2025-02-24T23:12:01,723 Created temporary directory: /tmp/pip-build-tracker-f8a7qe99 2025-02-24T23:12:01,724 Initialized build tracking at /tmp/pip-build-tracker-f8a7qe99 2025-02-24T23:12:01,725 Created build tracker: /tmp/pip-build-tracker-f8a7qe99 2025-02-24T23:12:01,725 Entered build tracker: /tmp/pip-build-tracker-f8a7qe99 2025-02-24T23:12:01,726 Created temporary directory: /tmp/pip-wheel-u53tqmpt 2025-02-24T23:12:01,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-24x5fiu3 2025-02-24T23:12:01,773 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-24T23:12:01,775 2 location(s) to search for versions of nmdc-runtime: 2025-02-24T23:12:01,775 * https://pypi.org/simple/nmdc-runtime/ 2025-02-24T23:12:01,775 * https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-24T23:12:01,776 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2025-02-24T23:12:01,777 Getting page https://pypi.org/simple/nmdc-runtime/ 2025-02-24T23:12:01,779 Found index url https://pypi.org/simple/ 2025-02-24T23:12:02,003 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2025-02-24T23:12:02,017 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-02-24T23:12:02,018 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2025-02-24T23:12:02,019 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) 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https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-02-24T23:12:02,076 Found link https://files.pythonhosted.org/packages/26/75/241e268a408f69c3bf5e5c86bf47c69e972c1cf0916111df97d3ec7eeebe/nmdc_runtime-2.4.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 2.4.0 2025-02-24T23:12:02,077 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-24T23:12:02,077 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-24T23:12:02,079 Found index url https://www.piwheels.org/simple/ 2025-02-24T23:12:02,265 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2025-02-24T23:12:02,275 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-2.3.0-py3-none-any.whl#sha256=89b1e037a58f26c71897b460d659b85999b68dc894036ed63520efda8bb3cd0b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 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https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-02-24T23:12:02,292 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2025-02-24T23:12:02,293 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2025-02-24T23:12:02,315 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2025-02-24T23:12:02,317 Collecting nmdc-runtime==2.4.0 2025-02-24T23:12:02,319 Created temporary directory: /tmp/pip-unpack-jifi2tm4 2025-02-24T23:12:02,542 Downloading nmdc_runtime-2.4.0.tar.gz (63.9 MB) 2025-02-24T23:12:19,210 Added nmdc-runtime==2.4.0 from https://files.pythonhosted.org/packages/26/75/241e268a408f69c3bf5e5c86bf47c69e972c1cf0916111df97d3ec7eeebe/nmdc_runtime-2.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-f8a7qe99' 2025-02-24T23:12:19,212 Running setup.py (path:/tmp/pip-wheel-u53tqmpt/nmdc-runtime_127da5aa8316467a8ecf34ade1687310/setup.py) egg_info for package nmdc-runtime 2025-02-24T23:12:19,213 Created temporary directory: /tmp/pip-pip-egg-info-sim4fwo9 2025-02-24T23:12:19,214 Preparing metadata (setup.py): started 2025-02-24T23:12:19,215 Running command python setup.py egg_info 2025-02-24T23:12:20,025 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-02-24T23:12:20,025 !! 2025-02-24T23:12:20,026 ******************************************************************************** 2025-02-24T23:12:20,027 Requirements should be satisfied by a PEP 517 installer. 2025-02-24T23:12:20,027 If you are using pip, you can try `pip install --use-pep517`. 2025-02-24T23:12:20,028 ******************************************************************************** 2025-02-24T23:12:20,029 !! 2025-02-24T23:12:20,029 dist.fetch_build_eggs(dist.setup_requires) 2025-02-24T23:12:23,325 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2025-02-24T23:12:23,326 Traceback (most recent call last): 2025-02-24T23:12:23,326 File "/tmp/pip-wheel-u53tqmpt/nmdc-runtime_127da5aa8316467a8ecf34ade1687310/.eggs/setuptools_scm-8.2.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2025-02-24T23:12:23,327 section = defn.get("tool", {})[tool_name] 2025-02-24T23:12:23,327 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-02-24T23:12:23,328 KeyError: 'setuptools_scm' 2025-02-24T23:12:23,434 running egg_info 2025-02-24T23:12:23,465 creating /tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info 2025-02-24T23:12:23,466 writing /tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/PKG-INFO 2025-02-24T23:12:23,470 writing dependency_links to /tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/dependency_links.txt 2025-02-24T23:12:23,471 writing entry points to /tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/entry_points.txt 2025-02-24T23:12:23,473 writing top-level names to /tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/top_level.txt 2025-02-24T23:12:23,475 writing manifest file '/tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-24T23:12:23,689 