2025-02-25T05:47:39,004 Created temporary directory: /tmp/pip-build-tracker-wjdmagxe 2025-02-25T05:47:39,006 Initialized build tracking at /tmp/pip-build-tracker-wjdmagxe 2025-02-25T05:47:39,006 Created build tracker: /tmp/pip-build-tracker-wjdmagxe 2025-02-25T05:47:39,007 Entered build tracker: /tmp/pip-build-tracker-wjdmagxe 2025-02-25T05:47:39,007 Created temporary directory: /tmp/pip-wheel-eh71apgh 2025-02-25T05:47:39,012 Created temporary directory: /tmp/pip-ephem-wheel-cache-bi0icuma 2025-02-25T05:47:39,054 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-25T05:47:39,057 2 location(s) to search for versions of rxngraphormer: 2025-02-25T05:47:39,057 * https://pypi.org/simple/rxngraphormer/ 2025-02-25T05:47:39,057 * https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T05:47:39,058 Fetching project page and analyzing links: https://pypi.org/simple/rxngraphormer/ 2025-02-25T05:47:39,059 Getting page https://pypi.org/simple/rxngraphormer/ 2025-02-25T05:47:39,060 Found index url https://pypi.org/simple/ 2025-02-25T05:47:39,275 Fetched page https://pypi.org/simple/rxngraphormer/ as application/vnd.pypi.simple.v1+json 2025-02-25T05:47:39,277 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/1d/f1/20631b70c4c8da6d27c035dc443f1010c138e6288891c713933c7a5121d0/rxngraphormer-0.6.0-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T05:47:39,278 Found link https://files.pythonhosted.org/packages/55/7d/82bc9db55cd18f9bd3ebc83f8880bc9823751a4ba75ec8f740e0ef019644/rxngraphormer-0.6.0.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.0 2025-02-25T05:47:39,278 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/13/42/2b13e5e64e726b03a0b8a627ccdb24368cf9928eb39879f483fde017afa4/rxngraphormer-0.6.1-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T05:47:39,279 Found link https://files.pythonhosted.org/packages/47/67/206d2d50ec68feb3da75507665850a6bdf0e885b708235f8f25b4915e229/rxngraphormer-0.6.1.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.1 2025-02-25T05:47:39,279 Skipping link: No binaries permitted for rxngraphormer: https://files.pythonhosted.org/packages/a0/89/5098442d4188ad3e87e525ff317f588c40155bcd6772fdb9399652ce078c/rxngraphormer-0.6.2-py3-none-any.whl (from https://pypi.org/simple/rxngraphormer/) 2025-02-25T05:47:39,280 Found link https://files.pythonhosted.org/packages/1d/52/d8644aceb9f207bc78d7cd3e321cea665cfc1252e1abd3975222f12b75a2/rxngraphormer-0.6.2.tar.gz (from https://pypi.org/simple/rxngraphormer/), version: 0.6.2 2025-02-25T05:47:39,281 Fetching project page and analyzing links: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T05:47:39,281 Getting page https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T05:47:39,283 Found index url https://www.piwheels.org/simple/ 2025-02-25T05:47:39,442 Fetched page https://www.piwheels.org/simple/rxngraphormer/ as text/html 2025-02-25T05:47:39,444 Skipping link: No binaries permitted for rxngraphormer: https://www.piwheels.org/simple/rxngraphormer/rxngraphormer-0.6.1-py3-none-any.whl#sha256=52f906dcb87812247baab797a2eb1907dbf889f5a7fb4dec156fbee3f638a04c (from https://www.piwheels.org/simple/rxngraphormer/) 2025-02-25T05:47:39,445 Skipping link: No binaries permitted for rxngraphormer: https://www.piwheels.org/simple/rxngraphormer/rxngraphormer-0.6.0-py3-none-any.whl#sha256=769074ef2fefbe825c4e5a0b47c8b13c914173e4db2e8a7fe7344b1f0db4bc1f (from https://www.piwheels.org/simple/rxngraphormer/) 2025-02-25T05:47:39,445 Skipping link: not a file: https://www.piwheels.org/simple/rxngraphormer/ 2025-02-25T05:47:39,446 Skipping link: not a file: https://pypi.org/simple/rxngraphormer/ 2025-02-25T05:47:39,463 Given no hashes to check 1 links for project 'rxngraphormer': discarding no candidates 2025-02-25T05:47:39,465 Collecting rxngraphormer==0.6.2 2025-02-25T05:47:39,468 Created temporary directory: /tmp/pip-unpack-oybyffbc 2025-02-25T05:47:39,695 Downloading rxngraphormer-0.6.2.tar.gz (84 kB) 2025-02-25T05:47:42,065 Added rxngraphormer==0.6.2 from https://files.pythonhosted.org/packages/1d/52/d8644aceb9f207bc78d7cd3e321cea665cfc1252e1abd3975222f12b75a2/rxngraphormer-0.