2025-02-25T02:30:25,542 Created temporary directory: /tmp/pip-build-tracker-bmapvaro 2025-02-25T02:30:25,543 Initialized build tracking at /tmp/pip-build-tracker-bmapvaro 2025-02-25T02:30:25,544 Created build tracker: /tmp/pip-build-tracker-bmapvaro 2025-02-25T02:30:25,544 Entered build tracker: /tmp/pip-build-tracker-bmapvaro 2025-02-25T02:30:25,545 Created temporary directory: /tmp/pip-wheel-ruzda4o1 2025-02-25T02:30:25,549 Created temporary directory: /tmp/pip-ephem-wheel-cache-jii05_b6 2025-02-25T02:30:25,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-25T02:30:25,599 2 location(s) to search for versions of rxngraphormer: 2025-02-25T02:30:25,599 * https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:30:25,599 * https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:30:25,600 Fetching project page and analyzing links: https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:30:25,600 Getting page https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:30:25,602 Found index url https://pypi.org/simple/ 2025-02-25T02:30:25,822 Fetched page https://pypi.org/simple/rxngraphormer/ as application/vnd.pypi.simple.v1+json 2025-02-25T02:30:25,824 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/1d/f1/20631b70c4c8da6d27c035dc443f1010c138e6288891c713933c7a5121d0/rxngraphormer-0.6.0-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T02:30:25,824 Found link https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.0 2025-02-25T02:30:25,825 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/13/42/2b13e5e64e726b03a0b8a627ccdb24368cf9928eb39879f483fde017afa4/rxngraphormer-0.6.1-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T02:30:25,825 Found link https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.1 2025-02-25T02:30:25,826 Fetching project page and analyzing links: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:30:25,827 Getting page https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:30:25,828 Found index url https://www.piwheels.org/simple/ 2025-02-25T02:30:25,989 Fetched page https://www.piwheels.org/simple/rxngraphormer/ as text/html 2025-02-25T02:30:25,990 Skipping link: No binaries permitted for rxngraphormer: https://www.piwheels.org/simple/rxngraphormer/rxngraphormer-0.6.0-py3-none-any.whl#sha256=769074ef2fefbe825c4e5a0b47c8b13c914173e4db2e8a7fe7344b1f0db4bc1f (from https://www.piwheels.org/simple/rxngraphormer/) 2025-02-25T02:30:25,991 Skipping link: not a file: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T02:30:25,992 Skipping link: not a file: https://pypi.org/simple/rxngraphormer/ 2025-02-25T02:30:26,010 Given no hashes to check 1 links for project 'rxngraphormer': discarding no candidates 2025-02-25T02:30:26,012 Collecting rxngraphormer==0.6.1 2025-02-25T02:30:26,014 Created temporary directory: /tmp/pip-unpack-rkgnlh17 2025-02-25T02:30:26,233 Downloading rxngraphormer-0.6.1.tar.gz (84 kB) 2025-02-25T02:30:26,385 Added rxngraphormer==0.6.1 from https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-bmapvaro' 2025-02-25T02:30:26,388 Running setup.py (path:/tmp/pip-wheel-ruzda4o1/rxngraphormer_b6bac9685328439195a1136e669767e4/setup.py) egg_info for package rxngraphormer 2025-02-25T02:30:26,389 Created temporary directory: /tmp/pip-pip-egg-info-m82qkchy 2025-02-25T02:30:26,390 Preparing metadata (setup.py): started 2025-02-25T02:30:26,391 Running command python setup.py egg_info 2025-02-25T02:30:26,970 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T02:30:26,970 warnings.warn(msg) 2025-02-25T02:30:27,532 running egg_info 2025-02-25T02:30:27,560 creating /tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info 2025-02-25T02:30:27,562 writing /tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/PKG-INFO 2025-02-25T02:30:27,567 writing dependency_links to /tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/dependency_links.txt 2025-02-25T02:30:27,570 writing requirements to /tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/requires.txt 2025-02-25T02:30:27,571 writing top-level names to /tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/top_level.txt 2025-02-25T02:30:27,572 writing manifest file '/tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:30:27,668 reading manifest file '/tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:30:27,669 reading manifest template 'MANIFEST.in' 2025-02-25T02:30:27,670 adding license file 'LICENSE' 2025-02-25T02:30:27,674 writing manifest file '/tmp/pip-pip-egg-info-m82qkchy/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:30:27,783 Preparing metadata (setup.py): finished with status 'done' 2025-02-25T02:30:27,788 Source in /tmp/pip-wheel-ruzda4o1/rxngraphormer_b6bac9685328439195a1136e669767e4 has version 0.6.1, which satisfies requirement rxngraphormer==0.6.1 from https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz 2025-02-25T02:30:27,789 Removed rxngraphormer==0.6.1 from https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-bmapvaro' 2025-02-25T02:30:27,808 Created temporary directory: /tmp/pip-unpack-m05rfxiz 2025-02-25T02:30:27,809 Created temporary directory: /tmp/pip-unpack-wn0y5r9h 2025-02-25T02:30:27,810 Building wheels for collected packages: rxngraphormer 2025-02-25T02:30:27,815 Created temporary directory: /tmp/pip-wheel-cr06vtyb 2025-02-25T02:30:27,816 Building wheel for rxngraphormer (setup.py): started 2025-02-25T02:30:27,817 Destination directory: /tmp/pip-wheel-cr06vtyb 2025-02-25T02:30:27,818 Running command python setup.py bdist_wheel 2025-02-25T02:30:28,357 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T02:30:28,357 warnings.warn(msg) 2025-02-25T02:30:28,875 running bdist_wheel 2025-02-25T02:30:29,009 running build 2025-02-25T02:30:29,010 running build_py 2025-02-25T02:30:29,040 creating build/lib/rxngraphormer 2025-02-25T02:30:29,042 copying rxngraphormer/ext_feat.