2025-03-28T19:08:20,582 Created temporary directory: /tmp/pip-build-tracker-x44ibquj 2025-03-28T19:08:20,583 Initialized build tracking at /tmp/pip-build-tracker-x44ibquj 2025-03-28T19:08:20,584 Created build tracker: /tmp/pip-build-tracker-x44ibquj 2025-03-28T19:08:20,585 Entered build tracker: /tmp/pip-build-tracker-x44ibquj 2025-03-28T19:08:20,586 Created temporary directory: /tmp/pip-wheel-15l8ouim 2025-03-28T19:08:20,589 Created temporary directory: /tmp/pip-ephem-wheel-cache-u5k9gzgz 2025-03-28T19:08:20,633 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-28T19:08:20,636 2 location(s) to search for versions of fugassem: 2025-03-28T19:08:20,636 * https://pypi.org/simple/fugassem/ 2025-03-28T19:08:20,636 * https://www.piwheels.org/simple/fugassem/ 2025-03-28T19:08:20,637 Fetching project page and analyzing links: https://pypi.org/simple/fugassem/ 2025-03-28T19:08:20,638 Getting page https://pypi.org/simple/fugassem/ 2025-03-28T19:08:20,640 Found index url https://pypi.org/simple/ 2025-03-28T19:08:20,863 Fetched page https://pypi.org/simple/fugassem/ as application/vnd.pypi.simple.v1+json 2025-03-28T19:08:20,866 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/a8/11/3b98faf4d0ae86ca8b47e66542298131299e1a5690ed402c1fb2c9a7b6bd/fugassem-0.3.6-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2025-03-28T19:08:20,867 Found link https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.6 2025-03-28T19:08:20,868 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/93/25/7840c6ebe7659ff06284d715409e8803b74518d005c73d33f85866bca04e/fugassem-0.3.7-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2025-03-28T19:08:20,869 Found link https://files.pythonhosted.org/packages/f9/2a/52e61cf5786eb229696c36dabd987a6bfd784d21759e8b8cc13ee308e6f6/fugassem-0.3.7.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.7 2025-03-28T19:08:20,869 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/6a/66/a03e2256049124c586fb987e0a3ea8ca897454e05b02670f013932a49c34/fugassem-0.3.8-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2025-03-28T19:08:20,870 Found link https://files.pythonhosted.org/packages/e3/5f/1c0e58cdc2ad6d676c4393798d078b7d4e2be724fb1fb3ccf5f02cc63a94/fugassem-0.3.8.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.8 2025-03-28T19:08:20,871 Fetching project page and analyzing links: https://www.piwheels.org/simple/fugassem/ 2025-03-28T19:08:20,872 Getting page https://www.piwheels.org/simple/fugassem/ 2025-03-28T19:08:20,874 Found index url https://www.piwheels.org/simple/ 2025-03-28T19:08:21,047 Fetched page https://www.piwheels.org/simple/fugassem/ as text/html 2025-03-28T19:08:21,048 Skipping link: No binaries permitted for fugassem: https://www.piwheels.org/simple/fugassem/fugassem-0.3.7-py3-none-any.whl#sha256=c8914eb9273780b43402591472cbd6c23e4af9a03d5812b1bee9ffe245200452 (from https://www.piwheels.org/simple/fugassem/) 2025-03-28T19:08:21,049 Skipping link: No binaries permitted for fugassem: https://www.piwheels.org/simple/fugassem/fugassem-0.3.6-py3-none-any.whl#sha256=5b176b302bdf4675d168571673169dbcec7f4210357aba5f48e87b3afa11b74a (from https://www.piwheels.org/simple/fugassem/) 2025-03-28T19:08:21,050 Skipping link: not a file: https://www.piwheels.org/simple/fugassem/ 2025-03-28T19:08:21,050 Skipping link: not a file: https://pypi.org/simple/fugassem/ 2025-03-28T19:08:21,070 Given no hashes to check 1 links for project 'fugassem': discarding no candidates 2025-03-28T19:08:21,072 Collecting fugassem==0.3.8 2025-03-28T19:08:21,074 Created temporary directory: /tmp/pip-unpack-e3r1cs7x 2025-03-28T19:08:21,298 Downloading fugassem-0.3.8.tar.gz (9.9 MB) 2025-03-28T19:08:25,360 Added fugassem==0.3.8 from https://files.pythonhosted.org/packages/e3/5f/1c0e58cdc2ad6d676c4393798d078b7d4e2be724fb1fb3ccf5f02cc63a94/fugassem-0.3.8.tar.gz