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2025-02-24T23:12:23,695 reading manifest file '/tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-24T23:12:23,697 adding license file 'LICENSE' 2025-02-24T23:12:23,702 writing manifest file '/tmp/pip-pip-egg-info-sim4fwo9/nmdc_runtime.egg-info/SOURCES.txt' 2025-02-24T23:12:23,818 Preparing metadata (setup.py): finished with status 'done' 2025-02-24T23:12:23,823 Source in /tmp/pip-wheel-u53tqmpt/nmdc-runtime_127da5aa8316467a8ecf34ade1687310 has version 2.4.0, which satisfies requirement nmdc-runtime==2.4.0 from https://files.pythonhosted.org/packages/26/75/241e268a408f69c3bf5e5c86bf47c69e972c1cf0916111df97d3ec7eeebe/nmdc_runtime-2.4.0.tar.gz 2025-02-24T23:12:23,824 Removed nmdc-runtime==2.4.0 from https://files.pythonhosted.org/packages/26/75/241e268a408f69c3bf5e5c86bf47c69e972c1cf0916111df97d3ec7eeebe/nmdc_runtime-2.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-f8a7qe99' 2025-02-24T23:12:23,830 Created temporary directory: /tmp/pip-unpack-ian0g886 2025-02-24T23:12:23,831 Created temporary directory: /tmp/pip-unpack-315ha7v_ 2025-02-24T23:12:23,832 Building wheels for collected packages: nmdc-runtime 2025-02-24T23:12:23,837 Created temporary directory: /tmp/pip-wheel-dtk6xlqv 2025-02-24T23:12:23,838 Building wheel for nmdc-runtime (setup.py): started 2025-02-24T23:12:23,839 Destination directory: /tmp/pip-wheel-dtk6xlqv 2025-02-24T23:12:23,840 Running command python setup.py bdist_wheel 2025-02-24T23:12:24,567 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-02-24T23:12:24,567 !! 2025-02-24T23:12:24,569 ******************************************************************************** 2025-02-24T23:12:24,569 Requirements should be satisfied by a PEP 517 installer. 2025-02-24T23:12:24,569 If you are using pip, you can try `pip install --use-pep517`. 2025-02-24T23:12:24,570 ******************************************************************************** 2025-02-24T23:12:24,571 !! 2025-02-24T23:12:24,571 dist.fetch_build_eggs(dist.setup_requires) 2025-02-24T23:12:25,145 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2025-02-24T23:12:25,145 Traceback (most recent call last): 2025-02-24T23:12:25,146 File "/tmp/pip-wheel-u53tqmpt/nmdc-runtime_127da5aa8316467a8ecf34ade1687310/.eggs/setuptools_scm-8.2.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2025-02-24T23:12:25,146 section = defn.get("tool", {})[tool_name] 2025-02-24T23:12:25,147 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-02-24T23:12:25,147 KeyError: 'setuptools_scm' 2025-02-24T23:12:25,216 running bdist_wheel 2025-02-24T23:12:25,365 running build 2025-02-24T23:12:25,365 running build_py 2025-02-24T23:12:25,402 creating build/lib/nmdc_runtime 2025-02-24T23:12:25,404 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2025-02-24T23:12:25,407 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2025-02-24T23:12:25,409 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2025-02-24T23:12:25,411 copying nmdc_runtime/config.py -> build/lib/nmdc_runtime 2025-02-24T23:12:25,413 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2025-02-24T23:12:25,415 creating build/lib/nmdc_runtime/minter 2025-02-24T23:12:25,416 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2025-02-24T23:12:25,419 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2025-02-24T23:12:25,421 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2025-02-24T23:12:25,423 creating build/lib/nmdc_runtime/domain 2025-02-24T23:12:25,424 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2025-02-24T23:12:25,426 creating build/lib/nmdc_runtime/client 2025-02-24T23:12:25,427 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2025-02-24T23:12:25,429 creating build/lib/nmdc_runtime/site 2025-02-24T23:12:25,430 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,432 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,435 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,438 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,441 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,444 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2025-02-24T23:12:25,446 creating build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,447 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,449 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,452 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,454 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,457 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,458 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2025-02-24T23:12:25,461 creating build/lib/nmdc_runtime/infrastructure 2025-02-24T23:12:25,463 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2025-02-24T23:12:25,465 creating build/lib/nmdc_runtime/core 2025-02-24T23:12:25,466 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2025-02-24T23:12:25,468 creating build/lib/nmdc_runtime/minter/domain 2025-02-24T23:12:25,469 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2025-02-24T23:12:25,471 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2025-02-24T23:12:25,473 