2025-03-28T16:20:06,786 Created temporary directory: /tmp/pip-build-tracker-x1ke1wp9 2025-03-28T16:20:06,787 Initialized build tracking at /tmp/pip-build-tracker-x1ke1wp9 2025-03-28T16:20:06,788 Created build tracker: /tmp/pip-build-tracker-x1ke1wp9 2025-03-28T16:20:06,788 Entered build tracker: /tmp/pip-build-tracker-x1ke1wp9 2025-03-28T16:20:06,789 Created temporary directory: /tmp/pip-wheel-pfql48q2 2025-03-28T16:20:06,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-5wi3v6f0 2025-03-28T16:20:06,840 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-28T16:20:06,843 2 location(s) to search for versions of ngmaster: 2025-03-28T16:20:06,843 * https://pypi.org/simple/ngmaster/ 2025-03-28T16:20:06,843 * https://www.piwheels.org/simple/ngmaster/ 2025-03-28T16:20:06,844 Fetching project page and analyzing links: https://pypi.org/simple/ngmaster/ 2025-03-28T16:20:06,844 Getting page https://pypi.org/simple/ngmaster/ 2025-03-28T16:20:06,846 Found index url https://pypi.org/simple/ 2025-03-28T16:20:07,074 Fetched page https://pypi.org/simple/ngmaster/ as application/vnd.pypi.simple.v1+json 2025-03-28T16:20:07,077 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/4d/80/abedd4d7636b07a503d907dd81494020d6b8eecf549cc0daa0ef8301bc54/ngmaster-0.5.4-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,078 Found link https://files.pythonhosted.org/packages/a0/06/d7ff9759033f5fa0aa9946ff366b8f0e2371e0aaf51c91435793c176d385/ngmaster-0.5.4.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.4 2025-03-28T16:20:07,079 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/2c/5a/125c5b39b685db4e4b56ca2eefafe571d70cd9d035ec3434b91540211725/ngmaster-0.5.5-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,080 Found link https://files.pythonhosted.org/packages/74/37/1e13329686d0458cd138e630552dcdcb4034a66c401a6b82e09ff3dbb396/ngmaster-0.5.5.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.5 2025-03-28T16:20:07,081 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/8b/c0/c07be49d562bfa8144ebfec880a09ad9115d7a8b4f7042fa1ddb2a8a40c1/ngmaster-0.5.6-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,081 Found link https://files.pythonhosted.org/packages/4d/a1/f9a30dffe6cd29f854aadfebfe058dce1269a54e3baf08098f07054d6cdb/ngmaster-0.5.6.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.6 2025-03-28T16:20:07,082 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/a9/e4/f248d1938526656672b7b3ad14d81070d03d26192679f4700254546729a8/ngmaster-0.5.7-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,083 Found link https://files.pythonhosted.org/packages/14/fa/168a5d0d05e24f6bffdba2ec91d230eef9414a120de91406a7e5c0cc75b2/ngmaster-0.5.7.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.7 2025-03-28T16:20:07,084 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/cf/a2/2f2a4bb9cf6a4cc8e1b2b57c7221a30f87f21570d47bbb346ea3b27393c2/ngmaster-0.5.8-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,085 Found link https://files.pythonhosted.org/packages/11/f9/faef97dcce8a867a7d7b8f5460ab1fbce946459ec014cb6e2b35a179a05b/ngmaster-0.5.8.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.8 2025-03-28T16:20:07,086 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/a1/ee/d8a2ba1e07dab6ac5b6c542f4ad59257695983f52ea6048e74d0d65c4b36/ngmaster-1.0.0-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,087 Found link https://files.pythonhosted.org/packages/b2/93/1e7b3a86c0df54b2b1a3a540ccf8a149f262fe350707d4a86b5fd3206302/ngmaster-1.0.0.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 1.0.0 2025-03-28T16:20:07,088 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/ae/31/0a619af3ba6f209f4ef0dff06e3af7e6f0017879f9a0abb5728d079b223f/ngmaster-1.1.1-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,089 Found link https://files.pythonhosted.org/packages/17/9d/fd8ab3326d2c09d3d0025f2fc1fbc4bfc10113e175f5d0ff3335018d2bfb/ngmaster-1.1.1.