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https://www.piwheels.org/simple/kage-genotyper/ as text/html 2025-03-07T12:28:41,183 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.6-py3-none-any.whl#sha256=45016ebcd29ec1cb5830e72b28fa6f15bf85daea6fde9f49960b315b61da86ae (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,184 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.5-py3-none-any.whl#sha256=6d4e1df98f07b6472f2578fb69cb598bb022128d3f6ac7a5e9a8db0db54792aa (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,185 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.4-py3-none-any.whl#sha256=a183b352c81bb180776c7d8ec282a65e73c451356fdeffc145981757534f750d (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,185 Skipping link: No binaries permitted 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https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.7-py3-none-any.whl#sha256=6c45550e73562e3543e4dedf63f5e42897169f62a701603f2c4a460ac1e0b5fa (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,212 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.6-py3-none-any.whl#sha256=7f26289022b49cd9611615aa9f542bea798b0827f5df45e23c5d65148fb2f169 (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,213 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.5-py3-none-any.whl#sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,213 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,214 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/) 2025-03-07T12:28:41,214 Skipping link: not a file: https://www.piwheels.org/simple/kage-genotyper/ 2025-03-07T12:28:41,215 Skipping link: not a file: https://pypi.org/simple/kage-genotyper/ 2025-03-07T12:28:41,241 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates 2025-03-07T12:28:41,243 Collecting kage-genotyper==2.0.7 2025-03-07T12:28:41,246 Created temporary directory: /tmp/pip-unpack-7l62oagj 2025-03-07T12:28:41,467 Downloading kage-genotyper-2.0.7.tar.gz (13.0 MB) 2025-03-07T12:28:44,321 Added kage-genotyper==2.0.7 from https://files.pythonhosted.org/packages/0f/68/e534fe06b1f6893df22bc86baaff2aa1aad76583eaa87783943335228ab4/kage-genotyper-2.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-cblahbt_' 2025-03-07T12:28:44,323 Running setup.py (path:/tmp/pip-wheel-v56ux5n1/kage-genotyper_e65cbff01e8e4913a93aacaee664b6e8/setup.py) egg_info for package kage-genotyper 2025-03-07T12:28:44,324 Created temporary directory: /tmp/pip-pip-egg-info-8pv_bgra 2025-03-07T12:28:44,325 Preparing metadata (setup.py): started 2025-03-07T12:28:44,326 Running command python setup.py egg_info 2025-03-07T12:28:45,380 running egg_info 2025-03-07T12:28:45,410 creating /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info 2025-03-07T12:28:45,411 writing /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/PKG-INFO 2025-03-07T12:28:45,414 writing dependency_links to /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/dependency_links.txt 2025-03-07T12:28:45,416 writing entry points to /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/entry_points.txt 2025-03-07T12:28:45,418 writing requirements to /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/requires.txt 2025-03-07T12:28:45,419 writing top-level names to /tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/top_level.txt 2025-03-07T12:28:45,420 writing manifest file '/tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/SOURCES.txt' 2025-03-07T12:28:45,516 reading manifest file '/tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/SOURCES.txt' 2025-03-07T12:28:45,518 