2025-03-28T22:54:24,867 Created temporary directory: /tmp/pip-build-tracker-_8sobo4i 2025-03-28T22:54:24,868 Initialized build tracking at /tmp/pip-build-tracker-_8sobo4i 2025-03-28T22:54:24,869 Created build tracker: /tmp/pip-build-tracker-_8sobo4i 2025-03-28T22:54:24,869 Entered build tracker: /tmp/pip-build-tracker-_8sobo4i 2025-03-28T22:54:24,870 Created temporary directory: /tmp/pip-wheel-oyyh_aer 2025-03-28T22:54:24,874 Created temporary directory: /tmp/pip-ephem-wheel-cache-slpmd2o9 2025-03-28T22:54:24,918 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-03-28T22:54:24,921 2 location(s) to search for versions of abutils: 2025-03-28T22:54:24,921 * https://pypi.org/simple/abutils/ 2025-03-28T22:54:24,921 * https://www.piwheels.org/simple/abutils/ 2025-03-28T22:54:24,922 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2025-03-28T22:54:24,922 Getting page https://pypi.org/simple/abutils/ 2025-03-28T22:54:24,924 Found index 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(requires-python:>=3.8), version: 0.4.18 2025-03-28T22:54:25,203 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/c5/81/8a9d99a2f18ae4e3486a3144bc86ba974b7572e0af7e393d94247c6c07c2/abutils-0.5.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8) 2025-03-28T22:54:25,203 Found link https://files.pythonhosted.org/packages/03/a6/9f22bbc825b9f9d4b1ab512b5dd6f839e0d34713e3d9314101dc256a6153/abutils-0.5.0.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.5.0 2025-03-28T22:54:25,204 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e2/16/e0fa4186d41cde63deecd3ab29d87a252115767d6ed8bdddfefa8c38fdc7/abutils-0.5.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.10) 2025-03-28T22:54:25,204 Found link https://files.pythonhosted.org/packages/3e/6d/7f9b56899d88600fa359a8712552225ff147656253db26861756f9c8af07/abutils-0.5.1.tar.gz 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https://www.piwheels.org/simple/abutils/abutils-0.0.2-py3-none-any.whl#sha256=fb1485c1bdfebb4961c6b63db9ae9c45af6af544bf5a1d88830bff9601c333f7 (from https://www.piwheels.org/simple/abutils/) 2025-03-28T22:54:25,409 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.1-py3-none-any.whl#sha256=80befe258b5d18e6293ffa5f53b4c6fca19cd9c57418df3ad521a374f3827c35 (from https://www.piwheels.org/simple/abutils/) 2025-03-28T22:54:25,410 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2025-03-28T22:54:25,410 Skipping link: not a file: https://pypi.org/simple/abutils/ 2025-03-28T22:54:25,434 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2025-03-28T22:54:25,436 Collecting abutils==0.5.1 2025-03-28T22:54:25,438 Created temporary directory: /tmp/pip-unpack-bw9_jpys 2025-03-28T22:54:25,586 Downloading abutils-0.5.1.tar.gz (86.1 MB) 2025-03-28T22:54:39,592 Added abutils==0.5.1 from https://files.pythonhosted.org/packages/3e/6d/7f9b56899d88600fa359a8712552225ff147656253db26861756f9c8af07/abutils-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-_8sobo4i' 2025-03-28T22:54:39,594 Running setup.py (path:/tmp/pip-wheel-oyyh_aer/abutils_e339d81e56c446d38bb14eaa21634494/setup.py) egg_info for package abutils 2025-03-28T22:54:39,595 Created temporary directory: /tmp/pip-pip-egg-info-37gai0aj 2025-03-28T22:54:39,595 Preparing metadata (setup.py): started 2025-03-28T22:54:39,597 Running command python setup.py egg_info 2025-03-28T22:54:40,166 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2025-03-28T22:54:40,166 !! 2025-03-28T22:54:40,168 ******************************************************************************** 2025-03-28T22:54:40,168 Usage of dash-separated 'description-file' will not be supported in future 2025-03-28T22:54:40,169 versions. Please use the underscore name 'description_file' instead. 2025-03-28T22:54:40,170 This deprecation is overdue, please update your project and remove deprecated 2025-03-28T22:54:40,171 calls to avoid build errors in the future. 2025-03-28T22:54:40,172 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-03-28T22:54:40,172 ******************************************************************************** 2025-03-28T22:54:40,174 !! 2025-03-28T22:54:40,174 opt = self.warn_dash_deprecation(opt, section) 2025-03-28T22:54:40,713 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2025-03-28T22:54:40,713 !! 2025-03-28T22:54:40,715 ******************************************************************************** 2025-03-28T22:54:40,715 Usage of dash-separated 'description-file' will not be supported in future 2025-03-28T22:54:40,716 versions. Please use the underscore name 'description_file' instead. 2025-03-28T22:54:40,717 This deprecation is overdue, please update your project and remove deprecated 2025-03-28T22:54:40,718 calls to avoid build errors in the future. 2025-03-28T22:54:40,719 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-03-28T22:54:40,719 ******************************************************************************** 2025-03-28T22:54:40,720 !! 2025-03-28T22:54:40,721 opt = self.warn_dash_deprecation(opt, section) 2025-03-28T22:54:40,748 running egg_info 2025-03-28T22:54:40,777 creating /tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info 2025-03-28T22:54:40,779 writing /tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/PKG-INFO 2025-03-28T22:54:40,783 writing dependency_links to /tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/dependency_links.txt 2025-03-28T22:54:40,785 writing requirements to /tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/requires.txt 2025-03-28T22:54:40,786 writing top-level names to /tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/top_level.txt 2025-03-28T22:54:40,787 writing manifest file '/tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/SOURCES.txt' 2025-03-28T22:54:40,885 reading manifest file '/tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/SOURCES.txt' 2025-03-28T22:54:40,886 reading manifest template 'MANIFEST.in' 2025-03-28T22:54:40,891 warning: no files found matching 'abutils/tenx/*' 2025-03-28T22:54:40,905 adding license file 'LICENSE' 2025-03-28T22:54:40,914 writing manifest file '/tmp/pip-pip-egg-info-37gai0aj/abutils.egg-info/SOURCES.txt' 2025-03-28T22:54:41,024 Preparing metadata (setup.py): finished with status 'done' 2025-03-28T22:54:41,029 Source in /tmp/pip-wheel-oyyh_aer/abutils_e339d81e56c446d38bb14eaa21634494 has version 0.5.1, which satisfies requirement abutils==0.5.1 from https://files.pythonhosted.org/packages/3e/6d/7f9b56899d88600fa359a8712552225ff147656253db26861756f9c8af07/abutils-0.5.1.tar.gz 2025-03-28T22:54:41,030 Removed abutils==0.5.1 from https://files.pythonhosted.org/packages/3e/6d/7f9b56899d88600fa359a8712552225ff147656253db26861756f9c8af07/abutils-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-_8sobo4i' 2025-03-28T22:54:41,039 Created temporary directory: /tmp/pip-unpack-pzz05s0h 2025-03-28T22:54:41,040 Created temporary directory: /tmp/pip-unpack-wcezw7i7 2025-03-28T22:54:41,041 Building wheels for collected packages: abutils 2025-03-28T22:54:41,045 Created temporary directory: /tmp/pip-wheel-mzqop0q2 2025-03-28T22:54:41,045 Building wheel for abutils (setup.py): started 2025-03-28T22:54:41,047 Destination directory: /tmp/pip-wheel-mzqop0q2 2025-03-28T22:54:41,047 Running command python setup.py bdist_wheel 2025-03-28T22:54:41,557 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2025-03-28T22:54:41,557 !! 2025-03-28T22:54:41,558 ******************************************************************************** 2025-03-28T22:54:41,559 Usage of dash-separated 'description-file' will not be supported in future 2025-03-28T22:54:41,559 versions. Please use the underscore name 'description_file' instead. 2025-03-28T22:54:41,560 This deprecation is overdue, please update your project and remove deprecated 2025-03-28T22:54:41,561 calls to avoid build errors in the future. 