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 1.1.1 2025-03-28T16:20:07,090 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngmaster/ 2025-03-28T16:20:07,090 Getting page https://www.piwheels.org/simple/ngmaster/ 2025-03-28T16:20:07,092 Found index url https://www.piwheels.org/simple/ 2025-03-28T16:20:07,257 Fetched page https://www.piwheels.org/simple/ngmaster/ as text/html 2025-03-28T16:20:07,260 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-1.0.0-py3-none-any.whl#sha256=0cdbc08edccde0e7f11a17408ac63514e0f335c51c63df046e35baa7f48a00f4 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,261 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.8-py3-none-any.whl#sha256=8f6de8fe159e23b279363f668f7bfd97556d81ec54fc8ce47e2a296d16635c95 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,261 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.7-py3-none-any.whl#sha256=9a5a55436aae6753255a4f0be88daf8ec991438967839dd783be2190df562a55 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,262 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.6-py3-none-any.whl#sha256=b101c7b9ea4d8d5c631796e8bbb1be23c53dfc5e29c3ec1594fb2fbe4aea6c8c (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,262 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.5-py3-none-any.whl#sha256=aa7b261ad4962de0b6035817fcba143e652a204ae4e10dd385d60f0f94d82fd4 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,263 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.4-py3-none-any.whl#sha256=fbf5e37ea56af43ac42573cf901891651b0ec114a5e9a69e306845ca57c9c077 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2025-03-28T16:20:07,264 Skipping link: not a file: https://www.piwheels.org/simple/ngmaster/ 2025-03-28T16:20:07,264 Skipping link: not a file: https://pypi.org/simple/ngmaster/ 2025-03-28T16:20:07,284 Given no hashes to check 1 links for project 'ngmaster': discarding no candidates 2025-03-28T16:20:07,286 Collecting ngmaster==1.1.1 2025-03-28T16:20:07,289 Created temporary directory: /tmp/pip-unpack-sjpuomsw 2025-03-28T16:20:07,617 Downloading ngmaster-1.1.1.tar.gz (1.8 MB) 2025-03-28T16:20:08,850 Added ngmaster==1.1.1 from https://files.pythonhosted.org/packages/17/9d/fd8ab3326d2c09d3d0025f2fc1fbc4bfc10113e175f5d0ff3335018d2bfb/ngmaster-1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-x1ke1wp9' 2025-03-28T16:20:08,853 Running setup.py (path:/tmp/pip-wheel-pfql48q2/ngmaster_e0143916101f492ca55a5ed8af4bb0e7/setup.py) egg_info for package ngmaster 2025-03-28T16:20:08,854 Created temporary directory: /tmp/pip-pip-egg-info-4l69berz 2025-03-28T16:20:08,854 Preparing metadata (setup.py): started 2025-03-28T16:20:08,856 Running command python setup.py egg_info 2025-03-28T16:20:09,413 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2025-03-28T16:20:09,414 warnings.warn(msg) 2025-03-28T16:20:09,415 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' 2025-03-28T16:20:09,415 warnings.warn(msg) 2025-03-28T16:20:09,415 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'extra_require' 2025-03-28T16:20:09,416 warnings.warn(msg) 2025-03-28T16:20:09,959 running egg_info 2025-03-28T16:20:09,987 creating /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info 2025-03-28T16:20:09,989 writing /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/PKG-INFO 2025-03-28T16:20:09,993 writing dependency_links to /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/dependency_links.txt 2025-03-28T16:20:09,994 writing entry points to /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/entry_points.txt 2025-03-28T16:20:09,996 writing requirements to /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/requires.txt 2025-03-28T16:20:09,996 writing top-level names to /tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/top_level.txt 2025-03-28T16:20:09,998 writing manifest file '/tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/SOURCES.txt' 2025-03-28T16:20:10,087 reading manifest file '/tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/SOURCES.txt' 2025-03-28T16:20:10,088 reading manifest template 'MANIFEST.in' 2025-03-28T16:20:10,094 adding license file 'LICENSE' 2025-03-28T16:20:10,098 writing manifest file '/tmp/pip-pip-egg-info-4l69berz/ngmaster.egg-info/SOURCES.txt' 2025-03-28T16:20:10,208 Preparing metadata (setup.py): finished with status 'done' 2025-03-28T16:20:10,212 Source in /tmp/pip-wheel-pfql48q2/ngmaster_e0143916101f492ca55a5ed8af4bb0e7 has version 1.1.1, which satisfies requirement ngmaster==1.1.1 from https://files.pythonhosted.org/packages/17/9d/fd8ab3326d2c09d3d0025f2fc1fbc4bfc10113e175f5d0ff3335018d2bfb/ngmaster-1.1.1.tar.gz 2025-03-28T16:20:10,213 Removed ngmaster==1.1.1 from https://files.pythonhosted.org/packages/17/9d/fd8ab3326d2c09d3d0025f2fc1fbc4bfc10113e175f5d0ff3335018d2bfb/ngmaster-1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-x1ke1wp9' 