creating build/lib/nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,474 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,476 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,478 creating build/lib/nmdc_runtime/minter/adapters 2025-02-24T23:12:25,480 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2025-02-24T23:12:25,482 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2025-02-24T23:12:25,484 creating build/lib/nmdc_runtime/domain/users 2025-02-24T23:12:25,485 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2025-02-24T23:12:25,487 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2025-02-24T23:12:25,489 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2025-02-24T23:12:25,490 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2025-02-24T23:12:25,492 creating build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,493 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,497 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,498 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,501 copying nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,504 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,506 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,508 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,511 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,513 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,515 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,516 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,518 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2025-02-24T23:12:25,522 creating build/lib/nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,523 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,525 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,527 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,529 creating build/lib/nmdc_runtime/site/repair 2025-02-24T23:12:25,530 copying nmdc_runtime/site/repair/database_updater.py -> build/lib/nmdc_runtime/site/repair 2025-02-24T23:12:25,533 copying nmdc_runtime/site/repair/__init__.py -> build/lib/nmdc_runtime/site/repair 2025-02-24T23:12:25,535 creating build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,536 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,538 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,540 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,542 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,544 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2025-02-24T23:12:25,546 creating build/lib/nmdc_runtime/site/changesheets 2025-02-24T23:12:25,547 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2025-02-24T23:12:25,548 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2025-02-24T23:12:25,551 creating build/lib/nmdc_runtime/site/export 2025-02-24T23:12:25,552 copying nmdc_runtime/site/export/ncbi_xml_utils.py -> build/lib/nmdc_runtime/site/export 2025-02-24T23:12:25,554 copying nmdc_runtime/site/export/ncbi_xml.py -> build/lib/nmdc_runtime/site/export 2025-02-24T23:12:25,557 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2025-02-24T23:12:25,559 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2025-02-24T23:12:25,561 creating build/lib/nmdc_runtime/site/normalization 2025-02-24T23:12:25,562 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2025-02-24T23:12:25,564 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2025-02-24T23:12:25,566 creating build/lib/nmdc_runtime/site/backup 2025-02-24T23:12:25,567 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2025-02-24T23:12:25,569 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2025-02-24T23:12:25,571 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2025-02-24T23:12:25,573 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2025-02-24T23:12:25,575 creating build/lib/nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,577 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,579 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,581 creating build/lib/nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,582 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,584 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,586 creating build/lib/nmdc_runtime/core/exceptions 2025-02-24T23:12:25,587 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-24T23:12:25,589 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-24T23:12:25,590 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2025-02-24T23:12:25,593 creating build/lib/nmdc_runtime/core/db 2025-02-24T23:12:25,594 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2025-02-24T23:12:25,596 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2025-02-24T23:12:25,649 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-24T23:12:25,650 !! 2025-02-24T23:12:25,651 ******************************************************************************** 2025-02-24T23:12:25,652 Please avoid running ``setup.py`` directly. 2025-02-24T23:12:25,652 Instead, use pypa/build, pypa/installer or other 2025-02-24T23:12:25,653 standards-based tools. 