2025-03-20T07:20:29,848 Created temporary directory: /tmp/pip-build-tracker-_640skwt
2025-03-20T07:20:29,849 Initialized build tracking at /tmp/pip-build-tracker-_640skwt
2025-03-20T07:20:29,849 Created build tracker: /tmp/pip-build-tracker-_640skwt
2025-03-20T07:20:29,850 Entered build tracker: /tmp/pip-build-tracker-_640skwt
2025-03-20T07:20:29,850 Created temporary directory: /tmp/pip-wheel-z9t2du96
2025-03-20T07:20:29,854 Created temporary directory: /tmp/pip-ephem-wheel-cache-9l_rjans
2025-03-20T07:20:29,901 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-03-20T07:20:29,904 2 location(s) to search for versions of esmpra:
2025-03-20T07:20:29,904 * https://pypi.org/simple/esmpra/
2025-03-20T07:20:29,904 * https://www.piwheels.org/simple/esmpra/
2025-03-20T07:20:29,905 Fetching project page and analyzing links: https://pypi.org/simple/esmpra/
2025-03-20T07:20:29,905 Getting page https://pypi.org/simple/esmpra/
2025-03-20T07:20:29,907 Found index url https://pypi.org/simple/
2025-03-20T07:20:30,128 Fetched page https://pypi.org/simple/esmpra/ as application/vnd.pypi.simple.v1+json
2025-03-20T07:20:30,129   Skipping link: No binaries permitted for esmpra: https://files.pythonhosted.org/packages/6b/de/9665613ece47833ad13b2671453fd09c68ed987fcfa80b2b413458e12390/esMPRA-0.1.0-py3-none-any.whl (from https://pypi.org/simple/esmpra/) (requires-python:>=3.6)
2025-03-20T07:20:30,130   Found link https://files.pythonhosted.org/packages/c2/f6/8f82d153b3acf8aff62318964bde2ae111c19128220cdaff3467d102982c/esMPRA-0.1.0.tar.gz (from https://pypi.org/simple/esmpra/) (requires-python:>=3.6), version: 0.1.0
2025-03-20T07:20:30,131 Fetching project page and analyzing links: https://www.piwheels.org/simple/esmpra/
2025-03-20T07:20:30,132 Getting page https://www.piwheels.org/simple/esmpra/
2025-03-20T07:20:30,133 Found index url https://www.piwheels.org/simple/
2025-03-20T07:20:30,301 Fetched page https://www.piwheels.org/simple/esmpra/ as text/html
2025-03-20T07:20:30,303 Skipping link: not a file: https://www.piwheels.org/simple/esmpra/
2025-03-20T07:20:30,303 Skipping link: not a file: https://pypi.org/simple/esmpra/
2025-03-20T07:20:30,322 Given no hashes to check 1 links for project 'esmpra': discarding no candidates
2025-03-20T07:20:30,324 Collecting esmpra==0.1.0
2025-03-20T07:20:30,327   Created temporary directory: /tmp/pip-unpack-kudjjnwx
2025-03-20T07:20:30,542   Downloading esMPRA-0.1.0.tar.gz (605 kB)
2025-03-20T07:20:30,821   Added esmpra==0.1.0 from https://files.pythonhosted.org/packages/c2/f6/8f82d153b3acf8aff62318964bde2ae111c19128220cdaff3467d102982c/esMPRA-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-_640skwt'
2025-03-20T07:20:30,826   Running setup.py (path:/tmp/pip-wheel-z9t2du96/esmpra_e5b22dcd8b1e48679d7967ddf7331496/setup.py) egg_info for package esmpra
2025-03-20T07:20:30,827   Created temporary directory: /tmp/pip-pip-egg-info-wvibmuho
2025-03-20T07:20:30,827   Preparing metadata (setup.py): started
2025-03-20T07:20:30,828   Running command python setup.py egg_info
2025-03-20T07:20:31,932   running egg_info
2025-03-20T07:20:31,958   creating /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info
2025-03-20T07:20:31,959   writing /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/PKG-INFO
2025-03-20T07:20:31,963   writing dependency_links to /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/dependency_links.txt
2025-03-20T07:20:31,965   writing entry points to /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/entry_points.txt
2025-03-20T07:20:31,967   writing requirements to /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/requires.txt
