2025-03-07T21:10:09,937 Created temporary directory: /tmp/pip-build-tracker-q8bpbmym
2025-03-07T21:10:09,938 Initialized build tracking at /tmp/pip-build-tracker-q8bpbmym
2025-03-07T21:10:09,939 Created build tracker: /tmp/pip-build-tracker-q8bpbmym
2025-03-07T21:10:09,939 Entered build tracker: /tmp/pip-build-tracker-q8bpbmym
2025-03-07T21:10:09,940 Created temporary directory: /tmp/pip-wheel-13qx3u1a
2025-03-07T21:10:09,944 Created temporary directory: /tmp/pip-ephem-wheel-cache-hw89afq_
2025-03-07T21:10:09,990 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-03-07T21:10:09,993 2 location(s) to search for versions of taxtastic:
2025-03-07T21:10:09,993 * https://pypi.org/simple/taxtastic/
2025-03-07T21:10:09,993 * https://www.piwheels.org/simple/taxtastic/
2025-03-07T21:10:09,994 Fetching project page and analyzing links: https://pypi.org/simple/taxtastic/
2025-03-07T21:10:09,994 Getting page https://pypi.org/simple/taxtastic/
2025-03-07T21:10:09,996 Found index url https://pypi.org/simple/
2025-03-07T21:10:10,215 Fetched page https://pypi.org/simple/taxtastic/ as application/vnd.pypi.simple.v1+json
2025-03-07T21:10:10,221   Found link https://files.pythonhosted.org/packages/ca/43/50f961a308692ec4a28cad342bd608b7efb5ca6626f6cb697b233a61d880/taxtastic-0.3.2.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.3.2
2025-03-07T21:10:10,222   Found link https://files.pythonhosted.org/packages/c9/43/e095da8cfc87c21c2ccbec770f86beb4f36eb80f63eb911ba7d4562fa96f/taxtastic-0.4.0.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.4.0
2025-03-07T21:10:10,223   Found link https://files.pythonhosted.org/packages/cf/aa/5eba8333044ae88e206dd3eba41cee25913e3b71c2d32f27e8ee2aca1476/taxtastic-0.5.0.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.5.0
2025-03-07T21:10:10,223   Found link https://files.pythonhosted.org/packages/b2/81/c9ed50ac10c7030da23bc8161bc06cd31ceea70e62fa046d11fe800bc01c/taxtastic-0.5.1.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.5.1
2025-03-07T21:10:10,224   Found link https://files.pythonhosted.org/packages/bb/10/ee4831097b5f421dfdcddc8cd7b9b7057acd87c9163cce860d9d8984a02d/taxtastic-0.5.2.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.5.2
2025-03-07T21:10:10,225   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/7f/48/c397e01cb14e52fa63a5456034d644a918fe983f02f81c6bccd28970d2d2/taxtastic-0.5.3-py2-none-any.whl (from https://pypi.org/simple/taxtastic/)
2025-03-07T21:10:10,225   Found link https://files.pythonhosted.org/packages/d0/c3/6b258c510dba140091f28e17f169a6f1d5c38aee23c28bb7d6d31f62c3fe/taxtastic-0.5.3.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.5.3
2025-03-07T21:10:10,226   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/98/27/f07ddd2e1497af6963c4c1afd99f559e877bb200c565f6b8468185ceee84/taxtastic-0.5.4-py2-none-any.whl (from https://pypi.org/simple/taxtastic/)
2025-03-07T21:10:10,227   Found link https://files.pythonhosted.org/packages/de/e5/6a27a42e42e25d3d1d4ca9aa7fa6a20a32dd1669e7750823a4e2f5f4712b/taxtastic-0.5.4.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.5.4
2025-03-07T21:10:10,227   Found link https://files.pythonhosted.org/packages/3a/ab/d4d047439bcc971dcaf229c15b1689b82b8a15a3a93a4e93667132100be3/taxtastic-0.8.1.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.1
2025-03-07T21:10:10,228   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/60/2a/7e968f2153f3c61e70bd061225d0d783e31f9ac727399e130bc344c30fbe/taxtastic-0.8.2-py2-none-any.whl (from https://pypi.org/simple/taxtastic/)
2025-03-07T21:10:10,228   Found link https://files.pythonhosted.org/packages/a8/8f/a691dd64801f5aee8b6bd20cdb8e8c3564acd7700eb2b34c8ac88ab0b52a/taxtastic-0.8.2.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.2
2025-03-07T21:10:10,229   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/8e/96/cae8442db164ddc3a3ee174dff6b2651c0537ceb7e792c61f029262b134a/taxtastic-0.8.3-py2-none-any.whl (from https://pypi.org/simple/taxtastic/)
2025-03-07T21:10:10,230   Found link https://files.pythonhosted.org/packages/a3/38/58a40c13ea4e2e563b3c29d1c85d30998adbdd59840d41c3b91de57d7732/taxtastic-0.8.3.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.3
