2025-02-25T16:46:45,098 Created temporary directory: /tmp/pip-build-tracker-3o2uqav4 2025-02-25T16:46:45,100 Initialized build tracking at /tmp/pip-build-tracker-3o2uqav4 2025-02-25T16:46:45,101 Created build tracker: /tmp/pip-build-tracker-3o2uqav4 2025-02-25T16:46:45,101 Entered build tracker: /tmp/pip-build-tracker-3o2uqav4 2025-02-25T16:46:45,102 Created temporary directory: /tmp/pip-wheel-5rwrijwf 2025-02-25T16:46:45,106 Created temporary directory: /tmp/pip-ephem-wheel-cache-crja9gwr 2025-02-25T16:46:45,152 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-02-25T16:46:45,154 2 location(s) to search for versions of fugassem: 2025-02-25T16:46:45,154 * https://pypi.org/simple/fugassem/ 2025-02-25T16:46:45,154 * https://www.piwheels.org/simple/fugassem/ 2025-02-25T16:46:45,155 Fetching project page and analyzing links: https://pypi.org/simple/fugassem/ 2025-02-25T16:46:45,156 Getting page https://pypi.org/simple/fugassem/ 2025-02-25T16:46:45,158 Found index url https://pypi.org/simple/ 2025-02-25T16:46:45,378 Fetched page https://pypi.org/simple/fugassem/ as application/vnd.pypi.simple.v1+json 2025-02-25T16:46:45,380 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/a8/11/3b98faf4d0ae86ca8b47e66542298131299e1a5690ed402c1fb2c9a7b6bd/fugassem-0.3.6-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2025-02-25T16:46:45,381 Found link https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.6 2025-02-25T16:46:45,382 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/93/25/7840c6ebe7659ff06284d715409e8803b74518d005c73d33f85866bca04e/fugassem-0.3.7-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2025-02-25T16:46:45,382 Found link https://files.pythonhosted.org/packages/f9/2a/52e61cf5786eb229696c36dabd987a6bfd784d21759e8b8cc13ee308e6f6/fugassem-0.3.7.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.7 2025-02-25T16:46:45,383 Fetching project page and analyzing links: https://www.piwheels.org/simple/fugassem/ 2025-02-25T16:46:45,384 Getting page https://www.piwheels.org/simple/fugassem/ 2025-02-25T16:46:45,385 Found index url https://www.piwheels.org/simple/ 2025-02-25T16:46:45,576 Fetched page https://www.piwheels.org/simple/fugassem/ as text/html 2025-02-25T16:46:45,578 Skipping link: No binaries permitted for fugassem: https://www.piwheels.org/simple/fugassem/fugassem-0.3.6-py3-none-any.whl#sha256=5b176b302bdf4675d168571673169dbcec7f4210357aba5f48e87b3afa11b74a (from https://www.piwheels.org/simple/fugassem/) 2025-02-25T16:46:45,578 Skipping link: not a file: https://www.piwheels.org/simple/fugassem/ 2025-02-25T16:46:45,579 Skipping link: not a file: https://pypi.org/simple/fugassem/ 2025-02-25T16:46:45,598 Given no hashes to check 1 links for project 'fugassem': discarding no candidates 2025-02-25T16:46:45,600 Collecting fugassem==0.3.7 2025-02-25T16:46:45,603 Created temporary directory: /tmp/pip-unpack-znidimt7 2025-02-25T16:46:45,827 Downloading fugassem-0.3.7.tar.gz (9.9 MB) 2025-02-25T16:46:48,403 Added fugassem==0.3.7 from https://files.pythonhosted.org/packages/f9/2a/52e61cf5786eb229696c36dabd987a6bfd784d21759e8b8cc13ee308e6f6/fugassem-0.3.7.tar.gz to build tracker '/tmp/pip-build-tracker-3o2uqav4' 2025-02-25T16:46:48,406 Running setup.py (path:/tmp/pip-wheel-5rwrijwf/fugassem_a1c091d8cb4e4f9f9684d71e1e75494f/setup.py) egg_info for package fugassem 2025-02-25T16:46:48,406 Created temporary directory: /tmp/pip-pip-egg-info-2koomr4i 2025-02-25T16:46:48,407 Preparing metadata (setup.py): started 2025-02-25T16:46:48,408 Running command python setup.py egg_info 2025-02-25T16:46:49,472 running egg_info 2025-02-25T16:46:49,503 creating /tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info 2025-02-25T16:46:49,504 writing /tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/PKG-INFO 2025-02-25T16:46:49,507 writing dependency_links to /tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/dependency_links.txt 2025-02-25T16:46:49,511 writing entry points to /tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/entry_points.txt 2025-02-25T16:46:49,513 writing top-level names to /tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/top_level.txt 2025-02-25T16:46:49,515 writing manifest file '/tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/SOURCES.txt' 2025-02-25T16:46:49,643 reading