2025-03-20T07:20:31,968   writing top-level names to /tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/top_level.txt
2025-03-20T07:20:31,969   writing manifest file '/tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/SOURCES.txt'
2025-03-20T07:20:32,054   reading manifest file '/tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/SOURCES.txt'
2025-03-20T07:20:32,056   reading manifest template 'MANIFEST.in'
2025-03-20T07:20:32,060   writing manifest file '/tmp/pip-pip-egg-info-wvibmuho/esMPRA.egg-info/SOURCES.txt'
2025-03-20T07:20:32,171   Preparing metadata (setup.py): finished with status 'done'
2025-03-20T07:20:32,176   Source in /tmp/pip-wheel-z9t2du96/esmpra_e5b22dcd8b1e48679d7967ddf7331496 has version 0.1.0, which satisfies requirement esmpra==0.1.0 from https://files.pythonhosted.org/packages/c2/f6/8f82d153b3acf8aff62318964bde2ae111c19128220cdaff3467d102982c/esMPRA-0.1.0.tar.gz
2025-03-20T07:20:32,177   Removed esmpra==0.1.0 from https://files.pythonhosted.org/packages/c2/f6/8f82d153b3acf8aff62318964bde2ae111c19128220cdaff3467d102982c/esMPRA-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-_640skwt'
2025-03-20T07:20:32,185 Created temporary directory: /tmp/pip-unpack-m8gr8pmf
2025-03-20T07:20:32,186 Created temporary directory: /tmp/pip-unpack-6nbpl2q6
2025-03-20T07:20:32,187 Building wheels for collected packages: esmpra
2025-03-20T07:20:32,190   Created temporary directory: /tmp/pip-wheel-et1nofuy
2025-03-20T07:20:32,191   Building wheel for esmpra (setup.py): started
2025-03-20T07:20:32,192   Destination directory: /tmp/pip-wheel-et1nofuy
2025-03-20T07:20:32,193   Running command python setup.py bdist_wheel
2025-03-20T07:20:33,218   running bdist_wheel
2025-03-20T07:20:33,347   running build
2025-03-20T07:20:33,348   running build_py
2025-03-20T07:20:33,377   creating build/lib/esMPRA
2025-03-20T07:20:33,379   copying src/esMPRA/step5_compare_diff_rep.py -> build/lib/esMPRA
2025-03-20T07:20:33,381   copying src/esMPRA/step3_get_RNA_counts.py -> build/lib/esMPRA
2025-03-20T07:20:33,383   copying src/esMPRA/qc_step4.py -> build/lib/esMPRA
2025-03-20T07:20:33,386   copying src/esMPRA/step1_oligo_barcode_map.py -> build/lib/esMPRA
2025-03-20T07:20:33,389   copying src/esMPRA/qc_step3.py -> build/lib/esMPRA
2025-03-20T07:20:33,392   copying src/esMPRA/__init__.py -> build/lib/esMPRA
2025-03-20T07:20:33,393   copying src/esMPRA/qc_step1.py -> build/lib/esMPRA
2025-03-20T07:20:33,396   copying src/esMPRA/qc_step2.py -> build/lib/esMPRA
2025-03-20T07:20:33,399   copying src/esMPRA/step2_get_plasmid_counts.py -> build/lib/esMPRA
2025-03-20T07:20:33,401   copying src/esMPRA/generate_data_for_MPRAnalyse.py -> build/lib/esMPRA
2025-03-20T07:20:33,403   copying src/esMPRA/step4_get_result.py -> build/lib/esMPRA
2025-03-20T07:20:33,405   running egg_info
2025-03-20T07:20:33,432   writing src/esMPRA.egg-info/PKG-INFO
2025-03-20T07:20:33,436   writing dependency_links to src/esMPRA.egg-info/dependency_links.txt
2025-03-20T07:20:33,438   writing entry points to src/esMPRA.egg-info/entry_points.txt
2025-03-20T07:20:33,440   writing requirements to src/esMPRA.egg-info/requires.txt
2025-03-20T07:20:33,441   writing top-level names to src/esMPRA.egg-info/top_level.txt
2025-03-20T07:20:33,471   reading manifest file 'src/esMPRA.egg-info/SOURCES.txt'
2025-03-20T07:20:33,475   reading manifest template 'MANIFEST.in'
2025-03-20T07:20:33,479   writing manifest file 'src/esMPRA.egg-info/SOURCES.txt'
2025-03-20T07:20:33,481   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'esMPRA.data' is absent from the `packages` configuration.
2025-03-20T07:20:33,482   !!