2025-03-07T21:10:10,231   Found link https://files.pythonhosted.org/packages/d4/ca/2f00085edbcade9cd2f6a16fe2373788d21e6ed903908a025b326d71b709/taxtastic-0.8.4.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.4
2025-03-07T21:10:10,231   Found link https://files.pythonhosted.org/packages/fd/82/bfc0b0b2d407567d36e37d014e2a32c4041ed0c0c932f3d2f50c8501f6f4/taxtastic-0.8.5.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.5
2025-03-07T21:10:10,232   Found link https://files.pythonhosted.org/packages/2a/0e/c7cd58bbe3a28c28065de373094b3382d8e04340f342688965cfb4fbb85f/taxtastic-0.8.9.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.9
2025-03-07T21:10:10,232   Found link https://files.pythonhosted.org/packages/7c/74/feea0e2ce4e0898e6c7371d8299de959ad496380074346d8d18a16920e97/taxtastic-0.8.11.tar.gz (from https://pypi.org/simple/taxtastic/), version: 0.8.11
2025-03-07T21:10:10,233   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/60/2e/bfe1943043e48c672c66bb7514521846f5b1ce9389628a72c1dab22928aa/taxtastic-0.9.0-py3-none-any.whl (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,234   Found link https://files.pythonhosted.org/packages/4c/6a/c5b4bd7376718c9443aa283fa8f134fab570ed3770d6d89f5ed7dbf14854/taxtastic-0.9.0.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4), version: 0.9.0
2025-03-07T21:10:10,235   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/40/c3/1a1ea56fed23d73916e7e6823c3412ff24eb1d277a8003865b7596940676/taxtastic-0.9.1-py3-none-any.whl (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,235   Found link https://files.pythonhosted.org/packages/7b/6c/c418efa114c934a0fad64049fee871ee2d7add2ac7423e03fca76089e17f/taxtastic-0.9.1.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4), version: 0.9.1
2025-03-07T21:10:10,236   Found link https://files.pythonhosted.org/packages/4f/2e/d6317cf64bd1b70b95e2ee9a0d7e54cbe1201cf8e4d792a29c3fd1e4a21a/taxtastic-0.9.2.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4), version: 0.9.2
2025-03-07T21:10:10,237   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/be/2f/ab9cf616974b54c657395a7c75e1c0260844a940c78b371e7b8db317d634/taxtastic-0.9.3-py3-none-any.whl (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,238   Found link https://files.pythonhosted.org/packages/a1/ca/7ed1bab3ca1665245efa8a864737b3e88290ad2dee736f8e0b6d0860c888/taxtastic-0.9.3.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.4), version: 0.9.3
2025-03-07T21:10:10,239   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/c2/58/7887a54b76a4049739d65251b06c3fc653d882e099ec5142485421181e9f/taxtastic-0.10.0-py3-none-any.whl (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.8)
2025-03-07T21:10:10,240   Found link https://files.pythonhosted.org/packages/7f/8a/49c16e64bc69a043d393c648336985a06c4b5dc1ac18598c32f0c8a35553/taxtastic-0.10.0.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.8), version: 0.10.0
2025-03-07T21:10:10,240   Skipping link: No binaries permitted for taxtastic: https://files.pythonhosted.org/packages/df/8b/6e7f7748e680bb154a5dc76327dcabfcc213c790e5354d9712f572fb7023/taxtastic-0.11.0-py3-none-any.whl (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.8)
2025-03-07T21:10:10,242   Found link https://files.pythonhosted.org/packages/06/62/54b2639d38332cd675ea272b6acdbb071e8932f989f50a54e6d043da9c0d/taxtastic-0.11.0.tar.gz (from https://pypi.org/simple/taxtastic/) (requires-python:>=3.8), version: 0.11.0
2025-03-07T21:10:10,242 Fetching project page and analyzing links: https://www.piwheels.org/simple/taxtastic/
2025-03-07T21:10:10,243 Getting page https://www.piwheels.org/simple/taxtastic/
2025-03-07T21:10:10,245 Found index url https://www.piwheels.org/simple/
2025-03-07T21:10:10,416 Fetched page https://www.piwheels.org/simple/taxtastic/ as text/html
2025-03-07T21:10:10,419   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.10.0-py3-none-any.whl#sha256=fb03a3ead7e4721e61a926d8cf84fd2939e17ddd1761cb3125429cf335a628d8 (from https://www.piwheels.org/simple/taxtastic/) (requires-python:>=3.8)
