2025-03-28T17:47:21,259 Created temporary directory: /tmp/pip-build-tracker-vha7gy9v 2025-03-28T17:47:21,261 Initialized build tracking at /tmp/pip-build-tracker-vha7gy9v 2025-03-28T17:47:21,261 Created build tracker: /tmp/pip-build-tracker-vha7gy9v 2025-03-28T17:47:21,262 Entered build tracker: /tmp/pip-build-tracker-vha7gy9v 2025-03-28T17:47:21,262 Created temporary directory: /tmp/pip-wheel-v80zx3yr 2025-03-28T17:47:21,266 Created temporary directory: /tmp/pip-ephem-wheel-cache-e2npm5vy 2025-03-28T17:47:21,313 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-28T17:47:21,316 2 location(s) to search for versions of pub-worm: 2025-03-28T17:47:21,316 * https://pypi.org/simple/pub-worm/ 2025-03-28T17:47:21,316 * https://www.piwheels.org/simple/pub-worm/ 2025-03-28T17:47:21,317 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2025-03-28T17:47:21,317 Getting page https://pypi.org/simple/pub-worm/ 2025-03-28T17:47:21,319 Found index url https://pypi.org/simple/ 2025-03-28T17:47:21,609 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2025-03-28T17:47:21,615 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2025-03-28T17:47:21,617 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2025-03-28T17:47:21,619 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2025-03-28T17:47:21,621 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2025-03-28T17:47:21,622 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2025-03-28T17:47:21,624 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2025-03-28T17:47:21,625 Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6 2025-03-28T17:47:21,627 Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7 2025-03-28T17:47:21,628 Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8 2025-03-28T17:47:21,630 Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9 2025-03-28T17:47:21,631 Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0 2025-03-28T17:47:21,633 Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1 2025-03-28T17:47:21,635 Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2 2025-03-28T17:47:21,637 Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3 2025-03-28T17:47:21,639 Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4 2025-03-28T17:47:21,643 Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5 2025-03-28T17:47:21,645 Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6 2025-03-28T17:47:21,647 Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7 2025-03-28T17:47:21,649 Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8 2025-03-28T17:47:21,650 Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9 2025-03-28T17:47:21,651 Found link https://files.pythonhosted.org/packages/6a/ca/c5f05833b54c4ddb2b8d70e1c3e9631b195d28c7dc92cfbbd22d539d9f0e/pub_worm-0.3.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.0 2025-03-28T17:47:21,652 Found link https://files.pythonhosted.org/packages/85/d9/83a18281c7792db68fb6f9af515e5a50b5235c2d9816586d522060be97a7/pub_worm-0.3.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.1 2025-03-28T17:47:21,653 Found link https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.2 2025-03-28T17:47:21,655 Found link https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.3 2025-03-28T17:47:21,656 Found link https://files.pythonhosted.org/packages/4e/3c/d7b15b0ca8d9ef436dd08e08a40d7b1e039c3a9e786a5e9dfa8101d02dd7/pub_worm-0.3.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.4 2025-03-28T17:47:21,658 Found link https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.5 2025-03-28T17:47:21,660 Found link https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.6 2025-03-28T17:47:21,661 Found link https://files.pythonhosted.org/packages/6f/48/015e25d3a60e7e8234cb2c2edd8b45d742fcd70992e06041d71c543b7200/pub_worm-0.3.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.7 2025-03-28T17:47:21,663 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2025-03-28T17:47:21,665 Getting page https://www.piwheels.org/simple/pub-worm/ 2025-03-28T17:47:21,667 Found index url https://www.piwheels.org/simple/ 2025-03-28T17:47:21,867 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2025-03-28T17:47:21,879 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.6-py3-none-any.whl#sha256=0a013fec740c139222c2c023f545a7331a37ff1dc993e51f7eaa9dd46e2a0157 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,879 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.5-py3-none-any.whl#sha256=bad9dfb714fc15468d1ace297ca326dfdba5e55d1179672948eadd15ac39cc61 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,880 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.4-py3-none-any.whl#sha256=a3e5dd6c0f95799f1970ecd5fb6d76d08bb48ebd70bfce270c908e998d4310c9 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,881 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.3-py3-none-any.whl#sha256=da0d3ca0a782da9c6b12ec10ee6368664cb5c3c4fb652d55ac5ea0de063f95c0 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,882 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.2-py3-none-any.whl#sha256=8eb0af1a82d51754cf91c35469d2c0e3a47cee05f6570bd5c1fa918b9b457830 