2025-03-17T05:15:47,496 Created temporary directory: /tmp/pip-build-tracker-5km5pstp 2025-03-17T05:15:47,497 Initialized build tracking at /tmp/pip-build-tracker-5km5pstp 2025-03-17T05:15:47,498 Created build tracker: /tmp/pip-build-tracker-5km5pstp 2025-03-17T05:15:47,498 Entered build tracker: /tmp/pip-build-tracker-5km5pstp 2025-03-17T05:15:47,499 Created temporary directory: /tmp/pip-wheel-2hwc_xgk 2025-03-17T05:15:47,503 Created temporary directory: /tmp/pip-ephem-wheel-cache-0aab_7_g 2025-03-17T05:15:47,547 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-17T05:15:47,550 2 location(s) to search for versions of concord-sc: 2025-03-17T05:15:47,550 * https://pypi.org/simple/concord-sc/ 2025-03-17T05:15:47,550 * https://www.piwheels.org/simple/concord-sc/ 2025-03-17T05:15:47,551 Fetching project page and analyzing links: https://pypi.org/simple/concord-sc/ 2025-03-17T05:15:47,552 Getting page https://pypi.org/simple/concord-sc/ 2025-03-17T05:15:47,553 Found index url https://pypi.org/simple/ 2025-03-17T05:15:47,773 Fetched page https://pypi.org/simple/concord-sc/ as application/vnd.pypi.simple.v1+json 2025-03-17T05:15:47,775 Skipping link: No binaries permitted for concord-sc: https://files.pythonhosted.org/packages/8e/ae/22e0b7b29b9c9c1a4ba16c91c5017059a7e48367aa4aaa9568e5cb525092/concord_sc-0.9.0-py3-none-any.whl (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,776 Found link https://files.pythonhosted.org/packages/10/58/79f4033f7fbc06d0c2c0a78ddb77debf2bee47eb6f914cadb8a00095e429/concord_sc-0.9.0.tar.gz (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7), version: 0.9.0 2025-03-17T05:15:47,777 Skipping link: No binaries permitted for concord-sc: https://files.pythonhosted.org/packages/4d/ab/8b89e30462620a4338e2337127525d69413ed90b969bcc61264c0b547e96/concord_sc-0.9.1-py3-none-any.whl (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,778 Found link https://files.pythonhosted.org/packages/0e/90/5ef728a9d2568db1d7e36c9df7af98b5b9d6e8b6a98bf1d3cd3d344ea449/concord_sc-0.9.1.tar.gz (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7), version: 0.9.1 2025-03-17T05:15:47,778 Skipping link: No binaries permitted for concord-sc: https://files.pythonhosted.org/packages/39/b3/6918c9ca5f3046e2bba415b978bc22d537cfd9c2a908b2489e4e3048d776/concord_sc-0.9.2-py3-none-any.whl (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,780 Found link https://files.pythonhosted.org/packages/55/01/1c16f7a11b80cc77bee4e5ed0827137b4e2e074a9668c0b44150d48afe74/concord_sc-0.9.2.tar.gz (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7), version: 0.9.2 2025-03-17T05:15:47,780 Skipping link: No binaries permitted for concord-sc: https://files.pythonhosted.org/packages/fb/f3/a0d8a696c17ad8aa9d3b89416e1938a05fe1d476d9a157a1ca88671d6bb1/concord_sc-0.9.3-py3-none-any.whl (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,781 Found link https://files.pythonhosted.org/packages/5b/40/2ec491724912d89c649155e8dbf06c4828fc6153a1b4fc56632e34302715/concord_sc-0.9.3.tar.gz (from https://pypi.org/simple/concord-sc/) (requires-python:>=3.7), version: 0.9.3 2025-03-17T05:15:47,782 Fetching project page and analyzing links: https://www.piwheels.org/simple/concord-sc/ 2025-03-17T05:15:47,783 Getting page https://www.piwheels.org/simple/concord-sc/ 2025-03-17T05:15:47,784 Found index url https://www.piwheels.org/simple/ 2025-03-17T05:15:47,948 Fetched page https://www.piwheels.org/simple/concord-sc/ as text/html 2025-03-17T05:15:47,950 Skipping link: No binaries permitted for concord-sc: https://www.piwheels.org/simple/concord-sc/concord_sc-0.9.1-py3-none-any.whl#sha256=3c3bb2a442ae740b18ca16a7516ab62e95c70d1f9d72ff7aa73af475afd0a252 (from https://www.piwheels.