2025-03-07T21:10:10,420   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.9.3-py3-none-any.whl#sha256=834c1c8c43d234547cff70caccf84cbd10889e5836d6e2126206c5d3ea636591 (from https://www.piwheels.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,420   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.9.2-py3-none-any.whl#sha256=bdc1492460229f863642e62801affe63da4e1c081ef4004caed02de4e7fb3b45 (from https://www.piwheels.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,421   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.9.1-py3-none-any.whl#sha256=5d584e1432968880175dcf6af8f907ec28455943409d7f83bd699ed571771707 (from https://www.piwheels.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,421   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.9.0-py3-none-any.whl#sha256=d0e7aab5e2a8e1488d3c1084067cc3e463e877587c4b68105def278aead941dc (from https://www.piwheels.org/simple/taxtastic/) (requires-python:>=3.4)
2025-03-07T21:10:10,422   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.8.11-py3-none-any.whl#sha256=e5d654882916541859b32796744ed8fb4bf68957620e1c1abb6fbdb386bb5ece (from https://www.piwheels.org/simple/taxtastic/)
2025-03-07T21:10:10,422   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.8.9-py3-none-any.whl#sha256=97c23a77b10bcf8c3cf4e610cc2f1096fd2011d7bbc6847ea673d944dc8a7569 (from https://www.piwheels.org/simple/taxtastic/)
2025-03-07T21:10:10,423   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.8.5-py3-none-any.whl#sha256=f8a250c6bd310a4fd9079512af295e77d9ca81d645c86e11ed5848dc9430aa4d (from https://www.piwheels.org/simple/taxtastic/)
2025-03-07T21:10:10,423   Skipping link: No binaries permitted for taxtastic: https://www.piwheels.org/simple/taxtastic/taxtastic-0.8.4-py3-none-any.whl#sha256=504b911c713be71fa69299e981fa52d62fa901192c07d6e6d0d3cbd6f8bc9cb9 (from https://www.piwheels.org/simple/taxtastic/)
2025-03-07T21:10:10,424 Skipping link: not a file: https://www.piwheels.org/simple/taxtastic/
2025-03-07T21:10:10,424 Skipping link: not a file: https://pypi.org/simple/taxtastic/
2025-03-07T21:10:10,446 Given no hashes to check 1 links for project 'taxtastic': discarding no candidates
2025-03-07T21:10:10,448 Collecting taxtastic==0.11.0
2025-03-07T21:10:10,450   Created temporary directory: /tmp/pip-unpack-n0h_rmvj
2025-03-07T21:10:10,663   Downloading taxtastic-0.11.0.tar.gz (83 kB)
2025-03-07T21:10:10,856   Added taxtastic==0.11.0 from https://files.pythonhosted.org/packages/06/62/54b2639d38332cd675ea272b6acdbb071e8932f989f50a54e6d043da9c0d/taxtastic-0.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-q8bpbmym'
2025-03-07T21:10:10,859   Running setup.py (path:/tmp/pip-wheel-13qx3u1a/taxtastic_95cc7fc31e15409ab4e7e143ed92b7af/setup.py) egg_info for package taxtastic
2025-03-07T21:10:10,860   Created temporary directory: /tmp/pip-pip-egg-info-62t6u2dv
2025-03-07T21:10:10,860   Preparing metadata (setup.py): started
2025-03-07T21:10:10,861   Running command python setup.py egg_info
2025-03-07T21:10:11,466   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
2025-03-07T21:10:11,466     warnings.warn(msg)
2025-03-07T21:10:12,006   running egg_info
2025-03-07T21:10:12,034   creating /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info
2025-03-07T21:10:12,035   writing /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/PKG-INFO
2025-03-07T21:10:12,038   writing dependency_links to /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/dependency_links.txt
2025-03-07T21:10:12,040   writing entry points to /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/entry_points.txt
2025-03-07T21:10:12,041   writing requirements to /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/requires.txt
2025-03-07T21:10:12,043   writing top-level names to /tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/top_level.txt
2025-03-07T21:10:12,044   writing manifest file '/tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/SOURCES.txt'
2025-03-07T21:10:12,136   reading manifest file '/tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/SOURCES.txt'
2025-03-07T21:10:12,137   reading manifest template 'MANIFEST.in'
2025-03-07T21:10:12,152   warning: manifest_maker: MANIFEST.in, line 6: 'recursive-exclude' expects <dir> <pattern1> <pattern2> ...

