2025-02-25T03:36:31,816 Created temporary directory: /tmp/pip-build-tracker-vpkylwql 2025-02-25T03:36:31,818 Initialized build tracking at /tmp/pip-build-tracker-vpkylwql 2025-02-25T03:36:31,818 Created build tracker: /tmp/pip-build-tracker-vpkylwql 2025-02-25T03:36:31,819 Entered build tracker: /tmp/pip-build-tracker-vpkylwql 2025-02-25T03:36:31,819 Created temporary directory: /tmp/pip-wheel-bwrsey0_ 2025-02-25T03:36:31,823 Created temporary directory: /tmp/pip-ephem-wheel-cache-y3bkxl74 2025-02-25T03:36:31,868 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-25T03:36:31,871 2 location(s) to search for versions of soapy-st: 2025-02-25T03:36:31,871 * https://pypi.org/simple/soapy-st/ 2025-02-25T03:36:31,871 * https://www.piwheels.org/simple/soapy-st/ 2025-02-25T03:36:31,871 Fetching project page and analyzing links: https://pypi.org/simple/soapy-st/ 2025-02-25T03:36:31,872 Getting page https://pypi.org/simple/soapy-st/ 2025-02-25T03:36:31,874 Found index url https://pypi.org/simple/ 2025-02-25T03:36:32,092 Fetched page https://pypi.org/simple/soapy-st/ as application/vnd.pypi.simple.v1+json 2025-02-25T03:36:32,098 Found link https://files.pythonhosted.org/packages/26/ef/07d2cc6a416a2962d02658155c1a0ba11bfc0f294a28701a880888aadebf/SOAPy-st-0.1.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.0 2025-02-25T03:36:32,098 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a4/47/c919aacc1a29a1509890a939821621d8bfea16fc15efdd1b845830b3c0ea/SOAPy_st-0.1.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,099 Found link https://files.pythonhosted.org/packages/6a/c4/2aae67cff1af7affce1ecdf80fa2f0aeca0cc34c34d524f690d80c79662e/SOAPy-st-0.1.2.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.2 2025-02-25T03:36:32,100 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/f5/cc/585b624914621cbff914d1d73e94a392ad0631a17a55ef8b9025ff9d7bde/SOAPy_st-0.1.2-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,101 Found link https://files.pythonhosted.org/packages/14/bf/41fa18c6356fa85d7e53bc8f384c6169a613ff8074cd6fe26d9734bdb258/SOAPy-st-0.1.3.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.3 2025-02-25T03:36:32,101 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/01/76/0370ef54a91fc2dacec2581cdbe1cecef35f9880afd556ba974b92726b02/SOAPy_st-0.1.3-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,102 Found link https://files.pythonhosted.org/packages/44/90/046401a8b275c9ccefb48083c6b59ae71ea2146fac4f85ddf38e92dcbc48/SOAPy-st-0.1.4.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.4 2025-02-25T03:36:32,103 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a7/3a/827460d431b0d1718673606675e4bf23b17eaae4b26be66803c459a93228/SOAPy_st-0.1.4-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,104 Found link https://files.pythonhosted.org/packages/36/8c/aad31bbb5ad56da395c7761983c7425dd0fb7556d10d3d9b9491267717b2/SOAPy-st-0.1.5.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.5 2025-02-25T03:36:32,105 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/c9/d8/42a67874b6dae28b6fb7695a3ba9d8e876a2b979836c9ce5bc11542b7ce6/SOAPy_st-0.1.5-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,106 Found link https://files.pythonhosted.org/packages/b1/bc/b92228426416290c0fbf49acfe19da61a1d519170ba73f37a4d40abec2e0/SOAPy-st-0.1.6.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.6 2025-02-25T03:36:32,106 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/3b/75/d09025b4ebab5c67f5099748128897ac2f03fe137394ee68c266e271ddb5/SOAPy_st-0.1.6-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,107 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/1b/e2/988a827aec3aaec819c8ae2818c0c61dece530373490005a31f390559642/SOAPy_st-0.1.7-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,108 Found link https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.7 2025-02-25T03:36:32,109 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/2f/c1/0b0a8d7b79037c1676372acc5ce06a4b1dcc042b9626d3e5aca72486b21a/SOAPy_st-0.1.8-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,110 Found link https://files.pythonhosted.org/packages/45/7c/3466e5548b1b78fc48bc95a8c6494161eed6829b8b6c383290f08b8e7928/SOAPy_st-0.1.8.