2025-02-24T23:12:25,654 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-24T23:12:25,655 ******************************************************************************** 2025-02-24T23:12:25,656 !! 2025-02-24T23:12:25,656 self.initialize_options() 2025-02-24T23:12:25,679 installing to build/bdist.linux-armv7l/wheel 2025-02-24T23:12:25,679 running install 2025-02-24T23:12:25,704 running install_lib 2025-02-24T23:12:25,733 creating build/bdist.linux-armv7l/wheel 2025-02-24T23:12:25,735 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2025-02-24T23:12:25,737 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2025-02-24T23:12:25,739 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2025-02-24T23:12:25,740 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-02-24T23:12:25,742 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-02-24T23:12:25,743 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-24T23:12:25,746 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,747 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,749 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-02-24T23:12:25,750 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-24T23:12:25,752 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-02-24T23:12:25,754 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2025-02-24T23:12:25,755 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-02-24T23:12:25,757 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-02-24T23:12:25,759 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-24T23:12:25,762 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2025-02-24T23:12:25,764 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2025-02-24T23:12:25,765 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-24T23:12:25,767 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-24T23:12:25,769 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-24T23:12:25,771 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-02-24T23:12:25,773 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain 2025-02-24T23:12:25,775 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2025-02-24T23:12:25,776 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/client 2025-02-24T23:12:25,779 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2025-02-24T23:12:25,781 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2025-02-24T23:12:25,782 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,785 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,787 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,790 copying build/lib/nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,793 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,795 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,797 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,800 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,803 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,805 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,807 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,808 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-02-24T23:12:25,812 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,813 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,815 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,817 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-02-24T23:12:25,819 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,821 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/repair 2025-02-24T23:12:25,823 copying build/lib/nmdc_runtime/site/repair/database_updater.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-02-24T23:12:25,826 copying build/lib/nmdc_runtime/site/repair/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-02-24T23:12:25,828 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2025-02-24T23:12:25,829 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-24T23:12:25,831 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-24T23:12:25,833 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-24T23:12:25,836 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-24T23:12:25,838 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-02-24T23:12:25,840 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,843 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2025-02-24T23:12:25,845 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-02-24T23:12:25,847 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-02-24T23:12:25,849 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,851 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,857 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2025-02-24T23:12:25,859 copying build/lib/nmdc_runtime/site/export/ncbi_xml_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-24T23:12:25,866 copying build/lib/nmdc_runtime/site/export/ncbi_xml.