to build tracker '/tmp/pip-build-tracker-x44ibquj' 2025-03-28T19:08:25,362 Running setup.py (path:/tmp/pip-wheel-15l8ouim/fugassem_8c38d7a37cb34712b920b445a6ac0c2d/setup.py) egg_info for package fugassem 2025-03-28T19:08:25,363 Created temporary directory: /tmp/pip-pip-egg-info-h8gu8rcp 2025-03-28T19:08:25,363 Preparing metadata (setup.py): started 2025-03-28T19:08:25,365 Running command python setup.py egg_info 2025-03-28T19:08:26,444 running egg_info 2025-03-28T19:08:26,474 creating /tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info 2025-03-28T19:08:26,475 writing /tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/PKG-INFO 2025-03-28T19:08:26,479 writing dependency_links to /tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/dependency_links.txt 2025-03-28T19:08:26,482 writing entry points to /tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/entry_points.txt 2025-03-28T19:08:26,484 writing top-level names to /tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/top_level.txt 2025-03-28T19:08:26,485 writing manifest file '/tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/SOURCES.txt' 2025-03-28T19:08:26,610 reading manifest file '/tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/SOURCES.txt' 2025-03-28T19:08:26,611 reading manifest template 'MANIFEST.in' 2025-03-28T19:08:26,632 adding license file 'LICENSE' 2025-03-28T19:08:26,637 writing manifest file '/tmp/pip-pip-egg-info-h8gu8rcp/fugassem.egg-info/SOURCES.txt' 2025-03-28T19:08:26,750 Preparing metadata (setup.py): finished with status 'done' 2025-03-28T19:08:26,754 Source in /tmp/pip-wheel-15l8ouim/fugassem_8c38d7a37cb34712b920b445a6ac0c2d has version 0.3.8, which satisfies requirement fugassem==0.3.8 from https://files.pythonhosted.org/packages/e3/5f/1c0e58cdc2ad6d676c4393798d078b7d4e2be724fb1fb3ccf5f02cc63a94/fugassem-0.3.8.tar.gz 2025-03-28T19:08:26,755 Removed fugassem==0.3.8 from https://files.pythonhosted.org/packages/e3/5f/1c0e58cdc2ad6d676c4393798d078b7d4e2be724fb1fb3ccf5f02cc63a94/fugassem-0.3.8.tar.gz from build tracker '/tmp/pip-build-tracker-x44ibquj' 2025-03-28T19:08:26,759 Created temporary directory: /tmp/pip-unpack-azq499jc 2025-03-28T19:08:26,760 Created temporary directory: /tmp/pip-unpack-nfb9bjvl 2025-03-28T19:08:26,761 Building wheels for collected packages: fugassem 2025-03-28T19:08:26,765 Created temporary directory: /tmp/pip-wheel-32kdu8w0 2025-03-28T19:08:26,765 Building wheel for fugassem (setup.py): started 2025-03-28T19:08:26,767 Destination directory: /tmp/pip-wheel-32kdu8w0 2025-03-28T19:08:26,767 Running command python setup.py bdist_wheel 2025-03-28T19:08:28,014 running bdist_wheel 2025-03-28T19:08:28,154 running build 2025-03-28T19:08:28,155 running build_py 2025-03-28T19:08:28,186 creating build/lib/fugassem 2025-03-28T19:08:28,188 copying fugassem/config.py -> build/lib/fugassem 2025-03-28T19:08:28,191 copying fugassem/utilities.py -> build/lib/fugassem 2025-03-28T19:08:28,194 copying fugassem/__init__.py -> build/lib/fugassem 2025-03-28T19:08:28,195 copying fugassem/fugassem.py -> build/lib/fugassem 2025-03-28T19:08:28,198 creating build/lib/fugassem/tools 2025-03-28T19:08:28,199 copying fugassem/tools/sum_to_family_abundance.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,202 copying fugassem/tools/abundance_RPK.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,204 copying fugassem/tools/extract_feature_subset.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,207 copying fugassem/tools/gene_abundance.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,209 copying fugassem/tools/abundance_normalization.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,211 copying fugassem/tools/prepare_annotation.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,213 copying fugassem/tools/prepare_coann_pairs.