manifest file '/tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/SOURCES.txt' 2025-02-25T16:46:49,645 reading manifest template 'MANIFEST.in' 2025-02-25T16:46:49,667 adding license file 'LICENSE' 2025-02-25T16:46:49,673 writing manifest file '/tmp/pip-pip-egg-info-2koomr4i/fugassem.egg-info/SOURCES.txt' 2025-02-25T16:46:49,781 Preparing metadata (setup.py): finished with status 'done' 2025-02-25T16:46:49,784 Source in /tmp/pip-wheel-5rwrijwf/fugassem_a1c091d8cb4e4f9f9684d71e1e75494f has version 0.3.7, which satisfies requirement fugassem==0.3.7 from https://files.pythonhosted.org/packages/f9/2a/52e61cf5786eb229696c36dabd987a6bfd784d21759e8b8cc13ee308e6f6/fugassem-0.3.7.tar.gz 2025-02-25T16:46:49,785 Removed fugassem==0.3.7 from https://files.pythonhosted.org/packages/f9/2a/52e61cf5786eb229696c36dabd987a6bfd784d21759e8b8cc13ee308e6f6/fugassem-0.3.7.tar.gz from build tracker '/tmp/pip-build-tracker-3o2uqav4' 2025-02-25T16:46:49,789 Created temporary directory: /tmp/pip-unpack-8_pyrguh 2025-02-25T16:46:49,790 Created temporary directory: /tmp/pip-unpack-6pzvh44v 2025-02-25T16:46:49,791 Building wheels for collected packages: fugassem 2025-02-25T16:46:49,795 Created temporary directory: /tmp/pip-wheel-t0m477uh 2025-02-25T16:46:49,796 Building wheel for fugassem (setup.py): started 2025-02-25T16:46:49,797 Destination directory: /tmp/pip-wheel-t0m477uh 2025-02-25T16:46:49,797 Running command python setup.py bdist_wheel 2025-02-25T16:46:50,824 running bdist_wheel 2025-02-25T16:46:50,966 running build 2025-02-25T16:46:50,967 running build_py 2025-02-25T16:46:50,999 creating build/lib/fugassem 2025-02-25T16:46:51,001 copying fugassem/__init__.py -> build/lib/fugassem 2025-02-25T16:46:51,003 copying fugassem/fugassem.py -> build/lib/fugassem 2025-02-25T16:46:51,005 copying fugassem/utilities.py -> build/lib/fugassem 2025-02-25T16:46:51,008 copying fugassem/config.py -> build/lib/fugassem 2025-02-25T16:46:51,011 creating build/lib/fugassem/common 2025-02-25T16:46:51,013 copying fugassem/common/table2.py -> build/lib/fugassem/common 2025-02-25T16:46:51,016 copying fugassem/common/corrmp.py -> build/lib/fugassem/common 2025-02-25T16:46:51,018 copying fugassem/common/dictation.py -> build/lib/fugassem/common 2025-02-25T16:46:51,021 copying fugassem/common/table2_stats.py -> build/lib/fugassem/common 2025-02-25T16:46:51,023 copying fugassem/common/__init__.py -> build/lib/fugassem/common 2025-02-25T16:46:51,024 copying fugassem/common/transpose.py -> build/lib/fugassem/common 2025-02-25T16:46:51,026 copying fugassem/common/geneontology.py -> build/lib/fugassem/common 2025-02-25T16:46:51,029 copying fugassem/common/extract_feature_subset.py -> build/lib/fugassem/common 2025-02-25T16:46:51,031 copying fugassem/common/utils.py -> build/lib/fugassem/common 2025-02-25T16:46:51,033 copying fugassem/common/format_function.py -> build/lib/fugassem/common 2025-02-25T16:46:51,036 creating build/lib/fugassem/predict 2025-02-25T16:46:51,037 copying fugassem/predict/select_feature.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,039 copying fugassem/predict/__init__.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,041 copying fugassem/predict/predict_function.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,044 copying fugassem/predict/collect_ml_results.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,046 copying fugassem/predict/machine_learning.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,049 copying fugassem/predict/merged_prediction.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,051 copying fugassem/predict/prepare_nextlayer_ml.py -> build/lib/fugassem/predict 2025-02-25T16:46:51,054 creating build/lib/fugassem/preprocess 2025-02-25T16:46:51,055 copying fugassem/preprocess/collect_features.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,057 copying fugassem/preprocess/__init__.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,059 copying fugassem/preprocess/convert_coann.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,061 copying fugassem/preprocess/build_union_terms.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,063 copying fugassem/preprocess/split_taxa.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,066 copying fugassem/preprocess/refine_abunds.