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-24T23:12:25,871 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-24T23:12:25,874 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-02-24T23:12:25,878 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2025-02-24T23:12:25,881 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-02-24T23:12:25,885 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-02-24T23:12:25,887 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,893 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-02-24T23:12:25,895 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2025-02-24T23:12:25,900 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-24T23:12:25,902 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-24T23:12:25,904 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-24T23:12:25,906 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-02-24T23:12:25,908 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2025-02-24T23:12:25,909 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,911 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,915 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,917 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,921 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,923 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-02-24T23:12:25,926 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2025-02-24T23:12:25,928 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,930 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,932 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,933 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,935 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-02-24T23:12:25,937 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-02-24T23:12:25,939 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure 2025-02-24T23:12:25,941 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-24T23:12:25,943 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2025-02-24T23:12:25,945 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2025-02-24T23:12:25,947 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-24T23:12:25,949 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-24T23:12:25,950 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-02-24T23:12:25,953 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2025-02-24T23:12:25,954 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-02-24T23:12:25,956 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-02-24T23:12:25,958 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core 2025-02-24T23:12:25,960 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-24T23:12:25,963 copying build/lib/nmdc_runtime/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-24T23:12:25,965 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-02-24T23:12:25,966 running install_egg_info 2025-02-24T23:12:25,999 running egg_info 2025-02-24T23:12:26,030 writing nmdc_runtime.egg-info/PKG-INFO 2025-02-24T23:12:26,033 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2025-02-24T23:12:26,035 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2025-02-24T23:12:26,036 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2025-02-24T23:12:26,155 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2025-02-24T23:12:26,158 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-02-24T23:12:26,242 adding license file 'LICENSE' 2025-02-24T23:12:26,261 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-02-24T23:12:26,263 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/./nmdc_runtime-2.4.0-py3.11.egg-info 2025-02-24T23:12:26,275 running install_scripts 2025-02-24T23:12:26,288 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-2.4.0.dist-info/WHEEL 2025-02-24T23:12:26,291 creating '/tmp/pip-wheel-dtk6xlqv/nmdc_runtime-2.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-24T23:12:26,293 adding 'nmdc_runtime/__init__.py' 2025-02-24T23:12:26,294 adding 'nmdc_runtime/config.py' 2025-02-24T23:12:26,295 adding 'nmdc_runtime/containers.py' 2025-02-24T23:12:26,296 adding 'nmdc_runtime/main.py' 2025-02-24T23:12:26,301 adding 'nmdc_runtime/util.py' 2025-02-24T23:12:26,302 adding 'nmdc_runtime/client/__init__.py' 2025-02-24T23:12:26,304 adding 'nmdc_runtime/core/__init__.py' 2025-02-24T23:12:26,306 adding 'nmdc_runtime/core/db/Database.py' 2025-02-24T23:12:26,307 adding 'nmdc_runtime/core/db/__init__.py' 2025-02-24T23:12:26,309 adding 'nmdc_runtime/core/exceptions/__init__.py' 2025-02-24T23:12:26,310 adding 'nmdc_runtime/core/exceptions/base.py' 2025-02-24T23:12:26,312 adding 'nmdc_runtime/core/exceptions/token.py' 2025-02-24T23:12:26,313 adding 'nmdc_runtime/domain/__init__.py' 2025-02-24T23:12:26,315 adding 'nmdc_runtime/domain/users/__init__.py' 2025-02-24T23:12:26,316 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2025-02-24T23:12:26,318 adding 'nmdc_runtime/domain/users/userSchema.py' 2025-02-24T23:12:26,319 adding 'nmdc_runtime/domain/users/userService.py' 2025-02-24T23:12:26,321 adding 'nmdc_runtime/infrastructure/__init__.py' 2025-02-24T23:12:26,322 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2025-02-24T23:12:26,324 adding 'nmdc_runtime/infrastructure/database/db.py' 2025-02-24T23:12:26,326 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2025-02-24T23:12:26,327 