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,883 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.1-py3-none-any.whl#sha256=99d9dcd7ed7ebda453e569930ae75ceab3b9c7c8eeee77028acdd9c83809f0f3 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,883 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.0-py3-none-any.whl#sha256=25de0e60cf04e1f2361dafa06cd0ccc77faf62f68e246eb8e83301e354d9150a (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,884 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.9-py3-none-any.whl#sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,885 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,886 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,886 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,887 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,888 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,889 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,889 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,890 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,891 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,891 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,892 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,893 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,894 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,894 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,895 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,895 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,896 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,897 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,897 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2025-03-28T17:47:21,898 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2025-03-28T17:47:21,899 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2025-03-28T17:47:21,931 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2025-03-28T17:47:21,933 Collecting pub-worm==0.3.7 2025-03-28T17:47:21,935 Created temporary directory: /tmp/pip-unpack-5dgnv2hu 2025-03-28T17:47:22,078 Downloading pub_worm-0.3.7.tar.gz (397 kB) 2025-03-28T17:47:22,288 Added pub-worm==0.3.7 from https://files.pythonhosted.org/packages/6f/48/015e25d3a60e7e8234cb2c2edd8b45d742fcd70992e06041d71c543b7200/pub_worm-0.3.7.tar.gz to build tracker '/tmp/pip-build-tracker-vha7gy9v' 2025-03-28T17:47:22,290 Running setup.py (path:/tmp/pip-wheel-v80zx3yr/pub-worm_9601d50992e14dc094ea3a7aed650a8b/setup.py) egg_info for package pub-worm 2025-03-28T17:47:22,291 Created temporary directory: /tmp/pip-pip-egg-info-mp805o17 2025-03-28T17:47:22,292 Preparing metadata (setup.py): started 2025-03-28T17:47:22,293 Running command python setup.py egg_info 2025-03-28T17:47:23,386 running egg_info 2025-03-28T17:47:23,413 creating /tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info 2025-03-28T17:47:23,414 writing /tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/PKG-INFO 2025-03-28T17:47:23,418 writing dependency_links to /tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/dependency_links.txt 2025-03-28T17:47:23,420 writing requirements to /tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/requires.txt 2025-03-28T17:47:23,421 writing top-level names to /tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/top_level.txt 2025-03-28T17:47:23,422 writing manifest file '/tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/SOURCES.txt' 2025-03-28T17:47:23,519 reading manifest file '/tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/SOURCES.txt' 2025-03-28T17:47:23,520 reading manifest template 'MANIFEST.in' 2025-03-28T17:47:23,522 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json' 2025-03-28T17:47:23,522 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json' 2025-03-28T17:47:23,523 warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json' 2025-03-28T17:47:23,526 writing manifest file '/tmp/pip-pip-egg-info-mp805o17/pub_worm.egg-info/SOURCES.txt' 2025-03-28T17:47:23,636 Preparing metadata (setup.py): finished with status 'done' 2025-03-28T17:47:23,640 Source in /tmp/pip-wheel-v80zx3yr/pub-worm_9601d50992e14dc094ea3a7aed650a8b has version 0.3.7, which satisfies requirement pub-worm==0.3.7 from https://files.pythonhosted.org/packages/6f/48/015e25d3a60e7e8234cb2c2edd8b45d742fcd70992e06041d71c543b7200/pub_worm-0.3.7.tar.gz 2025-03-28T17:47:23,641 Removed pub-worm==0.3.7 from https://files.pythonhosted.org/packages/6f/48/015e25d3a60e7e8234cb2c2edd8b45d742fcd70992e06041d71c543b7200/pub_worm-0.3.7.tar.gz from build tracker '/tmp/pip-build-tracker-vha7gy9v' 2025-03-28T17:47:23,646 Created temporary directory: /tmp/pip-unpack-00idjb6k 2025-03-28T17:47:23,647 Created temporary directory: /tmp/pip-unpack-rmdjlngm 2025-03-28T17:47:23,647 Building wheels for collected packages: pub-worm 2025-03-28T17:47:23,651 Created temporary directory: /tmp/pip-wheel-nkfaq15q 2025-03-28T17:47:23,652 Building wheel for pub-worm (setup.py): started 2025-03-28T17:47:23,653 Destination directory: /tmp/pip-wheel-nkfaq15q 2025-03-28T17:47:23,653 Running command python setup.py bdist_wheel 2025-03-28T17:47:24,680 running bdist_wheel 2025-03-28T17:47:24,823 running build 