adding license file 'LICENSE' 2025-03-07T12:28:45,523 writing manifest file '/tmp/pip-pip-egg-info-8pv_bgra/kage_genotyper.egg-info/SOURCES.txt' 2025-03-07T12:28:45,632 Preparing metadata (setup.py): finished with status 'done' 2025-03-07T12:28:45,636 Source in /tmp/pip-wheel-v56ux5n1/kage-genotyper_e65cbff01e8e4913a93aacaee664b6e8 has version 2.0.7, which satisfies requirement kage-genotyper==2.0.7 from https://files.pythonhosted.org/packages/0f/68/e534fe06b1f6893df22bc86baaff2aa1aad76583eaa87783943335228ab4/kage-genotyper-2.0.7.tar.gz 2025-03-07T12:28:45,637 Removed kage-genotyper==2.0.7 from https://files.pythonhosted.org/packages/0f/68/e534fe06b1f6893df22bc86baaff2aa1aad76583eaa87783943335228ab4/kage-genotyper-2.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-cblahbt_' 2025-03-07T12:28:45,644 Created temporary directory: /tmp/pip-unpack-jru4wxzk 2025-03-07T12:28:45,645 Created temporary directory: /tmp/pip-unpack-3nxlysm2 2025-03-07T12:28:45,646 Building wheels for collected packages: kage-genotyper 2025-03-07T12:28:45,650 Created temporary directory: /tmp/pip-wheel-7m3fr4f2 2025-03-07T12:28:45,651 Building wheel for kage-genotyper (setup.py): started 2025-03-07T12:28:45,653 Destination directory: /tmp/pip-wheel-7m3fr4f2 2025-03-07T12:28:45,653 Running command python setup.py bdist_wheel 2025-03-07T12:28:46,673 running bdist_wheel 2025-03-07T12:28:46,804 running build 2025-03-07T12:28:46,805 running build_py 2025-03-07T12:28:46,836 creating build/lib/kage 2025-03-07T12:28:46,838 copying kage/configuration.py -> build/lib/kage 2025-03-07T12:28:46,841 copying kage/__init__.py -> build/lib/kage 2025-03-07T12:28:46,843 copying kage/variant_filtering.py -> build/lib/kage 2025-03-07T12:28:46,845 copying kage/io.py -> build/lib/kage 2025-03-07T12:28:46,848 copying kage/node_counts.py -> build/lib/kage 2025-03-07T12:28:46,850 copying kage/naive_genotyper.py -> build/lib/kage 2025-03-07T12:28:46,853 copying kage/command_line_interface.py -> build/lib/kage 2025-03-07T12:28:46,856 copying kage/util.py -> build/lib/kage 2025-03-07T12:28:46,859 creating build/lib/kage/genotyping 2025-03-07T12:28:46,860 copying kage/genotyping/combination_model_genotyper.py -> build/lib/kage/genotyping 2025-03-07T12:28:46,862 copying kage/genotyping/__init__.py -> build/lib/kage/genotyping 2025-03-07T12:28:46,864 copying kage/genotyping/multiallelic.py -> build/lib/kage/genotyping 2025-03-07T12:28:46,867 creating build/lib/kage/models 2025-03-07T12:28:46,868 copying kage/models/__init__.py -> build/lib/kage/models 2025-03-07T12:28:46,870 copying kage/models/mapping_model.py -> build/lib/kage/models 2025-03-07T12:28:46,872 copying kage/models/models.py -> build/lib/kage/models 2025-03-07T12:28:46,874 copying kage/models/helper_model.py -> build/lib/kage/models 2025-03-07T12:28:46,877 copying kage/models/joint_distribution.py -> build/lib/kage/models 2025-03-07T12:28:46,879 copying kage/models/helper_index.py -> build/lib/kage/models 2025-03-07T12:28:46,881 copying kage/models/helper_index_using_duplicate_counts.py -> build/lib/kage/models 2025-03-07T12:28:46,883 copying kage/models/sampling_combo_model.py -> build/lib/kage/models 2025-03-07T12:28:46,886 creating build/lib/kage/benchmarking 2025-03-07T12:28:46,887 copying kage/benchmarking/__init__.py -> build/lib/kage/benchmarking 2025-03-07T12:28:46,889 copying kage/benchmarking/vcf_preprocessing.py -> build/lib/kage/benchmarking 2025-03-07T12:28:46,892 creating build/lib/kage/indexing 2025-03-07T12:28:46,893 copying kage/indexing/path_variant_indexing.py -> build/lib/kage/indexing 2025-03-07T12:28:46,895 copying kage/indexing/modulo_filter.py -> build/lib/kage/indexing 2025-03-07T12:28:46,897 copying kage/indexing/index_bundle.py -> build/lib/kage/indexing 2025-03-07T12:28:46,899 copying kage/indexing/__init__.py -> build/lib/kage/indexing 2025-03-07T12:28:46,901 copying kage/indexing/tricky_variants.py -> build/lib/kage/indexing 2025-03-07T12:28:46,903 copying kage/indexing/kmer_scoring.py -> build/lib/kage/indexing 2025-03-07T12:28:46,905 copying kage/indexing/paths.py -> build/lib/kage/indexing 2025-03-07T12:28:46,908 copying kage/indexing/graph.py -> build/lib/kage/indexing 2025-03-07T12:28:46,910 copying kage/indexing/div.py -> build/lib/kage/indexing 2025-03-07T12:28:46,912 copying kage/indexing/sparse_haplotype_matrix.py -> build/lib/kage/indexing 2025-03-07T12:28:46,914 copying kage/indexing/signatures.py -> build/lib/kage/indexing 2025-03-07T12:28:46,917 copying kage/indexing/path_based_count_model.py -> build/lib/kage/indexing 2025-03-07T12:28:46,920 copying kage/indexing/main.py -> build/lib/kage/indexing 2025-03-07T12:28:46,923 creating build/lib/kage/preprocessing 2025-03-07T12:28:46,924 copying kage/preprocessing/__init__.py -> build/lib/kage/preprocessing 2025-03-07T12:28:46,925 copying kage/preprocessing/variants.py -> build/lib/kage/preprocessing 2025-03-07T12:28:46,929 creating build/lib/kage/modles 2025-03-07T12:28:46,930 copying kage/modles/__init__.py -> build/lib/kage/modles 2025-03-07T12:28:46,932 creating build/lib/kage/analysis 2025-03-07T12:28:46,933 copying kage/analysis/variant_kmer_analyser.py -> build/lib/kage/analysis 2025-03-07T12:28:46,935 copying kage/analysis/__init__.py -> build/lib/kage/analysis 2025-03-07T12:28:46,937 copying kage/analysis/analysis.py -> build/lib/kage/analysis 2025-03-07T12:28:46,939 copying kage/analysis/genotype_accuracy.py -> build/lib/kage/analysis 2025-03-07T12:28:46,942 copying kage/analysis/debugging.py -> build/lib/kage/analysis 2025-03-07T12:28:46,945 creating build/lib/kage/simulation 2025-03-07T12:28:46,946 copying kage/simulation/read_simulation.py -> build/lib/kage/simulation 2025-03-07T12:28:46,948 copying kage/simulation/__init__.py -> build/lib/kage/simulation 2025-03-07T12:28:46,950 copying kage/simulation/simulation.py -> build/lib/kage/simulation 2025-03-07T12:28:46,952 creating build/lib/kage/glimpse 2025-03-07T12:28:46,953 copying kage/glimpse/__init__.py -> build/lib/kage/glimpse 2025-03-07T12:28:46,955 copying kage/glimpse/glimpse_wrapper.py -> build/lib/kage/glimpse 2025-03-07T12:28:46,993 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-07T12:28:46,994 !! 2025-03-07T12:28:46,995 ******************************************************************************** 2025-03-07T12:28:46,996 Please avoid running ``setup.py`` directly. 2025-03-07T12:28:46,996 Instead, use pypa/build, pypa/installer or other 2025-03-07T12:28:46,997 standards-based tools. 2025-03-07T12:28:46,998 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-07T12:28:46,999 ******************************************************************************** 2025-03-07T12:28:47,000 !! 