2025-03-07T21:10:12,154   warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution
2025-03-07T21:10:12,154   warning: no previously-included files found matching 'Dockerfile'
2025-03-07T21:10:12,155   warning: no previously-included files found matching 'tests'
2025-03-07T21:10:12,155   warning: manifest_maker: MANIFEST.in, line 11: 'recursive-exclude' expects <dir> <pattern1> <pattern2> ...

2025-03-07T21:10:12,156   adding license file 'LICENSE'
2025-03-07T21:10:12,159   writing manifest file '/tmp/pip-pip-egg-info-62t6u2dv/taxtastic.egg-info/SOURCES.txt'
2025-03-07T21:10:12,270   Preparing metadata (setup.py): finished with status 'done'
2025-03-07T21:10:12,275   Source in /tmp/pip-wheel-13qx3u1a/taxtastic_95cc7fc31e15409ab4e7e143ed92b7af has version 0.11.0, which satisfies requirement taxtastic==0.11.0 from https://files.pythonhosted.org/packages/06/62/54b2639d38332cd675ea272b6acdbb071e8932f989f50a54e6d043da9c0d/taxtastic-0.11.0.tar.gz
2025-03-07T21:10:12,276   Removed taxtastic==0.11.0 from https://files.pythonhosted.org/packages/06/62/54b2639d38332cd675ea272b6acdbb071e8932f989f50a54e6d043da9c0d/taxtastic-0.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-q8bpbmym'
2025-03-07T21:10:12,283 Created temporary directory: /tmp/pip-unpack-5xjl6eav
2025-03-07T21:10:12,284 Created temporary directory: /tmp/pip-unpack-tpy6derd
2025-03-07T21:10:12,285 Building wheels for collected packages: taxtastic
2025-03-07T21:10:12,289   Created temporary directory: /tmp/pip-wheel-f43skbcm
2025-03-07T21:10:12,290   Building wheel for taxtastic (setup.py): started
2025-03-07T21:10:12,291   Destination directory: /tmp/pip-wheel-f43skbcm
2025-03-07T21:10:12,291   Running command python setup.py bdist_wheel
2025-03-07T21:10:12,874   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
2025-03-07T21:10:12,874     warnings.warn(msg)
2025-03-07T21:10:13,377   running bdist_wheel
2025-03-07T21:10:13,512   running build
2025-03-07T21:10:13,513   running build_py
2025-03-07T21:10:13,543   creating build/lib/taxtastic
2025-03-07T21:10:13,545   copying taxtastic/taxdb.py -> build/lib/taxtastic
2025-03-07T21:10:13,548   copying taxtastic/__init__.py -> build/lib/taxtastic
2025-03-07T21:10:13,550   copying taxtastic/taxonomy.py -> build/lib/taxtastic
2025-03-07T21:10:13,553   copying taxtastic/refpkg.py -> build/lib/taxtastic
2025-03-07T21:10:13,555   copying taxtastic/lonely.py -> build/lib/taxtastic
2025-03-07T21:10:13,558   copying taxtastic/taxtable.py -> build/lib/taxtastic
2025-03-07T21:10:13,560   copying taxtastic/ncbi.py -> build/lib/taxtastic
2025-03-07T21:10:13,563   copying taxtastic/utils.py -> build/lib/taxtastic
2025-03-07T21:10:13,567   creating build/lib/taxtastic/subcommands
2025-03-07T21:10:13,568   copying taxtastic/subcommands/namelookup.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,570   copying taxtastic/subcommands/lineage_table.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,572   copying taxtastic/subcommands/reroot.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,574   copying taxtastic/subcommands/strip.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,576   copying taxtastic/subcommands/add_nodes.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,578   copying taxtastic/subcommands/composition.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,579   copying taxtastic/subcommands/create.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,582   copying taxtastic/subcommands/update_taxids.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,584   copying taxtastic/subcommands/check.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,586   copying taxtastic/subcommands/rollback.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,588   copying taxtastic/subcommands/info.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,590   copying taxtastic/subcommands/get_lineage.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,592   copying taxtastic/subcommands/__init__.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,594   copying taxtastic/subcommands/taxids.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,596   copying taxtastic/subcommands/add_to_taxtable.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,598   copying taxtastic/subcommands/new_database.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,600   copying taxtastic/subcommands/refpkg_intersection.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,602   copying taxtastic/subcommands/extract_nodes.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,604   copying taxtastic/subcommands/rollforward.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,605   copying taxtastic/subcommands/lonelynodes.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,607   copying taxtastic/subcommands/findcompany.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,609   copying taxtastic/subcommands/taxtable.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,612   copying taxtastic/subcommands/named.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,614   copying taxtastic/subcommands/update.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,616   copying taxtastic/subcommands/rp.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,618   copying taxtastic/subcommands/get_descendants.py -> build/lib/taxtastic/subcommands
2025-03-07T21:10:13,621   creating build/lib/taxtastic/scripts
2025-03-07T21:10:13,622   copying taxtastic/scripts/__init__.py -> build/lib/taxtastic/scripts
2025-03-07T21:10:13,624   copying taxtastic/scripts/taxit.py -> build/lib/taxtastic/scripts
2025-03-07T21:10:13,626   running egg_info
2025-03-07T21:10:13,654   writing taxtastic.egg-info/PKG-INFO
2025-03-07T21:10:13,658   writing dependency_links to taxtastic.egg-info/dependency_links.txt
2025-03-07T21:10:13,659   writing entry points to taxtastic.egg-info/entry_points.txt
2025-03-07T21:10:13,661   writing requirements to taxtastic.egg-info/requires.txt
2025-03-07T21:10:13,662   writing top-level names to taxtastic.egg-info/top_level.txt
2025-03-07T21:10:13,696   reading manifest file 'taxtastic.egg-info/SOURCES.txt'
2025-03-07T21:10:13,700   reading manifest template 'MANIFEST.in'
2025-03-07T21:10:13,715   warning: manifest_maker: MANIFEST.in, line 6: 'recursive-exclude' expects <dir> <pattern1> <pattern2> ...