2025-03-28T22:54:41,562 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-03-28T22:54:41,562 ******************************************************************************** 2025-03-28T22:54:41,564 !! 2025-03-28T22:54:41,564 opt = self.warn_dash_deprecation(opt, section) 2025-03-28T22:54:42,093 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2025-03-28T22:54:42,094 !! 2025-03-28T22:54:42,095 ******************************************************************************** 2025-03-28T22:54:42,095 Usage of dash-separated 'description-file' will not be supported in future 2025-03-28T22:54:42,096 versions. Please use the underscore name 'description_file' instead. 2025-03-28T22:54:42,097 This deprecation is overdue, please update your project and remove deprecated 2025-03-28T22:54:42,098 calls to avoid build errors in the future. 2025-03-28T22:54:42,099 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-03-28T22:54:42,099 ******************************************************************************** 2025-03-28T22:54:42,101 !! 2025-03-28T22:54:42,101 opt = self.warn_dash_deprecation(opt, section) 2025-03-28T22:54:42,103 running bdist_wheel 2025-03-28T22:54:42,237 running build 2025-03-28T22:54:42,238 running build_py 2025-03-28T22:54:42,269 creating build/lib/abutils 2025-03-28T22:54:42,271 copying abutils/pp.py -> build/lib/abutils 2025-03-28T22:54:42,273 copying abutils/cl.py -> build/lib/abutils 2025-03-28T22:54:42,275 copying abutils/bin.py -> build/lib/abutils 2025-03-28T22:54:42,278 copying abutils/pl.py -> build/lib/abutils 2025-03-28T22:54:42,280 copying abutils/tl.py -> build/lib/abutils 2025-03-28T22:54:42,282 copying abutils/version.py -> build/lib/abutils 2025-03-28T22:54:42,283 copying abutils/io.py -> build/lib/abutils 2025-03-28T22:54:42,287 copying abutils/log.py -> build/lib/abutils 2025-03-28T22:54:42,289 copying abutils/__init__.py -> build/lib/abutils 2025-03-28T22:54:42,291 creating build/lib/abutils/plots 2025-03-28T22:54:42,292 copying abutils/plots/ring.py -> build/lib/abutils/plots 2025-03-28T22:54:42,295 copying abutils/plots/base.py -> build/lib/abutils/plots 2025-03-28T22:54:42,296 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2025-03-28T22:54:42,299 copying abutils/plots/summary.py -> build/lib/abutils/plots 2025-03-28T22:54:42,302 copying abutils/plots/data.py -> build/lib/abutils/plots 2025-03-28T22:54:42,305 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2025-03-28T22:54:42,307 copying abutils/plots/donut.py -> build/lib/abutils/plots 2025-03-28T22:54:42,310 copying abutils/plots/kde.py -> build/lib/abutils/plots 2025-03-28T22:54:42,314 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2025-03-28T22:54:42,317 copying abutils/plots/utils.py -> build/lib/abutils/plots 2025-03-28T22:54:42,319 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2025-03-28T22:54:42,321 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2025-03-28T22:54:42,323 copying abutils/plots/bar.py -> build/lib/abutils/plots 2025-03-28T22:54:42,327 creating build/lib/abutils/tools 2025-03-28T22:54:42,328 copying abutils/tools/preprocessing.py -> build/lib/abutils/tools 2025-03-28T22:54:42,332 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2025-03-28T22:54:42,336 copying abutils/tools/cloning.py -> build/lib/abutils/tools 2025-03-28T22:54:42,339 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2025-03-28T22:54:42,344 copying abutils/tools/log.py -> build/lib/abutils/tools 2025-03-28T22:54:42,347 copying abutils/tools/search.py -> build/lib/abutils/tools 2025-03-28T22:54:42,349 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2025-03-28T22:54:42,351 copying abutils/tools/similarity.py -> build/lib/abutils/tools 2025-03-28T22:54:42,355 copying abutils/tools/anarci.py -> build/lib/abutils/tools 2025-03-28T22:54:42,357 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2025-03-28T22:54:42,361 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2025-03-28T22:54:42,365 creating build/lib/abutils/utils 2025-03-28T22:54:42,366 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2025-03-28T22:54:42,369 copying abutils/utils/s3.py -> build/lib/abutils/utils 2025-03-28T22:54:42,372 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2025-03-28T22:54:42,375 copying abutils/utils/convert.py -> build/lib/abutils/utils 2025-03-28T22:54:42,377 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2025-03-28T22:54:42,379 copying abutils/utils/path.py -> build/lib/abutils/utils 2025-03-28T22:54:42,382 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2025-03-28T22:54:42,385 copying abutils/utils/codons.py -> build/lib/abutils/utils 2025-03-28T22:54:42,387 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2025-03-28T22:54:42,389 copying abutils/utils/circos.py -> build/lib/abutils/utils 2025-03-28T22:54:42,391 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2025-03-28T22:54:42,393 copying abutils/utils/click.py -> build/lib/abutils/utils 2025-03-28T22:54:42,395 copying abutils/utils/color.py -> build/lib/abutils/utils 2025-03-28T22:54:42,398 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2025-03-28T22:54:42,401 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2025-03-28T22:54:42,404 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2025-03-28T22:54:42,406 copying abutils/utils/log.py -> build/lib/abutils/utils 2025-03-28T22:54:42,409 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2025-03-28T22:54:42,411 copying abutils/utils/database.py -> build/lib/abutils/utils 2025-03-28T22:54:42,413 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2025-03-28T22:54:42,416 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2025-03-28T22:54:42,419 creating build/lib/abutils/core 2025-03-28T22:54:42,420 copying abutils/core/sequence.py -> build/lib/abutils/core 2025-03-28T22:54:42,424 copying abutils/core/lineage.py -> build/lib/abutils/core 2025-03-28T22:54:42,427 copying abutils/core/pair.py -> build/lib/abutils/core 2025-03-28T22:54:42,431 copying abutils/core/__init__.py -> build/lib/abutils/core 2025-03-28T22:54:42,433 creating build/lib/abutils/preprocess 2025-03-28T22:54:42,434 copying abutils/preprocess/preprocess.py -> build/lib/abutils/preprocess 2025-03-28T22:54:42,437 copying abutils/preprocess/__init__.py -> build/lib/abutils/preprocess 2025-03-28T22:54:42,440 creating build/lib/abutils/tests 2025-03-28T22:54:42,441 copying abutils/tests/test_sequence.py -> build/lib/abutils/tests 2025-03-28T22:54:42,444 copying abutils/tests/test_color.py -> build/lib/abutils/tests 2025-03-28T22:54:42,446 copying abutils/tests/test_cluster.py -> build/lib/abutils/tests 2025-03-28T22:54:42,448 copying abutils/tests/test_pair.py -> build/lib/abutils/tests 2025-03-28T22:54:42,451 copying abutils/tests/test_phylo.py -> build/lib/abutils/tests 2025-03-28T22:54:42,453 copying abutils/tests/test_clonify.py -> build/lib/abutils/tests 2025-03-28T22:54:42,456 copying abutils/tests/test_preprocessing.py -> build/lib/abutils/tests 2025-03-28T22:54:42,459 copying abutils/tests/test_alignment.py -> build/lib/abutils/tests 2025-03-28T22:54:42,462 copying abutils/tests/test_utilities.py -> build/lib/abutils/tests 2025-03-28T22:54:42,463 copying abutils/tests/__init__.py -> build/lib/abutils/tests 2025-03-28T22:54:42,465 copying abutils/tests/test_cloning.py -> build/lib/abutils/tests 2025-03-28T22:54:42,467 creating build/lib/abutils/plots/mixins 2025-03-28T22:54:42,468 copying abutils/plots/mixins/hue.py -> build/lib/abutils/plots/mixins 2025-03-28T22:54:42,470 copying abutils/plots/mixins/__init__.py -> build/lib/abutils/plots/mixins 2025-03-28T22:54:42,472 creating build/lib/abutils/plots/models 2025-03-28T22:54:42,473 copying abutils/plots/models/data.py -> build/lib/abutils/plots/models 2025-03-28T22:54:42,476 copying abutils/plots/models/__init__.py -> build/lib/abutils/plots/models 2025-03-28T22:54:42,478 running egg_info 2025-03-28T22:54:42,507 writing abutils.egg-info/PKG-INFO 2025-03-28T22:54:42,511 writing dependency_links to abutils.egg-info/dependency_links.txt 2025-03-28T22:54:42,513 writing requirements to abutils.egg-info/requires.txt 2025-03-28T22:54:42,514 writing top-level names to abutils.egg-info/top_level.txt 2025-03-28T22:54:42,554 reading manifest file 'abutils.egg-info/SOURCES.txt' 2025-03-28T22:54:42,569 reading manifest template 'MANIFEST.in' 2025-03-28T22:54:42,573 warning: no files found matching 'abutils/tenx/*' 2025-03-28T22:54:42,586 adding license file 'LICENSE' 2025-03-28T22:54:42,597 writing manifest file 'abutils.egg-info/SOURCES.txt' 2025-03-28T22:54:42,599 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries' is absent from the `packages` configuration. 