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2025-02-24T23:12:26,329 adding 'nmdc_runtime/lib/__init__.py' 2025-02-24T23:12:26,330 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2025-02-24T23:12:26,332 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2025-02-24T23:12:26,335 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2025-02-24T23:12:26,337 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2025-02-24T23:12:26,343 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2025-02-24T23:12:26,345 adding 'nmdc_runtime/minter/__init__.py' 2025-02-24T23:12:26,346 adding 'nmdc_runtime/minter/bootstrap.py' 2025-02-24T23:12:26,348 adding 'nmdc_runtime/minter/config.py' 2025-02-24T23:12:26,349 adding 'nmdc_runtime/minter/adapters/__init__.py' 2025-02-24T23:12:26,351 adding 'nmdc_runtime/minter/adapters/repository.py' 2025-02-24T23:12:26,353 adding 'nmdc_runtime/minter/domain/__init__.py' 2025-02-24T23:12:26,354 adding 'nmdc_runtime/minter/domain/model.py' 2025-02-24T23:12:26,355 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2025-02-24T23:12:26,357 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2025-02-24T23:12:26,358 adding 'nmdc_runtime/site/__init__.py' 2025-02-24T23:12:26,360 adding 'nmdc_runtime/site/graphs.py' 2025-02-24T23:12:26,365 adding 'nmdc_runtime/site/ops.py' 2025-02-24T23:12:26,368 adding 'nmdc_runtime/site/repository.py' 2025-02-24T23:12:26,371 adding 'nmdc_runtime/site/resources.py' 2025-02-24T23:12:26,372 adding 'nmdc_runtime/site/util.py' 2025-02-24T23:12:26,374 adding 'nmdc_runtime/site/backup/__init__.py' 2025-02-24T23:12:26,375 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2025-02-24T23:12:26,377 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2025-02-24T23:12:26,378 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2025-02-24T23:12:26,380 adding 'nmdc_runtime/site/changesheets/__init__.py' 2025-02-24T23:12:26,381 adding 'nmdc_runtime/site/changesheets/base.py' 2025-02-24T23:12:26,382 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2025-02-24T23:12:26,384 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2025-02-24T23:12:26,385 adding 'nmdc_runtime/site/drsobjects/registration.py' 2025-02-24T23:12:26,387 adding 'nmdc_runtime/site/export/__init__.py' 2025-02-24T23:12:26,390 adding 'nmdc_runtime/site/export/ncbi_xml.py' 2025-02-24T23:12:26,392 adding 'nmdc_runtime/site/export/ncbi_xml_utils.py' 2025-02-24T23:12:26,393 adding 'nmdc_runtime/site/export/study_metadata.py' 2025-02-24T23:12:26,395 adding 'nmdc_runtime/site/normalization/__init__.py' 2025-02-24T23:12:26,396 adding 'nmdc_runtime/site/normalization/gold.py' 2025-02-24T23:12:26,398 adding 'nmdc_runtime/site/repair/__init__.py' 2025-02-24T23:12:26,400 adding 'nmdc_runtime/site/repair/database_updater.py' 2025-02-24T23:12:26,402 adding 'nmdc_runtime/site/translation/__init__.py' 2025-02-24T23:12:26,403 adding 'nmdc_runtime/site/translation/emsl.py' 2025-02-24T23:12:26,405 adding 'nmdc_runtime/site/translation/gold.py' 2025-02-24T23:12:26,408 adding 'nmdc_runtime/site/translation/gold_translator.py' 2025-02-24T23:12:26,410 adding 'nmdc_runtime/site/translation/jgi.py' 2025-02-24T23:12:26,412 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2025-02-24T23:12:26,416 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2025-02-24T23:12:26,419 adding 'nmdc_runtime/site/translation/neon_surface_water_translator.py' 2025-02-24T23:12:26,421 adding 'nmdc_runtime/site/translation/neon_utils.py' 2025-02-24T23:12:26,424 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2025-02-24T23:12:26,426 adding 'nmdc_runtime/site/translation/translator.py' 2025-02-24T23:12:26,427 adding 'nmdc_runtime/site/translation/util.py' 2025-02-24T23:12:26,429 adding 'nmdc_runtime/site/validation/__init__.py' 2025-02-24T23:12:26,430 adding 'nmdc_runtime/site/validation/emsl.py' 2025-02-24T23:12:26,431 adding 'nmdc_runtime/site/validation/gold.py' 2025-02-24T23:12:26,432 adding 'nmdc_runtime/site/validation/jgi.py' 2025-02-24T23:12:26,434 adding 'nmdc_runtime/site/validation/util.py' 2025-02-24T23:12:26,436 adding 'nmdc_runtime-2.4.0.dist-info/LICENSE' 2025-02-24T23:12:26,438 adding 'nmdc_runtime-2.4.0.dist-info/METADATA' 2025-02-24T23:12:26,439 adding 'nmdc_runtime-2.4.0.dist-info/WHEEL' 2025-02-24T23:12:26,440 adding 'nmdc_runtime-2.4.0.dist-info/entry_points.txt' 2025-02-24T23:12:26,441 adding 'nmdc_runtime-2.4.0.dist-info/top_level.txt' 2025-02-24T23:12:26,443 adding 'nmdc_runtime-2.4.0.dist-info/RECORD' 2025-02-24T23:12:26,446 removing build/bdist.linux-armv7l/wheel 2025-02-24T23:12:26,591 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2025-02-24T23:12:26,594 Created wheel for nmdc-runtime: filename=nmdc_runtime-2.4.0-py3-none-any.whl size=135592 sha256=6137a264f1d5607eda45ca8c0e737906b45dd0f239d3d2c9116dc498e1b248bd 2025-02-24T23:12:26,596 Stored in directory: /tmp/pip-ephem-wheel-cache-24x5fiu3/wheels/7b/54/6d/a91a5ca6a31564acb8d46c42585ba4ca309ccb3c141f60ef6e 2025-02-24T23:12:26,609 Successfully built nmdc-runtime 2025-02-24T23:12:26,617 Removed build tracker: '/tmp/pip-build-tracker-f8a7qe99'