2025-03-28T17:47:24,823 running build_py 2025-03-28T17:47:24,854 creating build/lib/pub_worm 2025-03-28T17:47:24,856 copying pub_worm/__init__.py -> build/lib/pub_worm 2025-03-28T17:47:24,858 creating build/lib/tests 2025-03-28T17:47:24,859 copying tests/__init__.py -> build/lib/tests 2025-03-28T17:47:24,862 creating build/lib/pub_worm/biorxiv 2025-03-28T17:47:24,863 copying pub_worm/biorxiv/biorxiv_api.py -> build/lib/pub_worm/biorxiv 2025-03-28T17:47:24,865 copying pub_worm/biorxiv/__init__.py -> build/lib/pub_worm/biorxiv 2025-03-28T17:47:24,867 creating build/lib/pub_worm/orcid 2025-03-28T17:47:24,869 copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid 2025-03-28T17:47:24,871 copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid 2025-03-28T17:47:24,873 creating build/lib/pub_worm/ensembl 2025-03-28T17:47:24,874 copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl 2025-03-28T17:47:24,876 copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl 2025-03-28T17:47:24,879 creating build/lib/pub_worm/impact_factor 2025-03-28T17:47:24,880 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2025-03-28T17:47:24,882 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2025-03-28T17:47:24,884 creating build/lib/pub_worm/ncbi 2025-03-28T17:47:24,886 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2025-03-28T17:47:24,888 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2025-03-28T17:47:24,891 creating build/lib/pub_worm/wormbase 2025-03-28T17:47:24,892 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2025-03-28T17:47:24,894 copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase 2025-03-28T17:47:24,897 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2025-03-28T17:47:24,899 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2025-03-28T17:47:24,901 creating build/lib/tests/orcid 2025-03-28T17:47:24,902 copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid 2025-03-28T17:47:24,904 copying tests/orcid/__init__.py -> build/lib/tests/orcid 2025-03-28T17:47:24,906 creating build/lib/tests/impact_factor 2025-03-28T17:47:24,907 copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor 2025-03-28T17:47:24,909 copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor 2025-03-28T17:47:24,911 creating build/lib/tests/ncbi 2025-03-28T17:47:24,912 copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi 2025-03-28T17:47:24,914 copying tests/ncbi/__init__.py -> build/lib/tests/ncbi 2025-03-28T17:47:24,916 creating build/lib/tests/wormbase 2025-03-28T17:47:24,917 copying tests/wormbase/__init__.py -> build/lib/tests/wormbase 2025-03-28T17:47:24,919 copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase 2025-03-28T17:47:24,921 running egg_info 2025-03-28T17:47:24,948 writing pub_worm.egg-info/PKG-INFO 2025-03-28T17:47:24,951 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2025-03-28T17:47:24,952 writing requirements to pub_worm.egg-info/requires.txt 2025-03-28T17:47:24,953 writing top-level names to pub_worm.egg-info/top_level.txt 2025-03-28T17:47:24,991 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2025-03-28T17:47:24,995 reading manifest template 'MANIFEST.in' 2025-03-28T17:47:24,996 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json' 2025-03-28T17:47:24,997 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json' 2025-03-28T17:47:24,997 warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json' 2025-03-28T17:47:25,001 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2025-03-28T17:47:25,003 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2025-03-28T17:47:25,003 !! 2025-03-28T17:47:25,005 ******************************************************************************** 2025-03-28T17:47:25,005 ############################ 2025-03-28T17:47:25,006 # Package would be ignored # 2025-03-28T17:47:25,006 ############################ 2025-03-28T17:47:25,007 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2025-03-28T17:47:25,007 but it is absent from setuptools' `packages` configuration. 2025-03-28T17:47:25,008 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T17:47:25,009 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2025-03-28T17:47:25,009 to the `packages` configuration field. 2025-03-28T17:47:25,011 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T17:47:25,011 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T17:47:25,012 instead of `find_packages(...)`/`find:`). 2025-03-28T17:47:25,013 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T17:47:25,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T17:47:25,015 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2025-03-28T17:47:25,016 already explicitly excluding 'pub_worm.impact_factor.data' via 2025-03-28T17:47:25,017 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T17:47:25,017 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T17:47:25,018 combination with a more fine grained `package-data` configuration. 2025-03-28T17:47:25,019 You can read more about "package data files" on setuptools documentation page: 2025-03-28T17:47:25,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T17:47:25,027 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T17:47:25,027 even if it does not contain any `.py` files. 