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,951 Skipping link: No binaries permitted for concord-sc: https://www.piwheels.org/simple/concord-sc/concord_sc-0.9.0-py3-none-any.whl#sha256=ef419331e55fc96cb1955de0be8fc00d13975ddc65b2ac9381510e06ff4412d8 (from https://www.piwheels.org/simple/concord-sc/) (requires-python:>=3.7) 2025-03-17T05:15:47,952 Skipping link: not a file: https://www.piwheels.org/simple/concord-sc/ 2025-03-17T05:15:47,953 Skipping link: not a file: https://pypi.org/simple/concord-sc/ 2025-03-17T05:15:47,973 Given no hashes to check 1 links for project 'concord-sc': discarding no candidates 2025-03-17T05:15:47,975 Collecting concord-sc==0.9.2 2025-03-17T05:15:47,977 Created temporary directory: /tmp/pip-unpack-nc_ork45 2025-03-17T05:15:48,200 Downloading concord_sc-0.9.2.tar.gz (122 kB) 2025-03-17T05:15:48,421 Added concord-sc==0.9.2 from https://files.pythonhosted.org/packages/55/01/1c16f7a11b80cc77bee4e5ed0827137b4e2e074a9668c0b44150d48afe74/concord_sc-0.9.2.tar.gz to build tracker '/tmp/pip-build-tracker-5km5pstp' 2025-03-17T05:15:48,423 Running setup.py (path:/tmp/pip-wheel-2hwc_xgk/concord-sc_db3e579e2fa54b989ebecda16f12d11e/setup.py) egg_info for package concord-sc 2025-03-17T05:15:48,424 Created temporary directory: /tmp/pip-pip-egg-info-jm7xpg7n 2025-03-17T05:15:48,425 Preparing metadata (setup.py): started 2025-03-17T05:15:48,426 Running command python setup.py egg_info 2025-03-17T05:15:49,539 running egg_info 2025-03-17T05:15:49,566 creating /tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info 2025-03-17T05:15:49,567 writing /tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/PKG-INFO 2025-03-17T05:15:49,573 writing dependency_links to /tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/dependency_links.txt 2025-03-17T05:15:49,577 writing requirements to /tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/requires.txt 2025-03-17T05:15:49,578 writing top-level names to /tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/top_level.txt 2025-03-17T05:15:49,579 writing manifest file '/tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/SOURCES.txt' 2025-03-17T05:15:49,668 reading manifest file '/tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/SOURCES.txt' 2025-03-17T05:15:49,669 adding license file 'LICENSE.md' 2025-03-17T05:15:49,673 writing manifest file '/tmp/pip-pip-egg-info-jm7xpg7n/concord_sc.egg-info/SOURCES.txt' 2025-03-17T05:15:49,784 Preparing metadata (setup.py): finished with status 'done' 2025-03-17T05:15:49,788 Source in /tmp/pip-wheel-2hwc_xgk/concord-sc_db3e579e2fa54b989ebecda16f12d11e has version 0.9.2, which satisfies requirement concord-sc==0.9.2 from https://files.pythonhosted.org/packages/55/01/1c16f7a11b80cc77bee4e5ed0827137b4e2e074a9668c0b44150d48afe74/concord_sc-0.9.2.tar.gz 2025-03-17T05:15:49,789 Removed concord-sc==0.9.2 from https://files.pythonhosted.org/packages/55/01/1c16f7a11b80cc77bee4e5ed0827137b4e2e074a9668c0b44150d48afe74/concord_sc-0.9.2.tar.gz from build tracker '/tmp/pip-build-tracker-5km5pstp' 2025-03-17T05:15:49,800 Created temporary directory: /tmp/pip-unpack-k23q9ou1 2025-03-17T05:15:49,801 Created temporary directory: /tmp/pip-unpack-ysxu0nna 2025-03-17T05:15:49,802 Building wheels for collected packages: concord-sc 2025-03-17T05:15:49,806 Created temporary directory: /tmp/pip-wheel-gq3_4unl 2025-03-17T05:15:49,806 Building wheel for concord-sc (setup.py): started 2025-03-17T05:15:49,807 