2025-03-20T07:20:33,483           ********************************************************************************
2025-03-20T07:20:33,484           ############################
2025-03-20T07:20:33,484           # Package would be ignored #
2025-03-20T07:20:33,485           ############################
2025-03-20T07:20:33,485           Python recognizes 'esMPRA.data' as an importable package[^1],
2025-03-20T07:20:33,486           but it is absent from setuptools' `packages` configuration.

2025-03-20T07:20:33,487           This leads to an ambiguous overall configuration. If you want to distribute this
2025-03-20T07:20:33,489           package, please make sure that 'esMPRA.data' is explicitly added
2025-03-20T07:20:33,489           to the `packages` configuration field.

2025-03-20T07:20:33,490           Alternatively, you can also rely on setuptools' discovery methods
2025-03-20T07:20:33,491           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-03-20T07:20:33,491           instead of `find_packages(...)`/`find:`).

2025-03-20T07:20:33,493           You can read more about "package discovery" on setuptools documentation page:

2025-03-20T07:20:33,494           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-03-20T07:20:33,495           If you don't want 'esMPRA.data' to be distributed and are
2025-03-20T07:20:33,495           already explicitly excluding 'esMPRA.data' via
2025-03-20T07:20:33,495           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-03-20T07:20:33,496           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-03-20T07:20:33,497           combination with a more fine grained `package-data` configuration.

2025-03-20T07:20:33,499           You can read more about "package data files" on setuptools documentation page:

2025-03-20T07:20:33,501           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-03-20T07:20:33,502           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-03-20T07:20:33,503                 even if it does not contain any `.py` files.
2025-03-20T07:20:33,503                 On the other hand, currently there is no concept of package data
2025-03-20T07:20:33,503                 directory, all directories are treated like packages.
2025-03-20T07:20:33,504           ********************************************************************************

2025-03-20T07:20:33,505   !!
2025-03-20T07:20:33,506     check.warn(importable)
2025-03-20T07:20:33,506   creating build/lib/esMPRA/data
2025-03-20T07:20:33,507   copying src/esMPRA/data/step1_refdata.pkl -> build/lib/esMPRA/data
2025-03-20T07:20:33,507   copying src/esMPRA/data/step2_refdata.pkl -> build/lib/esMPRA/data
2025-03-20T07:20:33,508   copying src/esMPRA/data/step3_refdata.pkl -> build/lib/esMPRA/data
2025-03-20T07:20:33,535   copying src/esMPRA/data/step4_refdata.pkl -> build/lib/esMPRA/data
2025-03-20T07:20:33,564   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-03-20T07:20:33,564   !!

2025-03-20T07:20:33,566           ********************************************************************************
2025-03-20T07:20:33,566           Please avoid running ``setup.py`` directly.
2025-03-20T07:20:33,567           Instead, use pypa/build, pypa/installer or other
2025-03-20T07:20:33,568           standards-based tools.

2025-03-20T07:20:33,569           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-03-20T07:20:33,569           ********************************************************************************