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.8 2025-02-25T03:36:32,110 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/ab/9a/91323cc4ff8c2275eaef296f45e04b1b1ac767861e18b6f9c105654906e1/SOAPy_st-0.1.9-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,111 Found link https://files.pythonhosted.org/packages/04/8f/2ef71dd322267cf1eb6d71b38c75621c56bb086963b551a0d91bffa767d9/SOAPy_st-0.1.9.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.9 2025-02-25T03:36:32,112 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/6c/9e/d1798f4aad6afc2259a26d2f172623a61b46188acc5dcb169fd45bbef38b/SOAPy_st-1.0.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,112 Found link https://files.pythonhosted.org/packages/be/93/336dabb8892d26d513222c78fa586c059fa1f47aa3a352a216bcd663462a/SOAPy_st-1.0.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 1.0.0 2025-02-25T03:36:32,113 Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/4b/35/75c584c5c90e01ae0735dea1aeceda9022e7a2f22cdde9fda3f854c41c12/SOAPy_st-1.0.1-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,114 Found link https://files.pythonhosted.org/packages/3a/8a/4501ee795f1ae2864d363560dbe2355106777ea162217820d8f08edcbe70/SOAPy_st-1.0.1.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 1.0.1 2025-02-25T03:36:32,115 Fetching project page and analyzing links: https://www.piwheels.org/simple/soapy-st/ 2025-02-25T03:36:32,116 Getting page https://www.piwheels.org/simple/soapy-st/ 2025-02-25T03:36:32,117 Found index url https://www.piwheels.org/simple/ 2025-02-25T03:36:32,291 Fetched page https://www.piwheels.org/simple/soapy-st/ as text/html 2025-02-25T03:36:32,293 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-1.0.0-py3-none-any.whl#sha256=8f010b2afe11289808fb7b923953ab8171268aac8f0099be829caf9c8a510b8b (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,294 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.9-py3-none-any.whl#sha256=7b8969129e28a0bf2c558b21fb2130974232e37ed310398e5e73d9b691398e18 (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,295 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.8-py3-none-any.whl#sha256=c1fb983304577e31d63e54f65b05881f4550388b457dfec56875ecc4ca45e3ae (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,295 Skipping link: No binaries permitted for soapy-st: https://www.piwheels.org/simple/soapy-st/SOAPy_st-0.1.7-py3-none-any.whl#sha256=47ef0b65f7e6470511a5ef5fd5fe2a052d619946cfd5235ced410e7a90a41e1e (from https://www.piwheels.org/simple/soapy-st/) (requires-python:>=3.9) 2025-02-25T03:36:32,296 Skipping link: not a file: https://www.piwheels.org/simple/soapy-st/ 2025-02-25T03:36:32,297 Skipping link: not a file: https://pypi.org/simple/soapy-st/ 2025-02-25T03:36:32,317 Given no hashes to check 1 links for project 'soapy-st': discarding no candidates 2025-02-25T03:36:32,319 Collecting soapy-st==1.0.1 2025-02-25T03:36:32,321 Created temporary directory: /tmp/pip-unpack-q03vp_0n 2025-02-25T03:36:32,460 Downloading SOAPy_st-1.0.1.tar.gz (218 kB) 2025-02-25T03:36:32,694 Added soapy-st==1.0.1 from https://files.pythonhosted.org/packages/3a/8a/4501ee795f1ae2864d363560dbe2355106777ea162217820d8f08edcbe70/SOAPy_st-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-vpkylwql' 2025-02-25T03:36:32,696 Running setup.py (path:/tmp/pip-wheel-bwrsey0_/soapy-st_338f69e412e04d949a957d2b4c64ad3f/setup.py) egg_info for package soapy-st 2025-02-25T03:36:32,697 Created temporary directory: /tmp/pip-pip-egg-info-g_ioaqic 2025-02-25T03:36:32,697 Preparing metadata (setup.py): started 2025-02-25T03:36:32,698 Running command python setup.py egg_info 2025-02-25T03:36:33,255 /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-bwrsey0_/soapy-st_338f69e412e04d949a957d2b4c64ad3f/Readme.md' cannot be found 2025-02-25T03:36:33,255 return '\n'.join( 2025-02-25T03:36:33,837 running egg_info 2025-02-25T03:36:33,864 creating /tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info 2025-02-25T03:36:33,865 writing /tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/PKG-INFO 2025-02-25T03:36:33,868 writing dependency_links to /tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/dependency_links.txt 2025-02-25T03:36:33,871 writing requirements to /tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/requires.txt 2025-02-25T03:36:33,872 writing top-level names to /tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/top_level.txt 2025-02-25T03:36:33,873 writing manifest file '/tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/SOURCES.txt' 2025-02-25T03:36:33,969 reading manifest file '/tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/SOURCES.txt' 2025-02-25T03:36:33,971 reading manifest template 'MANIFEST.in' 2025-02-25T03:36:33,973 adding license file 'LICENSE.md' 2025-02-25T03:36:33,977 writing manifest file '/tmp/pip-pip-egg-info-g_ioaqic/SOAPy_st.egg-info/SOURCES.txt' 2025-02-25T03:36:34,087 Preparing metadata (setup.py): finished with status 'done' 2025-02-25T03:36:34,091 Source in /tmp/pip-wheel-bwrsey0_/soapy-st_338f69e412e04d949a957d2b4c64ad3f has version 1.0.1, which satisfies requirement soapy-st==1.0.1 from https://files.pythonhosted.org/packages/3a/8a/4501ee795f1ae2864d363560dbe2355106777ea162217820d8f08edcbe70/SOAPy_st-1.0.1.tar.gz 2025-02-25T03:36:34,093 Removed soapy-st==1.0.1 from https://files.pythonhosted.org/packages/3a/8a/4501ee795f1ae2864d363560dbe2355106777ea162217820d8f08edcbe70/SOAPy_st-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-vpkylwql' 2025-02-25T03:36:34,104 Created temporary directory: /tmp/pip-unpack-s0x0a6hi 2025-02-25T03:36:34,106 Created temporary directory: /tmp/pip-unpack-8e4pr7k6 2025-02-25T03:36:34,106 Building wheels for collected packages: soapy-st 2025-02-25T03:36:34,111 Created temporary directory: /tmp/pip-wheel-pn41lbdk 2025-02-25T03:36:34,112 Building wheel for soapy-st (setup.py): started 2025-02-25T03:36:34,113 Destination directory: /tmp/pip-wheel-pn41lbdk 2025-02-25T03:36:34,113 Running command python setup.py bdist_wheel 2025-02-25T03:36:34,682 /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-bwrsey0_/soapy-st_338f69e412e04d949a957d2b4c64ad3f/Readme.md' cannot be found 2025-02-25T03:36:34,683 return '\n'.join( 2025-02-25T03:36:35,240 running bdist_wheel 2025-02-25T03:36:35,373 running build 2025-02-25T03:36:35,374 running build_py 2025-02-25T03:36:35,404 creating build/lib/SOAPy_st 2025-02-25T03:36:35,406 copying SOAPy_st/utils.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,408 copying SOAPy_st/_compat.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,410 copying SOAPy_st/_metadata.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,412 copying SOAPy_st/_docs.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,414 copying SOAPy_st/_settings.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,416 copying SOAPy_st/__init__.py -> build/lib/SOAPy_st 2025-02-25T03:36:35,418 creating build/lib/SOAPy_st/pp 2025-02-25T03:36:35,419 copying SOAPy_st/pp/utils.py -> build/lib/SOAPy_st/pp 2025-02-25T03:36:35,422 copying SOAPy_st/pp/build_network.py -> build/lib/SOAPy_st/pp 2025-02-25T03:36:35,424 copying SOAPy_st/pp/all2adata.py -> build/lib/SOAPy_st/pp 2025-02-25T03:36:35,427 copying SOAPy_st/pp/__init__.py -> build/lib/SOAPy_st/pp 2025-02-25T03:36:35,429 creating build/lib/SOAPy_st/pl 2025-02-25T03:36:35,430 copying SOAPy_st/pl/utils.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,433 copying SOAPy_st/pl/_show.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,435 copying SOAPy_st/pl/_color.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,437 copying SOAPy_st/pl/_chord.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,439 copying SOAPy_st/pl/_niche.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,442 copying SOAPy_st/pl/_ccc.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,445 copying SOAPy_st/pl/_tendency.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,447 copying SOAPy_st/pl/_neighborhood.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,449 copying SOAPy_st/pl/_tensor.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,452 copying SOAPy_st/pl/_heatmap.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,454 copying SOAPy_st/pl/__init__.py -> build/lib/SOAPy_st/pl 2025-02-25T03:36:35,457 creating build/lib/SOAPy_st/tl 2025-02-25T03:36:35,458 copying SOAPy_st/tl/utils.