Destination directory: /tmp/pip-wheel-gq3_4unl 2025-03-17T05:15:49,808 Running command python setup.py bdist_wheel 2025-03-17T05:15:50,827 running bdist_wheel 2025-03-17T05:15:50,957 running build 2025-03-17T05:15:50,958 running build_py 2025-03-17T05:15:50,987 creating build/lib/concord 2025-03-17T05:15:50,990 copying src/concord/__init__.py -> build/lib/concord 2025-03-17T05:15:50,992 copying src/concord/ul.py -> build/lib/concord 2025-03-17T05:15:50,994 copying src/concord/concord.py -> build/lib/concord 2025-03-17T05:15:50,997 copying src/concord/pl.py -> build/lib/concord 2025-03-17T05:15:50,999 copying src/concord/ml.py -> build/lib/concord 2025-03-17T05:15:51,002 creating build/lib/concord/utils 2025-03-17T05:15:51,003 copying src/concord/utils/geometry.py -> build/lib/concord/utils 2025-03-17T05:15:51,006 copying src/concord/utils/run_dim_reduction.py -> build/lib/concord/utils 2025-03-17T05:15:51,009 copying src/concord/utils/coverage_estimator.py -> build/lib/concord/utils 2025-03-17T05:15:51,010 copying src/concord/utils/evaluator.py -> build/lib/concord/utils 2025-03-17T05:15:51,012 copying src/concord/utils/importance_analysis.py -> build/lib/concord/utils 2025-03-17T05:15:51,014 copying src/concord/utils/cell_cycle.py -> build/lib/concord/utils 2025-03-17T05:15:51,016 copying src/concord/utils/preprocessor.py -> build/lib/concord/utils 2025-03-17T05:15:51,018 copying src/concord/utils/__init__.py -> build/lib/concord/utils 2025-03-17T05:15:51,020 copying src/concord/utils/io.py -> build/lib/concord/utils 2025-03-17T05:15:51,022 copying src/concord/utils/batch_analysis.py -> build/lib/concord/utils 2025-03-17T05:15:51,024 copying src/concord/utils/Hs_Mm_conversion.py -> build/lib/concord/utils 2025-03-17T05:15:51,026 copying src/concord/utils/run_integration_methods.py -> build/lib/concord/utils 2025-03-17T05:15:51,028 copying src/concord/utils/feature_selector.py -> build/lib/concord/utils 2025-03-17T05:15:51,031 copying src/concord/utils/path_analysis.py -> build/lib/concord/utils 2025-03-17T05:15:51,033 copying src/concord/utils/sparsity.py -> build/lib/concord/utils 2025-03-17T05:15:51,035 copying src/concord/utils/simulation.py -> build/lib/concord/utils 2025-03-17T05:15:51,038 copying src/concord/utils/cellxgene.py -> build/lib/concord/utils 2025-03-17T05:15:51,040 copying src/concord/utils/anndata_utils.py -> build/lib/concord/utils 2025-03-17T05:15:51,043 copying src/concord/utils/enrichment_analysis.py -> build/lib/concord/utils 2025-03-17T05:15:51,045 copying src/concord/utils/visCello.py -> build/lib/concord/utils 2025-03-17T05:15:51,047 copying src/concord/utils/tda.py -> build/lib/concord/utils 2025-03-17T05:15:51,050 copying src/concord/utils/doublet_utils.py -> build/lib/concord/utils 2025-03-17T05:15:51,052 copying src/concord/utils/other_util.py -> build/lib/concord/utils 2025-03-17T05:15:51,054 copying src/concord/utils/value_check.py -> build/lib/concord/utils 2025-03-17T05:15:51,056 copying src/concord/utils/estimate_aug_mask_prob.py -> build/lib/concord/utils 2025-03-17T05:15:51,058 copying src/concord/utils/timer.py -> build/lib/concord/utils 2025-03-17T05:15:51,060 copying src/concord/utils/benchmark.py -> build/lib/concord/utils 2025-03-17T05:15:51,063 creating build/lib/concord/model 2025-03-17T05:15:51,065 copying src/concord/model/chunkloader.py -> build/lib/concord/model 2025-03-17T05:15:51,067 copying src/concord/model/build_layer.py -> build/lib/concord/model 2025-03-17T05:15:51,069 copying src/concord/model/model.py -> build/lib/concord/model 2025-03-17T05:15:51,071 copying