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,068 copying fugassem/preprocess/impute_nan.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,070 copying fugassem/preprocess/refine_anns.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,073 copying fugassem/preprocess/calculate_correlation.py -> build/lib/fugassem/preprocess 2025-02-25T16:46:51,076 creating build/lib/fugassem/tools 2025-02-25T16:46:51,077 copying fugassem/tools/gene_abundance.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,080 copying fugassem/tools/generate_annotation_input.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,083 copying fugassem/tools/gene_catalog_abundance.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,085 copying fugassem/tools/abundance_smoothing.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,088 copying fugassem/tools/prepare_annotation.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,091 copying fugassem/tools/collect_seqSimilarity_results.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,093 copying fugassem/tools/__init__.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,095 copying fugassem/tools/abundance_RPK.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,098 copying fugassem/tools/extract_feature_subset.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,101 copying fugassem/tools/prepare_contig.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,103 copying fugassem/tools/performance_vis.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,106 copying fugassem/tools/prepare_coann_pairs.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,108 copying fugassem/tools/sum_to_family_abundance.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,111 copying fugassem/tools/prepare_seqSimilarity.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,114 copying fugassem/tools/stratified_abundance.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,116 copying fugassem/tools/generate_stratified_mtx_input.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,119 copying fugassem/tools/gene_abundance_indexRef.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,122 copying fugassem/tools/abundance_normalization.py -> build/lib/fugassem/tools 2025-02-25T16:46:51,125 creating build/lib/fugassem/tasks 2025-02-25T16:46:51,127 copying fugassem/tasks/fugassem_preprocessing.py -> build/lib/fugassem/tasks 2025-02-25T16:46:51,132 copying fugassem/tasks/fugassem_process.py -> build/lib/fugassem/tasks 2025-02-25T16:46:51,135 copying fugassem/tasks/__init__.py -> build/lib/fugassem/tasks 2025-02-25T16:46:51,137 copying fugassem/tasks/fugassem_prediction.py -> build/lib/fugassem/tasks 2025-02-25T16:46:51,146 creating build/lib/fugassem/workflows 2025-02-25T16:46:51,147 copying fugassem/workflows/fugassem_workflow.py -> build/lib/fugassem/workflows 2025-02-25T16:46:51,154 creating build/lib/fugassem/data/GO 2025-02-25T16:46:51,156 copying fugassem/data/GO/go.obo.gz -> build/lib/fugassem/data/GO 2025-02-25T16:46:51,220 copying fugassem/data/GO/go-basic.obo -> build/lib/fugassem/data/GO 2025-02-25T16:46:51,669 running build_scripts 2025-02-25T16:46:51,670 creating build/scripts-3.11 2025-02-25T16:46:51,672 copying and adjusting fugassem/workflows/fugassem_workflow.py -> build/scripts-3.11 2025-02-25T16:46:51,675 changing mode of build/scripts-3.11/fugassem_workflow.py from 644 to 755 2025-02-25T16:46:51,705 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-02-25T16:46:51,705 !! 2025-02-25T16:46:51,706 ******************************************************************************** 2025-02-25T16:46:51,707 Please avoid running ``setup.py`` directly. 2025-02-25T16:46:51,707 Instead, use pypa/build, pypa/installer or other 2025-02-25T16:46:51,707 standards-based tools. 2025-02-25T16:46:51,708 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-02-25T16:46:51,709 ******************************************************************************** 2025-02-25T16:46:51,709 !! 2025-02-25T16:46:51,710 self.initialize_options() 2025-02-25T16:46:51,736 installing to build/bdist.linux-armv7l/wheel 2025-02-25T16:46:51,737 running install 2025-02-25T16:46:51,762 running install_lib 2025-02-25T16:46:51,790 creating build/bdist.linux-armv7l/wheel 2025-02-25T16:46:51,793 creating build/bdist.linux-armv7l/wheel/fugassem 2025-02-25T16:46:51,795 creating build/bdist.linux-armv7l/wheel/fugassem/common 2025-02-25T16:46:51,796 copying build/lib/fugassem/common/table2.