2025-03-28T16:20:10,220 Created temporary directory: /tmp/pip-unpack-de__ot3y 2025-03-28T16:20:10,221 Created temporary directory: /tmp/pip-unpack-x9h4ip34 2025-03-28T16:20:10,222 Building wheels for collected packages: ngmaster 2025-03-28T16:20:10,226 Created temporary directory: /tmp/pip-wheel-5kbzcard 2025-03-28T16:20:10,227 Building wheel for ngmaster (setup.py): started 2025-03-28T16:20:10,228 Destination directory: /tmp/pip-wheel-5kbzcard 2025-03-28T16:20:10,229 Running command python setup.py bdist_wheel 2025-03-28T16:20:10,754 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2025-03-28T16:20:10,754 warnings.warn(msg) 2025-03-28T16:20:10,755 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' 2025-03-28T16:20:10,755 warnings.warn(msg) 2025-03-28T16:20:10,756 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'extra_require' 2025-03-28T16:20:10,756 warnings.warn(msg) 2025-03-28T16:20:11,268 running bdist_wheel 2025-03-28T16:20:11,406 running build 2025-03-28T16:20:11,406 running build_py 2025-03-28T16:20:11,437 creating build/lib/ngmaster 2025-03-28T16:20:11,439 copying ngmaster/run_ngmaster.py -> build/lib/ngmaster 2025-03-28T16:20:11,442 copying ngmaster/__init__.py -> build/lib/ngmaster 2025-03-28T16:20:11,444 copying ngmaster/utils_logger.py -> build/lib/ngmaster 2025-03-28T16:20:11,446 copying ngmaster/utils_2.py -> build/lib/ngmaster 2025-03-28T16:20:11,449 copying ngmaster/run_ngmaster_2.py -> build/lib/ngmaster 2025-03-28T16:20:11,451 copying ngmaster/utils.py -> build/lib/ngmaster 2025-03-28T16:20:11,454 running egg_info 2025-03-28T16:20:11,483 writing ngmaster.egg-info/PKG-INFO 2025-03-28T16:20:11,486 writing dependency_links to ngmaster.egg-info/dependency_links.txt 2025-03-28T16:20:11,488 writing entry points to ngmaster.egg-info/entry_points.txt 2025-03-28T16:20:11,489 writing requirements to ngmaster.egg-info/requires.txt 2025-03-28T16:20:11,490 writing top-level names to ngmaster.egg-info/top_level.txt 2025-03-28T16:20:11,520 reading manifest file 'ngmaster.egg-info/SOURCES.txt' 2025-03-28T16:20:11,525 reading manifest template 'MANIFEST.in' 2025-03-28T16:20:11,528 adding license file 'LICENSE' 2025-03-28T16:20:11,532 writing manifest file 'ngmaster.egg-info/SOURCES.txt' 2025-03-28T16:20:11,535 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'ngmaster.db.blast' is absent from the `packages` configuration. 2025-03-28T16:20:11,535 !! 2025-03-28T16:20:11,536 ******************************************************************************** 2025-03-28T16:20:11,537 ############################ 2025-03-28T16:20:11,537 # Package would be ignored # 2025-03-28T16:20:11,538 ############################ 2025-03-28T16:20:11,539 Python recognizes 'ngmaster.db.blast' as an importable package[^1], 2025-03-28T16:20:11,539 but it is absent from setuptools' `packages` configuration. 2025-03-28T16:20:11,540 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T16:20:11,541 package, please make sure that 'ngmaster.db.blast' is explicitly added 2025-03-28T16:20:11,541 to the `packages` configuration field. 2025-03-28T16:20:11,542 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T16:20:11,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T16:20:11,543 instead of `find_packages(...)`/`find:`). 2025-03-28T16:20:11,544 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T16:20:11,545 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T16:20:11,546 If you don't want 'ngmaster.db.blast' to be distributed and are 2025-03-28T16:20:11,546 already explicitly excluding 'ngmaster.db.blast' via 2025-03-28T16:20:11,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T16:20:11,547 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T16:20:11,548 combination with a more fine grained `package-data` configuration. 2025-03-28T16:20:11,549 You can read more about "package data files" on setuptools documentation page: 2025-03-28T16:20:11,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T16:20:11,552 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T16:20:11,552 even if it does not contain any `.py` files. 2025-03-28T16:20:11,553 On the other hand, currently there is no concept of package data 2025-03-28T16:20:11,553 directory, all directories are treated like packages. 