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-wjdmagxe' 2025-02-25T05:47:42,068 Running setup.py (path:/tmp/pip-wheel-eh71apgh/rxngraphormer_74e96f8d080d4cb892278c57a9efdab3/setup.py) egg_info for package rxngraphormer 2025-02-25T05:47:42,069 Created temporary directory: /tmp/pip-pip-egg-info-__ohn44j 2025-02-25T05:47:42,069 Preparing metadata (setup.py): started 2025-02-25T05:47:42,070 Running command python setup.py egg_info 2025-02-25T05:47:42,638 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T05:47:42,638 warnings.warn(msg) 2025-02-25T05:47:43,193 running egg_info 2025-02-25T05:47:43,220 creating /tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info 2025-02-25T05:47:43,221 writing /tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/PKG-INFO 2025-02-25T05:47:43,226 writing dependency_links to /tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/dependency_links.txt 2025-02-25T05:47:43,229 writing requirements to /tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/requires.txt 2025-02-25T05:47:43,230 writing top-level names to /tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/top_level.txt 2025-02-25T05:47:43,232 writing manifest file '/tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T05:47:43,326 reading manifest file '/tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T05:47:43,328 reading manifest template 'MANIFEST.in' 2025-02-25T05:47:43,329 adding license file 'LICENSE' 2025-02-25T05:47:43,332 writing manifest file '/tmp/pip-pip-egg-info-__ohn44j/rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T05:47:43,441 Preparing metadata (setup.py): finished with status 'done' 2025-02-25T05:47:43,446 Source in /tmp/pip-wheel-eh71apgh/rxngraphormer_74e96f8d080d4cb892278c57a9efdab3 has version 0.6.2, which satisfies requirement rxngraphormer==0.6.2 from https://files.pythonhosted.org/packages/1d/52/d8644aceb9f207bc78d7cd3e321cea665cfc1252e1abd3975222f12b75a2/rxngraphormer-0.6.2.tar.gz 2025-02-25T05:47:43,447 Removed rxngraphormer==0.6.2 from https://files.pythonhosted.org/packages/1d/52/d8644aceb9f207bc78d7cd3e321cea665cfc1252e1abd3975222f12b75a2/rxngraphormer-0.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-wjdmagxe' 2025-02-25T05:47:43,466 Created temporary directory: /tmp/pip-unpack-cdpkrxp3 2025-02-25T05:47:43,467 Created temporary directory: /tmp/pip-unpack-my0yunq1 2025-02-25T05:47:43,468 Building wheels for collected packages: rxngraphormer 2025-02-25T05:47:43,472 Created temporary directory: /tmp/pip-wheel-9xuktxns 2025-02-25T05:47:43,473 Building wheel for rxngraphormer (setup.py): started 2025-02-25T05:47:43,475 Destination directory: /tmp/pip-wheel-9xuktxns 2025-02-25T05:47:43,475 Running command python setup.py bdist_wheel 2025-02-25T05:47:44,007 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'install_package_data' 2025-02-25T05:47:44,008 warnings.warn(msg) 2025-02-25T05:47:44,520 running bdist_wheel 2025-02-25T05:47:44,652 running build 2025-02-25T05:47:44,652 running build_py 2025-02-25T05:47:44,685 creating build/lib/rxngraphormer 2025-02-25T05:47:44,687 copying rxngraphormer/model.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,691 copying rxngraphormer/eval.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,694 copying rxngraphormer/ext_feat.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,696 copying rxngraphormer/train.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,701 copying rxngraphormer/data.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,705 copying rxngraphormer/layer.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,708 copying rxngraphormer/rxn_emb.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,711 copying rxngraphormer/utils.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,714 copying rxngraphormer/__init__.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,715 copying rxngraphormer/scheduler.py -> build/lib/rxngraphormer 2025-02-25T05:47:44,719 creating build/lib/rxngraphormer/midgen 2025-02-25T05:47:44,720 copying rxngraphormer/midgen/MechFinder.py -> build/lib/rxngraphormer/midgen 2025-02-25T05:47:44,723 copying rxngraphormer/midgen/midmol.py -> build/lib/rxngraphormer/midgen 2025-02-25T05:47:44,725 copying rxngraphormer/midgen/__init__.py -> build/lib/rxngraphormer/midgen 2025-02-25T05:47:44,727 creating build/lib/rxngraphormer/midgen/collections 2025-02-25T05:47:44,728 copying rxngraphormer/midgen/collections/__init__.py -> build/lib/rxngraphormer/midgen/collections 2025-02-25T05:47:44,730 creating build/lib/rxngraphormer/midgen/utils 2025-02-25T05:47:44,731 copying rxngraphormer/midgen/utils/arrow_pushing.