49,640 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,642 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,644 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,647 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,649 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,652 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-23T06:01:49,655 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,657 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,659 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,662 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,665 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,667 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-23T06:01:49,670 copying build/lib/SOAPy_st/tl/other_package_without_pip/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip 2025-02-23T06:01:49,672 creating build/bdist.linux-armv7l/wheel/SOAPy_st/pp 2025-02-23T06:01:49,674 copying build/lib/SOAPy_st/pp/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-23T06:01:49,676 copying build/lib/SOAPy_st/pp/all2adata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-23T06:01:49,679 copying build/lib/SOAPy_st/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-23T06:01:49,681 copying build/lib/SOAPy_st/pp/build_network.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-23T06:01:49,683 copying build/lib/SOAPy_st/_compat.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,686 creating build/bdist.linux-armv7l/wheel/SOAPy_st/pl 2025-02-23T06:01:49,687 copying build/lib/SOAPy_st/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,691 copying build/lib/SOAPy_st/pl/_show.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,694 copying build/lib/SOAPy_st/pl/_chord.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,696 copying build/lib/SOAPy_st/pl/_niche.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,699 copying build/lib/SOAPy_st/pl/_neighborhood.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,701 copying build/lib/SOAPy_st/pl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,704 copying build/lib/SOAPy_st/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,707 copying build/lib/SOAPy_st/pl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,710 copying build/lib/SOAPy_st/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,712 copying build/lib/SOAPy_st/pl/_color.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,714 copying build/lib/SOAPy_st/pl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-23T06:01:49,717 copying build/lib/SOAPy_st/_metadata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,718 copying build/lib/SOAPy_st/_docs.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,720 copying build/lib/SOAPy_st/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,723 copying build/lib/SOAPy_st/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,725 copying build/lib/SOAPy_st/_settings.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-23T06:01:49,727 running install_egg_info 2025-02-23T06:01:49,760 Copying SOAPy_st.egg-info to build/bdist.linux-armv7l/wheel/./SOAPy_st-1.0.0-py3.11.egg-info 2025-02-23T06:01:49,770 running install_scripts 2025-02-23T06:01:49,797 creating build/bdist.linux-armv7l/wheel/SOAPy_st-1.0.0.dist-info/WHEEL 2025-02-23T06:01:49,800 creating '/tmp/pip-wheel-8qblrxmw/SOAPy_st-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-23T06:01:49,803 adding 'SOAPy_st/__init__.py' 2025-02-23T06:01:49,804 adding 'SOAPy_st/_compat.py' 2025-02-23T06:01:49,806 adding 'SOAPy_st/_docs.py' 2025-02-23T06:01:49,807 adding 'SOAPy_st/_metadata.py' 2025-02-23T06:01:49,810 adding 'SOAPy_st/_settings.py' 2025-02-23T06:01:49,812 adding 'SOAPy_st/utils.py' 2025-02-23T06:01:49,814 adding 'SOAPy_st/pl/__init__.py' 2025-02-23T06:01:49,818 adding 'SOAPy_st/pl/_ccc.py' 2025-02-23T06:01:49,820 adding 'SOAPy_st/pl/_chord.py' 2025-02-23T06:01:49,822 adding 