2025-02-25T02:27:03,881 Created temporary directory: /tmp/pip-build-tracker-qvowhrsm 2025-02-25T02:27:03,883 Initialized build tracking at /tmp/pip-build-tracker-qvowhrsm 2025-02-25T02:27:03,883 Created build tracker: /tmp/pip-build-tracker-qvowhrsm 2025-02-25T02:27:03,884 Entered build tracker: /tmp/pip-build-tracker-qvowhrsm 2025-02-25T02:27:03,885 Created temporary directory: /tmp/pip-wheel-kk9lyzes 2025-02-25T02:27:03,889 Created temporary directory: /tmp/pip-ephem-wheel-cache-cecjq0kr 2025-02-25T02:27:03,935 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-25T02:27:03,938 2 location(s) to search for versions of rxngraphormer: 2025-02-25T02:27:03,938 * https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:27:03,938 * https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:27:03,939 Fetching project page and analyzing links: https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:27:03,940 Getting page https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:27:03,941 Found index url https://pypi.org/simple/ 2025-02-25T02:27:04,162 Fetched page https://pypi.org/simple/rxngraphormer/ as application/vnd.pypi.simple.v1+json 2025-02-25T02:27:04,164 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/1d/f1/20631b70c4c8da6d27c035dc443f1010c138e6288891c713933c7a5121d0/rxngraphormer-0.6.0-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T02:27:04,165 Found link https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.0 2025-02-25T02:27:04,166 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/13/42/2b13e5e64e726b03a0b8a627ccdb24368cf9928eb39879f483fde017afa4/rxngraphormer-0.6.1-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T02:27:04,166 Found link https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.1 2025-02-25T02:27:04,167 Fetching project page and analyzing links: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:27:04,168 Getting page https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:27:04,170 Found index url https://www.piwheels.org/simple/ 2025-02-25T02:27:04,371 Fetched page https://www.piwheels.org/simple/rxngraphormer/ as text/html 2025-02-25T02:27:04,372 Skipping link: not a file: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:27:04,373 Skipping link: not a file: https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:27:04,392 Given no hashes to check 1 links for project 'rxngraphormer': discarding no candidates 2025-02-25T02:27:04,394 Collecting rxngraphormer==0.6.0 2025-02-25T02:27:04,396 Created temporary directory: /tmp/pip-unpack-_idfxn4g 2025-02-25T02:27:04,536 Downloading rxngraphormer-0.6.0.tar.gz (81 kB) 2025-02-25T02:27:04,680 Added rxngraphormer==0.6.0 from https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-qvowhrsm' 2025-02-25T02:27:04,682 Running setup.py (path:/tmp/pip-wheel-kk9lyzes/rxngraphormer_58c57b480aa8414d8a6e40e112c832d7/setup.py) egg_info for package rxngraphormer 2025-02-25T02:27:04,683 Created temporary directory: /tmp/pip-pip-egg-info-3m1skrdw 2025-02-25T02:27:04,684 Preparing metadata (setup.py): started 2025-02-25T02:27:04,685 Running command python setup.py egg_info 2025-02-25T02:27:05,252 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T02:27:05,252 warnings.warn(msg) 2025-02-25T02:27:05,785 running egg_info 2025-02-25T02:27:05,821 creating /tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info 2025-02-25T02:27:05,822 writing /tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/PKG-INFO 2025-02-25T02:27:05,826 writing dependency_links to /tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/dependency_links.txt 2025-02-25T02:27:05,828 writing top-level names to /tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/top_level.txt 2025-02-25T02:27:05,830 writing manifest file '/tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:27:05,923 reading manifest file '/tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:27:05,925 adding license file 'LICENSE' 2025-02-25T02:27:05,928 writing manifest file '/tmp/pip-pip-egg-info-3m1skrdw/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:27:06,036 Preparing metadata (setup.py): finished with status 'done' 2025-02-25T02:27:06,040 Source in /tmp/pip-wheel-kk9lyzes/rxngraphormer_58c57b480aa8414d8a6e40e112c832d7 has version 0.6.0, which satisfies requirement rxngraphormer==0.6.0 from https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz 2025-02-25T02:27:06,041 Removed rxngraphormer==0.6.0 from https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-qvowhrsm' 2025-02-25T02:27:06,045 Created temporary directory: /tmp/pip-unpack-gj2s38ec 2025-02-25T02:27:06,046 Created temporary directory: /tmp/pip-unpack-e_weino6 2025-02-25T02:27:06,046 Building wheels for collected packages: rxngraphormer 2025-02-25T02:27:06,050 Created temporary directory: /tmp/pip-wheel-kpptglwd 2025-02-25T02:27:06,051 Building wheel for rxngraphormer (setup.py): started 2025-02-25T02:27:06,052 Destination directory: /tmp/pip-wheel-kpptglwd 2025-02-25T02:27:06,053 Running command python setup.py bdist_wheel 2025-02-25T02:27:06,577 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T02:27:06,577 warnings.warn(msg) 2025-02-25T02:27:07,066 running bdist_wheel 2025-02-25T02:27:07,199 running build 2025-02-25T02:27:07,199 running build_py 2025-02-25T02:27:07,230 creating build/lib/rxngraphormer 2025-02-25T02:27:07,232 copying rxngraphormer/ext_feat.