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,460 copying SOAPy_st/tl/_interaction.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,463 copying SOAPy_st/tl/_ccc.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,466 copying SOAPy_st/tl/_mask.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,469 copying SOAPy_st/tl/_domain.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,472 copying SOAPy_st/tl/_tendency.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,475 copying SOAPy_st/tl/_var_genes.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,477 copying SOAPy_st/tl/_tensor.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,480 copying SOAPy_st/tl/__init__.py -> build/lib/SOAPy_st/tl 2025-02-25T03:36:35,483 creating build/lib/SOAPy_st/tl/other_package_without_pip 2025-02-25T03:36:35,484 copying SOAPy_st/tl/other_package_without_pip/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip 2025-02-25T03:36:35,487 creating build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,488 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,491 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,493 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,495 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,497 copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,500 creating build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,501 copying SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,504 copying SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,507 copying SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,509 copying SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,511 copying SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,513 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-25T03:36:35,515 copying SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-25T03:36:35,517 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,518 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,520 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,522 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,524 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,526 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,528 copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,531 creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,532 copying SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,535 copying SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,536 running egg_info 2025-02-25T03:36:35,566 writing SOAPy_st.egg-info/PKG-INFO 2025-02-25T03:36:35,570 writing dependency_links to SOAPy_st.egg-info/dependency_links.txt 2025-02-25T03:36:35,572 writing requirements to SOAPy_st.egg-info/requires.txt 2025-02-25T03:36:35,573 writing top-level names to SOAPy_st.egg-info/top_level.txt 2025-02-25T03:36:35,611 reading manifest file 'SOAPy_st.egg-info/SOURCES.txt' 2025-02-25T03:36:35,616 reading manifest template 'MANIFEST.in' 2025-02-25T03:36:35,618 adding license file 'LICENSE.md' 2025-02-25T03:36:35,623 writing manifest file 'SOAPy_st.egg-info/SOURCES.txt' 2025-02-25T03:36:35,625 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SOAPy_st.tl.datasets' is absent from the `packages` configuration. 2025-02-25T03:36:35,626 !! 2025-02-25T03:36:35,627 ******************************************************************************** 2025-02-25T03:36:35,628 ############################ 2025-02-25T03:36:35,628 # Package would be ignored # 2025-02-25T03:36:35,629 ############################ 2025-02-25T03:36:35,630 Python recognizes 'SOAPy_st.tl.datasets' as an importable package[^1], 2025-02-25T03:36:35,631 but it is absent from setuptools' `packages` configuration. 2025-02-25T03:36:35,632 This leads to an ambiguous overall configuration. If you want to distribute this 2025-02-25T03:36:35,633 package, please make sure that 'SOAPy_st.tl.datasets' is explicitly added 2025-02-25T03:36:35,634 to the `packages` configuration field. 2025-02-25T03:36:35,635 Alternatively, you can also rely on setuptools' discovery methods 2025-02-25T03:36:35,636 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-02-25T03:36:35,636 instead of `find_packages(...)