2025-03-28T22:54:42,600 !! 2025-03-28T22:54:42,601 ******************************************************************************** 2025-03-28T22:54:42,602 ############################ 2025-03-28T22:54:42,602 # Package would be ignored # 2025-03-28T22:54:42,603 ############################ 2025-03-28T22:54:42,603 Python recognizes 'abutils.binaries' as an importable package[^1], 2025-03-28T22:54:42,604 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,605 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,606 package, please make sure that 'abutils.binaries' is explicitly added 2025-03-28T22:54:42,606 to the `packages` configuration field. 2025-03-28T22:54:42,607 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,608 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,609 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,611 If you don't want 'abutils.binaries' to be distributed and are 2025-03-28T22:54:42,612 already explicitly excluding 'abutils.binaries' via 2025-03-28T22:54:42,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,613 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,614 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,616 even if it does not contain any `.py` files. 2025-03-28T22:54:42,617 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,617 directory, all directories are treated like packages. 2025-03-28T22:54:42,618 ******************************************************************************** 2025-03-28T22:54:42,619 !! 2025-03-28T22:54:42,620 check.warn(importable) 2025-03-28T22:54:42,620 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_darwin' is absent from the `packages` configuration. 2025-03-28T22:54:42,621 !! 2025-03-28T22:54:42,622 ******************************************************************************** 2025-03-28T22:54:42,622 ############################ 2025-03-28T22:54:42,623 # Package would be ignored # 2025-03-28T22:54:42,623 ############################ 2025-03-28T22:54:42,624 Python recognizes 'abutils.binaries.mafft_darwin' as an importable package[^1], 2025-03-28T22:54:42,624 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,626 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,626 package, please make sure that 'abutils.binaries.mafft_darwin' is explicitly added 2025-03-28T22:54:42,627 to the `packages` configuration field. 2025-03-28T22:54:42,629 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,630 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,631 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,633 If you don't want 'abutils.binaries.mafft_darwin' to be distributed and are 2025-03-28T22:54:42,634 already explicitly excluding 'abutils.binaries.mafft_darwin' via 2025-03-28T22:54:42,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,635 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,637 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,641 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,641 even if it does not contain any `.py` files. 2025-03-28T22:54:42,642 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,642 directory, all directories are treated like packages. 2025-03-28T22:54:42,643 ******************************************************************************** 2025-03-28T22:54:42,644 !! 2025-03-28T22:54:42,645 check.warn(importable) 2025-03-28T22:54:42,646 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_darwin.mafftdir.bin' is absent from the `packages` configuration. 2025-03-28T22:54:42,646 !! 2025-03-28T22:54:42,647 ******************************************************************************** 2025-03-28T22:54:42,648 ############################ 2025-03-28T22:54:42,648 # Package would be ignored # 2025-03-28T22:54:42,649 ############################ 2025-03-28T22:54:42,649 Python recognizes 'abutils.binaries.mafft_darwin.mafftdir.bin' as an importable package[^1], 2025-03-28T22:54:42,650 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,651 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,651 package, please make sure that 'abutils.binaries.mafft_darwin.mafftdir.bin' is explicitly added 2025-03-28T22:54:42,652 to the `packages` configuration field. 2025-03-28T22:54:42,655 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,657 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,657 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,658 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,660 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,661 If you don't want 'abutils.binaries.mafft_darwin.mafftdir.bin' to be distributed and are 2025-03-28T22:54:42,662 already explicitly excluding 'abutils.binaries.mafft_darwin.mafftdir.bin' via 2025-03-28T22:54:42,662 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,663 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,663 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,665 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,668 even if it does not contain any `.py` files. 2025-03-28T22:54:42,669 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,670 directory, all directories are treated like packages. 2025-03-28T22:54:42,670 ******************************************************************************** 2025-03-28T22:54:42,671 !! 2025-03-28T22:54:42,672 check.warn(importable) 2025-03-28T22:54:42,673 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_darwin.mafftdir.libexec' is absent from the `packages` configuration. 2025-03-28T22:54:42,674 !! 2025-03-28T22:54:42,675 ******************************************************************************** 2025-03-28T22:54:42,675 ############################ 2025-03-28T22:54:42,676 # Package would be ignored # 2025-03-28T22:54:42,677 ############################ 2025-03-28T22:54:42,677 Python recognizes 'abutils.binaries.mafft_darwin.mafftdir.libexec' as an importable package[^1], 2025-03-28T22:54:42,678 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,679 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,679 package, please make sure that 'abutils.binaries.mafft_darwin.mafftdir.libexec' is explicitly added 2025-03-28T22:54:42,680 to the `packages` configuration field. 2025-03-28T22:54:42,680 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,681 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,681 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,682 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,684 If you don't want 'abutils.binaries.mafft_darwin.mafftdir.libexec' to be distributed and are 2025-03-28T22:54:42,685 already explicitly excluding 'abutils.binaries.mafft_darwin.mafftdir.libexec' via 2025-03-28T22:54:42,686 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,687 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,688 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,689 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,691 even if it does not contain any `.py` files. 