2025-03-13T10:09:03,058 Created temporary directory: /tmp/pip-build-tracker-bntrp76c 2025-03-13T10:09:03,059 Initialized build tracking at /tmp/pip-build-tracker-bntrp76c 2025-03-13T10:09:03,059 Created build tracker: /tmp/pip-build-tracker-bntrp76c 2025-03-13T10:09:03,060 Entered build tracker: /tmp/pip-build-tracker-bntrp76c 2025-03-13T10:09:03,061 Created temporary directory: /tmp/pip-wheel-rfn5xgk6 2025-03-13T10:09:03,065 Created temporary directory: /tmp/pip-ephem-wheel-cache-xiazm1xe 2025-03-13T10:09:03,109 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-13T10:09:03,112 2 location(s) to search for versions of codon-bias: 2025-03-13T10:09:03,112 * https://pypi.org/simple/codon-bias/ 2025-03-13T10:09:03,112 * https://www.piwheels.org/simple/codon-bias/ 2025-03-13T10:09:03,113 Fetching project page and analyzing links: https://pypi.org/simple/codon-bias/ 2025-03-13T10:09:03,113 Getting page https://pypi.org/simple/codon-bias/ 2025-03-13T10:09:03,115 Found index url https://pypi.org/simple/ 2025-03-13T10:09:03,489 Fetched page https://pypi.org/simple/codon-bias/ as application/vnd.pypi.simple.v1+json 2025-03-13T10:09:03,494 Found link https://files.pythonhosted.org/packages/17/35/c2e6fcb73d84d1f5035be8092cee3b2af06af723b84352638447529d227c/codon-bias-0.1.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.1.0 2025-03-13T10:09:03,496 Found link https://files.pythonhosted.org/packages/cc/4e/11bcc186f4618fba833af761d7d3e7598b3c57ee4d11f7c733790bb5db20/codon-bias-0.2.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.2.0 2025-03-13T10:09:03,497 Found link https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.0 2025-03-13T10:09:03,498 Found link https://files.pythonhosted.org/packages/03/9f/c0df251e0912595b2d5e55e61832c650c2453f95d1559cb864654e286126/codon-bias-0.3.1.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.1 2025-03-13T10:09:03,500 Found link https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.2 2025-03-13T10:09:03,501 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/93/54/c8f62181dbbe091c5441fb92e6d1d2000499befd02cf6c8ca278c251b9fc/codon_bias-0.3.2-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,502 Found link https://files.pythonhosted.org/packages/02/8f/ed4f408503f5be22f9f8608d73594476f6c6512c1b150ed81249f1610430/codon-bias-0.3.3.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.3 2025-03-13T10:09:03,503 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/54/5d/abeb6cc53b8ef788668fe4020ea93e27bab526bdcba6e9194a64775597ea/codon_bias-0.3.3-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,504 Found link https://files.pythonhosted.org/packages/89/7f/3923ff70ab9f2e66517db8d4f27eb27713fbcfab4837dbf7783693b4558f/codon-bias-0.3.4.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.4 2025-03-13T10:09:03,505 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/57/e3/03da8ea2a470ebc1a867d90fd852b9665cfe7493e75932ac17c64e51511b/codon_bias-0.3.4-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,506 Found link https://files.pythonhosted.org/packages/fa/94/36029c1a3810cb7af2afca04a10008e393035188b0665c7e3a2840c91c01/codon-bias-0.3.5.