2025-03-28T16:20:11,554 ******************************************************************************** 2025-03-28T16:20:11,555 !! 2025-03-28T16:20:11,555 check.warn(importable) 2025-03-28T16:20:11,556 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'ngmaster.db.pubmlst.ngmast' is absent from the `packages` configuration. 2025-03-28T16:20:11,557 !! 2025-03-28T16:20:11,558 ******************************************************************************** 2025-03-28T16:20:11,559 ############################ 2025-03-28T16:20:11,559 # Package would be ignored # 2025-03-28T16:20:11,560 ############################ 2025-03-28T16:20:11,560 Python recognizes 'ngmaster.db.pubmlst.ngmast' as an importable package[^1], 2025-03-28T16:20:11,561 but it is absent from setuptools' `packages` configuration. 2025-03-28T16:20:11,562 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T16:20:11,562 package, please make sure that 'ngmaster.db.pubmlst.ngmast' is explicitly added 2025-03-28T16:20:11,563 to the `packages` configuration field. 2025-03-28T16:20:11,564 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T16:20:11,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T16:20:11,564 instead of `find_packages(...)`/`find:`). 2025-03-28T16:20:11,565 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T16:20:11,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T16:20:11,567 If you don't want 'ngmaster.db.pubmlst.ngmast' to be distributed and are 2025-03-28T16:20:11,568 already explicitly excluding 'ngmaster.db.pubmlst.ngmast' via 2025-03-28T16:20:11,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T16:20:11,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T16:20:11,569 combination with a more fine grained `package-data` configuration. 2025-03-28T16:20:11,570 You can read more about "package data files" on setuptools documentation page: 2025-03-28T16:20:11,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T16:20:11,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T16:20:11,573 even if it does not contain any `.py` files. 2025-03-28T16:20:11,573 On the other hand, currently there is no concept of package data 2025-03-28T16:20:11,574 directory, all directories are treated like packages. 2025-03-28T16:20:11,574 ******************************************************************************** 2025-03-28T16:20:11,575 !! 2025-03-28T16:20:11,576 check.warn(importable) 2025-03-28T16:20:11,576 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'ngmaster.db.pubmlst.ngstar' is absent from the `packages` configuration. 2025-03-28T16:20:11,577 !! 2025-03-28T16:20:11,578 ******************************************************************************** 2025-03-28T16:20:11,579 ############################ 2025-03-28T16:20:11,580 # Package would be ignored # 2025-03-28T16:20:11,580 ############################ 2025-03-28T16:20:11,581 Python recognizes 'ngmaster.db.pubmlst.ngstar' as an importable package[^1], 2025-03-28T16:20:11,582 but it is absent from setuptools' `packages` configuration. 2025-03-28T16:20:11,583 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T16:20:11,583 package, please make sure that 'ngmaster.db.pubmlst.ngstar' is explicitly added 2025-03-28T16:20:11,584 to the `packages` configuration field. 2025-03-28T16:20:11,585 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T16:20:11,585 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T16:20:11,586 instead of `find_packages(...)`/`find:`). 2025-03-28T16:20:11,587 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T16:20:11,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T16:20:11,589 If you don't want 'ngmaster.db.pubmlst.ngstar' to be distributed and are 2025-03-28T16:20:11,590 already explicitly excluding 'ngmaster.db.pubmlst.ngstar' via 2025-03-28T16:20:11,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T16:20:11,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T16:20:11,592 combination with a more fine grained `package-data` configuration. 2025-03-28T16:20:11,593 You can read more about "package data files" on setuptools documentation page: 2025-03-28T16:20:11,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T16:20:11,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T16:20:11,595 even if it does not contain any `.py` files. 2025-03-28T16:20:11,596 On the other hand, currently there is no concept of package data 2025-03-28T16:20:11,596 directory, all directories are treated like packages. 