2025-03-20T07:20:33,570   !!
2025-03-20T07:20:33,571     self.initialize_options()
2025-03-20T07:20:33,592   installing to build/bdist.linux-armv7l/wheel
2025-03-20T07:20:33,593   running install
2025-03-20T07:20:33,616   running install_lib
2025-03-20T07:20:33,643   creating build/bdist.linux-armv7l/wheel
2025-03-20T07:20:33,646   creating build/bdist.linux-armv7l/wheel/esMPRA
2025-03-20T07:20:33,647   copying build/lib/esMPRA/step5_compare_diff_rep.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,649   copying build/lib/esMPRA/step3_get_RNA_counts.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,652   copying build/lib/esMPRA/qc_step4.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,654   copying build/lib/esMPRA/step1_oligo_barcode_map.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,656   copying build/lib/esMPRA/qc_step3.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,659   copying build/lib/esMPRA/__init__.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,661   copying build/lib/esMPRA/qc_step1.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,663   copying build/lib/esMPRA/qc_step2.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,666   copying build/lib/esMPRA/step2_get_plasmid_counts.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,670   creating build/bdist.linux-armv7l/wheel/esMPRA/data
2025-03-20T07:20:33,671   copying build/lib/esMPRA/data/step2_refdata.pkl -> build/bdist.linux-armv7l/wheel/./esMPRA/data
2025-03-20T07:20:33,682   copying build/lib/esMPRA/data/step1_refdata.pkl -> build/bdist.linux-armv7l/wheel/./esMPRA/data
2025-03-20T07:20:33,686   copying build/lib/esMPRA/data/step4_refdata.pkl -> build/bdist.linux-armv7l/wheel/./esMPRA/data
2025-03-20T07:20:33,688   copying build/lib/esMPRA/data/step3_refdata.pkl -> build/bdist.linux-armv7l/wheel/./esMPRA/data
2025-03-20T07:20:33,724   copying build/lib/esMPRA/generate_data_for_MPRAnalyse.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,726   copying build/lib/esMPRA/step4_get_result.py -> build/bdist.linux-armv7l/wheel/./esMPRA
2025-03-20T07:20:33,728   running install_egg_info
2025-03-20T07:20:33,761   Copying src/esMPRA.egg-info to build/bdist.linux-armv7l/wheel/./esMPRA-0.1.0-py3.11.egg-info
2025-03-20T07:20:33,773   running install_scripts
2025-03-20T07:20:33,790   creating build/bdist.linux-armv7l/wheel/esMPRA-0.1.0.dist-info/WHEEL
2025-03-20T07:20:33,792   creating '/tmp/pip-wheel-et1nofuy/esMPRA-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-03-20T07:20:33,795   adding 'esMPRA/__init__.py'
2025-03-20T07:20:33,796   adding 'esMPRA/generate_data_for_MPRAnalyse.py'
2025-03-20T07:20:33,798   adding 'esMPRA/qc_step1.py'
2025-03-20T07:20:33,801   adding 'esMPRA/qc_step2.py'
2025-03-20T07:20:33,804   adding 'esMPRA/qc_step3.py'
2025-03-20T07:20:33,806   adding 'esMPRA/qc_step4.py'
2025-03-20T07:20:33,809   adding 'esMPRA/step1_oligo_barcode_map.py'
2025-03-20T07:20:33,811   adding 'esMPRA/step2_get_plasmid_counts.py'
2025-03-20T07:20:33,813   adding 'esMPRA/step3_get_RNA_counts.py'
2025-03-20T07:20:33,815   adding 'esMPRA/step4_get_result.py'
2025-03-20T07:20:33,817   adding 'esMPRA/step5_compare_diff_rep.py'
2025-03-20T07:20:33,838   adding 'esMPRA/data/step1_refdata.pkl'
2025-03-20T07:20:33,907   adding 'esMPRA/data/step2_refdata.pkl'
2025-03-20T07:20:34,291   adding 'esMPRA/data/step3_refdata.pkl'
2025-03-20T07:20:34,305   adding 'esMPRA/data/step4_refdata.pkl'
2025-03-20T07:20:34,308   adding 'esMPRA-0.1.0.dist-info/METADATA'
2025-03-20T07:20:34,310   adding 'esMPRA-0.1.0.dist-info/WHEEL'
2025-03-20T07:20:34,310   adding 'esMPRA-0.1.0.dist-info/entry_points.txt'
2025-03-20T07:20:34,311   adding 'esMPRA-0.1.0.dist-info/top_level.txt'
2025-03-20T07:20:34,312   adding 'esMPRA-0.1.0.dist-info/RECORD'
2025-03-20T07:20:34,320   removing build/bdist.linux-armv7l/wheel
2025-03-20T07:20:34,439   Building wheel for esmpra (setup.py): finished with status 'done'
2025-03-20T07:20:34,448   Created wheel for esmpra: filename=esMPRA-0.1.0-py3-none-any.whl size=641499 sha256=c2860d491564e159f1ceb792bb09f2d7caa15d90d49d8e528358f8733bcdab6a
2025-03-20T07:20:34,450   Stored in directory: /tmp/pip-ephem-wheel-cache-9l_rjans/wheels/3f/f4/24/82773f23558d96ae532920087818b70f2aed19ebcbd0b87f2c
2025-03-20T07:20:34,464 Successfully built esmpra
2025-03-20T07:20:34,485 Removed build tracker: '/tmp/pip-build-tracker-_640skwt'