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.5 2025-03-13T10:09:03,507 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/13/75/e7df417cbab2ce4957057f5c03806c4dd9cdcd2c6b598001de0263824114/codon_bias-0.3.5-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,508 Fetching project page and analyzing links: https://www.piwheels.org/simple/codon-bias/ 2025-03-13T10:09:03,509 Getting page https://www.piwheels.org/simple/codon-bias/ 2025-03-13T10:09:03,511 Found index url https://www.piwheels.org/simple/ 2025-03-13T10:09:03,720 Fetched page https://www.piwheels.org/simple/codon-bias/ as text/html 2025-03-13T10:09:03,723 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.4-py3-none-any.whl#sha256=df9d6b51ba629223226cfe1d8ab0e9b8a3eedca845e2bd427ce606b5e9ab5a72 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,723 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.3-py3-none-any.whl#sha256=4541985ec3d294224e4bc6d70289c3c0b10b63af3d72879a0786bcd7c3186182 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,724 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.2-py3-none-any.whl#sha256=7d19f79566e03ef7de880c81eea9659e1ab32de5f7c4cd6a42153627ed4d5c7b (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,724 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.1-py3-none-any.whl#sha256=26224a3549ff4812bed0265b7c0f62591b26ef8ff8ebfe7143916ff6f5ecea4c (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,725 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.0-py3-none-any.whl#sha256=d3bc123aaf0d19c1e1e0e294b090f33fb6784cdc5e271759162ecd80d8545586 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,725 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.2.0-py3-none-any.whl#sha256=54af1367ee5a968ac294644b098ab9e7b911598789435a083c12187ceeeb410e (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,726 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.1.0-py3-none-any.whl#sha256=45c2aa92ebf3bab8074d6a6e66799cacc106af5c5635b2eb1d6e2369f37a9ed8 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2025-03-13T10:09:03,726 Skipping link: not a file: https://www.piwheels.org/simple/codon-bias/ 2025-03-13T10:09:03,727 Skipping link: not a file: https://pypi.org/simple/codon-bias/ 2025-03-13T10:09:03,747 Given no hashes to check 1 links for project 'codon-bias': discarding no candidates 2025-03-13T10:09:03,749 Collecting codon-bias==0.3.5 2025-03-13T10:09:03,751 Created temporary directory: /tmp/pip-unpack-h_7kzemh 2025-03-13T10:09:03,893 Downloading codon-bias-0.3.5.tar.gz (104 kB) 2025-03-13T10:09:04,023 Added codon-bias==0.3.5 from https://files.pythonhosted.org/packages/fa/94/36029c1a3810cb7af2afca04a10008e393035188b0665c7e3a2840c91c01/codon-bias-0.3.5.tar.gz to build tracker '/tmp/pip-build-tracker-bntrp76c' 2025-03-13T10:09:04,025 Running setup.py (path:/tmp/pip-wheel-rfn5xgk6/codon-bias_1f09c1bb47e9447fa16883f768349a49/setup.py) egg_info for package codon-bias 2025-03-13T10:09:04,026 Created temporary directory: /tmp/pip-pip-egg-info-ttctabtn 2025-03-13T10:09:04,027 Preparing metadata (setup.py): started 2025-03-13T10:09:04,028 Running command python setup.py egg_info 2025-03-13T10:09:04,588 No `name` configuration, performing automatic discovery 2025-03-13T10:09:05,179 running egg_info 2025-03-13T10:09:05,207 creating /tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info 2025-03-13T10:09:05,208 writing /tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/PKG-INFO 2025-03-13T10:09:05,212 writing dependency_links to /tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/dependency_links.txt 2025-03-13T10:09:05,214 writing requirements to /tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/requires.txt 2025-03-13T10:09:05,215 writing top-level names to /tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/top_level.txt 2025-03-13T10:09:05,217 writing manifest file '/tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/SOURCES.txt' 