src/concord/model/knn.py -> build/lib/concord/model 2025-03-17T05:15:51,074 copying src/concord/model/__init__.py -> build/lib/concord/model 2025-03-17T05:15:51,076 copying src/concord/model/trainer.py -> build/lib/concord/model 2025-03-17T05:15:51,079 copying src/concord/model/loss.py -> build/lib/concord/model 2025-03-17T05:15:51,081 copying src/concord/model/sampler.py -> build/lib/concord/model 2025-03-17T05:15:51,083 copying src/concord/model/anndataset.py -> build/lib/concord/model 2025-03-17T05:15:51,086 copying src/concord/model/dataloader.py -> build/lib/concord/model 2025-03-17T05:15:51,089 creating build/lib/concord/plotting 2025-03-17T05:15:51,091 copying src/concord/plotting/pl_embedding.py -> build/lib/concord/plotting 2025-03-17T05:15:51,095 copying src/concord/plotting/pl_batch.py -> build/lib/concord/plotting 2025-03-17T05:15:51,097 copying src/concord/plotting/palettes.py -> build/lib/concord/plotting 2025-03-17T05:15:51,099 copying src/concord/plotting/__init__.py -> build/lib/concord/plotting 2025-03-17T05:15:51,101 copying src/concord/plotting/pl_general.py -> build/lib/concord/plotting 2025-03-17T05:15:51,104 copying src/concord/plotting/pl_datacoverage.py -> build/lib/concord/plotting 2025-03-17T05:15:51,106 copying src/concord/plotting/pl_graph.py -> build/lib/concord/plotting 2025-03-17T05:15:51,109 copying src/concord/plotting/pl_tda.py -> build/lib/concord/plotting 2025-03-17T05:15:51,112 copying src/concord/plotting/pl_benchmark.py -> build/lib/concord/plotting 2025-03-17T05:15:51,114 copying src/concord/plotting/pl_path.py -> build/lib/concord/plotting 2025-03-17T05:15:51,117 copying src/concord/plotting/pl_heatmap.py -> build/lib/concord/plotting 2025-03-17T05:15:51,119 copying src/concord/plotting/pl_model.py -> build/lib/concord/plotting 2025-03-17T05:15:51,122 copying src/concord/plotting/pl_geometry.py -> build/lib/concord/plotting 2025-03-17T05:15:51,125 copying src/concord/plotting/pl_enrichment.py -> build/lib/concord/plotting 2025-03-17T05:15:51,159 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-17T05:15:51,159 !! 2025-03-17T05:15:51,160 ******************************************************************************** 2025-03-17T05:15:51,161 Please avoid running ``setup.py`` directly. 2025-03-17T05:15:51,161 Instead, use pypa/build, pypa/installer or other 2025-03-17T05:15:51,161 standards-based tools. 2025-03-17T05:15:51,162 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-17T05:15:51,163 ******************************************************************************** 2025-03-17T05:15:51,164 !! 2025-03-17T05:15:51,164 self.initialize_options() 2025-03-17T05:15:51,189 installing to build/bdist.linux-armv7l/wheel 2025-03-17T05:15:51,189 running install 2025-03-17T05:15:51,213 running install_lib 2025-03-17T05:15:51,240 creating build/bdist.linux-armv7l/wheel 2025-03-17T05:15:51,242 creating build/bdist.linux-armv7l/wheel/concord 2025-03-17T05:15:51,244 copying build/lib/concord/__init__.py -> build/bdist.linux-armv7l/wheel/./concord 2025-03-17T05:15:51,246 copying build/lib/concord/ul.py -> build/bdist.linux-armv7l/wheel/./concord 2025-03-17T05:15:51,249 creating build/bdist.linux-armv7l/wheel/concord/utils 2025-03-17T05:15:51,251 copying build/lib/concord/utils/geometry.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,254 copying build/lib/concord/utils/run_dim_reduction.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,257 copying build/lib/concord/utils/coverage_estimator.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,259 copying build/lib/concord/utils/evaluator.