`/`find:`). 2025-02-25T03:36:35,637 You can read more about "package discovery" on setuptools documentation page: 2025-02-25T03:36:35,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-02-25T03:36:35,639 If you don't want 'SOAPy_st.tl.datasets' to be distributed and are 2025-02-25T03:36:35,641 already explicitly excluding 'SOAPy_st.tl.datasets' via 2025-02-25T03:36:35,644 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-02-25T03:36:35,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-02-25T03:36:35,645 combination with a more fine grained `package-data` configuration. 2025-02-25T03:36:35,646 You can read more about "package data files" on setuptools documentation page: 2025-02-25T03:36:35,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-02-25T03:36:35,648 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-02-25T03:36:35,650 even if it does not contain any `.py` files. 2025-02-25T03:36:35,651 On the other hand, currently there is no concept of package data 2025-02-25T03:36:35,652 directory, all directories are treated like packages. 2025-02-25T03:36:35,653 ******************************************************************************** 2025-02-25T03:36:35,654 !! 2025-02-25T03:36:35,655 check.warn(importable) 2025-02-25T03:36:35,656 creating build/lib/SOAPy_st/tl/datasets 2025-02-25T03:36:35,656 copying SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets 2025-02-25T03:36:35,657 copying SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets 2025-02-25T03:36:35,688 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-25T03:36:35,689 !! 2025-02-25T03:36:35,690 ******************************************************************************** 2025-02-25T03:36:35,691 Please avoid running ``setup.py`` directly. 2025-02-25T03:36:35,691 Instead, use pypa/build, pypa/installer or other 2025-02-25T03:36:35,692 standards-based tools. 2025-02-25T03:36:35,693 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-25T03:36:35,694 ******************************************************************************** 2025-02-25T03:36:35,695 !! 2025-02-25T03:36:35,696 self.initialize_options() 2025-02-25T03:36:35,717 installing to build/bdist.linux-armv7l/wheel 2025-02-25T03:36:35,718 running install 2025-02-25T03:36:35,744 running install_lib 2025-02-25T03:36:35,771 creating build/bdist.linux-armv7l/wheel 2025-02-25T03:36:35,774 creating build/bdist.linux-armv7l/wheel/SOAPy_st 2025-02-25T03:36:35,775 copying build/lib/SOAPy_st/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,778 copying build/lib/SOAPy_st/_compat.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,781 creating build/bdist.linux-armv7l/wheel/SOAPy_st/pp 2025-02-25T03:36:35,783 copying build/lib/SOAPy_st/pp/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-25T03:36:35,785 copying build/lib/SOAPy_st/pp/build_network.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-25T03:36:35,788 copying build/lib/SOAPy_st/pp/all2adata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-25T03:36:35,790 copying build/lib/SOAPy_st/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp 2025-02-25T03:36:35,792 copying build/lib/SOAPy_st/_metadata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,794 copying build/lib/SOAPy_st/_docs.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,797 creating build/bdist.linux-armv7l/wheel/SOAPy_st/pl 2025-02-25T03:36:35,798 copying build/lib/SOAPy_st/pl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,801 copying build/lib/SOAPy_st/pl/_show.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,803 copying build/lib/SOAPy_st/pl/_color.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,810 copying build/lib/SOAPy_st/pl/_chord.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,812 copying build/lib/SOAPy_st/pl/_niche.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,815 copying build/lib/SOAPy_st/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,818 copying build/lib/SOAPy_st/pl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,820 copying build/lib/SOAPy_st/pl/_neighborhood.