2025-02-26T02:50:00,185 Created temporary directory: /tmp/pip-build-tracker-6s8l4ruj
2025-02-26T02:50:00,187 Initialized build tracking at /tmp/pip-build-tracker-6s8l4ruj
2025-02-26T02:50:00,187 Created build tracker: /tmp/pip-build-tracker-6s8l4ruj
2025-02-26T02:50:00,188 Entered build tracker: /tmp/pip-build-tracker-6s8l4ruj
2025-02-26T02:50:00,188 Created temporary directory: /tmp/pip-wheel-ut9b2rjs
2025-02-26T02:50:00,192 Created temporary directory: /tmp/pip-ephem-wheel-cache-ku3fkq53
2025-02-26T02:50:00,239 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-02-26T02:50:00,242 2 location(s) to search for versions of xalign:
2025-02-26T02:50:00,242 * https://pypi.org/simple/xalign/
2025-02-26T02:50:00,242 * https://www.piwheels.org/simple/xalign/
2025-02-26T02:50:00,242 Fetching project page and analyzing links: https://pypi.org/simple/xalign/
2025-02-26T02:50:00,243 Getting page https://pypi.org/simple/xalign/
2025-02-26T02:50:00,245 Found index url https://pypi.org/simple/
2025-02-26T02:50:00,466 Fetched page https://pypi.org/simple/xalign/ as application/vnd.pypi.simple.v1+json
2025-02-26T02:50:00,468   Found link https://files.pythonhosted.org/packages/93/97/5b42679e7047ebbcef12812c134a669e9eecbd9b01b30eda93b45ec2647e/xalign-0.1.73.tar.gz (from https://pypi.org/simple/xalign/) (requires-python:>=3.6), version: 0.1.73
2025-02-26T02:50:00,469   Found link https://files.pythonhosted.org/packages/f6/79/822e98e6ef0670a245f39338196c73b416b0fc5f63460fa7fba7d0b07b35/xalign-0.1.74.tar.gz (from https://pypi.org/simple/xalign/) (requires-python:>=3.6), version: 0.1.74
2025-02-26T02:50:00,470   Found link https://files.pythonhosted.org/packages/41/98/6e3e282b2af675116a2800e8e9cab63999a1374a01b1608b12b0092ef365/xalign-0.1.75.tar.gz (from https://pypi.org/simple/xalign/) (requires-python:>=3.6), version: 0.1.75
2025-02-26T02:50:00,471 Fetching project page and analyzing links: https://www.piwheels.org/simple/xalign/
2025-02-26T02:50:00,471 Getting page https://www.piwheels.org/simple/xalign/
2025-02-26T02:50:00,473 Found index url https://www.piwheels.org/simple/
2025-02-26T02:50:00,641 Fetched page https://www.piwheels.org/simple/xalign/ as text/html
2025-02-26T02:50:00,643   Skipping link: No binaries permitted for xalign: https://www.piwheels.org/simple/xalign/xalign-0.1.74-py3-none-any.whl#sha256=3abc9bd63f1d6ebb5f4f94fca5d03532821e9a1dcff8646da2b72b330f15f373 (from https://www.piwheels.org/simple/xalign/) (requires-python:>=3.6)
2025-02-26T02:50:00,644   Skipping link: No binaries permitted for xalign: https://www.piwheels.org/simple/xalign/xalign-0.1.73-py3-none-any.whl#sha256=10544edaa8101f86acc69497358615d92c69ad66a7f0ad9adcb8723a96cee18b (from https://www.piwheels.org/simple/xalign/) (requires-python:>=3.6)
2025-02-26T02:50:00,645 Skipping link: not a file: https://www.piwheels.org/simple/xalign/
2025-02-26T02:50:00,645 Skipping link: not a file: https://pypi.org/simple/xalign/
2025-02-26T02:50:00,664 Given no hashes to check 1 links for project 'xalign': discarding no candidates
2025-02-26T02:50:00,666 Collecting xalign==0.1.75
2025-02-26T02:50:00,669   Created temporary directory: /tmp/pip-unpack-dwlkg12w
2025-02-26T02:50:01,137   Downloading xalign-0.1.75.tar.gz (6.1 MB)
2025-02-26T02:50:02,250   Added xalign==0.1.75 from https://files.pythonhosted.org/packages/41/98/6e3e282b2af675116a2800e8e9cab63999a1374a01b1608b12b0092ef365/xalign-0.1.75.tar.gz to build tracker '/tmp/pip-build-tracker-6s8l4ruj'
2025-02-26T02:50:02,252   Running setup.py (path:/tmp/pip-wheel-ut9b2rjs/xalign_40071e9c1300442c84ed9b3dff0d77fe/setup.py) egg_info for package xalign
2025-02-26T02:50:02,253   Created temporary directory: /tmp/pip-pip-egg-info-7r9st6dv
2025-02-26T02:50:02,254   Preparing metadata (setup.py): started
2025-02-26T02:50:02,255   Running command python setup.py egg_info
2025-02-26T02:50:03,317   running egg_info
2025-02-26T02:50:03,344   creating /tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info
2025-02-26T02:50:03,346   writing /tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/PKG-INFO