2025-03-28T22:54:42,692 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,692 directory, all directories are treated like packages. 2025-03-28T22:54:42,693 ******************************************************************************** 2025-03-28T22:54:42,694 !! 2025-03-28T22:54:42,694 check.warn(importable) 2025-03-28T22:54:42,695 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_linux' is absent from the `packages` configuration. 2025-03-28T22:54:42,695 !! 2025-03-28T22:54:42,697 ******************************************************************************** 2025-03-28T22:54:42,697 ############################ 2025-03-28T22:54:42,698 # Package would be ignored # 2025-03-28T22:54:42,699 ############################ 2025-03-28T22:54:42,700 Python recognizes 'abutils.binaries.mafft_linux' as an importable package[^1], 2025-03-28T22:54:42,700 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,701 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,702 package, please make sure that 'abutils.binaries.mafft_linux' is explicitly added 2025-03-28T22:54:42,702 to the `packages` configuration field. 2025-03-28T22:54:42,703 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,705 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,706 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,708 If you don't want 'abutils.binaries.mafft_linux' to be distributed and are 2025-03-28T22:54:42,709 already explicitly excluding 'abutils.binaries.mafft_linux' via 2025-03-28T22:54:42,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,710 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,710 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,732 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,829 even if it does not contain any `.py` files. 2025-03-28T22:54:42,829 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,834 directory, all directories are treated like packages. 2025-03-28T22:54:42,834 ******************************************************************************** 2025-03-28T22:54:42,835 !! 2025-03-28T22:54:42,835 check.warn(importable) 2025-03-28T22:54:42,836 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_linux.mafftdir.bin' is absent from the `packages` configuration. 2025-03-28T22:54:42,836 !! 2025-03-28T22:54:42,838 ******************************************************************************** 2025-03-28T22:54:42,839 ############################ 2025-03-28T22:54:42,840 # Package would be ignored # 2025-03-28T22:54:42,841 ############################ 2025-03-28T22:54:42,842 Python recognizes 'abutils.binaries.mafft_linux.mafftdir.bin' as an importable package[^1], 2025-03-28T22:54:42,843 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,849 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,849 package, please make sure that 'abutils.binaries.mafft_linux.mafftdir.bin' is explicitly added 2025-03-28T22:54:42,850 to the `packages` configuration field. 2025-03-28T22:54:42,851 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,859 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,860 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,864 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,865 If you don't want 'abutils.binaries.mafft_linux.mafftdir.bin' to be distributed and are 2025-03-28T22:54:42,865 already explicitly excluding 'abutils.binaries.mafft_linux.mafftdir.bin' via 2025-03-28T22:54:42,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,867 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,868 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,870 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,872 even if it does not contain any `.py` files. 2025-03-28T22:54:42,875 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,880 directory, all directories are treated like packages. 2025-03-28T22:54:42,886 ******************************************************************************** 2025-03-28T22:54:42,887 !! 2025-03-28T22:54:42,887 check.warn(importable) 2025-03-28T22:54:42,888 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.binaries.mafft_linux.mafftdir.libexec' is absent from the `packages` configuration. 2025-03-28T22:54:42,888 !! 2025-03-28T22:54:42,889 ******************************************************************************** 2025-03-28T22:54:42,890 ############################ 2025-03-28T22:54:42,890 # Package would be ignored # 2025-03-28T22:54:42,891 ############################ 2025-03-28T22:54:42,891 Python recognizes 'abutils.binaries.mafft_linux.mafftdir.libexec' as an importable package[^1], 2025-03-28T22:54:42,891 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,892 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,893 package, please make sure that 'abutils.binaries.mafft_linux.mafftdir.libexec' is explicitly added 2025-03-28T22:54:42,893 to the `packages` configuration field. 2025-03-28T22:54:42,894 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,895 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,896 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,898 If you don't want 'abutils.binaries.mafft_linux.mafftdir.libexec' to be distributed and are 2025-03-28T22:54:42,899 already explicitly excluding 'abutils.binaries.mafft_linux.mafftdir.libexec' via 2025-03-28T22:54:42,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,901 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,902 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,905 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,906 even if it does not contain any `.py` files. 2025-03-28T22:54:42,906 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,907 directory, all directories are treated like packages. 2025-03-28T22:54:42,907 ******************************************************************************** 2025-03-28T22:54:42,908 !! 2025-03-28T22:54:42,909 check.warn(importable) 2025-03-28T22:54:42,909 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2025-03-28T22:54:42,910 !! 2025-03-28T22:54:42,911 ******************************************************************************** 2025-03-28T22:54:42,912 ############################ 2025-03-28T22:54:42,912 # Package would be ignored # 2025-03-28T22:54:42,913 ############################ 2025-03-28T22:54:42,913 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2025-03-28T22:54:42,914 but it is absent from setuptools' `packages` configuration. 2025-03-28T22:54:42,915 This leads to an ambiguous overall configuration. If you want to distribute this 2025-03-28T22:54:42,916 package, please make sure that 'abutils.utils.matrices' is explicitly added 2025-03-28T22:54:42,917 to the `packages` configuration field. 2025-03-28T22:54:42,918 Alternatively, you can also rely on setuptools' discovery methods 2025-03-28T22:54:42,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-03-28T22:54:42,932 instead of `find_packages(...)`/`find:`). 2025-03-28T22:54:42,936 You can read more about "package discovery" on setuptools documentation page: 2025-03-28T22:54:42,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-03-28T22:54:42,989 If you don't want 'abutils.utils.matrices' to be distributed and are 2025-03-28T22:54:42,990 already explicitly excluding 'abutils.utils.matrices' via 2025-03-28T22:54:42,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-03-28T22:54:42,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-03-28T22:54:42,992 combination with a more fine grained `package-data` configuration. 2025-03-28T22:54:42,993 You can read more about "package data files" on setuptools documentation page: 2025-03-28T22:54:42,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-03-28T22:54:42,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-03-28T22:54:42,995 even if it does not contain any `.py` files. 