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,823 copying build/lib/SOAPy_st/pl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,826 copying build/lib/SOAPy_st/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,828 copying build/lib/SOAPy_st/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl 2025-02-25T03:36:35,831 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl 2025-02-25T03:36:35,832 copying build/lib/SOAPy_st/tl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,835 copying build/lib/SOAPy_st/tl/_interaction.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,838 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip 2025-02-25T03:36:35,840 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,841 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,844 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,845 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,848 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,849 copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG 2025-02-25T03:36:35,852 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,853 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,855 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,858 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,860 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,862 copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST 2025-02-25T03:36:35,865 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit 2025-02-25T03:36:35,867 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,868 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,870 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,872 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,873 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,875 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,877 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils 2025-02-25T03:36:35,879 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,881 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,883 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools 2025-02-25T03:36:35,885 copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit 2025-02-25T03:36:35,887 copying build/lib/SOAPy_st/tl/other_package_without_pip/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip 2025-02-25T03:36:35,888 copying build/lib/SOAPy_st/tl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,891 copying build/lib/SOAPy_st/tl/_mask.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,894 copying build/lib/SOAPy_st/tl/_domain.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,896 copying build/lib/SOAPy_st/tl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,899 copying build/lib/SOAPy_st/tl/_var_genes.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,901 copying build/lib/SOAPy_st/tl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,904 creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/datasets 2025-02-25T03:36:35,906 copying build/lib/SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets 2025-02-25T03:36:35,915 copying build/lib/SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets 2025-02-25T03:36:35,924 copying build/lib/SOAPy_st/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl 2025-02-25T03:36:35,926 copying build/lib/SOAPy_st/_settings.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,929 copying build/lib/SOAPy_st/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st 2025-02-25T03:36:35,930 running install_egg_info 2025-02-25T03:36:35,964 Copying SOAPy_st.egg-info to build/bdist.linux-armv7l/wheel/./SOAPy_st-1.0.1-py3.11.egg-info 2025-02-25T03:36:35,975 running install_scripts 2025-02-25T03:36:35,995 creating build/bdist.linux-armv7l/wheel/SOAPy_st-1.0.1.dist-info/WHEEL 2025-02-25T03:36:35,998 creating '/tmp/pip-wheel-pn41lbdk/SOAPy_st-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-25T03:36:36,000 adding 'SOAPy_st/__init__.py' 2025-02-25T03:36:36,002 adding 'SOAPy_st/_compat.py' 2025-02-25T03:36:36,003 adding 'SOAPy_st/_docs.py' 2025-02-25T03:36:36,004 adding 'SOAPy_st/_metadata.py' 2025-02-25T03:36:36,007 adding 'SOAPy_st/_settings.py' 2025-02-25T03:36:36,008 