2025-03-07T21:10:13,716   warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution
2025-03-07T21:10:13,717   warning: no previously-included files found matching 'Dockerfile'
2025-03-07T21:10:13,717   warning: no previously-included files found matching 'tests'
2025-03-07T21:10:13,718   warning: manifest_maker: MANIFEST.in, line 11: 'recursive-exclude' expects <dir> <pattern1> <pattern2> ...

2025-03-07T21:10:13,719   adding license file 'LICENSE'
2025-03-07T21:10:13,723   writing manifest file 'taxtastic.egg-info/SOURCES.txt'
2025-03-07T21:10:13,725   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'taxtastic.data' is absent from the `packages` configuration.
2025-03-07T21:10:13,726   !!

2025-03-07T21:10:13,727           ********************************************************************************
2025-03-07T21:10:13,727           ############################
2025-03-07T21:10:13,728           # Package would be ignored #
2025-03-07T21:10:13,728           ############################
2025-03-07T21:10:13,729           Python recognizes 'taxtastic.data' as an importable package[^1],
2025-03-07T21:10:13,729           but it is absent from setuptools' `packages` configuration.

2025-03-07T21:10:13,730           This leads to an ambiguous overall configuration. If you want to distribute this
2025-03-07T21:10:13,731           package, please make sure that 'taxtastic.data' is explicitly added
2025-03-07T21:10:13,731           to the `packages` configuration field.

2025-03-07T21:10:13,732           Alternatively, you can also rely on setuptools' discovery methods
2025-03-07T21:10:13,733           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-03-07T21:10:13,734           instead of `find_packages(...)`/`find:`).

2025-03-07T21:10:13,735           You can read more about "package discovery" on setuptools documentation page:

2025-03-07T21:10:13,736           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-03-07T21:10:13,737           If you don't want 'taxtastic.data' to be distributed and are
2025-03-07T21:10:13,738           already explicitly excluding 'taxtastic.data' via
2025-03-07T21:10:13,738           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-03-07T21:10:13,739           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-03-07T21:10:13,739           combination with a more fine grained `package-data` configuration.

2025-03-07T21:10:13,740           You can read more about "package data files" on setuptools documentation page:

2025-03-07T21:10:13,741           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-03-07T21:10:13,743           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-03-07T21:10:13,743                 even if it does not contain any `.py` files.
2025-03-07T21:10:13,744                 On the other hand, currently there is no concept of package data
2025-03-07T21:10:13,744                 directory, all directories are treated like packages.
2025-03-07T21:10:13,745           ********************************************************************************

2025-03-07T21:10:13,746   !!
2025-03-07T21:10:13,747     check.warn(importable)
2025-03-07T21:10:13,748   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'taxtastic.templates' is absent from the `packages` configuration.
2025-03-07T21:10:13,748   !!