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,045 copying rxngraphormer/eval.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,048 copying rxngraphormer/train.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,052 copying rxngraphormer/layer.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,055 copying rxngraphormer/scheduler.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,057 copying rxngraphormer/model.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,060 copying rxngraphormer/data.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,063 copying rxngraphormer/__init__.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,065 copying rxngraphormer/utils.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,067 copying rxngraphormer/rxn_emb.py -> build/lib/rxngraphormer 2025-02-25T02:30:29,070 creating build/lib/rxngraphormer/midgen 2025-02-25T02:30:29,072 copying rxngraphormer/midgen/__init__.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:30:29,073 copying rxngraphormer/midgen/MechFinder.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:30:29,076 copying rxngraphormer/midgen/midmol.py -> build/lib/rxngraphormer/midgen 2025-02-25T02:30:29,079 creating build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,080 copying rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,083 copying rxngraphormer/midgen/LocalTemplate/__init__.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,085 copying rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,088 copying rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,091 creating build/lib/rxngraphormer/midgen/utils 2025-02-25T02:30:29,092 copying rxngraphormer/midgen/utils/__init__.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:30:29,093 copying rxngraphormer/midgen/utils/arrow_pushing.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:30:29,095 copying rxngraphormer/midgen/utils/utils.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:30:29,098 copying rxngraphormer/midgen/utils/criterions.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T02:30:29,101 creating build/lib/rxngraphormer/midgen/collections 2025-02-25T02:30:29,102 copying rxngraphormer/midgen/collections/__init__.py -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:30:29,108 copying rxngraphormer/midgen/collections/MT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:30:29,111 copying rxngraphormer/midgen/collections/LRT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T02:30:29,146 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-25T02:30:29,147 !! 2025-02-25T02:30:29,148 ******************************************************************************** 2025-02-25T02:30:29,148 Please avoid running ``setup.py`` directly. 2025-02-25T02:30:29,149 Instead, use pypa/build, pypa/installer or other 2025-02-25T02:30:29,149 standards-based tools. 2025-02-25T02:30:29,151 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-25T02:30:29,151 ******************************************************************************** 2025-02-25T02:30:29,152 !! 2025-02-25T02:30:29,153 self.initialize_options() 2025-02-25T02:30:29,176 installing to build/bdist.linux-armv7l/wheel 2025-02-25T02:30:29,176 running install 2025-02-25T02:30:29,201 running install_lib 2025-02-25T02:30:29,228 creating build/bdist.linux-armv7l/wheel 2025-02-25T02:30:29,231 creating build/bdist.linux-armv7l/wheel/rxngraphormer 2025-02-25T02:30:29,232 copying build/lib/rxngraphormer/ext_feat.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,235 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen 2025-02-25T02:30:29,236 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,238 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,241 copying build/lib/rxngraphormer/midgen/LocalTemplate/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,243 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,245 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T02:30:29,248 copying build/lib/rxngraphormer/midgen/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:30:29,250 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/utils 2025-02-25T02:30:29,251 copying build/lib/rxngraphormer/midgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:30:29,253 copying build/lib/rxngraphormer/midgen/utils/arrow_pushing.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:30:29,255 copying build/lib/rxngraphormer/midgen/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:30:29,258 copying build/lib/rxngraphormer/midgen/utils/criterions.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T02:30:29,260 copying build/lib/rxngraphormer/midgen/MechFinder.