2025-03-28T16:20:11,597 ******************************************************************************** 2025-03-28T16:20:11,598 !! 2025-03-28T16:20:11,598 check.warn(importable) 2025-03-28T16:20:11,599 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'ngmaster.scripts' is absent from the `packages` configuration. 2025-03-28T16:20:11,599 !! 2025-03-28T16:20:11,600 ******************************************************************************** 2025-03-28T16:20:11,601 ############################ 2025-03-28T16:20:11,601 # Package would be ignored # 2025-03-28T16:20:11,602 ############################ 2025-03-28T16:20:11,602 Python recognizes 'ngmaster.scripts' as an importable package[^1], 2025-03-28T16:20:11,602 but it is absent from setuptools' `packages` configuration. 2025-03-28T16:20:11,603 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T16:20:11,604 package, please make sure that 'ngmaster.scripts' is explicitly added 2025-03-28T16:20:11,604 to the `packages` configuration field. 2025-03-28T16:20:11,606 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T16:20:11,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T16:20:11,607 instead of `find_packages(...)`/`find:`). 2025-03-28T16:20:11,608 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T16:20:11,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T16:20:11,611 If you don't want 'ngmaster.scripts' to be distributed and are 2025-03-28T16:20:11,612 already explicitly excluding 'ngmaster.scripts' via 2025-03-28T16:20:11,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T16:20:11,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T16:20:11,618 combination with a more fine grained `package-data` configuration. 2025-03-28T16:20:11,629 You can read more about "package data files" on setuptools documentation page: 2025-03-28T16:20:11,639 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T16:20:11,711 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T16:20:11,739 even if it does not contain any `.py` files. 2025-03-28T16:20:11,741 On the other hand, currently there is no concept of package data 2025-03-28T16:20:11,742 directory, all directories are treated like packages. 2025-03-28T16:20:11,743 ******************************************************************************** 2025-03-28T16:20:11,744 !! 2025-03-28T16:20:11,744 check.warn(importable) 2025-03-28T16:20:11,745 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'ngmaster.test' is absent from the `packages` configuration. 2025-03-28T16:20:11,746 !! 2025-03-28T16:20:11,747 ******************************************************************************** 2025-03-28T16:20:11,747 ############################ 2025-03-28T16:20:11,748 # Package would be ignored # 2025-03-28T16:20:11,749 ############################ 2025-03-28T16:20:11,756 Python recognizes 'ngmaster.test' as an importable package[^1], 2025-03-28T16:20:11,758 but it is absent from setuptools' `packages` configuration. 2025-03-28T16:20:11,762 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T16:20:11,763 package, please make sure that 'ngmaster.test' is explicitly added 2025-03-28T16:20:11,764 to the `packages` configuration field. 2025-03-28T16:20:11,766 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T16:20:11,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T16:20:11,769 instead of `find_packages(...)`/`find:`). 2025-03-28T16:20:11,770 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T16:20:11,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T16:20:11,771 If you don't want 'ngmaster.test' to be distributed and are 2025-03-28T16:20:11,772 already explicitly excluding 'ngmaster.test' via 2025-03-28T16:20:11,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T16:20:11,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T16:20:11,774 combination with a more fine grained `package-data` configuration. 2025-03-28T16:20:11,777 You can read more about "package data files" on setuptools documentation page: 2025-03-28T16:20:11,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T16:20:11,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T16:20:11,780 even if it does not contain any `.py` files. 2025-03-28T16:20:11,780 On the other hand, currently there is no concept of package data 2025-03-28T16:20:11,781 directory, all directories are treated like packages. 