2025-03-07T12:28:47,001 self.initialize_options() 2025-03-07T12:28:47,021 installing to build/bdist.linux-armv7l/wheel 2025-03-07T12:28:47,022 running install 2025-03-07T12:28:47,044 running install_lib 2025-03-07T12:28:47,071 creating build/bdist.linux-armv7l/wheel 2025-03-07T12:28:47,073 creating build/bdist.linux-armv7l/wheel/kage 2025-03-07T12:28:47,074 creating build/bdist.linux-armv7l/wheel/kage/genotyping 2025-03-07T12:28:47,076 copying build/lib/kage/genotyping/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/./kage/genotyping 2025-03-07T12:28:47,078 copying build/lib/kage/genotyping/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/genotyping 2025-03-07T12:28:47,079 copying build/lib/kage/genotyping/multiallelic.py -> build/bdist.linux-armv7l/wheel/./kage/genotyping 2025-03-07T12:28:47,082 creating build/bdist.linux-armv7l/wheel/kage/models 2025-03-07T12:28:47,083 copying build/lib/kage/models/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,084 copying build/lib/kage/models/mapping_model.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,086 copying build/lib/kage/models/models.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,089 copying build/lib/kage/models/helper_model.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,091 copying build/lib/kage/models/joint_distribution.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,093 copying build/lib/kage/models/helper_index.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,095 copying build/lib/kage/models/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,097 copying build/lib/kage/models/sampling_combo_model.py -> build/bdist.linux-armv7l/wheel/./kage/models 2025-03-07T12:28:47,099 copying build/lib/kage/configuration.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,101 copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,103 creating build/bdist.linux-armv7l/wheel/kage/benchmarking 2025-03-07T12:28:47,104 copying build/lib/kage/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/benchmarking 2025-03-07T12:28:47,106 copying build/lib/kage/benchmarking/vcf_preprocessing.py -> build/bdist.linux-armv7l/wheel/./kage/benchmarking 2025-03-07T12:28:47,108 copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,110 copying build/lib/kage/io.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,113 creating build/bdist.linux-armv7l/wheel/kage/indexing 2025-03-07T12:28:47,114 copying build/lib/kage/indexing/path_variant_indexing.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,117 copying build/lib/kage/indexing/modulo_filter.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,119 copying build/lib/kage/indexing/index_bundle.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,120 copying build/lib/kage/indexing/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,122 copying build/lib/kage/indexing/tricky_variants.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,125 copying build/lib/kage/indexing/kmer_scoring.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,127 copying build/lib/kage/indexing/paths.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,129 copying build/lib/kage/indexing/graph.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,132 copying build/lib/kage/indexing/div.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,134 copying build/lib/kage/indexing/sparse_haplotype_matrix.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,136 copying build/lib/kage/indexing/signatures.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,139 copying build/lib/kage/indexing/path_based_count_model.