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,261 copying build/lib/concord/utils/importance_analysis.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,263 copying build/lib/concord/utils/cell_cycle.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,266 copying build/lib/concord/utils/preprocessor.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,269 copying build/lib/concord/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,271 copying build/lib/concord/utils/io.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,273 copying build/lib/concord/utils/batch_analysis.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,275 copying build/lib/concord/utils/Hs_Mm_conversion.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,277 copying build/lib/concord/utils/run_integration_methods.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,280 copying build/lib/concord/utils/feature_selector.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,283 copying build/lib/concord/utils/path_analysis.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,286 copying build/lib/concord/utils/sparsity.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,288 copying build/lib/concord/utils/simulation.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,291 copying build/lib/concord/utils/cellxgene.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,293 copying build/lib/concord/utils/anndata_utils.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,295 copying build/lib/concord/utils/enrichment_analysis.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,297 copying build/lib/concord/utils/visCello.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,300 copying build/lib/concord/utils/tda.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,302 copying build/lib/concord/utils/doublet_utils.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,304 copying build/lib/concord/utils/other_util.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,306 copying build/lib/concord/utils/value_check.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,308 copying build/lib/concord/utils/estimate_aug_mask_prob.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,310 copying build/lib/concord/utils/timer.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,311 copying build/lib/concord/utils/benchmark.py -> build/bdist.linux-armv7l/wheel/./concord/utils 2025-03-17T05:15:51,314 copying build/lib/concord/concord.py -> build/bdist.linux-armv7l/wheel/./concord 2025-03-17T05:15:51,317 copying build/lib/concord/pl.py -> build/bdist.linux-armv7l/wheel/./concord 2025-03-17T05:15:51,319 creating build/bdist.linux-armv7l/wheel/concord/model 2025-03-17T05:15:51,320 copying build/lib/concord/model/chunkloader.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,323 copying build/lib/concord/model/build_layer.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,325 copying build/lib/concord/model/model.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,327 copying build/lib/concord/model/knn.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,329 copying build/lib/concord/model/__init__.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,331 copying build/lib/concord/model/trainer.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,334 copying build/lib/concord/model/loss.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,335 copying build/lib/concord/model/sampler.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,338 copying build/lib/concord/model/anndataset.