2025-03-06T12:40:21,994 Created temporary directory: /tmp/pip-build-tracker-m15lwq81 2025-03-06T12:40:21,995 Initialized build tracking at /tmp/pip-build-tracker-m15lwq81 2025-03-06T12:40:21,996 Created build tracker: /tmp/pip-build-tracker-m15lwq81 2025-03-06T12:40:21,996 Entered build tracker: /tmp/pip-build-tracker-m15lwq81 2025-03-06T12:40:21,997 Created temporary directory: /tmp/pip-wheel-2_4dcjfb 2025-03-06T12:40:22,001 Created temporary directory: /tmp/pip-ephem-wheel-cache-0emgmtyl 2025-03-06T12:40:22,045 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-06T12:40:22,048 2 location(s) to search for versions of codon-bias: 2025-03-06T12:40:22,048 * https://pypi.org/simple/codon-bias/ 2025-03-06T12:40:22,048 * https://www.piwheels.org/simple/codon-bias/ 2025-03-06T12:40:22,049 Fetching project page and analyzing links: https://pypi.org/simple/codon-bias/ 2025-03-06T12:40:22,050 Getting page https://pypi.org/simple/codon-bias/ 2025-03-06T12:40:22,051 Found index url https://pypi.org/simple/ 2025-03-06T12:40:22,270 Fetched page https://pypi.org/simple/codon-bias/ as application/vnd.pypi.simple.v1+json 2025-03-06T12:40:22,273 Found link https://files.pythonhosted.org/packages/17/35/c2e6fcb73d84d1f5035be8092cee3b2af06af723b84352638447529d227c/codon-bias-0.1.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.1.0 2025-03-06T12:40:22,274 Found link https://files.pythonhosted.org/packages/cc/4e/11bcc186f4618fba833af761d7d3e7598b3c57ee4d11f7c733790bb5db20/codon-bias-0.2.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.2.0 2025-03-06T12:40:22,275 Found link https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.0 2025-03-06T12:40:22,276 Found link https://files.pythonhosted.org/packages/03/9f/c0df251e0912595b2d5e55e61832c650c2453f95d1559cb864654e286126/codon-bias-0.3.1.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.1 2025-03-06T12:40:22,277 Found link https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.2 2025-03-06T12:40:22,278 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/93/54/c8f62181dbbe091c5441fb92e6d1d2000499befd02cf6c8ca278c251b9fc/codon_bias-0.3.2-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,279 Found link https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.3 2025-03-06T12:40:22,279 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/54/5d/abeb6cc53b8ef788668fe4020ea93e27bab526bdcba6e9194a64775597ea/codon_bias-0.3.3-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,280 Found link https://files.pythonhosted.org/packages/89/7f/3923ff70ab9f2e66517db8d4f27eb27713fbcfab4837dbf7783693b4558f/codon-bias-0.3.4.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.4 2025-03-06T12:40:22,281 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/57/e3/03da8ea2a470ebc1a867d90fd852b9665cfe7493e75932ac17c64e51511b/codon_bias-0.3.4-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,281 Fetching project page and analyzing links: https://www.piwheels.org/simple/codon-bias/ 2025-03-06T12:40:22,282 Getting page https://www.piwheels.org/simple/codon-bias/ 2025-03-06T12:40:22,283 Found index url https://www.piwheels.org/simple/ 2025-03-06T12:40:22,458 Fetched page https://www.piwheels.org/simple/codon-bias/ as text/html 2025-03-06T12:40:22,461 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.3-py3-none-any.whl#sha256=4541985ec3d294224e4bc6d70289c3c0b10b63af3d72879a0786bcd7c3186182 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,462 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.2-py3-none-any.whl#sha256=7d19f79566e03ef7de880c81eea9659e1ab32de5f7c4cd6a42153627ed4d5c7b (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,462 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.1-py3-none-any.whl#sha256=26224a3549ff4812bed0265b7c0f62591b26ef8ff8ebfe7143916ff6f5ecea4c (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,462 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.0-py3-none-any.whl#sha256=d3bc123aaf0d19c1e1e0e294b090f33fb6784cdc5e271759162ecd80d8545586 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,463 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.2.0-py3-none-any.whl#sha256=54af1367ee5a968ac294644b098ab9e7b911598789435a083c12187ceeeb410e (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,463 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.1.0-py3-none-any.whl#sha256=45c2aa92ebf3bab8074d6a6e66799cacc106af5c5635b2eb1d6e2369f37a9ed8 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-06T12:40:22,464 