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,142 copying build/lib/kage/indexing/main.py -> build/bdist.linux-armv7l/wheel/./kage/indexing 2025-03-07T12:28:47,145 creating build/bdist.linux-armv7l/wheel/kage/preprocessing 2025-03-07T12:28:47,146 copying build/lib/kage/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/preprocessing 2025-03-07T12:28:47,148 copying build/lib/kage/preprocessing/variants.py -> build/bdist.linux-armv7l/wheel/./kage/preprocessing 2025-03-07T12:28:47,151 creating build/bdist.linux-armv7l/wheel/kage/modles 2025-03-07T12:28:47,153 copying build/lib/kage/modles/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/modles 2025-03-07T12:28:47,155 creating build/bdist.linux-armv7l/wheel/kage/analysis 2025-03-07T12:28:47,156 copying build/lib/kage/analysis/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/./kage/analysis 2025-03-07T12:28:47,158 copying build/lib/kage/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/analysis 2025-03-07T12:28:47,159 copying build/lib/kage/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/./kage/analysis 2025-03-07T12:28:47,161 copying build/lib/kage/analysis/genotype_accuracy.py -> build/bdist.linux-armv7l/wheel/./kage/analysis 2025-03-07T12:28:47,164 copying build/lib/kage/analysis/debugging.py -> build/bdist.linux-armv7l/wheel/./kage/analysis 2025-03-07T12:28:47,166 copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,168 copying build/lib/kage/naive_genotyper.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,170 copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,173 creating build/bdist.linux-armv7l/wheel/kage/simulation 2025-03-07T12:28:47,174 copying build/lib/kage/simulation/read_simulation.py -> build/bdist.linux-armv7l/wheel/./kage/simulation 2025-03-07T12:28:47,177 copying build/lib/kage/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/simulation 2025-03-07T12:28:47,178 copying build/lib/kage/simulation/simulation.py -> build/bdist.linux-armv7l/wheel/./kage/simulation 2025-03-07T12:28:47,181 creating build/bdist.linux-armv7l/wheel/kage/glimpse 2025-03-07T12:28:47,182 copying build/lib/kage/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/./kage/glimpse 2025-03-07T12:28:47,184 copying build/lib/kage/glimpse/glimpse_wrapper.py -> build/bdist.linux-armv7l/wheel/./kage/glimpse 2025-03-07T12:28:47,186 copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/./kage 2025-03-07T12:28:47,188 running install_egg_info 2025-03-07T12:28:47,221 running egg_info 2025-03-07T12:28:47,247 writing kage_genotyper.egg-info/PKG-INFO 2025-03-07T12:28:47,250 writing dependency_links to kage_genotyper.egg-info/dependency_links.txt 2025-03-07T12:28:47,251 writing entry points to kage_genotyper.egg-info/entry_points.txt 2025-03-07T12:28:47,253 writing requirements to kage_genotyper.egg-info/requires.txt 2025-03-07T12:28:47,254 writing top-level names to kage_genotyper.egg-info/top_level.txt 2025-03-07T12:28:47,292 reading manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2025-03-07T12:28:47,305 adding license file 'LICENSE' 2025-03-07T12:28:47,312 writing manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2025-03-07T12:28:47,313 Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/./kage_genotyper-2.0.7-py3.11.egg-info 2025-03-07T12:28:47,325 running install_scripts 2025-03-07T12:28:47,344 creating build/bdist.linux-armv7l/wheel/kage_genotyper-2.0.7.dist-info/WHEEL 2025-03-07T12:28:47,346 creating '/tmp/pip-wheel-7m3fr4f2/kage_genotyper-2.