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,340 copying build/lib/concord/model/dataloader.py -> build/bdist.linux-armv7l/wheel/./concord/model 2025-03-17T05:15:51,343 creating build/bdist.linux-armv7l/wheel/concord/plotting 2025-03-17T05:15:51,344 copying build/lib/concord/plotting/pl_embedding.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,348 copying build/lib/concord/plotting/pl_batch.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,350 copying build/lib/concord/plotting/palettes.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,352 copying build/lib/concord/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,354 copying build/lib/concord/plotting/pl_general.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,356 copying build/lib/concord/plotting/pl_datacoverage.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,357 copying build/lib/concord/plotting/pl_graph.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,360 copying build/lib/concord/plotting/pl_tda.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,362 copying build/lib/concord/plotting/pl_benchmark.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,365 copying build/lib/concord/plotting/pl_path.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,367 copying build/lib/concord/plotting/pl_heatmap.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,369 copying build/lib/concord/plotting/pl_model.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,372 copying build/lib/concord/plotting/pl_geometry.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,374 copying build/lib/concord/plotting/pl_enrichment.py -> build/bdist.linux-armv7l/wheel/./concord/plotting 2025-03-17T05:15:51,376 copying build/lib/concord/ml.py -> build/bdist.linux-armv7l/wheel/./concord 2025-03-17T05:15:51,377 running install_egg_info 2025-03-17T05:15:51,410 running egg_info 2025-03-17T05:15:51,436 writing src/concord_sc.egg-info/PKG-INFO 2025-03-17T05:15:51,442 writing dependency_links to src/concord_sc.egg-info/dependency_links.txt 2025-03-17T05:15:51,445 writing requirements to src/concord_sc.egg-info/requires.txt 2025-03-17T05:15:51,446 writing top-level names to src/concord_sc.egg-info/top_level.txt 2025-03-17T05:15:51,480 reading manifest file 'src/concord_sc.egg-info/SOURCES.txt' 2025-03-17T05:15:51,485 adding license file 'LICENSE.md' 2025-03-17T05:15:51,490 writing manifest file 'src/concord_sc.egg-info/SOURCES.txt' 2025-03-17T05:15:51,491 Copying src/concord_sc.egg-info to build/bdist.linux-armv7l/wheel/./concord_sc-0.9.2-py3.11.egg-info 2025-03-17T05:15:51,502 running install_scripts 2025-03-17T05:15:51,521 creating build/bdist.linux-armv7l/wheel/concord_sc-0.9.2.dist-info/WHEEL 2025-03-17T05:15:51,523 creating '/tmp/pip-wheel-gq3_4unl/concord_sc-0.9.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-17T05:15:51,526 adding 'concord/__init__.py' 2025-03-17T05:15:51,530 adding 'concord/concord.py' 2025-03-17T05:15:51,531 adding 'concord/ml.py' 2025-03-17T05:15:51,533 adding 'concord/pl.py' 2025-03-17T05:15:51,534 adding 'concord/ul.py' 2025-03-17T05:15:51,535 adding 'concord/model/__init__.py' 2025-03-17T05:15:51,537 adding 'concord/model/anndataset.py' 2025-03-17T05:15:51,538 adding 'concord/model/build_layer.py' 2025-03-17T05:15:51,540 adding 'concord/model/chunkloader.py' 2025-03-17T05:15:51,542 adding 'concord/model/dataloader.py' 2025-03-17T05:15:51,544 adding 'concord/model/knn.py' 2025-03-17T05:15:51,545 adding 'concord/model/loss.py' 2025-03-17T05:15:51,547 adding 'concord/model/model.py' 2025-03-17T05:15:51,549 adding 'concord/model/sampler.py' 2025-03-17T05:15:51,551 adding 