2025-03-13T10:09:05,308 reading manifest file '/tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/SOURCES.txt' 2025-03-13T10:09:05,309 reading manifest template 'MANIFEST.in' 2025-03-13T10:09:05,310 adding license file 'LICENSE' 2025-03-13T10:09:05,313 writing manifest file '/tmp/pip-pip-egg-info-ttctabtn/codon_bias.egg-info/SOURCES.txt' 2025-03-13T10:09:05,423 Preparing metadata (setup.py): finished with status 'done' 2025-03-13T10:09:05,427 Source in /tmp/pip-wheel-rfn5xgk6/codon-bias_1f09c1bb47e9447fa16883f768349a49 has version 0.3.5, which satisfies requirement codon-bias==0.3.5 from https://files.pythonhosted.org/packages/fa/94/36029c1a3810cb7af2afca04a10008e393035188b0665c7e3a2840c91c01/codon-bias-0.3.5.tar.gz 2025-03-13T10:09:05,428 Removed codon-bias==0.3.5 from https://files.pythonhosted.org/packages/fa/94/36029c1a3810cb7af2afca04a10008e393035188b0665c7e3a2840c91c01/codon-bias-0.3.5.tar.gz from build tracker '/tmp/pip-build-tracker-bntrp76c' 2025-03-13T10:09:05,435 Created temporary directory: /tmp/pip-unpack-39fxm08w 2025-03-13T10:09:05,436 Created temporary directory: /tmp/pip-unpack-pmt680_m 2025-03-13T10:09:05,437 Building wheels for collected packages: codon-bias 2025-03-13T10:09:05,441 Created temporary directory: /tmp/pip-wheel-z3py4tq1 2025-03-13T10:09:05,442 Building wheel for codon-bias (setup.py): started 2025-03-13T10:09:05,443 Destination directory: /tmp/pip-wheel-z3py4tq1 2025-03-13T10:09:05,444 Running command python setup.py bdist_wheel 2025-03-13T10:09:05,952 No `name` configuration, performing automatic discovery 2025-03-13T10:09:06,491 running bdist_wheel 2025-03-13T10:09:06,620 running build 2025-03-13T10:09:06,621 running build_py 2025-03-13T10:09:06,650 creating build/lib/codonbias 2025-03-13T10:09:06,653 copying codonbias/pairwise.py -> build/lib/codonbias 2025-03-13T10:09:06,655 copying codonbias/scores.py -> build/lib/codonbias 2025-03-13T10:09:06,658 copying codonbias/__init__.py -> build/lib/codonbias 2025-03-13T10:09:06,660 copying codonbias/optimizers.py -> build/lib/codonbias 2025-03-13T10:09:06,662 copying codonbias/utils.py -> build/lib/codonbias 2025-03-13T10:09:06,665 copying codonbias/stats.py -> build/lib/codonbias 2025-03-13T10:09:06,667 copying codonbias/random.py -> build/lib/codonbias 2025-03-13T10:09:06,669 running egg_info 2025-03-13T10:09:06,696 writing codon_bias.egg-info/PKG-INFO 2025-03-13T10:09:06,699 writing dependency_links to codon_bias.egg-info/dependency_links.txt 2025-03-13T10:09:06,700 writing requirements to codon_bias.egg-info/requires.txt 2025-03-13T10:09:06,702 writing top-level names to codon_bias.egg-info/top_level.txt 2025-03-13T10:09:06,733 reading manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-03-13T10:09:06,736 reading manifest template 'MANIFEST.in' 2025-03-13T10:09:06,737 adding license file 'LICENSE' 2025-03-13T10:09:06,740 writing manifest file 'codon_bias.egg-info/SOURCES.txt' 2025-03-13T10:09:06,744 copying codonbias/genetic_code_ncbi.csv -> build/lib/codonbias 2025-03-13T10:09:06,746 copying codonbias/tAI_svalues_Tuller.csv -> build/lib/codonbias 2025-03-13T10:09:06,748 copying codonbias/tAI_svalues_dosReis.csv -> build/lib/codonbias 2025-03-13T10:09:06,777 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-13T10:09:06,777 !! 2025-03-13T10:09:06,778 ******************************************************************************** 2025-03-13T10:09:06,779 Please avoid running ``setup.py`` directly. 2025-03-13T10:09:06,780 Instead, use pypa/build, pypa/installer or other 2025-03-13T10:09:06,780 standards-based tools. 