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,800 copying build/lib/fugassem/common/corrmp.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,803 copying build/lib/fugassem/common/dictation.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,815 copying build/lib/fugassem/common/table2_stats.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,817 copying build/lib/fugassem/common/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,819 copying build/lib/fugassem/common/transpose.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,821 copying build/lib/fugassem/common/geneontology.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,824 copying build/lib/fugassem/common/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,827 copying build/lib/fugassem/common/utils.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,830 copying build/lib/fugassem/common/format_function.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-02-25T16:46:51,832 copying build/lib/fugassem/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-02-25T16:46:51,835 creating build/bdist.linux-armv7l/wheel/fugassem/data 2025-02-25T16:46:51,837 creating build/bdist.linux-armv7l/wheel/fugassem/data/GO 2025-02-25T16:46:51,838 copying build/lib/fugassem/data/GO/go.obo.gz -> build/bdist.linux-armv7l/wheel/./fugassem/data/GO 2025-02-25T16:46:51,909 copying build/lib/fugassem/data/GO/go-basic.obo -> build/bdist.linux-armv7l/wheel/./fugassem/data/GO 2025-02-25T16:46:52,354 copying build/lib/fugassem/fugassem.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-02-25T16:46:52,357 creating build/bdist.linux-armv7l/wheel/fugassem/predict 2025-02-25T16:46:52,358 copying build/lib/fugassem/predict/select_feature.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,360 copying build/lib/fugassem/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,362 copying build/lib/fugassem/predict/predict_function.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,364 copying build/lib/fugassem/predict/collect_ml_results.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,366 copying build/lib/fugassem/predict/machine_learning.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,369 copying build/lib/fugassem/predict/merged_prediction.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,371 copying build/lib/fugassem/predict/prepare_nextlayer_ml.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-02-25T16:46:52,373 copying build/lib/fugassem/utilities.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-02-25T16:46:52,376 copying build/lib/fugassem/config.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-02-25T16:46:52,379 creating build/bdist.linux-armv7l/wheel/fugassem/preprocess 2025-02-25T16:46:52,380 copying build/lib/fugassem/preprocess/collect_features.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,382 copying build/lib/fugassem/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,384 copying build/lib/fugassem/preprocess/convert_coann.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,386 copying build/lib/fugassem/preprocess/build_union_terms.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,388 copying build/lib/fugassem/preprocess/split_taxa.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,391 copying build/lib/fugassem/preprocess/refine_abunds.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,393 copying build/lib/fugassem/preprocess/impute_nan.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,395 copying build/lib/fugassem/preprocess/refine_anns.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,397 copying build/lib/fugassem/preprocess/calculate_correlation.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-02-25T16:46:52,401 creating build/bdist.linux-armv7l/wheel/fugassem/tools 2025-02-25T16:46:52,402 copying build/lib/fugassem/tools/gene_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,404 copying build/lib/fugassem/tools/generate_annotation_input.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,407 copying build/lib/fugassem/tools/gene_catalog_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,409 copying build/lib/fugassem/tools/abundance_smoothing.