2025-03-07T21:10:13,749           ********************************************************************************
2025-03-07T21:10:13,750           ############################
2025-03-07T21:10:13,750           # Package would be ignored #
2025-03-07T21:10:13,751           ############################
2025-03-07T21:10:13,752           Python recognizes 'taxtastic.templates' as an importable package[^1],
2025-03-07T21:10:13,752           but it is absent from setuptools' `packages` configuration.

2025-03-07T21:10:13,753           This leads to an ambiguous overall configuration. If you want to distribute this
2025-03-07T21:10:13,754           package, please make sure that 'taxtastic.templates' is explicitly added
2025-03-07T21:10:13,754           to the `packages` configuration field.

2025-03-07T21:10:13,755           Alternatively, you can also rely on setuptools' discovery methods
2025-03-07T21:10:13,756           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-03-07T21:10:13,757           instead of `find_packages(...)`/`find:`).

2025-03-07T21:10:13,758           You can read more about "package discovery" on setuptools documentation page:

2025-03-07T21:10:13,759           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-03-07T21:10:13,760           If you don't want 'taxtastic.templates' to be distributed and are
2025-03-07T21:10:13,760           already explicitly excluding 'taxtastic.templates' via
2025-03-07T21:10:13,761           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-03-07T21:10:13,761           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-03-07T21:10:13,762           combination with a more fine grained `package-data` configuration.

2025-03-07T21:10:13,762           You can read more about "package data files" on setuptools documentation page:

2025-03-07T21:10:13,763           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-03-07T21:10:13,765           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-03-07T21:10:13,765                 even if it does not contain any `.py` files.
2025-03-07T21:10:13,766                 On the other hand, currently there is no concept of package data
2025-03-07T21:10:13,766                 directory, all directories are treated like packages.
2025-03-07T21:10:13,767           ********************************************************************************

2025-03-07T21:10:13,768   !!
2025-03-07T21:10:13,768     check.warn(importable)
2025-03-07T21:10:13,769   creating build/lib/taxtastic/data
2025-03-07T21:10:13,769   copying taxtastic/data/ver -> build/lib/taxtastic/data
2025-03-07T21:10:13,770   creating build/lib/taxtastic/templates
2025-03-07T21:10:13,771   copying taxtastic/templates/add_pg_constraints.sql -> build/lib/taxtastic/templates
2025-03-07T21:10:13,771   copying taxtastic/templates/add_pg_indexes.sql -> build/lib/taxtastic/templates
2025-03-07T21:10:13,772   copying taxtastic/templates/drop_pg_constraints.sql -> build/lib/taxtastic/templates
2025-03-07T21:10:13,776   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-03-07T21:10:13,777   !!

2025-03-07T21:10:13,778           ********************************************************************************
2025-03-07T21:10:13,778           Please avoid running ``setup.py`` directly.
2025-03-07T21:10:13,779           Instead, use pypa/build, pypa/installer or other
2025-03-07T21:10:13,779           standards-based tools.

2025-03-07T21:10:13,781           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-03-07T21:10:13,781           ********************************************************************************