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T05:47:44,734 copying rxngraphormer/midgen/utils/criterions.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T05:47:44,736 copying rxngraphormer/midgen/utils/utils.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T05:47:44,738 copying rxngraphormer/midgen/utils/__init__.py -> build/lib/rxngraphormer/midgen/utils 2025-02-25T05:47:44,740 creating build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,742 copying rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,744 copying rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,747 copying rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,750 copying rxngraphormer/midgen/LocalTemplate/__init__.py -> build/lib/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,756 copying rxngraphormer/midgen/collections/LRT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T05:47:44,760 copying rxngraphormer/midgen/collections/MT_library.csv -> build/lib/rxngraphormer/midgen/collections 2025-02-25T05:47:44,796 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-25T05:47:44,796 !! 2025-02-25T05:47:44,798 ******************************************************************************** 2025-02-25T05:47:44,798 Please avoid running ``setup.py`` directly. 2025-02-25T05:47:44,799 Instead, use pypa/build, pypa/installer or other 2025-02-25T05:47:44,800 standards-based tools. 2025-02-25T05:47:44,801 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-25T05:47:44,801 ******************************************************************************** 2025-02-25T05:47:44,802 !! 2025-02-25T05:47:44,803 self.initialize_options() 2025-02-25T05:47:44,824 installing to build/bdist.linux-armv7l/wheel 2025-02-25T05:47:44,825 running install 2025-02-25T05:47:44,850 running install_lib 2025-02-25T05:47:44,877 creating build/bdist.linux-armv7l/wheel 2025-02-25T05:47:44,879 creating build/bdist.linux-armv7l/wheel/rxngraphormer 2025-02-25T05:47:44,880 copying build/lib/rxngraphormer/model.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,884 copying build/lib/rxngraphormer/eval.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,886 copying build/lib/rxngraphormer/ext_feat.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,888 copying build/lib/rxngraphormer/train.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,892 copying build/lib/rxngraphormer/data.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,895 copying build/lib/rxngraphormer/layer.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,898 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen 2025-02-25T05:47:44,900 copying build/lib/rxngraphormer/midgen/MechFinder.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T05:47:44,902 copying build/lib/rxngraphormer/midgen/midmol.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T05:47:44,905 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/collections 2025-02-25T05:47:44,906 copying build/lib/rxngraphormer/midgen/collections/LRT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T05:47:44,909 copying build/lib/rxngraphormer/midgen/collections/MT_library.csv -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T05:47:44,911 copying build/lib/rxngraphormer/midgen/collections/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/collections 2025-02-25T05:47:44,914 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/utils 2025-02-25T05:47:44,915 copying build/lib/rxngraphormer/midgen/utils/arrow_pushing.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T05:47:44,917 copying build/lib/rxngraphormer/midgen/utils/criterions.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T05:47:44,919 copying build/lib/rxngraphormer/midgen/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T05:47:44,922 copying build/lib/rxngraphormer/midgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/utils 2025-02-25T05:47:44,924 creating build/bdist.linux-armv7l/wheel/rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,925 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_extention.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,928 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extractor.