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,234 copying rxngraphormer/eval.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,237 copying rxngraphormer/train.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,241 copying rxngraphormer/layer.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,244 copying rxngraphormer/scheduler.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,246 copying rxngraphormer/model.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,249 copying rxngraphormer/data.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,252 copying rxngraphormer/__init__.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,254 copying rxngraphormer/utils.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,256 copying rxngraphormer/rxn_emb.py -> build/lib/rxngraphormer 2025-02-25T02:27:07,259 creating build/lib/rxngraphormer/midgen 2025-02-25T02:27:07,260 copying rxngraphormer/midgen/__init__.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:27:07,263 copying rxngraphormer/midgen/MechFinder.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:27:07,266 copying rxngraphormer/midgen/midmol.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:27:07,268 creating build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,270 copying rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,273 copying rxngraphormer/midgen/LocalTemplate/__init__.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,274 copying rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,277 copying rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,280 creating build/lib/rxngraphormer/midgen/utils 2025-02-25T02:27:07,281 copying rxngraphormer/midgen/utils/__init__.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:27:07,283 copying rxngraphormer/midgen/utils/arrow_pushing.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:27:07,285 copying rxngraphormer/midgen/utils/utils.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:27:07,287 copying rxngraphormer/midgen/utils/criterions.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:27:07,290 creating build/lib/rxngraphormer/midgen/collections 2025-02-25T02:27:07,291 copying rxngraphormer/midgen/collections/__init__.py -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:27:07,297 copying rxngraphormer/midgen/collections/MT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:27:07,300 copying rxngraphormer/midgen/collections/LRT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:27:07,332 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-25T02:27:07,332 !! 2025-02-25T02:27:07,333 ******************************************************************************** 2025-02-25T02:27:07,334 Please avoid running ``setup.py`` directly. 2025-02-25T02:27:07,335 Instead, use pypa/build, pypa/installer or other 2025-02-25T02:27:07,335 standards-based tools. 2025-02-25T02:27:07,336 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-25T02:27:07,336 ******************************************************************************** 2025-02-25T02:27:07,338 !! 2025-02-25T02:27:07,338 self.initialize_options() 2025-02-25T02:27:07,359 installing to build/bdist.linux-armv7l/wheel 2025-02-25T02:27:07,359 running install 2025-02-25T02:27:07,385 running install_lib 2025-02-25T02:27:07,412 creating build/bdist.linux-armv7l/wheel 2025-02-25T02:27:07,414 creating build/bdist.linux-armv7l/wheel/rxngraphormer 2025-02-25T02:27:07,415 copying build/lib/rxngraphormer/ext_feat.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,418 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen 2025-02-25T02:27:07,420 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,421 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,424 copying build/lib/rxngraphormer/midgen/LocalTemplate/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,426 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,428 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:27:07,431 copying build/lib/rxngraphormer/midgen/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:27:07,433 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/utils 2025-02-25T02:27:07,434 copying build/lib/rxngraphormer/midgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:27:07,436 copying build/lib/rxngraphormer/midgen/utils/arrow_pushing.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:27:07,438 copying build/lib/rxngraphormer/midgen/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:27:07,440 copying build/lib/rxngraphormer/midgen/utils/criterions.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:27:07,443 copying build/lib/rxngraphormer/midgen/MechFinder.