2025-03-28T16:20:11,781 ******************************************************************************** 2025-03-28T16:20:11,782 !! 2025-03-28T16:20:11,788 check.warn(importable) 2025-03-28T16:20:11,789 creating build/lib/ngmaster/db/blast 2025-03-28T16:20:11,790 copying ngmaster/db/blast/mlst.fa -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,792 copying ngmaster/db/blast/mlst.fa.ndb -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,797 copying ngmaster/db/blast/mlst.fa.nhd -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,800 copying ngmaster/db/blast/mlst.fa.nhi -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,801 copying ngmaster/db/blast/mlst.fa.nhr -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,803 copying ngmaster/db/blast/mlst.fa.nin -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,810 copying ngmaster/db/blast/mlst.fa.njs -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,812 copying ngmaster/db/blast/mlst.fa.nog -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,817 copying ngmaster/db/blast/mlst.fa.nos -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,830 copying ngmaster/db/blast/mlst.fa.not -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,839 copying ngmaster/db/blast/mlst.fa.nsq -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,899 copying ngmaster/db/blast/mlst.fa.ntf -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,902 copying ngmaster/db/blast/mlst.fa.nto -> build/lib/ngmaster/db/blast 2025-03-28T16:20:11,906 creating build/lib/ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:11,908 copying ngmaster/db/pubmlst/ngmast/ngmast.txt -> build/lib/ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:11,916 copying ngmaster/db/pubmlst/ngmast/porB.tfa -> build/lib/ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,003 copying ngmaster/db/pubmlst/ngmast/tbpB.tfa -> build/lib/ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,024 creating build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,025 copying ngmaster/db/pubmlst/ngstar/23S.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,028 copying ngmaster/db/pubmlst/ngstar/allele_comments.tsv -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,032 copying ngmaster/db/pubmlst/ngstar/gyrA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,035 copying ngmaster/db/pubmlst/ngstar/mtrR.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,041 copying ngmaster/db/pubmlst/ngstar/ngstar.txt -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,045 copying ngmaster/db/pubmlst/ngstar/parC.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,048 copying ngmaster/db/pubmlst/ngstar/penA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,157 copying ngmaster/db/pubmlst/ngstar/ponA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,160 copying ngmaster/db/pubmlst/ngstar/porB.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,163 creating build/lib/ngmaster/scripts 2025-03-28T16:20:12,165 copying ngmaster/scripts/mlst-make_blast_db -> build/lib/ngmaster/scripts 2025-03-28T16:20:12,168 creating build/lib/ngmaster/test 2025-03-28T16:20:12,170 copying ngmaster/test/COPYING -> build/lib/ngmaster/test 2025-03-28T16:20:12,174 copying ngmaster/test/COPYING.LESSER -> build/lib/ngmaster/test 2025-03-28T16:20:12,178 copying ngmaster/test/assert.sh -> build/lib/ngmaster/test 2025-03-28T16:20:12,182 copying ngmaster/test/noseq.fa -> build/lib/ngmaster/test 2025-03-28T16:20:12,184 copying ngmaster/test/null.fa -> build/lib/ngmaster/test 2025-03-28T16:20:12,186 copying ngmaster/test/test.fa -> build/lib/ngmaster/test 2025-03-28T16:20:12,220 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-28T16:20:12,221 !! 2025-03-28T16:20:12,222 ******************************************************************************** 2025-03-28T16:20:12,223 Please avoid running ``setup.py`` directly. 2025-03-28T16:20:12,223 Instead, use pypa/build, pypa/installer or other 2025-03-28T16:20:12,224 standards-based tools. 2025-03-28T16:20:12,225 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-28T16:20:12,225 ******************************************************************************** 2025-03-28T16:20:12,227 !! 