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,215 copying fugassem/tools/generate_stratified_mtx_input.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,218 copying fugassem/tools/prepare_seqSimilarity.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,220 copying fugassem/tools/stratified_abundance.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,223 copying fugassem/tools/performance_vis.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,225 copying fugassem/tools/prepare_contig.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,227 copying fugassem/tools/collect_seqSimilarity_results.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,229 copying fugassem/tools/__init__.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,230 copying fugassem/tools/gene_abundance_indexRef.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,232 copying fugassem/tools/abundance_smoothing.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,234 copying fugassem/tools/gene_catalog_abundance.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,236 copying fugassem/tools/generate_annotation_input.py -> build/lib/fugassem/tools 2025-03-28T19:08:28,239 creating build/lib/fugassem/preprocess 2025-03-28T19:08:28,241 copying fugassem/preprocess/convert_coann.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,243 copying fugassem/preprocess/refine_anns.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,245 copying fugassem/preprocess/build_union_terms.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,248 copying fugassem/preprocess/impute_nan.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,250 copying fugassem/preprocess/split_taxa.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,252 copying fugassem/preprocess/__init__.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,253 copying fugassem/preprocess/calculate_correlation.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,256 copying fugassem/preprocess/refine_abunds.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,258 copying fugassem/preprocess/collect_features.py -> build/lib/fugassem/preprocess 2025-03-28T19:08:28,262 creating build/lib/fugassem/predict 2025-03-28T19:08:28,263 copying fugassem/predict/predict_function.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,265 copying fugassem/predict/prepare_nextlayer_ml.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,268 copying fugassem/predict/merged_prediction.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,270 copying fugassem/predict/select_feature.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,272 copying fugassem/predict/collect_ml_results.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,275 copying fugassem/predict/machine_learning.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,278 copying fugassem/predict/__init__.py -> build/lib/fugassem/predict 2025-03-28T19:08:28,280 creating build/lib/fugassem/common 2025-03-28T19:08:28,281 copying fugassem/common/corrmp.py -> build/lib/fugassem/common 2025-03-28T19:08:28,284 copying fugassem/common/extract_feature_subset.py -> build/lib/fugassem/common 2025-03-28T19:08:28,286 copying fugassem/common/transpose.py -> build/lib/fugassem/common 2025-03-28T19:08:28,288 copying fugassem/common/table2_stats.py -> build/lib/fugassem/common 2025-03-28T19:08:28,290 copying fugassem/common/format_function.py -> build/lib/fugassem/common 2025-03-28T19:08:28,292 copying fugassem/common/geneontology.py -> build/lib/fugassem/common 2025-03-28T19:08:28,294 copying fugassem/common/table2.py -> build/lib/fugassem/common 2025-03-28T19:08:28,297 copying fugassem/common/dictation.py -> build/lib/fugassem/common 2025-03-28T19:08:28,299 copying fugassem/common/utils.py -> build/lib/fugassem/common 2025-03-28T19:08:28,302 copying fugassem/common/__init__.py -> build/lib/fugassem/common 2025-03-28T19:08:28,304 creating build/lib/fugassem/tasks 2025-03-28T19:08:28,305 copying fugassem/tasks/fugassem_process.py -> build/lib/fugassem/tasks 2025-03-28T19:08:28,308 copying fugassem/tasks/fugassem_prediction.py -> build/lib/fugassem/tasks 2025-03-28T19:08:28,310 copying fugassem/tasks/fugassem_preprocessing.py -> build/lib/fugassem/tasks 2025-03-28T19:08:28,314 copying fugassem/tasks/__init__.py -> build/lib/fugassem/tasks 2025-03-28T19:08:28,320 creating build/lib/fugassem/workflows 2025-03-28T19:08:28,322 copying fugassem/workflows/fugassem_workflow.py -> build/lib/fugassem/workflows 2025-03-28T19:08:28,327 creating build/lib/fugassem/data/GO 2025-03-28T19:08:28,329 copying fugassem/data/GO/go-basic.obo -> build/lib/fugassem/data/GO 2025-03-28T19:08:28,770 copying fugassem/data/GO/go.obo.gz -> build/lib/fugassem/data/GO 2025-03-28T19:08:28,845 running build_scripts 2025-03-28T19:08:28,846 creating build/scripts-3.11 2025-03-28T19:08:28,847 copying and adjusting fugassem/workflows/fugassem_workflow.py -> build/scripts-3.11 2025-03-28T19:08:28,849 changing mode of build/scripts-3.11/fugassem_workflow.py from 644 to 755 2025-03-28T19:08:28,879 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-28T19:08:28,879 !! 2025-03-28T19:08:28,880 ******************************************************************************** 2025-03-28T19:08:28,880 Please avoid running ``setup.py`` directly. 2025-03-28T19:08:28,881 Instead, use pypa/build, pypa/installer or other 2025-03-28T19:08:28,881 standards-based tools. 2025-03-28T19:08:28,882 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-28T19:08:28,883 ******************************************************************************** 2025-03-28T19:08:28,884 !! 2025-03-28T19:08:28,884 self.initialize_options() 2025-03-28T19:08:28,907 installing to build/bdist.linux-armv7l/wheel 2025-03-28T19:08:28,907 running install 2025-03-28T19:08:28,930 running install_lib 2025-03-28T19:08:28,958 creating build/bdist.linux-armv7l/wheel 2025-03-28T19:08:28,960 creating build/bdist.linux-armv7l/wheel/fugassem 2025-03-28T19:08:28,961 creating build/bdist.linux-armv7l/wheel/fugassem/workflows 2025-03-28T19:08:28,963 copying build/lib/fugassem/workflows/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/./fugassem/workflows 2025-03-28T19:08:28,966 creating build/bdist.linux-armv7l/wheel/fugassem/tools 2025-03-28T19:08:28,967 copying build/lib/fugassem/tools/sum_to_family_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,970 copying build/lib/fugassem/tools/abundance_RPK.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,972 copying build/lib/fugassem/tools/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,974 copying build/lib/fugassem/tools/gene_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,977 copying build/lib/fugassem/tools/abundance_normalization.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,979 copying build/lib/fugassem/tools/prepare_annotation.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,981 copying build/lib/fugassem/tools/prepare_coann_pairs.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,983 copying build/lib/fugassem/tools/generate_stratified_mtx_input.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,986 copying build/lib/fugassem/tools/prepare_seqSimilarity.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,988 copying build/lib/fugassem/tools/stratified_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,990 copying build/lib/fugassem/tools/performance_vis.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,992 copying build/lib/fugassem/tools/prepare_contig.