2025-03-13T10:09:06,782 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-13T10:09:06,782 ******************************************************************************** 2025-03-13T10:09:06,783 !! 2025-03-13T10:09:06,784 self.initialize_options() 2025-03-13T10:09:06,805 installing to build/bdist.linux-armv7l/wheel 2025-03-13T10:09:06,806 running install 2025-03-13T10:09:06,829 running install_lib 2025-03-13T10:09:06,856 creating build/bdist.linux-armv7l/wheel 2025-03-13T10:09:06,859 creating build/bdist.linux-armv7l/wheel/codonbias 2025-03-13T10:09:06,860 copying build/lib/codonbias/pairwise.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,862 copying build/lib/codonbias/scores.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,865 copying build/lib/codonbias/tAI_svalues_dosReis.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,867 copying build/lib/codonbias/__init__.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,869 copying build/lib/codonbias/optimizers.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,872 copying build/lib/codonbias/utils.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,874 copying build/lib/codonbias/genetic_code_ncbi.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,876 copying build/lib/codonbias/stats.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,878 copying build/lib/codonbias/tAI_svalues_Tuller.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,880 copying build/lib/codonbias/random.py -> build/bdist.linux-armv7l/wheel/./codonbias 2025-03-13T10:09:06,882 running install_egg_info 2025-03-13T10:09:06,915 Copying codon_bias.egg-info to build/bdist.linux-armv7l/wheel/./codon_bias-0.3.5-py3.11.egg-info 2025-03-13T10:09:06,925 running install_scripts 2025-03-13T10:09:06,937 creating build/bdist.linux-armv7l/wheel/codon_bias-0.3.5.dist-info/WHEEL 2025-03-13T10:09:06,940 creating '/tmp/pip-wheel-z3py4tq1/codon_bias-0.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-13T10:09:06,943 adding 'codonbias/__init__.py' 2025-03-13T10:09:06,944 adding 'codonbias/genetic_code_ncbi.csv' 2025-03-13T10:09:06,946 adding 'codonbias/optimizers.py' 2025-03-13T10:09:06,947 adding 'codonbias/pairwise.py' 2025-03-13T10:09:06,950 adding 'codonbias/random.py' 2025-03-13T10:09:06,955 adding 'codonbias/scores.py' 2025-03-13T10:09:06,957 adding 'codonbias/stats.py' 2025-03-13T10:09:06,958 adding 'codonbias/tAI_svalues_Tuller.csv' 2025-03-13T10:09:06,959 adding 'codonbias/tAI_svalues_dosReis.csv' 2025-03-13T10:09:06,961 adding 'codonbias/utils.py' 2025-03-13T10:09:06,962 adding 'codon_bias-0.3.5.dist-info/LICENSE' 2025-03-13T10:09:06,963 adding 'codon_bias-0.3.5.dist-info/METADATA' 2025-03-13T10:09:06,964 adding 'codon_bias-0.3.5.dist-info/WHEEL' 2025-03-13T10:09:06,965 adding 'codon_bias-0.3.5.dist-info/top_level.txt' 2025-03-13T10:09:06,966 adding 'codon_bias-0.3.5.dist-info/RECORD' 2025-03-13T10:09:06,967 removing build/bdist.linux-armv7l/wheel 2025-03-13T10:09:07,083 Building wheel for codon-bias (setup.py): finished with status 'done' 2025-03-13T10:09:07,086 Created wheel for codon-bias: filename=codon_bias-0.3.5-py3-none-any.whl size=28360 sha256=175e2981a0499fd4139c2b96877b8ac535afcb28368b5001c508076316f5af1b 2025-03-13T10:09:07,087 Stored in directory: /tmp/pip-ephem-wheel-cache-xiazm1xe/wheels/81/b0/cb/e209123be7368b954cb7199fa4cc4d47f12f1596ac0ad6435d 2025-03-13T10:09:07,097 Successfully built codon-bias 2025-03-13T10:09:07,101 Removed build tracker: '/tmp/pip-build-tracker-bntrp76c'