2025-03-28T16:20:12,227 self.initialize_options() 2025-03-28T16:20:12,250 installing to build/bdist.linux-armv7l/wheel 2025-03-28T16:20:12,250 running install 2025-03-28T16:20:12,274 running install_lib 2025-03-28T16:20:12,303 creating build/bdist.linux-armv7l/wheel 2025-03-28T16:20:12,305 creating build/bdist.linux-armv7l/wheel/ngmaster 2025-03-28T16:20:12,306 copying build/lib/ngmaster/run_ngmaster.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,309 copying build/lib/ngmaster/__init__.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,311 creating build/bdist.linux-armv7l/wheel/ngmaster/scripts 2025-03-28T16:20:12,312 copying build/lib/ngmaster/scripts/mlst-make_blast_db -> build/bdist.linux-armv7l/wheel/./ngmaster/scripts 2025-03-28T16:20:12,315 copying build/lib/ngmaster/utils_logger.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,317 copying build/lib/ngmaster/utils_2.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,320 copying build/lib/ngmaster/run_ngmaster_2.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,323 creating build/bdist.linux-armv7l/wheel/ngmaster/test 2025-03-28T16:20:12,324 copying build/lib/ngmaster/test/assert.sh -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,327 copying build/lib/ngmaster/test/COPYING.LESSER -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,329 copying build/lib/ngmaster/test/COPYING -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,331 copying build/lib/ngmaster/test/noseq.fa -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,333 copying build/lib/ngmaster/test/null.fa -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,335 copying build/lib/ngmaster/test/test.fa -> build/bdist.linux-armv7l/wheel/./ngmaster/test 2025-03-28T16:20:12,337 copying build/lib/ngmaster/utils.py -> build/bdist.linux-armv7l/wheel/./ngmaster 2025-03-28T16:20:12,340 creating build/bdist.linux-armv7l/wheel/ngmaster/db 2025-03-28T16:20:12,342 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst 2025-03-28T16:20:12,343 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,345 copying build/lib/ngmaster/db/pubmlst/ngstar/ponA.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,347 copying build/lib/ngmaster/db/pubmlst/ngstar/gyrA.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,349 copying build/lib/ngmaster/db/pubmlst/ngstar/ngstar.txt -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,352 copying build/lib/ngmaster/db/pubmlst/ngstar/parC.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,356 copying build/lib/ngmaster/db/pubmlst/ngstar/23S.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,359 copying build/lib/ngmaster/db/pubmlst/ngstar/allele_comments.tsv -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,362 copying build/lib/ngmaster/db/pubmlst/ngstar/porB.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,364 copying build/lib/ngmaster/db/pubmlst/ngstar/mtrR.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,379 copying build/lib/ngmaster/db/pubmlst/ngstar/penA.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngstar 2025-03-28T16:20:12,469 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,471 copying build/lib/ngmaster/db/pubmlst/ngmast/tbpB.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,491 copying build/lib/ngmaster/db/pubmlst/ngmast/porB.tfa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,596 copying build/lib/ngmaster/db/pubmlst/ngmast/ngmast.txt -> build/bdist.linux-armv7l/wheel/./ngmaster/db/pubmlst/ngmast 2025-03-28T16:20:12,604 creating build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2025-03-28T16:20:12,605 copying build/lib/ngmaster/db/blast/mlst.fa.not -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,611 copying build/lib/ngmaster/db/blast/mlst.fa.ntf -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,614 copying build/lib/ngmaster/db/blast/mlst.fa.nhd -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,622 copying build/lib/ngmaster/db/blast/mlst.fa.nos -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,631 copying build/lib/ngmaster/db/blast/mlst.fa.ndb -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,651 copying build/lib/ngmaster/db/blast/mlst.fa.nhr -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,668 copying build/lib/ngmaster/db/blast/mlst.fa.nto -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,671 copying build/lib/ngmaster/db/blast/mlst.fa.nhi -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,674 copying