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:27:07,445 copying build/lib/rxngraphormer/midgen/midmol.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:27:07,448 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/collections 2025-02-25T02:27:07,449 copying build/lib/rxngraphormer/midgen/collections/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:27:07,451 copying build/lib/rxngraphormer/midgen/collections/MT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:27:07,453 copying build/lib/rxngraphormer/midgen/collections/LRT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:27:07,455 copying build/lib/rxngraphormer/eval.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,458 copying build/lib/rxngraphormer/train.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,462 copying build/lib/rxngraphormer/layer.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,464 copying build/lib/rxngraphormer/scheduler.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,466 copying build/lib/rxngraphormer/model.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,469 copying build/lib/rxngraphormer/data.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,472 copying build/lib/rxngraphormer/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,474 copying build/lib/rxngraphormer/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,476 copying build/lib/rxngraphormer/rxn_emb.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:27:07,478 running install_egg_info 2025-02-25T02:27:07,514 running egg_info 2025-02-25T02:27:07,542 writing rxngraphormer.egg-info/PKG-INFO 2025-02-25T02:27:07,544 writing dependency_links to rxngraphormer.egg-info/dependency_links.txt 2025-02-25T02:27:07,547 writing top-level names to rxngraphormer.egg-info/top_level.txt 2025-02-25T02:27:07,581 reading manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:27:07,584 adding license file 'LICENSE' 2025-02-25T02:27:07,588 writing manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:27:07,590 Copying rxngraphormer.egg-info to build/bdist.linux-armv7l/wheel/./rxngraphormer-0.6.0-py3.11.egg-info 2025-02-25T02:27:07,599 running install_scripts 2025-02-25T02:27:07,611 creating build/bdist.linux-armv7l/wheel/rxngraphormer-0.6.0.dist-info/WHEEL 2025-02-25T02:27:07,613 creating '/tmp/pip-wheel-kpptglwd/rxngraphormer-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-25T02:27:07,615 adding 'rxngraphormer/__init__.py' 2025-02-25T02:27:07,620 adding 'rxngraphormer/data.py' 2025-02-25T02:27:07,622 adding 'rxngraphormer/eval.py' 2025-02-25T02:27:07,624 adding 'rxngraphormer/ext_feat.py' 2025-02-25T02:27:07,628 adding 'rxngraphormer/layer.py' 2025-02-25T02:27:07,635 adding 'rxngraphormer/model.py' 2025-02-25T02:27:07,637 adding 'rxngraphormer/rxn_emb.py' 2025-02-25T02:27:07,639 adding 'rxngraphormer/scheduler.py' 2025-02-25T02:27:07,646 adding 'rxngraphormer/train.py' 2025-02-25T02:27:07,649 adding 'rxngraphormer/utils.py' 2025-02-25T02:27:07,651 adding 'rxngraphormer/midgen/MechFinder.py' 2025-02-25T02:27:07,653 adding 'rxngraphormer/midgen/__init__.py' 2025-02-25T02:27:07,654 adding 'rxngraphormer/midgen/midmol.py' 2025-02-25T02:27:07,656 adding 'rxngraphormer/midgen/LocalTemplate/__init__.py' 2025-02-25T02:27:07,658 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_extention.py' 2025-02-25T02:27:07,660 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_utils.py' 2025-02-25T02:27:07,664 adding 'rxngraphormer/midgen/LocalTemplate/template_extractor.py' 2025-02-25T02:27:07,667 adding 'rxngraphormer/midgen/collections/LRT_library.csv' 2025-02-25T02:27:07,669 adding 'rxngraphormer/midgen/collections/MT_library.csv' 2025-02-25T02:27:07,670 adding 'rxngraphormer/midgen/collections/__init__.py' 2025-02-25T02:27:07,672 adding 'rxngraphormer/midgen/utils/__init__.py' 2025-02-25T02:27:07,674 adding 'rxngraphormer/midgen/utils/arrow_pushing.py' 2025-02-25T02:27:07,675 adding 'rxngraphormer/midgen/utils/criterions.py' 2025-02-25T02:27:07,678 adding 'rxngraphormer/midgen/utils/utils.py' 2025-02-25T02:27:07,680 adding 'rxngraphormer-0.6.0.dist-info/LICENSE' 2025-02-25T02:27:07,681 adding 'rxngraphormer-0.6.0.dist-info/METADATA' 2025-02-25T02:27:07,682 adding 'rxngraphormer-0.6.0.dist-info/WHEEL' 2025-02-25T02:27:07,683 adding 'rxngraphormer-0.6.0.dist-info/top_level.txt' 2025-02-25T02:27:07,684 adding 'rxngraphormer-0.6.0.dist-info/RECORD' 2025-02-25T02:27:07,687 removing build/bdist.linux-armv7l/wheel 2025-02-25T02:27:07,807 Building wheel for rxngraphormer (setup.py): finished with status 'done' 2025-02-25T02:27:07,811 Created wheel for rxngraphormer: filename=rxngraphormer-0.6.0-py3-none-any.whl size=87812 sha256=769074ef2fefbe825c4e5a0b47c8b13c914173e4db2e8a7fe7344b1f0db4bc1f 2025-02-25T02:27:07,812 Stored in directory: /tmp/pip-ephem-wheel-cache-cecjq0kr/wheels/ba/c1/2e/e6795e2dda41742fe1048e99f6a5b857f3931b64f650906290 2025-02-25T02:27:07,822 Successfully built rxngraphormer 2025-02-25T02:27:07,827 Removed build tracker: '/tmp/pip-build-tracker-qvowhrsm'