'SOAPy_st/pl/_color.py' 2025-02-23T06:01:49,824 adding 'SOAPy_st/pl/_heatmap.py' 2025-02-23T06:01:49,826 adding 'SOAPy_st/pl/_neighborhood.py' 2025-02-23T06:01:49,828 adding 'SOAPy_st/pl/_niche.py' 2025-02-23T06:01:49,831 adding 'SOAPy_st/pl/_show.py' 2025-02-23T06:01:49,832 adding 'SOAPy_st/pl/_tendency.py' 2025-02-23T06:01:49,834 adding 'SOAPy_st/pl/_tensor.py' 2025-02-23T06:01:49,836 adding 'SOAPy_st/pl/utils.py' 2025-02-23T06:01:49,837 adding 'SOAPy_st/pp/__init__.py' 2025-02-23T06:01:49,840 adding 'SOAPy_st/pp/all2adata.py' 2025-02-23T06:01:49,842 adding 'SOAPy_st/pp/build_network.py' 2025-02-23T06:01:49,843 adding 'SOAPy_st/pp/utils.py' 2025-02-23T06:01:49,845 adding 'SOAPy_st/tl/__init__.py' 2025-02-23T06:01:49,849 adding 'SOAPy_st/tl/_ccc.py' 2025-02-23T06:01:49,851 adding 'SOAPy_st/tl/_domain.py' 2025-02-23T06:01:49,854 adding 'SOAPy_st/tl/_interaction.py' 2025-02-23T06:01:49,856 adding 'SOAPy_st/tl/_mask.py' 2025-02-23T06:01:49,860 adding 'SOAPy_st/tl/_tendency.py' 2025-02-23T06:01:49,862 adding 'SOAPy_st/tl/_tensor.py' 2025-02-23T06:01:49,863 adding 'SOAPy_st/tl/_var_genes.py' 2025-02-23T06:01:49,866 adding 'SOAPy_st/tl/utils.py' 2025-02-23T06:01:49,898 adding 'SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv' 2025-02-23T06:01:49,934 adding 'SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv' 2025-02-23T06:01:49,939 adding 'SOAPy_st/tl/other_package_without_pip/__init__.py' 2025-02-23T06:01:49,941 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py' 2025-02-23T06:01:49,942 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py' 2025-02-23T06:01:49,944 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/model.py' 2025-02-23T06:01:49,945 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py' 2025-02-23T06:01:49,947 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/utils.py' 2025-02-23T06:01:49,949 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py' 2025-02-23T06:01:49,950 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py' 2025-02-23T06:01:49,952 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py' 2025-02-23T06:01:49,953 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py' 2025-02-23T06:01:49,955 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py' 2025-02-23T06:01:49,958 adding 'SOAPy_st/tl/other_package_without_pip/scanit/__init__.py' 2025-02-23T06:01:49,959 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py' 2025-02-23T06:01:49,960 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py' 2025-02-23T06:01:49,962 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py' 2025-02-23T06:01:49,963 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py' 2025-02-23T06:01:49,964 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py' 2025-02-23T06:01:49,965 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py' 2025-02-23T06:01:49,967 adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py' 2025-02-23T06:01:49,969 adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py' 2025-02-23T06:01:49,975 adding 'SOAPy_st-1.0.0.dist-info/LICENSE.md' 2025-02-23T06:01:49,977 adding 'SOAPy_st-1.0.0.dist-info/METADATA' 2025-02-23T06:01:49,977 adding 'SOAPy_st-1.0.0.dist-info/WHEEL' 2025-02-23T06:01:49,978 adding 'SOAPy_st-1.0.0.dist-info/top_level.txt' 2025-02-23T06:01:49,980 adding 'SOAPy_st-1.0.0.dist-info/RECORD' 2025-02-23T06:01:49,984 removing build/bdist.linux-armv7l/wheel 2025-02-23T06:01:50,110 Building wheel for soapy-st (setup.py): finished with status 'done' 2025-02-23T06:01:50,115 Created wheel for soapy-st: filename=SOAPy_st-1.0.0-py3-none-any.whl size=242916 sha256=8f010b2afe11289808fb7b923953ab8171268aac8f0099be829caf9c8a510b8b 2025-02-23T06:01:50,117 Stored in directory: /tmp/pip-ephem-wheel-cache-rlewqe9l/wheels/29/50/23/e39c79738842f082bf99c720a937fc61f06f1f02dbb5bbc469 2025-02-23T06:01:50,130 Successfully built soapy-st 2025-02-23T06:01:50,141 Removed build tracker: '/tmp/pip-build-tracker-ueupg0cr'