2025-02-26T02:50:03,350   writing dependency_links to /tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/dependency_links.txt
2025-02-26T02:50:03,352   writing requirements to /tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/requires.txt
2025-02-26T02:50:03,353   writing top-level names to /tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/top_level.txt
2025-02-26T02:50:03,354   writing manifest file '/tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/SOURCES.txt'
2025-02-26T02:50:03,438   reading manifest file '/tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/SOURCES.txt'
2025-02-26T02:50:03,440   reading manifest template 'MANIFEST.in'
2025-02-26T02:50:03,441   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2025-02-26T02:50:03,442   warning: no previously-included files matching '*fastq.gz' found anywhere in distribution
2025-02-26T02:50:03,443   warning: no previously-included files matching '*kallisto.tar.gz' found anywhere in distribution
2025-02-26T02:50:03,443   warning: no previously-included files matching '*ids.json' found anywhere in distribution
2025-02-26T02:50:03,443   adding license file 'LICENSE'
2025-02-26T02:50:03,446   writing manifest file '/tmp/pip-pip-egg-info-7r9st6dv/xalign.egg-info/SOURCES.txt'
2025-02-26T02:50:03,555   Preparing metadata (setup.py): finished with status 'done'
2025-02-26T02:50:03,560   Source in /tmp/pip-wheel-ut9b2rjs/xalign_40071e9c1300442c84ed9b3dff0d77fe has version 0.1.75, which satisfies requirement xalign==0.1.75 from https://files.pythonhosted.org/packages/41/98/6e3e282b2af675116a2800e8e9cab63999a1374a01b1608b12b0092ef365/xalign-0.1.75.tar.gz
2025-02-26T02:50:03,560   Removed xalign==0.1.75 from https://files.pythonhosted.org/packages/41/98/6e3e282b2af675116a2800e8e9cab63999a1374a01b1608b12b0092ef365/xalign-0.1.75.tar.gz from build tracker '/tmp/pip-build-tracker-6s8l4ruj'
2025-02-26T02:50:03,567 Created temporary directory: /tmp/pip-unpack-xuregfma
2025-02-26T02:50:03,568 Created temporary directory: /tmp/pip-unpack-uked7bkw
2025-02-26T02:50:03,569 Building wheels for collected packages: xalign
2025-02-26T02:50:03,573   Created temporary directory: /tmp/pip-wheel-uyh63dm9
2025-02-26T02:50:03,573   Building wheel for xalign (setup.py): started
2025-02-26T02:50:03,575   Destination directory: /tmp/pip-wheel-uyh63dm9
2025-02-26T02:50:03,575   Running command python setup.py bdist_wheel
2025-02-26T02:50:04,597   running bdist_wheel
2025-02-26T02:50:04,733   running build
2025-02-26T02:50:04,734   running build_py
2025-02-26T02:50:04,769   creating build/lib/xalign
2025-02-26T02:50:04,772   copying xalign/utils.py -> build/lib/xalign
2025-02-26T02:50:04,775   copying xalign/__init__.py -> build/lib/xalign
2025-02-26T02:50:04,778   copying xalign/sra.py -> build/lib/xalign
2025-02-26T02:50:04,781   copying xalign/file.py -> build/lib/xalign
2025-02-26T02:50:04,783   copying xalign/ensembl.py -> build/lib/xalign
2025-02-26T02:50:04,786   running egg_info
2025-02-26T02:50:04,815   writing xalign.egg-info/PKG-INFO
2025-02-26T02:50:04,819   writing dependency_links to xalign.egg-info/dependency_links.txt
2025-02-26T02:50:04,821   writing requirements to xalign.egg-info/requires.txt
2025-02-26T02:50:04,822   writing top-level names to xalign.egg-info/top_level.txt
2025-02-26T02:50:04,853   reading manifest file 'xalign.egg-info/SOURCES.txt'
2025-02-26T02:50:04,856   reading manifest template 'MANIFEST.in'
2025-02-26T02:50:04,857   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2025-02-26T02:50:04,858   warning: no previously-included files matching '*fastq.gz' found anywhere in distribution
2025-02-26T02:50:04,859   warning: no previously-included files matching '*kallisto.tar.gz' found anywhere in distribution
2025-02-26T02:50:04,859   warning: no previously-included files matching '*ids.json' found anywhere in distribution
2025-02-26T02:50:04,860   adding license file 'LICENSE'
2025-02-26T02:50:04,862   writing manifest file 'xalign.egg-info/SOURCES.txt'
2025-02-26T02:50:04,864   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'xalign.data' is absent from the `packages` configuration.
2025-02-26T02:50:04,865   !!