2025-03-28T17:47:25,028 On the other hand, currently there is no concept of package data 2025-03-28T17:47:25,028 directory, all directories are treated like packages. 2025-03-28T17:47:25,029 ******************************************************************************** 2025-03-28T17:47:25,030 !! 2025-03-28T17:47:25,031 check.warn(importable) 2025-03-28T17:47:25,031 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2025-03-28T17:47:25,032 !! 2025-03-28T17:47:25,033 ******************************************************************************** 2025-03-28T17:47:25,034 ############################ 2025-03-28T17:47:25,034 # Package would be ignored # 2025-03-28T17:47:25,035 ############################ 2025-03-28T17:47:25,036 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2025-03-28T17:47:25,038 but it is absent from setuptools' `packages` configuration. 2025-03-28T17:47:25,040 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T17:47:25,041 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2025-03-28T17:47:25,041 to the `packages` configuration field. 2025-03-28T17:47:25,042 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T17:47:25,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T17:47:25,043 instead of `find_packages(...)`/`find:`). 2025-03-28T17:47:25,044 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T17:47:25,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T17:47:25,046 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2025-03-28T17:47:25,047 already explicitly excluding 'pub_worm.wormbase.data' via 2025-03-28T17:47:25,047 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T17:47:25,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T17:47:25,049 combination with a more fine grained `package-data` configuration. 2025-03-28T17:47:25,050 You can read more about "package data files" on setuptools documentation page: 2025-03-28T17:47:25,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T17:47:25,052 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T17:47:25,053 even if it does not contain any `.py` files. 2025-03-28T17:47:25,053 On the other hand, currently there is no concept of package data 2025-03-28T17:47:25,054 directory, all directories are treated like packages. 2025-03-28T17:47:25,054 ******************************************************************************** 2025-03-28T17:47:25,056 !! 2025-03-28T17:47:25,056 check.warn(importable) 2025-03-28T17:47:25,057 creating build/lib/pub_worm/impact_factor/data 2025-03-28T17:47:25,057 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2025-03-28T17:47:25,058 creating build/lib/pub_worm/wormbase/data 2025-03-28T17:47:25,059 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2025-03-28T17:47:25,059 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2025-03-28T17:47:25,060 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2025-03-28T17:47:25,083 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-28T17:47:25,084 !! 2025-03-28T17:47:25,085 ******************************************************************************** 2025-03-28T17:47:25,085 Please avoid running ``setup.py`` directly. 2025-03-28T17:47:25,086 Instead, use pypa/build, pypa/installer or other 2025-03-28T17:47:25,086 standards-based tools. 2025-03-28T17:47:25,087 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-28T17:47:25,088 ******************************************************************************** 2025-03-28T17:47:25,088 !! 2025-03-28T17:47:25,089 self.initialize_options() 2025-03-28T17:47:25,111 installing to build/bdist.linux-armv7l/wheel 2025-03-28T17:47:25,111 running install 2025-03-28T17:47:25,134 running install_lib 2025-03-28T17:47:25,186 creating build/bdist.linux-armv7l/wheel 2025-03-28T17:47:25,201 creating build/bdist.linux-armv7l/wheel/pub_worm 2025-03-28T17:47:25,213 creating build/bdist.linux-armv7l/wheel/pub_worm/biorxiv 2025-03-28T17:47:25,222 copying build/lib/pub_worm/biorxiv/biorxiv_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv 2025-03-28T17:47:25,238 copying build/lib/pub_worm/biorxiv/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv 2025-03-28T17:47:25,254 creating build/bdist.linux-armv7l/wheel/pub_worm/orcid 2025-03-28T17:47:25,260 copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid 2025-03-28T17:47:25,279 copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid 2025-03-28T17:47:25,293 creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl 2025-03-28T17:47:25,296 copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl 2025-03-28T17:47:25,299 copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl 2025-03-28T17:47:25,301 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2025-03-28T17:47:25,302 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor 2025-03-28T17:47:25,305 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2025-03-28T17:47:25,306 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data 2025-03-28T17:47:25,338 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor 2025-03-28T17:47:25,341 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2025-03-28T17:47:25,342 