build/lib/ngmaster/db/blast/mlst.fa.nin -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,679 copying build/lib/ngmaster/db/blast/mlst.fa.nog -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,683 copying build/lib/ngmaster/db/blast/mlst.fa.njs -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,685 copying build/lib/ngmaster/db/blast/mlst.fa.nsq -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,748 copying build/lib/ngmaster/db/blast/mlst.fa -> build/bdist.linux-armv7l/wheel/./ngmaster/db/blast 2025-03-28T16:20:12,935 running install_egg_info 2025-03-28T16:20:12,970 Copying ngmaster.egg-info to build/bdist.linux-armv7l/wheel/./ngmaster-1.1.1-py3.11.egg-info 2025-03-28T16:20:12,983 running install_scripts 2025-03-28T16:20:13,003 creating build/bdist.linux-armv7l/wheel/ngmaster-1.1.1.dist-info/WHEEL 2025-03-28T16:20:13,005 creating '/tmp/pip-wheel-5kbzcard/ngmaster-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-28T16:20:13,008 adding 'ngmaster/__init__.py' 2025-03-28T16:20:13,010 adding 'ngmaster/run_ngmaster.py' 2025-03-28T16:20:13,012 adding 'ngmaster/run_ngmaster_2.py' 2025-03-28T16:20:13,015 adding 'ngmaster/utils.py' 2025-03-28T16:20:13,018 adding 'ngmaster/utils_2.py' 2025-03-28T16:20:13,021 adding 'ngmaster/utils_logger.py' 2025-03-28T16:20:13,820 adding 'ngmaster/db/blast/mlst.fa' 2025-03-28T16:20:13,970 adding 'ngmaster/db/blast/mlst.fa.ndb' 2025-03-28T16:20:14,073 adding 'ngmaster/db/blast/mlst.fa.nhd' 2025-03-28T16:20:14,077 adding 'ngmaster/db/blast/mlst.fa.nhi' 2025-03-28T16:20:14,106 adding 'ngmaster/db/blast/mlst.fa.nhr' 2025-03-28T16:20:14,148 adding 'ngmaster/db/blast/mlst.fa.nin' 2025-03-28T16:20:14,151 adding 'ngmaster/db/blast/mlst.fa.njs' 2025-03-28T16:20:14,154 adding 'ngmaster/db/blast/mlst.fa.nog' 2025-03-28T16:20:14,194 adding 'ngmaster/db/blast/mlst.fa.nos' 2025-03-28T16:20:14,227 adding 'ngmaster/db/blast/mlst.fa.not' 2025-03-28T16:20:14,404 adding 'ngmaster/db/blast/mlst.fa.nsq' 2025-03-28T16:20:14,425 adding 'ngmaster/db/blast/mlst.fa.ntf' 2025-03-28T16:20:14,453 adding 'ngmaster/db/blast/mlst.fa.nto' 2025-03-28T16:20:14,561 adding 'ngmaster/db/pubmlst/ngmast/ngmast.txt' 2025-03-28T16:20:14,900 adding 'ngmaster/db/pubmlst/ngmast/porB.tfa' 2025-03-28T16:20:15,021 adding 'ngmaster/db/pubmlst/ngmast/tbpB.tfa' 2025-03-28T16:20:15,032 adding 'ngmaster/db/pubmlst/ngstar/23S.tfa' 2025-03-28T16:20:15,039 adding 'ngmaster/db/pubmlst/ngstar/allele_comments.tsv' 2025-03-28T16:20:15,042 adding 'ngmaster/db/pubmlst/ngstar/gyrA.tfa' 2025-03-28T16:20:15,051 adding 'ngmaster/db/pubmlst/ngstar/mtrR.tfa' 2025-03-28T16:20:15,066 adding 'ngmaster/db/pubmlst/ngstar/ngstar.txt' 2025-03-28T16:20:15,069 adding 'ngmaster/db/pubmlst/ngstar/parC.tfa' 2025-03-28T16:20:15,426 adding 'ngmaster/db/pubmlst/ngstar/penA.tfa' 2025-03-28T16:20:15,457 adding 'ngmaster/db/pubmlst/ngstar/ponA.tfa' 2025-03-28T16:20:15,459 adding 'ngmaster/db/pubmlst/ngstar/porB.tfa' 2025-03-28T16:20:15,461 adding 'ngmaster/scripts/mlst-make_blast_db' 2025-03-28T16:20:15,468 adding 'ngmaster/test/COPYING' 2025-03-28T16:20:15,470 adding 'ngmaster/test/COPYING.LESSER' 2025-03-28T16:20:15,472 adding 'ngmaster/test/assert.sh' 2025-03-28T16:20:15,474 adding 'ngmaster/test/noseq.fa' 2025-03-28T16:20:15,475 adding 'ngmaster/test/null.fa' 2025-03-28T16:20:15,477 adding 'ngmaster/test/test.fa' 2025-03-28T16:20:15,485 adding 'ngmaster-1.1.1.dist-info/LICENSE' 2025-03-28T16:20:15,487 adding 'ngmaster-1.1.1.dist-info/METADATA' 2025-03-28T16:20:15,488 adding 'ngmaster-1.1.1.dist-info/WHEEL' 2025-03-28T16:20:15,489 adding 'ngmaster-1.1.1.dist-info/entry_points.txt' 2025-03-28T16:20:15,491 adding 'ngmaster-1.1.1.dist-info/top_level.txt' 2025-03-28T16:20:15,492 adding 'ngmaster-1.1.1.dist-info/RECORD' 2025-03-28T16:20:15,516 removing build/bdist.linux-armv7l/wheel 2025-03-28T16:20:15,655 Building wheel for ngmaster (setup.py): finished with status 'done' 2025-03-28T16:20:15,679 Created wheel for ngmaster: filename=ngmaster-1.1.1-py3-none-any.whl size=2152098 sha256=9bf3d9b196fe76380a101fdc4dc0032ec767c591eed16133dedd578444e071fa 2025-03-28T16:20:15,681 Stored in directory: /tmp/pip-ephem-wheel-cache-5wi3v6f0/wheels/7e/f4/34/44bc04d94d59fdd09584e60ad9a0e09bde01143fdecf892a51 2025-03-28T16:20:15,695 Successfully built ngmaster 2025-03-28T16:20:15,749 Removed build tracker: '/tmp/pip-build-tracker-x1ke1wp9'