2025-02-26T02:50:04,866           ********************************************************************************
2025-02-26T02:50:04,867           ############################
2025-02-26T02:50:04,867           # Package would be ignored #
2025-02-26T02:50:04,868           ############################
2025-02-26T02:50:04,868           Python recognizes 'xalign.data' as an importable package[^1],
2025-02-26T02:50:04,868           but it is absent from setuptools' `packages` configuration.

2025-02-26T02:50:04,869           This leads to an ambiguous overall configuration. If you want to distribute this
2025-02-26T02:50:04,870           package, please make sure that 'xalign.data' is explicitly added
2025-02-26T02:50:04,870           to the `packages` configuration field.

2025-02-26T02:50:04,871           Alternatively, you can also rely on setuptools' discovery methods
2025-02-26T02:50:04,871           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-02-26T02:50:04,872           instead of `find_packages(...)`/`find:`).

2025-02-26T02:50:04,873           You can read more about "package discovery" on setuptools documentation page:

2025-02-26T02:50:04,874           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-02-26T02:50:04,875           If you don't want 'xalign.data' to be distributed and are
2025-02-26T02:50:04,875           already explicitly excluding 'xalign.data' via
2025-02-26T02:50:04,876           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-02-26T02:50:04,876           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-02-26T02:50:04,877           combination with a more fine grained `package-data` configuration.

2025-02-26T02:50:04,878           You can read more about "package data files" on setuptools documentation page:

2025-02-26T02:50:04,879           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-02-26T02:50:04,904           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-02-26T02:50:04,908                 even if it does not contain any `.py` files.
2025-02-26T02:50:04,908                 On the other hand, currently there is no concept of package data
2025-02-26T02:50:04,909                 directory, all directories are treated like packages.
2025-02-26T02:50:04,910           ********************************************************************************

2025-02-26T02:50:04,910   !!
2025-02-26T02:50:04,911     check.warn(importable)
2025-02-26T02:50:04,912   creating build/lib/xalign/data
2025-02-26T02:50:04,912   copying xalign/data/config.json -> build/lib/xalign/data
2025-02-26T02:50:04,913   copying xalign/data/fasterq-dump.tar.gz -> build/lib/xalign/data
2025-02-26T02:50:04,913   copying xalign/data/fasterq.tar.gz -> build/lib/xalign/data
2025-02-26T02:50:04,998   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-02-26T02:50:04,998   !!

2025-02-26T02:50:05,000           ********************************************************************************
2025-02-26T02:50:05,000           Please avoid running ``setup.py`` directly.
2025-02-26T02:50:05,001           Instead, use pypa/build, pypa/installer or other
2025-02-26T02:50:05,001           standards-based tools.