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,994 copying build/lib/fugassem/tools/collect_seqSimilarity_results.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,996 copying build/lib/fugassem/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,997 copying build/lib/fugassem/tools/gene_abundance_indexRef.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:28,999 copying build/lib/fugassem/tools/abundance_smoothing.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:29,002 copying build/lib/fugassem/tools/gene_catalog_abundance.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:29,004 copying build/lib/fugassem/tools/generate_annotation_input.py -> build/bdist.linux-armv7l/wheel/./fugassem/tools 2025-03-28T19:08:29,007 copying build/lib/fugassem/config.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-03-28T19:08:29,009 creating build/bdist.linux-armv7l/wheel/fugassem/preprocess 2025-03-28T19:08:29,011 copying build/lib/fugassem/preprocess/convert_coann.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,013 copying build/lib/fugassem/preprocess/refine_anns.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,015 copying build/lib/fugassem/preprocess/build_union_terms.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,017 copying build/lib/fugassem/preprocess/impute_nan.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,019 copying build/lib/fugassem/preprocess/split_taxa.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,021 copying build/lib/fugassem/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,023 copying build/lib/fugassem/preprocess/calculate_correlation.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,025 copying build/lib/fugassem/preprocess/refine_abunds.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,028 copying build/lib/fugassem/preprocess/collect_features.py -> build/bdist.linux-armv7l/wheel/./fugassem/preprocess 2025-03-28T19:08:29,030 creating build/bdist.linux-armv7l/wheel/fugassem/data 2025-03-28T19:08:29,032 creating build/bdist.linux-armv7l/wheel/fugassem/data/GO 2025-03-28T19:08:29,033 copying build/lib/fugassem/data/GO/go-basic.obo -> build/bdist.linux-armv7l/wheel/./fugassem/data/GO 2025-03-28T19:08:29,499 copying build/lib/fugassem/data/GO/go.obo.gz -> build/bdist.linux-armv7l/wheel/./fugassem/data/GO 2025-03-28T19:08:29,580 copying build/lib/fugassem/utilities.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-03-28T19:08:29,586 copying build/lib/fugassem/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-03-28T19:08:29,591 creating build/bdist.linux-armv7l/wheel/fugassem/predict 2025-03-28T19:08:29,593 copying build/lib/fugassem/predict/predict_function.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,598 copying build/lib/fugassem/predict/prepare_nextlayer_ml.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,604 copying build/lib/fugassem/predict/merged_prediction.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,609 copying build/lib/fugassem/predict/select_feature.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,611 copying build/lib/fugassem/predict/collect_ml_results.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,613 copying build/lib/fugassem/predict/machine_learning.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,616 copying build/lib/fugassem/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/predict 2025-03-28T19:08:29,618 creating build/bdist.linux-armv7l/wheel/fugassem/common 2025-03-28T19:08:29,620 copying build/lib/fugassem/common/corrmp.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:29,623 copying build/lib/fugassem/common/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:29,625 copying build/lib/fugassem/common/transpose.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:29,628 copying build/lib/fugassem/common/table2_stats.