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-07T12:28:47,349 adding 'kage/__init__.py' 2025-03-07T12:28:47,352 adding 'kage/command_line_interface.py' 2025-03-07T12:28:47,353 adding 'kage/configuration.py' 2025-03-07T12:28:47,355 adding 'kage/io.py' 2025-03-07T12:28:47,357 adding 'kage/naive_genotyper.py' 2025-03-07T12:28:47,358 adding 'kage/node_counts.py' 2025-03-07T12:28:47,359 adding 'kage/util.py' 2025-03-07T12:28:47,361 adding 'kage/variant_filtering.py' 2025-03-07T12:28:47,362 adding 'kage/analysis/__init__.py' 2025-03-07T12:28:47,364 adding 'kage/analysis/analysis.py' 2025-03-07T12:28:47,366 adding 'kage/analysis/debugging.py' 2025-03-07T12:28:47,369 adding 'kage/analysis/genotype_accuracy.py' 2025-03-07T12:28:47,370 adding 'kage/analysis/variant_kmer_analyser.py' 2025-03-07T12:28:47,371 adding 'kage/benchmarking/__init__.py' 2025-03-07T12:28:47,373 adding 'kage/benchmarking/vcf_preprocessing.py' 2025-03-07T12:28:47,375 adding 'kage/genotyping/__init__.py' 2025-03-07T12:28:47,376 adding 'kage/genotyping/combination_model_genotyper.py' 2025-03-07T12:28:47,377 adding 'kage/genotyping/multiallelic.py' 2025-03-07T12:28:47,379 adding 'kage/glimpse/__init__.py' 2025-03-07T12:28:47,381 adding 'kage/glimpse/glimpse_wrapper.py' 2025-03-07T12:28:47,382 adding 'kage/indexing/__init__.py' 2025-03-07T12:28:47,383 adding 'kage/indexing/div.py' 2025-03-07T12:28:47,386 adding 'kage/indexing/graph.py' 2025-03-07T12:28:47,387 adding 'kage/indexing/index_bundle.py' 2025-03-07T12:28:47,389 adding 'kage/indexing/kmer_scoring.py' 2025-03-07T12:28:47,391 adding 'kage/indexing/main.py' 2025-03-07T12:28:47,392 adding 'kage/indexing/modulo_filter.py' 2025-03-07T12:28:47,394 adding 'kage/indexing/path_based_count_model.py' 2025-03-07T12:28:47,396 adding 'kage/indexing/path_variant_indexing.py' 2025-03-07T12:28:47,399 adding 'kage/indexing/paths.py' 2025-03-07T12:28:47,406 adding 'kage/indexing/signatures.py' 2025-03-07T12:28:47,408 adding 'kage/indexing/sparse_haplotype_matrix.py' 2025-03-07T12:28:47,409 adding 'kage/indexing/tricky_variants.py' 2025-03-07T12:28:47,411 adding 'kage/models/__init__.py' 2025-03-07T12:28:47,413 adding 'kage/models/helper_index.py' 2025-03-07T12:28:47,414 adding 'kage/models/helper_index_using_duplicate_counts.py' 2025-03-07T12:28:47,416 adding 'kage/models/helper_model.py' 2025-03-07T12:28:47,417 adding 'kage/models/joint_distribution.py' 2025-03-07T12:28:47,419 adding 'kage/models/mapping_model.py' 2025-03-07T12:28:47,420 adding 'kage/models/models.py' 2025-03-07T12:28:47,423 adding 'kage/models/sampling_combo_model.py' 2025-03-07T12:28:47,425 adding 'kage/modles/__init__.py' 2025-03-07T12:28:47,426 adding 'kage/preprocessing/__init__.py' 2025-03-07T12:28:47,431 adding 'kage/preprocessing/variants.py' 2025-03-07T12:28:47,433 adding 'kage/simulation/__init__.py' 2025-03-07T12:28:47,434 adding 'kage/simulation/read_simulation.py' 2025-03-07T12:28:47,436 adding 'kage/simulation/simulation.py' 2025-03-07T12:28:47,443 adding 'kage_genotyper-2.0.7.dist-info/LICENSE' 2025-03-07T12:28:47,444 adding 'kage_genotyper-2.0.7.dist-info/METADATA' 2025-03-07T12:28:47,445 adding 'kage_genotyper-2.0.7.dist-info/WHEEL' 2025-03-07T12:28:47,446 adding 'kage_genotyper-2.0.7.dist-info/entry_points.txt' 2025-03-07T12:28:47,447 adding 'kage_genotyper-2.0.7.dist-info/top_level.txt' 2025-03-07T12:28:47,448 adding 'kage_genotyper-2.0.7.dist-info/RECORD' 2025-03-07T12:28:47,451 removing build/bdist.linux-armv7l/wheel 2025-03-07T12:28:47,577 Building wheel for kage-genotyper (setup.py): finished with status 'done' 2025-03-07T12:28:47,581 Created wheel for kage-genotyper: filename=kage_genotyper-2.0.7-py3-none-any.whl size=123152 sha256=eaca6d46d0608e9579de1bf982843945ed5aab95a4b5066a9516eece41eda243 2025-03-07T12:28:47,582 Stored in directory: /tmp/pip-ephem-wheel-cache-b0ubnb17/wheels/b2/53/e4/c4857a340da43ebdbe5091dccba5ac6d4c9d942b47193f24b9 2025-03-07T12:28:47,594 Successfully built kage-genotyper 2025-03-07T12:28:47,600 Removed build tracker: '/tmp/pip-build-tracker-cblahbt_'