2025-03-28T22:54:42,996 On the other hand, currently there is no concept of package data 2025-03-28T22:54:42,999 directory, all directories are treated like packages. 2025-03-28T22:54:42,999 ******************************************************************************** 2025-03-28T22:54:43,000 !! 2025-03-28T22:54:43,001 check.warn(importable) 2025-03-28T22:54:43,002 creating build/lib/abutils/binaries 2025-03-28T22:54:43,002 copying abutils/binaries/cdhit_darwin_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,003 copying abutils/binaries/cdhit_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,004 copying abutils/binaries/cdhit_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,004 copying abutils/binaries/fastp_darwin -> build/lib/abutils/binaries 2025-03-28T22:54:43,007 copying abutils/binaries/fastp_linux -> build/lib/abutils/binaries 2025-03-28T22:54:43,008 copying abutils/binaries/fasttree_darwin_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,008 copying abutils/binaries/fasttree_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,009 copying abutils/binaries/fasttree_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,009 copying abutils/binaries/minimap2_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,010 copying abutils/binaries/minimap2_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,011 copying abutils/binaries/mmseqs_darwin_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,011 copying abutils/binaries/mmseqs_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:43,544 copying abutils/binaries/mmseqs_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,545 copying abutils/binaries/muscle3_darwin -> build/lib/abutils/binaries 2025-03-28T22:54:44,554 copying abutils/binaries/muscle3_linux -> build/lib/abutils/binaries 2025-03-28T22:54:44,561 copying abutils/binaries/muscle_darwin_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,579 copying abutils/binaries/muscle_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,594 copying abutils/binaries/muscle_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,638 copying abutils/binaries/sickle_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,642 copying abutils/binaries/sickle_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,645 copying abutils/binaries/vsearch_darwin_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,655 copying abutils/binaries/vsearch_darwin_arm64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,665 copying abutils/binaries/vsearch_linux_amd64 -> build/lib/abutils/binaries 2025-03-28T22:54:44,699 creating build/lib/abutils/binaries/mafft_darwin 2025-03-28T22:54:44,701 copying abutils/binaries/mafft_darwin/mafft.bat -> build/lib/abutils/binaries/mafft_darwin 2025-03-28T22:54:44,705 creating build/lib/abutils/binaries/mafft_darwin/mafftdir/bin 2025-03-28T22:54:44,707 copying abutils/binaries/mafft_darwin/mafftdir/bin/mafft -> build/lib/abutils/binaries/mafft_darwin/mafftdir/bin 2025-03-28T22:54:44,712 creating build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:44,713 copying abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:44,739 copying abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:45,022 copying abutils/binaries/mafft_darwin/mafftdir/libexec/countlen -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:45,032 copying abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,078 copying abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,177 copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,207 copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,248 copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,281 copying abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,350 copying abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,375 copying abutils/binaries/mafft_darwin/mafftdir/libexec/filter -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,410 copying abutils/binaries/mafft_darwin/mafftdir/libexec/getlag -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,465 copying abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,472 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,498 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,501 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,544 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,548 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,552 copying abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,570 copying abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,630 copying abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,672 copying abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,694 copying abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,745 copying abutils/binaries/mafft_darwin/mafftdir/libexec/pairash -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,788 copying abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,828 copying abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,860 copying abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,882 copying abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,906 copying abutils/binaries/mafft_darwin/mafftdir/libexec/score -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,933 copying abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,937 copying abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:46,952 copying abutils/binaries/mafft_darwin/mafftdir/libexec/setcore -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,010 copying abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,042 copying abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,067 copying abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,115 copying abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,170 copying abutils/binaries/mafft_darwin/mafftdir/libexec/version -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:47,178 creating build/lib/abutils/binaries/mafft_linux 2025-03-28T22:54:47,179 copying abutils/binaries/mafft_linux/mafft.bat -> build/lib/abutils/binaries/mafft_linux 2025-03-28T22:54:47,183 creating build/lib/abutils/binaries/mafft_linux/mafftdir/bin 2025-03-28T22:54:47,185 copying abutils/binaries/mafft_linux/mafftdir/bin/mafft -> build/lib/abutils/binaries/mafft_linux/mafftdir/bin 2025-03-28T22:54:47,192 creating build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,194 copying abutils/binaries/mafft_linux/mafftdir/libexec/addsingle -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,241 copying abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,286 copying abutils/binaries/mafft_linux/mafftdir/libexec/countlen -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,319 copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,327 copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_client -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,391 copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,394 copying abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,418 copying abutils/binaries/mafft_linux/mafftdir/libexec/dndblast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,435 copying abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,451 copying abutils/binaries/mafft_linux/mafftdir/libexec/dndpre -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,467 copying abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,489 copying abutils/binaries/mafft_linux/mafftdir/libexec/f2cl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,505 copying abutils/binaries/mafft_linux/mafftdir/libexec/filter -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,561 copying abutils/binaries/mafft_linux/mafftdir/libexec/getlag -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,585 copying abutils/binaries/mafft_linux/mafftdir/libexec/hat3 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,586 copying abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,597 copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,615 copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,618 copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,638 copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,641 copying abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,644 copying abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,655 copying abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,678 copying abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,694 copying abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,711 copying abutils/binaries/mafft_linux/mafftdir/libexec/nodepair -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,733 copying abutils/binaries/mafft_linux/mafftdir/libexec/pairash -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,753 copying abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,783 copying abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,799 copying abutils/binaries/mafft_linux/mafftdir/libexec/replaceu -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,815 copying abutils/binaries/mafft_linux/mafftdir/libexec/restoreu -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,835 copying abutils/binaries/mafft_linux/mafftdir/libexec/score -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,852 copying abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,855 copying abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,867 copying abutils/binaries/mafft_linux/mafftdir/libexec/setcore -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,896 copying abutils/binaries/mafft_linux/mafftdir/libexec/setdirection -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,916 copying abutils/binaries/mafft_linux/mafftdir/libexec/sextet5 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,945 copying abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,972 copying abutils/binaries/mafft_linux/mafftdir/libexec/tbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:47,998 copying abutils/binaries/mafft_linux/mafftdir/libexec/version -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,009 creating build/lib/abutils/utils/matrices 2025-03-28T22:54:48,010 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2025-03-28T22:54:48,012 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2025-03-28T22:54:48,015 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2025-03-28T22:54:48,049 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-03-28T22:54:48,049 !! 2025-03-28T22:54:48,050 ******************************************************************************** 2025-03-28T22:54:48,051 Please avoid running ``setup.py`` directly. 2025-03-28T22:54:48,051 Instead, use pypa/build, pypa/installer or other 2025-03-28T22:54:48,052 standards-based tools. 2025-03-28T22:54:48,053 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-03-28T22:54:48,053 ******************************************************************************** 2025-03-28T22:54:48,054 !! 2025-03-28T22:54:48,055 self.initialize_options() 2025-03-28T22:54:48,076 installing to build/bdist.linux-armv7l/wheel 2025-03-28T22:54:48,077 running install 2025-03-28T22:54:48,100 running install_lib 2025-03-28T22:54:48,127 creating build/bdist.linux-armv7l/wheel 2025-03-28T22:54:48,130 creating build/bdist.linux-armv7l/wheel/abutils 2025-03-28T22:54:48,132 creating build/bdist.linux-armv7l/wheel/abutils/binaries 2025-03-28T22:54:48,133 copying build/lib/abutils/binaries/muscle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:48,150 copying build/lib/abutils/binaries/fastp_linux -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:48,312 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux 2025-03-28T22:54:48,313 copying build/lib/abutils/binaries/mafft_linux/mafft.bat -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux 2025-03-28T22:54:48,316 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir 2025-03-28T22:54:48,318 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,319 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,331 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,356 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,373 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,392 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,415 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,433 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,455 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,465 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,480 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,483 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,503 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,506 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,517 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,535 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,538 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,557 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,633 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,646 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,663 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/hat3 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,664 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,667 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,671 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,684 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,687 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,710 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,732 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,762 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,783 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,797 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,817 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,837 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,861 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,877 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,893 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,909 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,929 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,949 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,965 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,980 copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec 2025-03-28T22:54:48,996 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir/bin 2025-03-28T22:54:48,997 copying build/lib/abutils/binaries/mafft_linux/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/bin 2025-03-28T22:54:49,001 copying build/lib/abutils/binaries/minimap2_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,006 copying build/lib/abutils/binaries/minimap2_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,030 copying build/lib/abutils/binaries/fasttree_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,036 copying build/lib/abutils/binaries/vsearch_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,078 copying build/lib/abutils/binaries/muscle_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,119 copying build/lib/abutils/binaries/fasttree_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,127 copying build/lib/abutils/binaries/mmseqs_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,235 copying build/lib/abutils/binaries/vsearch_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,244 copying build/lib/abutils/binaries/cdhit_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,249 copying build/lib/abutils/binaries/sickle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,253 copying build/lib/abutils/binaries/muscle_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,269 copying