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:29,680 copying build/lib/fugassem/common/format_function.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,223 copying build/lib/fugassem/common/geneontology.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,228 copying build/lib/fugassem/common/table2.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,236 copying build/lib/fugassem/common/dictation.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,242 copying build/lib/fugassem/common/utils.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,247 copying build/lib/fugassem/common/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/common 2025-03-28T19:08:30,252 creating build/bdist.linux-armv7l/wheel/fugassem/tasks 2025-03-28T19:08:30,254 copying build/lib/fugassem/tasks/fugassem_process.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-03-28T19:08:30,261 copying build/lib/fugassem/tasks/fugassem_prediction.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-03-28T19:08:30,267 copying build/lib/fugassem/tasks/fugassem_preprocessing.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-03-28T19:08:30,275 copying build/lib/fugassem/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fugassem/tasks 2025-03-28T19:08:30,279 copying build/lib/fugassem/fugassem.py -> build/bdist.linux-armv7l/wheel/./fugassem 2025-03-28T19:08:30,283 running install_egg_info 2025-03-28T19:08:30,337 running egg_info 2025-03-28T19:08:30,384 writing fugassem.egg-info/PKG-INFO 2025-03-28T19:08:30,388 writing dependency_links to fugassem.egg-info/dependency_links.txt 2025-03-28T19:08:30,392 writing entry points to fugassem.egg-info/entry_points.txt 2025-03-28T19:08:30,401 writing top-level names to fugassem.egg-info/top_level.txt 2025-03-28T19:08:30,448 reading manifest file 'fugassem.egg-info/SOURCES.txt' 2025-03-28T19:08:30,473 reading manifest template 'MANIFEST.in' 2025-03-28T19:08:30,521 adding license file 'LICENSE' 2025-03-28T19:08:30,528 writing manifest file 'fugassem.egg-info/SOURCES.txt' 2025-03-28T19:08:30,530 Copying fugassem.egg-info to build/bdist.linux-armv7l/wheel/./fugassem-0.3.8-py3.11.egg-info 2025-03-28T19:08:30,554 running install_scripts 2025-03-28T19:08:30,555 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.8.data/scripts 2025-03-28T19:08:30,558 copying build/scripts-3.11/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/fugassem-0.3.8.data/scripts 2025-03-28T19:08:30,561 changing mode of build/bdist.linux-armv7l/wheel/fugassem-0.3.8.data/scripts/fugassem_workflow.py to 755 2025-03-28T19:08:30,581 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.8.dist-info/WHEEL 2025-03-28T19:08:30,584 creating '/tmp/pip-wheel-32kdu8w0/fugassem-0.3.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-28T19:08:30,586 adding 'fugassem/__init__.py' 2025-03-28T19:08:30,589 adding 'fugassem/config.py' 2025-03-28T19:08:30,590 adding 'fugassem/fugassem.py' 2025-03-28T19:08:30,594 adding 'fugassem/utilities.py' 2025-03-28T19:08:30,596 adding 'fugassem/common/__init__.py' 2025-03-28T19:08:30,598 adding 'fugassem/common/corrmp.py' 2025-03-28T19:08:30,610 adding 'fugassem/common/dictation.py' 2025-03-28T19:08:30,611 adding 'fugassem/common/extract_feature_subset.py' 2025-03-28T19:08:30,613 adding 'fugassem/common/format_function.py' 2025-03-28T19:08:30,615 adding 'fugassem/common/geneontology.py' 2025-03-28T19:08:30,619 adding 'fugassem/common/table2.py' 2025-03-28T19:08:30,620 adding 'fugassem/common/table2_stats.py' 2025-03-28T19:08:30,622 adding 'fugassem/common/transpose.py' 2025-03-28T19:08:30,624 adding 'fugassem/common/utils.py' 2025-03-28T19:08:32,996 adding 'fugassem/data/GO/go-basic.obo' 2025-03-28T19:08:33,669 adding 'fugassem/data/GO/go.obo.gz' 2025-03-28T19:08:33,699 adding 'fugassem/predict/__init__.py' 