2025-03-07T21:10:13,782   !!
2025-03-07T21:10:13,783     self.initialize_options()
2025-03-07T21:10:13,805   installing to build/bdist.linux-armv7l/wheel
2025-03-07T21:10:13,805   running install
2025-03-07T21:10:13,828   running install_lib
2025-03-07T21:10:13,857   creating build/bdist.linux-armv7l/wheel
2025-03-07T21:10:13,859   creating build/bdist.linux-armv7l/wheel/taxtastic
2025-03-07T21:10:13,861   creating build/bdist.linux-armv7l/wheel/taxtastic/templates
2025-03-07T21:10:13,863   copying build/lib/taxtastic/templates/drop_pg_constraints.sql -> build/bdist.linux-armv7l/wheel/./taxtastic/templates
2025-03-07T21:10:13,865   copying build/lib/taxtastic/templates/add_pg_indexes.sql -> build/bdist.linux-armv7l/wheel/./taxtastic/templates
2025-03-07T21:10:13,867   copying build/lib/taxtastic/templates/add_pg_constraints.sql -> build/bdist.linux-armv7l/wheel/./taxtastic/templates
2025-03-07T21:10:13,869   copying build/lib/taxtastic/taxdb.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,871   copying build/lib/taxtastic/__init__.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,873   copying build/lib/taxtastic/taxonomy.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,880   creating build/bdist.linux-armv7l/wheel/taxtastic/subcommands
2025-03-07T21:10:13,881   copying build/lib/taxtastic/subcommands/namelookup.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,883   copying build/lib/taxtastic/subcommands/lineage_table.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,886   copying build/lib/taxtastic/subcommands/reroot.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,887   copying build/lib/taxtastic/subcommands/strip.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,889   copying build/lib/taxtastic/subcommands/add_nodes.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,891   copying build/lib/taxtastic/subcommands/composition.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,893   copying build/lib/taxtastic/subcommands/create.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,895   copying build/lib/taxtastic/subcommands/update_taxids.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,898   copying build/lib/taxtastic/subcommands/check.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,900   copying build/lib/taxtastic/subcommands/rollback.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,901   copying build/lib/taxtastic/subcommands/info.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,903   copying build/lib/taxtastic/subcommands/get_lineage.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,905   copying build/lib/taxtastic/subcommands/__init__.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,907   copying build/lib/taxtastic/subcommands/taxids.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,910   copying build/lib/taxtastic/subcommands/add_to_taxtable.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,911   copying build/lib/taxtastic/subcommands/new_database.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,914   copying build/lib/taxtastic/subcommands/refpkg_intersection.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,916   copying build/lib/taxtastic/subcommands/extract_nodes.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,918   copying build/lib/taxtastic/subcommands/rollforward.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,920   copying build/lib/taxtastic/subcommands/lonelynodes.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,922   copying build/lib/taxtastic/subcommands/findcompany.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,924   copying build/lib/taxtastic/subcommands/taxtable.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,926   copying build/lib/taxtastic/subcommands/named.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,928   copying build/lib/taxtastic/subcommands/update.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,931   copying build/lib/taxtastic/subcommands/rp.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,933   copying build/lib/taxtastic/subcommands/get_descendants.py -> build/bdist.linux-armv7l/wheel/./taxtastic/subcommands
2025-03-07T21:10:13,935   creating build/bdist.linux-armv7l/wheel/taxtastic/scripts
2025-03-07T21:10:13,937   copying build/lib/taxtastic/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./taxtastic/scripts
2025-03-07T21:10:13,939   copying build/lib/taxtastic/scripts/taxit.py -> build/bdist.linux-armv7l/wheel/./taxtastic/scripts
2025-03-07T21:10:13,941   copying build/lib/taxtastic/refpkg.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,944   copying build/lib/taxtastic/lonely.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,947   creating build/bdist.linux-armv7l/wheel/taxtastic/data