build/lib/abutils/binaries/fasttree_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,277 copying build/lib/abutils/binaries/sickle_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,280 copying build/lib/abutils/binaries/muscle3_linux -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,289 copying build/lib/abutils/binaries/muscle3_darwin -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:49,299 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin 2025-03-28T22:54:49,301 copying build/lib/abutils/binaries/mafft_darwin/mafft.bat -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin 2025-03-28T22:54:49,303 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir 2025-03-28T22:54:49,305 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,307 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,316 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,345 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,361 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,384 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,410 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,424 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,454 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,459 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,474 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,500 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,505 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,509 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,526 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,528 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,554 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,891 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,899 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,916 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,920 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,924 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,927 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,941 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,957 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,983 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:49,998 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,007 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,039 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,067 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,096 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,110 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,126 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,142 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,170 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,195 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,212 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,231 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec 2025-03-28T22:54:50,250 creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir/bin 2025-03-28T22:54:50,252 copying build/lib/abutils/binaries/mafft_darwin/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/bin 2025-03-28T22:54:50,256 copying build/lib/abutils/binaries/cdhit_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:50,260 copying build/lib/abutils/binaries/mmseqs_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:50,832 copying build/lib/abutils/binaries/fastp_darwin -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:50,842 copying build/lib/abutils/binaries/vsearch_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:50,852 copying build/lib/abutils/binaries/cdhit_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:50,858 copying build/lib/abutils/binaries/mmseqs_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries 2025-03-28T22:54:52,766 creating build/bdist.linux-armv7l/wheel/abutils/plots 2025-03-28T22:54:52,767 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,770 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,771 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,773 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,776 creating build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2025-03-28T22:54:52,777 copying build/lib/abutils/plots/mixins/hue.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/mixins 2025-03-28T22:54:52,779 copying build/lib/abutils/plots/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/mixins 2025-03-28T22:54:52,780 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,783 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,785 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,788 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,792 creating build/bdist.linux-armv7l/wheel/abutils/plots/models 2025-03-28T22:54:52,794 copying build/lib/abutils/plots/models/data.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/models 2025-03-28T22:54:52,797 copying build/lib/abutils/plots/models/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/models 2025-03-28T22:54:52,799 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,802 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,804 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,806 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,808 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/./abutils/plots 2025-03-28T22:54:52,811 copying build/lib/abutils/pp.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,813 copying build/lib/abutils/cl.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,815 copying build/lib/abutils/bin.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,818 creating build/bdist.linux-armv7l/wheel/abutils/tools 2025-03-28T22:54:52,819 copying build/lib/abutils/tools/preprocessing.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,822 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,826 copying build/lib/abutils/tools/cloning.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,828 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,832 copying build/lib/abutils/tools/log.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,834 copying build/lib/abutils/tools/search.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,837 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,839 copying build/lib/abutils/tools/similarity.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,841 copying build/lib/abutils/tools/anarci.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,843 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,846 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/./abutils/tools 2025-03-28T22:54:52,850 creating build/bdist.linux-armv7l/wheel/abutils/utils 2025-03-28T22:54:52,851 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,854 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,857 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,858 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,860 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,863 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2025-03-28T22:54:52,864 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices 2025-03-28T22:54:52,866 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices 2025-03-28T22:54:52,868 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices 2025-03-28T22:54:52,871 copying build/lib/abutils/utils/path.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,873 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,875 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,878 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,879 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,881 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,883 copying build/lib/abutils/utils/click.