2025-03-28T19:08:33,700 adding 'fugassem/predict/collect_ml_results.py' 2025-03-28T19:08:33,703 adding 'fugassem/predict/machine_learning.py' 2025-03-28T19:08:33,705 adding 'fugassem/predict/merged_prediction.py' 2025-03-28T19:08:33,707 adding 'fugassem/predict/predict_function.py' 2025-03-28T19:08:33,708 adding 'fugassem/predict/prepare_nextlayer_ml.py' 2025-03-28T19:08:33,710 adding 'fugassem/predict/select_feature.py' 2025-03-28T19:08:33,711 adding 'fugassem/preprocess/__init__.py' 2025-03-28T19:08:33,714 adding 'fugassem/preprocess/build_union_terms.py' 2025-03-28T19:08:33,716 adding 'fugassem/preprocess/calculate_correlation.py' 2025-03-28T19:08:33,717 adding 'fugassem/preprocess/collect_features.py' 2025-03-28T19:08:33,719 adding 'fugassem/preprocess/convert_coann.py' 2025-03-28T19:08:33,720 adding 'fugassem/preprocess/impute_nan.py' 2025-03-28T19:08:33,722 adding 'fugassem/preprocess/refine_abunds.py' 2025-03-28T19:08:33,723 adding 'fugassem/preprocess/refine_anns.py' 2025-03-28T19:08:33,725 adding 'fugassem/preprocess/split_taxa.py' 2025-03-28T19:08:33,727 adding 'fugassem/tasks/__init__.py' 2025-03-28T19:08:33,729 adding 'fugassem/tasks/fugassem_prediction.py' 2025-03-28T19:08:33,734 adding 'fugassem/tasks/fugassem_preprocessing.py' 2025-03-28T19:08:33,736 adding 'fugassem/tasks/fugassem_process.py' 2025-03-28T19:08:33,738 adding 'fugassem/tools/__init__.py' 2025-03-28T19:08:33,739 adding 'fugassem/tools/abundance_RPK.py' 2025-03-28T19:08:33,741 adding 'fugassem/tools/abundance_normalization.py' 2025-03-28T19:08:33,742 adding 'fugassem/tools/abundance_smoothing.py' 2025-03-28T19:08:33,744 adding 'fugassem/tools/collect_seqSimilarity_results.py' 2025-03-28T19:08:33,745 adding 'fugassem/tools/extract_feature_subset.py' 2025-03-28T19:08:33,747 adding 'fugassem/tools/gene_abundance.py' 2025-03-28T19:08:33,748 adding 'fugassem/tools/gene_abundance_indexRef.py' 2025-03-28T19:08:33,750 adding 'fugassem/tools/gene_catalog_abundance.py' 2025-03-28T19:08:33,752 adding 'fugassem/tools/generate_annotation_input.py' 2025-03-28T19:08:33,754 adding 'fugassem/tools/generate_stratified_mtx_input.py' 2025-03-28T19:08:33,756 adding 'fugassem/tools/performance_vis.py' 2025-03-28T19:08:33,758 adding 'fugassem/tools/prepare_annotation.py' 2025-03-28T19:08:33,759 adding 'fugassem/tools/prepare_coann_pairs.py' 2025-03-28T19:08:33,761 adding 'fugassem/tools/prepare_contig.py' 2025-03-28T19:08:33,763 adding 'fugassem/tools/prepare_seqSimilarity.py' 2025-03-28T19:08:33,764 adding 'fugassem/tools/stratified_abundance.py' 2025-03-28T19:08:33,766 adding 'fugassem/tools/sum_to_family_abundance.py' 2025-03-28T19:08:33,769 adding 'fugassem/workflows/fugassem_workflow.py' 2025-03-28T19:08:33,772 adding 'fugassem-0.3.8.data/scripts/fugassem_workflow.py' 2025-03-28T19:08:33,774 adding 'fugassem-0.3.8.dist-info/LICENSE' 2025-03-28T19:08:33,775 adding 'fugassem-0.3.8.dist-info/METADATA' 2025-03-28T19:08:33,777 adding 'fugassem-0.3.8.dist-info/WHEEL' 2025-03-28T19:08:33,778 adding 'fugassem-0.3.8.dist-info/entry_points.txt' 2025-03-28T19:08:33,779 adding 'fugassem-0.3.8.dist-info/top_level.txt' 2025-03-28T19:08:33,780 adding 'fugassem-0.3.8.dist-info/RECORD' 2025-03-28T19:08:33,874 removing build/bdist.linux-armv7l/wheel 2025-03-28T19:08:34,023 Building wheel for fugassem (setup.py): finished with status 'done' 2025-03-28T19:08:34,114 Created wheel for fugassem: filename=fugassem-0.3.8-py3-none-any.whl size=8903613 sha256=73e4b9e6e5c3bbe6f3344e52cb269b0d4235d41e9be2fb740bf4141376948bb3 2025-03-28T19:08:34,115 Stored in directory: /tmp/pip-ephem-wheel-cache-u5k9gzgz/wheels/c7/aa/ac/a1993d80a96bd60bdc7d73997df0e43470fb3764d7ca5409d9 2025-03-28T19:08:34,130 Successfully built fugassem 2025-03-28T19:08:34,346 Removed build tracker: '/tmp/pip-build-tracker-x44ibquj'