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,412 copying build/lib/fugassem/tools/prepare_annotation.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,414 copying build/lib/fugassem/tools/collect_seqSimilarity_results.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,416 copying build/lib/fugassem/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,417 copying build/lib/fugassem/tools/abundance_RPK.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,420 copying build/lib/fugassem/tools/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,422 copying build/lib/fugassem/tools/prepare_contig.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,424 copying build/lib/fugassem/tools/performance_vis.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,427 copying build/lib/fugassem/tools/prepare_coann_pairs.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,429 copying build/lib/fugassem/tools/sum_to_family_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,431 copying build/lib/fugassem/tools/prepare_seqSimilarity.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,433 copying build/lib/fugassem/tools/stratified_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,435 copying build/lib/fugassem/tools/generate_stratified_mtx_input.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,438 copying build/lib/fugassem/tools/gene_abundance_indexRef.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,440 copying build/lib/fugassem/tools/abundance_normalization.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-02-25T16:46:52,443 creating build/bdist.linux-armv7l/wheel/fugassem/tasks 2025-02-25T16:46:52,444 copying build/lib/fugassem/tasks/fugassem_preprocessing.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-02-25T16:46:52,448 copying build/lib/fugassem/tasks/fugassem_process.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-02-25T16:46:52,450 copying build/lib/fugassem/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-02-25T16:46:52,452 copying build/lib/fugassem/tasks/fugassem_prediction.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-02-25T16:46:52,455 creating build/bdist.linux-armv7l/wheel/fugassem/workflows 2025-02-25T16:46:52,456 copying build/lib/fugassem/workflows/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/./fugassem/workflows 2025-02-25T16:46:52,458 running install_egg_info 2025-02-25T16:46:52,489 running egg_info 2025-02-25T16:46:52,517 writing fugassem.egg-info/PKG-INFO 2025-02-25T16:46:52,520 writing dependency_links to fugassem.egg-info/dependency_links.txt 2025-02-25T16:46:52,523 writing entry points to fugassem.egg-info/entry_points.txt 2025-02-25T16:46:52,525 writing top-level names to fugassem.egg-info/top_level.txt 2025-02-25T16:46:52,563 reading manifest file 'fugassem.egg-info/SOURCES.txt' 2025-02-25T16:46:52,569 reading manifest template 'MANIFEST.in' 2025-02-25T16:46:52,587 adding license file 'LICENSE' 2025-02-25T16:46:52,593 writing manifest file 'fugassem.egg-info/SOURCES.txt' 2025-02-25T16:46:52,595 Copying fugassem.egg-info to build/bdist.linux-armv7l/wheel/./fugassem-0.3.7-py3.11.egg-info 2025-02-25T16:46:52,607 running install_scripts 2025-02-25T16:46:52,608 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.7.data/scripts 2025-02-25T16:46:52,610 copying build/scripts-3.11/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/fugassem-0.3.7.data/scripts 2025-02-25T16:46:52,612 changing mode of build/bdist.linux-armv7l/wheel/fugassem-0.3.7.data/scripts/fugassem_workflow.py to 755 2025-02-25T16:46:52,626 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.7.dist-info/WHEEL 2025-02-25T16:46:52,629 creating '/tmp/pip-wheel-t0m477uh/fugassem-0.3.