Skipping link: not a file: https://www.piwheels.org/simple/codon-bias/ 2025-03-06T12:40:22,465 Skipping link: not a file: https://pypi.org/simple/codon-bias/ 2025-03-06T12:40:22,484 Given no hashes to check 1 links for project 'codon-bias': discarding no candidates 2025-03-06T12:40:22,486 Collecting codon-bias==0.3.4 2025-03-06T12:40:22,489 Created temporary directory: /tmp/pip-unpack-nqrunblo 2025-03-06T12:40:22,703 Downloading codon-bias-0.3.4.tar.gz (104 kB) 2025-03-06T12:40:22,828 Added codon-bias==0.3.4 from https://files.pythonhosted.org/packages/89/7f/3923ff70ab9f2e66517db8d4f27eb27713fbcfab4837dbf7783693b4558f/codon-bias-0.3.4.tar.gz to build tracker '/tmp/pip-build-tracker-m15lwq81' 2025-03-06T12:40:22,830 Running setup.py (path:/tmp/pip-wheel-2_4dcjfb/codon-bias_0b87ba3202c94cd484c1aef137ac2995/setup.py) egg_info for package codon-bias 2025-03-06T12:40:22,831 Created temporary directory: /tmp/pip-pip-egg-info-t44c76xa 2025-03-06T12:40:22,831 Preparing metadata (setup.py): started 2025-03-06T12:40:22,833 Running command python setup.py egg_info 2025-03-06T12:40:23,395 No `name` configuration, performing automatic discovery 2025-03-06T12:40:23,974 running egg_info 2025-03-06T12:40:24,002 creating /tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info 2025-03-06T12:40:24,003 writing /tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/PKG-INFO 2025-03-06T12:40:24,006 writing dependency_links to /tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/dependency_links.txt 2025-03-06T12:40:24,008 writing requirements to /tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/requires.txt 2025-03-06T12:40:24,009 writing top-level names to /tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/top_level.txt 2025-03-06T12:40:24,011 writing manifest file '/tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/SOURCES.txt' 2025-03-06T12:40:24,098 reading manifest file '/tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/SOURCES.txt' 2025-03-06T12:40:24,100 reading manifest template 'MANIFEST.in' 2025-03-06T12:40:24,101 adding license file 'LICENSE' 2025-03-06T12:40:24,104 writing manifest file '/tmp/pip-pip-egg-info-t44c76xa/codon_bias.egg-info/SOURCES.txt' 2025-03-06T12:40:24,215 Preparing metadata (setup.py): finished with status 'done' 2025-03-06T12:40:24,219 Source in /tmp/pip-wheel-2_4dcjfb/codon-bias_0b87ba3202c94cd484c1aef137ac2995 has version 0.3.4, which satisfies requirement codon-bias==0.3.4 from https://files.pythonhosted.org/packages/89/7f/3923ff70ab9f2e66517db8d4f27eb27713fbcfab4837dbf7783693b4558f/codon-bias-0.3.4.tar.gz 2025-03-06T12:40:24,221 Removed codon-bias==0.3.4 from https://files.pythonhosted.org/packages/89/7f/3923ff70ab9f2e66517db8d4f27eb27713fbcfab4837dbf7783693b4558f/codon-bias-0.3.4.tar.gz from build tracker '/tmp/pip-build-tracker-m15lwq81' 2025-03-06T12:40:24,226 Created temporary directory: /tmp/pip-unpack-785azang 2025-03-06T12:40:24,227 Created temporary directory: /tmp/pip-unpack-klgpr2up 2025-03-06T12:40:24,228 Building wheels for collected packages: codon-bias 2025-03-06T12:40:24,232 Created temporary directory: /tmp/pip-wheel-4pipce5t 2025-03-06T12:40:24,232 Building wheel for codon-bias (setup.py): started 2025-03-06T12:40:24,233 Destination directory: /tmp/pip-wheel-4pipce5t 2025-03-06T12:40:24,234 Running command python setup.py bdist_wheel 2025-03-06T12:40:24,762 No `name` configuration, performing automatic discovery 2025-03-06T12:40:25,299 running bdist_wheel 2025-03-06T12:40:25,432 running build 2025-03-06T12:40:25,432 running build_py 2025-03-06T12:40:25,462 creating build/lib/codonbias 2025-03-06T12:40:25,465 copying codonbias/utils.py -> build/lib/codonbias 2025-03-06T12:40:25,467 copying codonbias/scores.py -> build/lib/codonbias 2025-03-06T12:40:25,470 copying codonbias/pairwise.py -> build/lib/codonbias 2025-03-06T12:40:25,472 copying codonbias/stats.py -> build/lib/codonbias 2025-03-06T12:40:25,475 copying codonbias/random.py -> build/lib/codonbias 2025-03-06T12:40:25,477 copying codonbias/__init__.py -> build/lib/codonbias 2025-03-06T12:40:25,479 copying codonbias/optimizers.py -> build/lib/codonbias 2025-03-06T12:40:25,481 running egg_info 2025-03-06T12:40:25,509 writing codon_bias.egg-info/PKG-INFO 2025-03-06T12:40:25,512 writing dependency_links to codon_bias.egg-info/dependency_links.txt 2025-03-06T12:40:25,514 writing requirements to codon_bias.egg-info/requires.txt 2025-03-06T12:40:25,515 writing top-level names to