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi 2025-03-28T17:47:25,345 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi 2025-03-28T17:47:25,346 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm 2025-03-28T17:47:25,348 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2025-03-28T17:47:25,350 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2025-03-28T17:47:25,351 copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2025-03-28T17:47:25,354 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2025-03-28T17:47:25,356 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2025-03-28T17:47:25,357 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2025-03-28T17:47:25,360 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2025-03-28T17:47:25,361 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2025-03-28T17:47:25,363 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2025-03-28T17:47:25,365 creating build/bdist.linux-armv7l/wheel/tests 2025-03-28T17:47:25,367 creating build/bdist.linux-armv7l/wheel/tests/orcid 2025-03-28T17:47:25,368 copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid 2025-03-28T17:47:25,370 copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid 2025-03-28T17:47:25,371 creating build/bdist.linux-armv7l/wheel/tests/impact_factor 2025-03-28T17:47:25,373 copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor 2025-03-28T17:47:25,374 copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor 2025-03-28T17:47:25,376 creating build/bdist.linux-armv7l/wheel/tests/ncbi 2025-03-28T17:47:25,377 copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi 2025-03-28T17:47:25,380 copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi 2025-03-28T17:47:25,381 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-03-28T17:47:25,383 creating build/bdist.linux-armv7l/wheel/tests/wormbase 2025-03-28T17:47:25,384 copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase 2025-03-28T17:47:25,386 copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase 2025-03-28T17:47:25,387 running install_egg_info 2025-03-28T17:47:25,421 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.3.7-py3.11.egg-info 2025-03-28T17:47:25,432 running install_scripts 2025-03-28T17:47:25,442 creating build/bdist.linux-armv7l/wheel/pub_worm-0.3.7.dist-info/WHEEL 2025-03-28T17:47:25,445 creating '/tmp/pip-wheel-nkfaq15q/pub_worm-0.3.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-28T17:47:25,447 adding 'pub_worm/__init__.py' 2025-03-28T17:47:25,449 adding 'pub_worm/biorxiv/__init__.py' 2025-03-28T17:47:25,450 adding 'pub_worm/biorxiv/biorxiv_api.py' 2025-03-28T17:47:25,452 adding 'pub_worm/ensembl/__init__.py' 2025-03-28T17:47:25,453 adding 'pub_worm/ensembl/ensembl_api.py' 2025-03-28T17:47:25,455 adding 'pub_worm/impact_factor/__init__.py' 2025-03-28T17:47:25,456 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2025-03-28T17:47:25,655 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2025-03-28T17:47:25,666 adding 'pub_worm/ncbi/__init__.py' 2025-03-28T17:47:25,669 adding 'pub_worm/ncbi/entreze_api.py' 2025-03-28T17:47:25,670 adding 'pub_worm/orcid/__init__.py' 2025-03-28T17:47:25,672 adding 'pub_worm/orcid/orcid_api.py' 2025-03-28T17:47:25,673 adding 'pub_worm/wormbase/__init__.py' 2025-03-28T17:47:25,674 adding 'pub_worm/wormbase/to_csv_helpers.py' 2025-03-28T17:47:25,676 adding 'pub_worm/wormbase/wormbase_api.py' 2025-03-28T17:47:25,678 adding 'pub_worm/wormbase/wormbase_util.py' 2025-03-28T17:47:25,679 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2025-03-28T17:47:25,681 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2025-03-28T17:47:25,682 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2025-03-28T17:47:25,684 adding 'tests/__init__.py' 2025-03-28T17:47:25,686 adding 'tests/impact_factor/__init__.py' 2025-03-28T17:47:25,687 adding 'tests/impact_factor/test_get_impact_factor.py' 2025-03-28T17:47:25,689 adding 'tests/ncbi/__init__.py' 2025-03-28T17:47:25,690 adding 'tests/ncbi/test_entreze_api.py' 2025-03-28T17:47:25,692 adding 'tests/orcid/__init__.py' 2025-03-28T17:47:25,703 adding 'tests/orcid/test_orcid_api.py' 2025-03-28T17:47:25,705 adding 'tests/wormbase/__init__.py' 2025-03-28T17:47:25,706 adding 'tests/wormbase/test_wormbase_api.py' 2025-03-28T17:47:25,707 adding 'pub_worm-0.3.7.dist-info/METADATA' 2025-03-28T17:47:25,708 adding 'pub_worm-0.3.7.dist-info/WHEEL' 2025-03-28T17:47:25,709 adding 'pub_worm-0.3.7.dist-info/top_level.txt' 2025-03-28T17:47:25,710 adding 'pub_worm-0.3.7.dist-info/RECORD' 2025-03-28T17:47:25,717 removing build/bdist.linux-armv7l/wheel 2025-03-28T17:47:25,843 Building wheel for pub-worm (setup.py): finished with status 'done' 2025-03-28T17:47:25,849 Created wheel for pub-worm: filename=pub_worm-0.3.7-py3-none-any.whl size=402739 sha256=0f2f872ab3a22ddebe1c28eb16071746212f933760f4caa29424a53b2bea79f4 2025-03-28T17:47:25,851 Stored in directory: /tmp/pip-ephem-wheel-cache-e2npm5vy/wheels/7e/30/28/593d294c82ab5796fbc39b162c86cb1bf968be680fa3d7d03e 2025-03-28T17:47:25,862 Successfully built pub-worm 2025-03-28T17:47:25,877 Removed build tracker: '/tmp/pip-build-tracker-vha7gy9v'