adding 'SOAPy_st/utils.py' 2025-02-25T03:36:36,010 adding 'SOAPy_st/pl/__init__.py' 2025-02-25T03:36:36,013 adding 'SOAPy_st/pl/_ccc.py' 2025-02-25T03:36:36,015 adding 'SOAPy_st/pl/_chord.py' 2025-02-25T03:36:36,017 adding 'SOAPy_st/pl/_color.py' 2025-02-25T03:36:36,018 adding 'SOAPy_st/pl/_heatmap.py' 2025-02-25T03:36:36,020 adding 'SOAPy_st/pl/_neighborhood.py' 2025-02-25T03:36:36,022 adding 'SOAPy_st/pl/_niche.py' 2025-02-25T03:36:36,024 adding 'SOAPy_st/pl/_show.py' 2025-02-25T03:36:36,026 adding 'SOAPy_st/pl/_tendency.py' 2025-02-25T03:36:36,028 adding 'SOAPy_st/pl/_tensor.py' 2025-02-25T03:36:36,029 adding 'SOAPy_st/pl/utils.py' 2025-02-25T03:36:36,031 adding 'SOAPy_st/pp/__init__.py' 2025-02-25T03:36:36,034 adding 'SOAPy_st/pp/all2adata.py' 2025-02-25T03:36:36,035 adding 'SOAPy_st/pp/build_network.py' 2025-02-25T03:36:36,037 adding 'SOAPy_st/pp/utils.py' 2025-02-25T03:36:36,038 adding 'SOAPy_st/tl/__init__.py' 2025-02-25T03:36:36,042 adding 'SOAPy_st/tl/_ccc.py' 2025-02-25T03:36:36,045 adding 'SOAPy_st/tl/_domain.py' 2025-02-25T03:36:36,047 adding 'SOAPy_st/tl/_interaction.py' 2025-02-25T03:36:36,049 adding 'SOAPy_st/tl/_mask.py' 2025-02-25T03:36:36,053 adding 'SOAPy_st/tl/_tendency.py' 2025-02-25T03:36:36,055 adding 'SOAPy_st/tl/_tensor.py' 2025-02-25T03:36:36,057 adding 'SOAPy_st/tl/_var_genes.py' 2025-02-25T03:36:36,058 adding 'SOAPy_st/tl/utils.py' 2025-02-25T03:36:36,092 adding 'SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv' 2025-02-25T03:36:36,128 adding 'SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv' 2025-02-25T03:36:36,133 adding 'SOAPy_st/tl/other_package_without_pip/__init__.py' 2025-02-25T03:36:36,135 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py' 2025-02-25T03:36:36,137 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py' 2025-02-25T03:36:36,138 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/model.py' 2025-02-25T03:36:36,140 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py' 2025-02-25T03:36:36,142 adding 'SOAPy_st/tl/other_package_without_pip/GraphST/utils.py' 2025-02-25T03:36:36,144 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py' 2025-02-25T03:36:36,145 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py' 2025-02-25T03:36:36,147 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py' 2025-02-25T03:36:36,148 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py' 2025-02-25T03:36:36,150 adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py' 2025-02-25T03:36:36,152 adding 'SOAPy_st/tl/other_package_without_pip/scanit/__init__.py' 2025-02-25T03:36:36,154 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py' 2025-02-25T03:36:36,155 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py' 2025-02-25T03:36:36,157 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py' 2025-02-25T03:36:36,158 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py' 2025-02-25T03:36:36,159 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py' 2025-02-25T03:36:36,161 adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py' 2025-02-25T03:36:36,162 adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py' 2025-02-25T03:36:36,164 adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py' 2025-02-25T03:36:36,171 adding 'SOAPy_st-1.0.1.dist-info/LICENSE.md' 2025-02-25T03:36:36,173 adding 'SOAPy_st-1.0.1.dist-info/METADATA' 2025-02-25T03:36:36,173 adding 'SOAPy_st-1.0.1.dist-info/WHEEL' 2025-02-25T03:36:36,174 adding 'SOAPy_st-1.0.1.dist-info/top_level.txt' 2025-02-25T03:36:36,176 adding 'SOAPy_st-1.0.1.dist-info/RECORD' 2025-02-25T03:36:36,182 removing build/bdist.linux-armv7l/wheel 2025-02-25T03:36:36,309 Building wheel for soapy-st (setup.py): finished with status 'done' 2025-02-25T03:36:36,314 Created wheel for soapy-st: filename=SOAPy_st-1.0.1-py3-none-any.whl size=242859 sha256=44aaee858583b05266e3d35d965032b41c1937ddd7a3779deadc6e2bbb233e22 2025-02-25T03:36:36,315 Stored in directory: /tmp/pip-ephem-wheel-cache-y3bkxl74/wheels/29/d7/32/a9ea7ad258526c5b7bd20d0ff6283a6f1c87c2fe119ba3e672 2025-02-25T03:36:36,328 Successfully built soapy-st 2025-02-25T03:36:36,338 Removed build tracker: '/tmp/pip-build-tracker-vpkylwql'