'concord/model/trainer.py' 2025-03-17T05:15:51,553 adding 'concord/plotting/__init__.py' 2025-03-17T05:15:51,555 adding 'concord/plotting/palettes.py' 2025-03-17T05:15:51,556 adding 'concord/plotting/pl_batch.py' 2025-03-17T05:15:51,558 adding 'concord/plotting/pl_benchmark.py' 2025-03-17T05:15:51,559 adding 'concord/plotting/pl_datacoverage.py' 2025-03-17T05:15:51,565 adding 'concord/plotting/pl_embedding.py' 2025-03-17T05:15:51,567 adding 'concord/plotting/pl_enrichment.py' 2025-03-17T05:15:51,568 adding 'concord/plotting/pl_general.py' 2025-03-17T05:15:51,570 adding 'concord/plotting/pl_geometry.py' 2025-03-17T05:15:51,572 adding 'concord/plotting/pl_graph.py' 2025-03-17T05:15:51,575 adding 'concord/plotting/pl_heatmap.py' 2025-03-17T05:15:51,576 adding 'concord/plotting/pl_model.py' 2025-03-17T05:15:51,578 adding 'concord/plotting/pl_path.py' 2025-03-17T05:15:51,580 adding 'concord/plotting/pl_tda.py' 2025-03-17T05:15:51,583 adding 'concord/utils/Hs_Mm_conversion.py' 2025-03-17T05:15:51,585 adding 'concord/utils/__init__.py' 2025-03-17T05:15:51,587 adding 'concord/utils/anndata_utils.py' 2025-03-17T05:15:51,590 adding 'concord/utils/batch_analysis.py' 2025-03-17T05:15:51,595 adding 'concord/utils/benchmark.py' 2025-03-17T05:15:51,597 adding 'concord/utils/cell_cycle.py' 2025-03-17T05:15:51,599 adding 'concord/utils/cellxgene.py' 2025-03-17T05:15:51,601 adding 'concord/utils/coverage_estimator.py' 2025-03-17T05:15:51,602 adding 'concord/utils/doublet_utils.py' 2025-03-17T05:15:51,604 adding 'concord/utils/enrichment_analysis.py' 2025-03-17T05:15:51,606 adding 'concord/utils/estimate_aug_mask_prob.py' 2025-03-17T05:15:51,608 adding 'concord/utils/evaluator.py' 2025-03-17T05:15:51,611 adding 'concord/utils/feature_selector.py' 2025-03-17T05:15:51,614 adding 'concord/utils/geometry.py' 2025-03-17T05:15:51,616 adding 'concord/utils/importance_analysis.py' 2025-03-17T05:15:51,618 adding 'concord/utils/io.py' 2025-03-17T05:15:51,620 adding 'concord/utils/other_util.py' 2025-03-17T05:15:51,622 adding 'concord/utils/path_analysis.py' 2025-03-17T05:15:51,624 adding 'concord/utils/preprocessor.py' 2025-03-17T05:15:51,627 adding 'concord/utils/run_dim_reduction.py' 2025-03-17T05:15:51,629 adding 'concord/utils/run_integration_methods.py' 2025-03-17T05:15:51,639 adding 'concord/utils/simulation.py' 2025-03-17T05:15:51,641 adding 'concord/utils/sparsity.py' 2025-03-17T05:15:51,644 adding 'concord/utils/tda.py' 2025-03-17T05:15:51,645 adding 'concord/utils/timer.py' 2025-03-17T05:15:51,647 adding 'concord/utils/value_check.py' 2025-03-17T05:15:51,650 adding 'concord/utils/visCello.py' 2025-03-17T05:15:51,653 adding 'concord_sc-0.9.2.dist-info/LICENSE.md' 2025-03-17T05:15:51,655 adding 'concord_sc-0.9.2.dist-info/METADATA' 2025-03-17T05:15:51,656 adding 'concord_sc-0.9.2.dist-info/WHEEL' 2025-03-17T05:15:51,658 adding 'concord_sc-0.9.2.dist-info/top_level.txt' 2025-03-17T05:15:51,660 adding 'concord_sc-0.9.2.dist-info/RECORD' 2025-03-17T05:15:51,665 removing build/bdist.linux-armv7l/wheel 2025-03-17T05:15:51,797 Building wheel for concord-sc (setup.py): finished with status 'done' 2025-03-17T05:15:51,801 Created wheel for concord-sc: filename=concord_sc-0.9.2-py3-none-any.whl size=139926 sha256=2263638f4ef6f3e6df29d54592c25736b9a14216e330e882a6388719764b7cc9 2025-03-17T05:15:51,802 Stored in directory: /tmp/pip-ephem-wheel-cache-0aab_7_g/wheels/90/3c/c8/04e27c4f89d079aceb7b87da3281511de05e2abd0252c78e5f 2025-03-17T05:15:51,815 Successfully built concord-sc 2025-03-17T05:15:51,824 Removed build tracker: '/tmp/pip-build-tracker-5km5pstp'