2025-02-26T02:50:05,002           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-02-26T02:50:05,003           ********************************************************************************

2025-02-26T02:50:05,004   !!
2025-02-26T02:50:05,004     self.initialize_options()
2025-02-26T02:50:05,025   installing to build/bdist.linux-armv7l/wheel
2025-02-26T02:50:05,026   running install
2025-02-26T02:50:05,050   running install_lib
2025-02-26T02:50:05,081   creating build/bdist.linux-armv7l/wheel
2025-02-26T02:50:05,083   creating build/bdist.linux-armv7l/wheel/xalign
2025-02-26T02:50:05,085   creating build/bdist.linux-armv7l/wheel/xalign/data
2025-02-26T02:50:05,086   copying build/lib/xalign/data/config.json -> build/bdist.linux-armv7l/wheel/./xalign/data
2025-02-26T02:50:05,088   copying build/lib/xalign/data/fasterq-dump.tar.gz -> build/bdist.linux-armv7l/wheel/./xalign/data
2025-02-26T02:50:05,117   copying build/lib/xalign/data/fasterq.tar.gz -> build/bdist.linux-armv7l/wheel/./xalign/data
2025-02-26T02:50:05,186   copying build/lib/xalign/utils.py -> build/bdist.linux-armv7l/wheel/./xalign
2025-02-26T02:50:05,188   copying build/lib/xalign/__init__.py -> build/bdist.linux-armv7l/wheel/./xalign
2025-02-26T02:50:05,190   copying build/lib/xalign/sra.py -> build/bdist.linux-armv7l/wheel/./xalign
2025-02-26T02:50:05,192   copying build/lib/xalign/file.py -> build/bdist.linux-armv7l/wheel/./xalign
2025-02-26T02:50:05,194   copying build/lib/xalign/ensembl.py -> build/bdist.linux-armv7l/wheel/./xalign
2025-02-26T02:50:05,196   running install_egg_info
2025-02-26T02:50:05,229   Copying xalign.egg-info to build/bdist.linux-armv7l/wheel/./xalign-0.1.75-py3.11.egg-info
2025-02-26T02:50:05,239   running install_scripts
2025-02-26T02:50:05,255   creating build/bdist.linux-armv7l/wheel/xalign-0.1.75.dist-info/WHEEL
2025-02-26T02:50:05,257   creating '/tmp/pip-wheel-uyh63dm9/xalign-0.1.75-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-02-26T02:50:05,260   adding 'xalign/__init__.py'
2025-02-26T02:50:05,262   adding 'xalign/ensembl.py'
2025-02-26T02:50:05,263   adding 'xalign/file.py'
2025-02-26T02:50:05,264   adding 'xalign/sra.py'
2025-02-26T02:50:05,265   adding 'xalign/utils.py'
2025-02-26T02:50:05,267   adding 'xalign/data/config.json'
2025-02-26T02:50:05,486   adding 'xalign/data/fasterq-dump.tar.gz'
2025-02-26T02:50:05,951   adding 'xalign/data/fasterq.tar.gz'
2025-02-26T02:50:05,979   adding 'xalign-0.1.75.dist-info/LICENSE'
2025-02-26T02:50:05,981   adding 'xalign-0.1.75.dist-info/METADATA'
2025-02-26T02:50:05,982   adding 'xalign-0.1.75.dist-info/WHEEL'
2025-02-26T02:50:05,983   adding 'xalign-0.1.75.dist-info/top_level.txt'
2025-02-26T02:50:05,984   adding 'xalign-0.1.75.dist-info/RECORD'
2025-02-26T02:50:06,095   removing build/bdist.linux-armv7l/wheel
2025-02-26T02:50:06,214   Building wheel for xalign (setup.py): finished with status 'done'
2025-02-26T02:50:06,276   Created wheel for xalign: filename=xalign-0.1.75-py3-none-any.whl size=6053271 sha256=5e453e5fac3fe63067fedce660f064c27c38fb8a867eaa9944dfb1a925dc7244
2025-02-26T02:50:06,279   Stored in directory: /tmp/pip-ephem-wheel-cache-ku3fkq53/wheels/50/2e/23/587da5449a95cfe8275747be86d904abbc745815b615a4f105
2025-02-26T02:50:06,291 Successfully built xalign
2025-02-26T02:50:06,530 Removed build tracker: '/tmp/pip-build-tracker-6s8l4ruj'