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,930 copying build/lib/rxngraphormer/midgen/LocalTemplate/template_extract_utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,933 copying build/lib/rxngraphormer/midgen/LocalTemplate/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen/LocalTemplate 2025-02-25T05:47:44,934 copying build/lib/rxngraphormer/midgen/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer/midgen 2025-02-25T05:47:44,936 copying build/lib/rxngraphormer/rxn_emb.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,938 copying build/lib/rxngraphormer/utils.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,941 copying build/lib/rxngraphormer/__init__.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,942 copying build/lib/rxngraphormer/scheduler.py -> build/bdist.linux-armv7l/wheel/./rxngraphormer 2025-02-25T05:47:44,944 running install_egg_info 2025-02-25T05:47:44,976 running egg_info 2025-02-25T05:47:45,004 writing rxngraphormer.egg-info/PKG-INFO 2025-02-25T05:47:45,008 writing dependency_links to rxngraphormer.egg-info/dependency_links.txt 2025-02-25T05:47:45,011 writing requirements to rxngraphormer.egg-info/requires.txt 2025-02-25T05:47:45,012 writing top-level names to rxngraphormer.egg-info/top_level.txt 2025-02-25T05:47:45,049 reading manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T05:47:45,052 reading manifest template 'MANIFEST.in' 2025-02-25T05:47:45,054 adding license file 'LICENSE' 2025-02-25T05:47:45,057 writing manifest file 'rxngraphormer.egg-info/SOURCES.txt' 2025-02-25T05:47:45,059 Copying rxngraphormer.egg-info to build/bdist.linux-armv7l/wheel/./rxngraphormer-0.6.2-py3.11.egg-info 2025-02-25T05:47:45,070 running install_scripts 2025-02-25T05:47:45,110 creating build/bdist.linux-armv7l/wheel/rxngraphormer-0.6.2.dist-info/WHEEL 2025-02-25T05:47:45,114 creating '/tmp/pip-wheel-9xuktxns/rxngraphormer-0.6.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-25T05:47:45,116 adding 'rxngraphormer/__init__.py' 2025-02-25T05:47:45,121 adding 'rxngraphormer/data.py' 2025-02-25T05:47:45,124 adding 'rxngraphormer/eval.py' 2025-02-25T05:47:45,125 adding 'rxngraphormer/ext_feat.py' 2025-02-25T05:47:45,129 adding 'rxngraphormer/layer.py' 2025-02-25T05:47:45,136 adding 'rxngraphormer/model.py' 2025-02-25T05:47:45,138 adding 'rxngraphormer/rxn_emb.py' 2025-02-25T05:47:45,140 adding 'rxngraphormer/scheduler.py' 2025-02-25T05:47:45,146 adding 'rxngraphormer/train.py' 2025-02-25T05:47:45,149 adding 'rxngraphormer/utils.py' 2025-02-25T05:47:45,151 adding 'rxngraphormer/midgen/MechFinder.py' 2025-02-25T05:47:45,152 adding 'rxngraphormer/midgen/__init__.py' 2025-02-25T05:47:45,154 adding 'rxngraphormer/midgen/midmol.py' 2025-02-25T05:47:45,155 adding 'rxngraphormer/midgen/LocalTemplate/__init__.py' 2025-02-25T05:47:45,157 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_extention.py' 2025-02-25T05:47:45,159 adding 'rxngraphormer/midgen/LocalTemplate/template_extract_utils.py' 2025-02-25T05:47:45,162 adding 'rxngraphormer/midgen/LocalTemplate/template_extractor.py' 2025-02-25T05:47:45,165 adding 'rxngraphormer/midgen/collections/LRT_library.csv' 2025-02-25T05:47:45,167 adding 'rxngraphormer/midgen/collections/MT_library.csv' 2025-02-25T05:47:45,168 adding 'rxngraphormer/midgen/collections/__init__.py' 2025-02-25T05:47:45,170 adding 'rxngraphormer/midgen/utils/__init__.py' 2025-02-25T05:47:45,172 adding 'rxngraphormer/midgen/utils/arrow_pushing.py' 2025-02-25T05:47:45,173 adding 'rxngraphormer/midgen/utils/criterions.py' 2025-02-25T05:47:45,176 adding 'rxngraphormer/midgen/utils/utils.py' 2025-02-25T05:47:45,178 adding 'rxngraphormer-0.6.2.dist-info/LICENSE' 2025-02-25T05:47:45,179 adding 'rxngraphormer-0.6.2.dist-info/METADATA' 2025-02-25T05:47:45,180 adding 'rxngraphormer-0.6.2.dist-info/WHEEL' 2025-02-25T05:47:45,181 adding 'rxngraphormer-0.6.2.dist-info/top_level.txt' 2025-02-25T05:47:45,182 adding 'rxngraphormer-0.6.2.dist-info/RECORD' 2025-02-25T05:47:45,185 removing build/bdist.linux-armv7l/wheel 2025-02-25T05:47:45,305 Building wheel for rxngraphormer (setup.py): finished with status 'done' 2025-02-25T05:47:45,309 Created wheel for rxngraphormer: filename=rxngraphormer-0.6.2-py3-none-any.whl size=88507 sha256=1fb5499a98a42f58a3d663fbc15a643b737f698a5a80cb35946b2dafa216ec9e 2025-02-25T05:47:45,310 Stored in directory: /tmp/pip-ephem-wheel-cache-bi0icuma/wheels/2e/3b/92/2b951bb6ce6e46fb17ef0ec0c691c953cc44dafc2ad8eb49a2 2025-02-25T05:47:45,322 Successfully built rxngraphormer 2025-02-25T05:47:45,328 Removed build tracker: '/tmp/pip-build-tracker-wjdmagxe'