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-02-25T16:46:52,631 adding 'fugassem/__init__.py' 2025-02-25T16:46:52,633 adding 'fugassem/config.py' 2025-02-25T16:46:52,634 adding 'fugassem/fugassem.py' 2025-02-25T16:46:52,638 adding 'fugassem/utilities.py' 2025-02-25T16:46:52,640 adding 'fugassem/common/__init__.py' 2025-02-25T16:46:52,642 adding 'fugassem/common/corrmp.py' 2025-02-25T16:46:52,643 adding 'fugassem/common/dictation.py' 2025-02-25T16:46:52,645 adding 'fugassem/common/extract_feature_subset.py' 2025-02-25T16:46:52,647 adding 'fugassem/common/format_function.py' 2025-02-25T16:46:52,649 adding 'fugassem/common/geneontology.py' 2025-02-25T16:46:52,653 adding 'fugassem/common/table2.py' 2025-02-25T16:46:52,654 adding 'fugassem/common/table2_stats.py' 2025-02-25T16:46:52,656 adding 'fugassem/common/transpose.py' 2025-02-25T16:46:52,658 adding 'fugassem/common/utils.py' 2025-02-25T16:46:55,019 adding 'fugassem/data/GO/go-basic.obo' 2025-02-25T16:46:55,707 adding 'fugassem/data/GO/go.obo.gz' 2025-02-25T16:46:55,737 adding 'fugassem/predict/__init__.py' 2025-02-25T16:46:55,739 adding 'fugassem/predict/collect_ml_results.py' 2025-02-25T16:46:55,741 adding 'fugassem/predict/machine_learning.py' 2025-02-25T16:46:55,743 adding 'fugassem/predict/merged_prediction.py' 2025-02-25T16:46:55,745 adding 'fugassem/predict/predict_function.py' 2025-02-25T16:46:55,747 adding 'fugassem/predict/prepare_nextlayer_ml.py' 2025-02-25T16:46:55,748 adding 'fugassem/predict/select_feature.py' 2025-02-25T16:46:55,750 adding 'fugassem/preprocess/__init__.py' 2025-02-25T16:46:55,752 adding 'fugassem/preprocess/build_union_terms.py' 2025-02-25T16:46:55,754 adding 'fugassem/preprocess/calculate_correlation.py' 2025-02-25T16:46:55,756 adding 'fugassem/preprocess/collect_features.py' 2025-02-25T16:46:55,758 adding 'fugassem/preprocess/convert_coann.py' 2025-02-25T16:46:55,759 adding 'fugassem/preprocess/impute_nan.py' 2025-02-25T16:46:55,761 adding 'fugassem/preprocess/refine_abunds.py' 2025-02-25T16:46:55,763 adding 'fugassem/preprocess/refine_anns.py' 2025-02-25T16:46:55,764 adding 'fugassem/preprocess/split_taxa.py' 2025-02-25T16:46:55,766 adding 'fugassem/tasks/__init__.py' 2025-02-25T16:46:55,768 adding 'fugassem/tasks/fugassem_prediction.py' 2025-02-25T16:46:55,772 adding 'fugassem/tasks/fugassem_preprocessing.py' 2025-02-25T16:46:55,775 adding 'fugassem/tasks/fugassem_process.py' 2025-02-25T16:46:55,777 adding 'fugassem/tools/__init__.py' 2025-02-25T16:46:55,778 adding 'fugassem/tools/abundance_RPK.py' 2025-02-25T16:46:55,780 adding 'fugassem/tools/abundance_normalization.py' 2025-02-25T16:46:55,781 adding 'fugassem/tools/abundance_smoothing.py' 2025-02-25T16:46:55,783 adding 'fugassem/tools/collect_seqSimilarity_results.py' 2025-02-25T16:46:55,784 adding 'fugassem/tools/extract_feature_subset.py' 2025-02-25T16:46:55,786 adding 'fugassem/tools/gene_abundance.py' 2025-02-25T16:46:55,787 adding 'fugassem/tools/gene_abundance_indexRef.py' 2025-02-25T16:46:55,789 adding 'fugassem/tools/gene_catalog_abundance.py' 2025-02-25T16:46:55,791 adding 'fugassem/tools/generate_annotation_input.py' 2025-02-25T16:46:55,794 adding 'fugassem/tools/generate_stratified_mtx_input.py' 2025-02-25T16:46:55,796 adding 'fugassem/tools/performance_vis.py' 2025-02-25T16:46:55,798 adding 'fugassem/tools/prepare_annotation.py' 2025-02-25T16:46:55,799 adding 'fugassem/tools/prepare_coann_pairs.py' 2025-02-25T16:46:55,800 adding 'fugassem/tools/prepare_contig.py' 2025-02-25T16:46:55,802 adding 'fugassem/tools/prepare_seqSimilarity.py' 2025-02-25T16:46:55,804 adding 'fugassem/tools/stratified_abundance.py' 2025-02-25T16:46:55,813 adding 'fugassem/tools/sum_to_family_abundance.py' 2025-02-25T16:46:55,816 adding 'fugassem/workflows/fugassem_workflow.py' 2025-02-25T16:46:55,819 adding 'fugassem-0.3.7.data/scripts/fugassem_workflow.py' 2025-02-25T16:46:55,821 adding 'fugassem-0.3.7.dist-info/LICENSE' 2025-02-25T16:46:55,822 adding 'fugassem-0.3.7.dist-info/METADATA' 2025-02-25T16:46:55,823 adding 'fugassem-0.3.7.dist-info/WHEEL' 2025-02-25T16:46:55,824 adding 'fugassem-0.3.7.dist-info/entry_points.txt' 2025-02-25T16:46:55,825 adding 'fugassem-0.3.7.dist-info/top_level.txt' 2025-02-25T16:46:55,827 adding 'fugassem-0.3.7.dist-info/RECORD' 2025-02-25T16:46:55,923 removing build/bdist.linux-armv7l/wheel 2025-02-25T16:46:56,062 Building wheel for fugassem (setup.py): finished with status 'done' 2025-02-25T16:46:56,152 Created wheel for fugassem: filename=fugassem-0.3.7-py3-none-any.whl size=8903563 sha256=c8914eb9273780b43402591472cbd6c23e4af9a03d5812b1bee9ffe245200452 2025-02-25T16:46:56,154 Stored in directory: /tmp/pip-ephem-wheel-cache-crja9gwr/wheels/9a/f8/c7/501670b0d4ecc7029f9dcf7c2e0860fee011f33cd43fef4f44 2025-02-25T16:46:56,168 Successfully built fugassem 2025-02-25T16:46:56,387 Removed build tracker: '/tmp/pip-build-tracker-3o2uqav4'