codon_bias.egg-info/top_level.txt 2025-03-06T12:40:25,546 reading manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-03-06T12:40:25,550 reading manifest template 'MANIFEST.in' 2025-03-06T12:40:25,551 adding license file 'LICENSE' 2025-03-06T12:40:25,554 writing manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-03-06T12:40:25,557 copying codonbias/genetic_code_ncbi.csv -> build/lib/codonbias 2025-03-06T12:40:25,559 copying codonbias/tAI_svalues_Tuller.csv -> build/lib/codonbias 2025-03-06T12:40:25,562 copying codonbias/tAI_svalues_dosReis.csv -> build/lib/codonbias 2025-03-06T12:40:25,591 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-06T12:40:25,592 !! 2025-03-06T12:40:25,593 ******************************************************************************** 2025-03-06T12:40:25,593 Please avoid running ``setup.py`` directly. 2025-03-06T12:40:25,594 Instead, use pypa/build, pypa/installer or other 2025-03-06T12:40:25,594 standards-based tools. 2025-03-06T12:40:25,595 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-06T12:40:25,596 ******************************************************************************** 2025-03-06T12:40:25,597 !! 2025-03-06T12:40:25,597 self.initialize_options() 2025-03-06T12:40:25,620 installing to build/bdist.linux-armv7l/wheel 2025-03-06T12:40:25,620 running install 2025-03-06T12:40:25,643 running install_lib 2025-03-06T12:40:25,671 creating build/bdist.linux-armv7l/wheel 2025-03-06T12:40:25,673 creating build/bdist.linux-armv7l/wheel/codonbias 2025-03-06T12:40:25,675 copying build/lib/codonbias/utils.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,678 copying build/lib/codonbias/scores.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,682 copying build/lib/codonbias/pairwise.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,685 copying build/lib/codonbias/genetic_code_ncbi.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,687 copying build/lib/codonbias/tAI_svalues_dosReis.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,689 copying build/lib/codonbias/tAI_svalues_Tuller.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,690 copying build/lib/codonbias/stats.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,693 copying build/lib/codonbias/random.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,695 copying build/lib/codonbias/__init__.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,697 copying build/lib/codonbias/optimizers.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-06T12:40:25,699 running install_egg_info 2025-03-06T12:40:25,733 Copying codon_bias.egg-info to build/bdist.linux-armv7l/wheel/./codon_bias-0.3.4-py3.11.egg-info 2025-03-06T12:40:25,742 running install_scripts 2025-03-06T12:40:25,756 creating build/bdist.linux-armv7l/wheel/codon_bias-0.3.4.dist-info/WHEEL 2025-03-06T12:40:25,758 creating '/tmp/pip-wheel-4pipce5t/codon_bias-0.3.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-06T12:40:25,761 adding 'codonbias/__init__.py' 2025-03-06T12:40:25,763 adding 'codonbias/genetic_code_ncbi.csv' 2025-03-06T12:40:25,764 adding 'codonbias/optimizers.py' 2025-03-06T12:40:25,766 adding 'codonbias/pairwise.py' 2025-03-06T12:40:25,768 adding 'codonbias/random.py' 2025-03-06T12:40:25,773 adding 'codonbias/scores.py' 2025-03-06T12:40:25,775 adding 'codonbias/stats.py' 2025-03-06T12:40:25,776 adding 'codonbias/tAI_svalues_Tuller.csv' 2025-03-06T12:40:25,778 adding 'codonbias/tAI_svalues_dosReis.csv' 2025-03-06T12:40:25,779 adding 'codonbias/utils.py' 2025-03-06T12:40:25,780 adding 'codon_bias-0.3.4.dist-info/LICENSE' 2025-03-06T12:40:25,782 adding 'codon_bias-0.3.4.dist-info/METADATA' 2025-03-06T12:40:25,782 adding 'codon_bias-0.3.4.dist-info/WHEEL' 2025-03-06T12:40:25,783 adding 'codon_bias-0.3.4.dist-info/top_level.txt' 2025-03-06T12:40:25,784 adding 'codon_bias-0.3.4.dist-info/RECORD' 2025-03-06T12:40:25,786 removing build/bdist.linux-armv7l/wheel 2025-03-06T12:40:25,901 Building wheel for codon-bias (setup.py): finished with status 'done' 2025-03-06T12:40:25,904 Created wheel for codon-bias: filename=codon_bias-0.3.4-py3-none-any.whl size=28232 sha256=df9d6b51ba629223226cfe1d8ab0e9b8a3eedca845e2bd427ce606b5e9ab5a72 2025-03-06T12:40:25,906 Stored in directory: /tmp/pip-ephem-wheel-cache-0emgmtyl/wheels/d3/d0/1a/621351637a757889bc10d5a3635d4439bb86d8e6fae78860f5 2025-03-06T12:40:25,916 Successfully built codon-bias 2025-03-06T12:40:25,920 Removed build tracker: '/tmp/pip-build-tracker-m15lwq81'