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:30:29,262 copying build/lib/rxngraphormer/midgen/midmol.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T02:30:29,265 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/collections 2025-02-25T02:30:29,266 copying build/lib/rxngraphormer/midgen/collections/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:30:29,268 copying build/lib/rxngraphormer/midgen/collections/MT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:30:29,270 copying build/lib/rxngraphormer/midgen/collections/LRT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T02:30:29,272 copying build/lib/rxngraphormer/eval.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,275 copying build/lib/rxngraphormer/train.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,278 copying build/lib/rxngraphormer/layer.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,282 copying build/lib/rxngraphormer/scheduler.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,283 copying build/lib/rxngraphormer/model.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,287 copying build/lib/rxngraphormer/data.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,290 copying build/lib/rxngraphormer/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,291 copying build/lib/rxngraphormer/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,294 copying build/lib/rxngraphormer/rxn_emb.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T02:30:29,296 running install_egg_info 2025-02-25T02:30:29,329 running egg_info 2025-02-25T02:30:29,357 writing rxngraphormer.egg-info/PKG-INFO 2025-02-25T02:30:29,362 writing dependency_links to rxngraphormer.egg-info/dependency_links.txt 2025-02-25T02:30:29,364 writing requirements to rxngraphormer.egg-info/requires.txt 2025-02-25T02:30:29,366 writing top-level names to rxngraphormer.egg-info/top_level.txt 2025-02-25T02:30:29,411 reading manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:30:29,415 reading manifest template 'MANIFEST.in' 2025-02-25T02:30:29,417 adding license file 'LICENSE' 2025-02-25T02:30:29,422 writing manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T02:30:29,424 Copying rxngraphormer.egg-info to build/bdist.linux-armv7l/wheel/./rxngraphormer-0.6.1-py3.11.egg-info 2025-02-25T02:30:29,439 running install_scripts 2025-02-25T02:30:29,484 creating build/bdist.linux-armv7l/wheel/rxngraphormer-0.6.1.dist-info/WHEEL 2025-02-25T02:30:29,486 creating '/tmp/pip-wheel-cr06vtyb/rxngraphormer-0.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-25T02:30:29,489 adding 'rxngraphormer/__init__.py' 2025-02-25T02:30:29,493 adding 'rxngraphormer/data.py' 2025-02-25T02:30:29,496 adding 'rxngraphormer/eval.py' 2025-02-25T02:30:29,497 adding 'rxngraphormer/ext_feat.py' 2025-02-25T02:30:29,501 adding 'rxngraphormer/layer.py' 2025-02-25T02:30:29,507 adding 'rxngraphormer/model.py' 2025-02-25T02:30:29,510 adding 'rxngraphormer/rxn_emb.py' 2025-02-25T02:30:29,511 adding 'rxngraphormer/scheduler.py' 2025-02-25T02:30:29,517 adding 'rxngraphormer/train.py' 2025-02-25T02:30:29,520 adding 'rxngraphormer/utils.py' 2025-02-25T02:30:29,523 adding 'rxngraphormer/midgen/MechFinder.py' 2025-02-25T02:30:29,524 adding 'rxngraphormer/midgen/__init__.py' 2025-02-25T02:30:29,526 adding 'rxngraphormer/midgen/midmol.py' 2025-02-25T02:30:29,528 adding 'rxngraphormer/midgen/LocalTemplate/__init__.py' 2025-02-25T02:30:29,529 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_extention.py' 2025-02-25T02:30:29,531 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_utils.py' 2025-02-25T02:30:29,534 adding 'rxngraphormer/midgen/LocalTemplate/template_extractor.py' 2025-02-25T02:30:29,538 adding 'rxngraphormer/midgen/collections/LRT_library.csv' 2025-02-25T02:30:29,540 adding 'rxngraphormer/midgen/collections/MT_library.csv' 2025-02-25T02:30:29,541 adding 'rxngraphormer/midgen/collections/__init__.py' 2025-02-25T02:30:29,542 adding 'rxngraphormer/midgen/utils/__init__.py' 2025-02-25T02:30:29,544 adding 'rxngraphormer/midgen/utils/arrow_pushing.py' 2025-02-25T02:30:29,545 adding 'rxngraphormer/midgen/utils/criterions.py' 2025-02-25T02:30:29,548 adding 'rxngraphormer/midgen/utils/utils.py' 2025-02-25T02:30:29,550 adding 'rxngraphormer-0.6.1.dist-info/LICENSE' 2025-02-25T02:30:29,551 adding 'rxngraphormer-0.6.1.dist-info/METADATA' 2025-02-25T02:30:29,552 adding 'rxngraphormer-0.6.1.dist-info/WHEEL' 2025-02-25T02:30:29,553 adding 'rxngraphormer-0.6.1.dist-info/top_level.txt' 2025-02-25T02:30:29,554 adding 'rxngraphormer-0.6.1.dist-info/RECORD' 2025-02-25T02:30:29,556 removing build/bdist.linux-armv7l/wheel 2025-02-25T02:30:29,675 Building wheel for rxngraphormer (setup.py): finished with status 'done' 2025-02-25T02:30:29,679 Created wheel for rxngraphormer: filename=rxngraphormer-0.6.1-py3-none-any.whl size=88506 sha256=52f906dcb87812247baab797a2eb1907dbf889f5a7fb4dec156fbee3f638a04c 2025-02-25T02:30:29,680 Stored in directory: /tmp/pip-ephem-wheel-cache-jii05_b6/wheels/c8/ba/d0/35c7024cf88ad282135e7c964d95341150a24b34b41defdb05 2025-02-25T02:30:29,692 Successfully built rxngraphormer 2025-02-25T02:30:29,698 Removed build tracker: '/tmp/pip-build-tracker-bmapvaro'