2025-03-07T21:10:13,948   copying build/lib/taxtastic/data/ver -> build/bdist.linux-armv7l/wheel/./taxtastic/data
2025-03-07T21:10:13,950   copying build/lib/taxtastic/taxtable.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,953   copying build/lib/taxtastic/ncbi.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,957   copying build/lib/taxtastic/utils.py -> build/bdist.linux-armv7l/wheel/./taxtastic
2025-03-07T21:10:13,961   running install_egg_info
2025-03-07T21:10:13,995   Copying taxtastic.egg-info to build/bdist.linux-armv7l/wheel/./taxtastic-0.11.0-py3.11.egg-info
2025-03-07T21:10:14,008   running install_scripts
2025-03-07T21:10:14,027   creating build/bdist.linux-armv7l/wheel/taxtastic-0.11.0.dist-info/WHEEL
2025-03-07T21:10:14,030   creating '/tmp/pip-wheel-f43skbcm/taxtastic-0.11.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-03-07T21:10:14,032   adding 'taxtastic/__init__.py'
2025-03-07T21:10:14,033   adding 'taxtastic/lonely.py'
2025-03-07T21:10:14,036   adding 'taxtastic/ncbi.py'
2025-03-07T21:10:14,040   adding 'taxtastic/refpkg.py'
2025-03-07T21:10:14,042   adding 'taxtastic/taxdb.py'
2025-03-07T21:10:14,045   adding 'taxtastic/taxonomy.py'
2025-03-07T21:10:14,048   adding 'taxtastic/taxtable.py'
2025-03-07T21:10:14,050   adding 'taxtastic/utils.py'
2025-03-07T21:10:14,052   adding 'taxtastic/data/ver'
2025-03-07T21:10:14,053   adding 'taxtastic/scripts/__init__.py'
2025-03-07T21:10:14,055   adding 'taxtastic/scripts/taxit.py'
2025-03-07T21:10:14,057   adding 'taxtastic/subcommands/__init__.py'
2025-03-07T21:10:14,058   adding 'taxtastic/subcommands/add_nodes.py'
2025-03-07T21:10:14,060   adding 'taxtastic/subcommands/add_to_taxtable.py'
2025-03-07T21:10:14,061   adding 'taxtastic/subcommands/check.py'
2025-03-07T21:10:14,062   adding 'taxtastic/subcommands/composition.py'
2025-03-07T21:10:14,064   adding 'taxtastic/subcommands/create.py'
2025-03-07T21:10:14,065   adding 'taxtastic/subcommands/extract_nodes.py'
2025-03-07T21:10:14,067   adding 'taxtastic/subcommands/findcompany.py'
2025-03-07T21:10:14,068   adding 'taxtastic/subcommands/get_descendants.py'
2025-03-07T21:10:14,069   adding 'taxtastic/subcommands/get_lineage.py'
2025-03-07T21:10:14,071   adding 'taxtastic/subcommands/info.py'
2025-03-07T21:10:14,072   adding 'taxtastic/subcommands/lineage_table.py'
2025-03-07T21:10:14,074   adding 'taxtastic/subcommands/lonelynodes.py'
2025-03-07T21:10:14,075   adding 'taxtastic/subcommands/named.py'
2025-03-07T21:10:14,076   adding 'taxtastic/subcommands/namelookup.py'
2025-03-07T21:10:14,078   adding 'taxtastic/subcommands/new_database.py'
2025-03-07T21:10:14,080   adding 'taxtastic/subcommands/refpkg_intersection.py'
2025-03-07T21:10:14,081   adding 'taxtastic/subcommands/reroot.py'
2025-03-07T21:10:14,082   adding 'taxtastic/subcommands/rollback.py'
2025-03-07T21:10:14,084   adding 'taxtastic/subcommands/rollforward.py'
2025-03-07T21:10:14,085   adding 'taxtastic/subcommands/rp.py'
2025-03-07T21:10:14,086   adding 'taxtastic/subcommands/strip.py'
2025-03-07T21:10:14,088   adding 'taxtastic/subcommands/taxids.py'
2025-03-07T21:10:14,089   adding 'taxtastic/subcommands/taxtable.py'
2025-03-07T21:10:14,091   adding 'taxtastic/subcommands/update.py'
2025-03-07T21:10:14,092   adding 'taxtastic/subcommands/update_taxids.py'
2025-03-07T21:10:14,094   adding 'taxtastic/templates/add_pg_constraints.sql'
2025-03-07T21:10:14,096   adding 'taxtastic/templates/add_pg_indexes.sql'
2025-03-07T21:10:14,097   adding 'taxtastic/templates/drop_pg_constraints.sql'
2025-03-07T21:10:14,104   adding 'taxtastic-0.11.0.dist-info/LICENSE'
2025-03-07T21:10:14,106   adding 'taxtastic-0.11.0.dist-info/METADATA'
2025-03-07T21:10:14,106   adding 'taxtastic-0.11.0.dist-info/WHEEL'
2025-03-07T21:10:14,107   adding 'taxtastic-0.11.0.dist-info/entry_points.txt'
2025-03-07T21:10:14,108   adding 'taxtastic-0.11.0.dist-info/top_level.txt'
2025-03-07T21:10:14,109   adding 'taxtastic-0.11.0.dist-info/RECORD'
2025-03-07T21:10:14,112   removing build/bdist.linux-armv7l/wheel
2025-03-07T21:10:14,236   Building wheel for taxtastic (setup.py): finished with status 'done'
2025-03-07T21:10:14,239   Created wheel for taxtastic: filename=taxtastic-0.11.0-py3-none-any.whl size=93917 sha256=62ae9068b20d740eb2fd29c9520904339cd3299405c31ef13617fa773433927c
2025-03-07T21:10:14,241   Stored in directory: /tmp/pip-ephem-wheel-cache-hw89afq_/wheels/82/b8/9d/78d8b9d7308f0685a7b5a162da92b698016877df95d2229e4f
2025-03-07T21:10:14,254 Successfully built taxtastic
2025-03-07T21:10:14,259 Removed build tracker: '/tmp/pip-build-tracker-q8bpbmym'