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,885 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,888 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,893 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,895 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,898 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,900 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,902 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,905 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,908 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/utils 2025-03-28T22:54:52,911 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,913 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,915 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,917 creating build/bdist.linux-armv7l/wheel/abutils/core 2025-03-28T22:54:52,919 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/./abutils/core 2025-03-28T22:54:52,923 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/./abutils/core 2025-03-28T22:54:52,926 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/./abutils/core 2025-03-28T22:54:52,929 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/core 2025-03-28T22:54:52,931 creating build/bdist.linux-armv7l/wheel/abutils/preprocess 2025-03-28T22:54:52,932 copying build/lib/abutils/preprocess/preprocess.py -> build/bdist.linux-armv7l/wheel/./abutils/preprocess 2025-03-28T22:54:52,935 copying build/lib/abutils/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/preprocess 2025-03-28T22:54:52,937 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,940 copying build/lib/abutils/log.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,943 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils 2025-03-28T22:54:52,945 creating build/bdist.linux-armv7l/wheel/abutils/tests 2025-03-28T22:54:52,946 copying build/lib/abutils/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,949 copying build/lib/abutils/tests/test_color.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,951 copying build/lib/abutils/tests/test_cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,953 copying build/lib/abutils/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,956 copying build/lib/abutils/tests/test_phylo.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,958 copying build/lib/abutils/tests/test_clonify.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,961 copying build/lib/abutils/tests/test_preprocessing.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,963 copying build/lib/abutils/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,966 copying build/lib/abutils/tests/test_utilities.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,968 copying build/lib/abutils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,970 copying build/lib/abutils/tests/test_cloning.py -> build/bdist.linux-armv7l/wheel/./abutils/tests 2025-03-28T22:54:52,971 running install_egg_info 2025-03-28T22:54:53,005 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/./abutils-0.5.1-py3.11.egg-info 2025-03-28T22:54:53,016 running install_scripts 2025-03-28T22:54:53,037 creating build/bdist.linux-armv7l/wheel/abutils-0.5.1.dist-info/WHEEL 2025-03-28T22:54:53,040 creating '/tmp/pip-wheel-mzqop0q2/abutils-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-03-28T22:54:53,042 adding 'abutils/__init__.py' 2025-03-28T22:54:53,044 adding 'abutils/bin.py' 2025-03-28T22:54:53,045 adding 'abutils/cl.py' 2025-03-28T22:54:53,049 adding 'abutils/io.py' 2025-03-28T22:54:53,051 adding 'abutils/log.py' 2025-03-28T22:54:53,052 adding 'abutils/pl.py' 2025-03-28T22:54:53,054 adding 'abutils/pp.py' 2025-03-28T22:54:53,055 adding 'abutils/tl.py' 2025-03-28T22:54:53,057 adding 'abutils/version.py' 2025-03-28T22:54:53,084 adding 'abutils/binaries/cdhit_darwin_amd64' 2025-03-28T22:54:53,110 adding 'abutils/binaries/cdhit_darwin_arm64' 2025-03-28T22:54:53,133 adding 'abutils/binaries/cdhit_linux_amd64' 2025-03-28T22:54:53,210 adding 'abutils/binaries/fastp_darwin' 2025-03-28T22:54:54,879 adding 'abutils/binaries/fastp_linux' 2025-03-28T22:54:54,986 adding 'abutils/binaries/fasttree_darwin_amd64' 2025-03-28T22:54:55,044 adding 'abutils/binaries/fasttree_darwin_arm64' 2025-03-28T22:54:55,113 adding 'abutils/binaries/fasttree_linux_amd64' 2025-03-28T22:54:55,143 adding 'abutils/binaries/minimap2_darwin_arm64' 2025-03-28T22:54:55,318 adding 'abutils/binaries/minimap2_linux_amd64' 2025-03-28T22:54:56,422 adding 'abutils/binaries/mmseqs_darwin_amd64' 2025-03-28T22:55:05,955 adding 'abutils/binaries/mmseqs_darwin_arm64' 2025-03-28T22:55:18,666 adding 'abutils/binaries/mmseqs_linux_amd64' 2025-03-28T22:55:19,204 adding 'abutils/binaries/muscle3_darwin' 2025-03-28T22:55:19,267 adding 'abutils/binaries/muscle3_linux' 2025-03-28T22:55:19,443 adding 'abutils/binaries/muscle_darwin_amd64' 2025-03-28T22:55:19,596 adding 'abutils/binaries/muscle_darwin_arm64' 2025-03-28T22:55:20,105 adding 'abutils/binaries/muscle_linux_amd64' 2025-03-28T22:55:20,127 adding 'abutils/binaries/sickle_darwin_arm64' 2025-03-28T22:55:20,133 adding 'abutils/binaries/sickle_linux_amd64' 2025-03-28T22:55:20,206 adding 'abutils/binaries/vsearch_darwin_amd64' 2025-03-28T22:55:20,271 adding 'abutils/binaries/vsearch_darwin_arm64' 2025-03-28T22:55:20,583 adding 'abutils/binaries/vsearch_linux_amd64' 2025-03-28T22:55:20,598 adding 'abutils/binaries/mafft_darwin/mafft.bat' 2025-03-28T22:55:20,609 adding 'abutils/binaries/mafft_darwin/mafftdir/bin/mafft' 2025-03-28T22:55:20,912 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle' 2025-03-28T22:55:21,066 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap' 2025-03-28T22:55:21,113 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/countlen' 2025-03-28T22:55:23,405 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client' 2025-03-28T22:55:23,854 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast' 2025-03-28T22:55:24,015 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast' 2025-03-28T22:55:24,173 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7' 2025-03-28T22:55:24,322 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre' 2025-03-28T22:55:24,636 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr' 2025-03-28T22:55:24,711 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl' 2025-03-28T22:55:24,836 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/filter' 2025-03-28T22:55:25,116 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/getlag' 2025-03-28T22:55:25,131 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext' 2025-03-28T22:55:25,284 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance' 2025-03-28T22:55:25,291 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1' 2025-03-28T22:55:25,566 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile' 2025-03-28T22:55:25,577 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1' 2025-03-28T22:55:25,579 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl' 2025-03-28T22:55:25,585 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex' 2025-03-28T22:55:25,873 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist' 2025-03-28T22:55:26,028 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap' 2025-03-28T22:55:26,191 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s' 2025-03-28T22:55:26,503 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair' 2025-03-28T22:55:26,796 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/pairash' 2025-03-28T22:55:27,098 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign' 2025-03-28T22:55:27,231 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq' 2025-03-28T22:55:27,358 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu' 2025-03-28T22:55:27,488 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu' 2025-03-28T22:55:27,638 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/score' 2025-03-28T22:55:27,642 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl' 2025-03-28T22:55:27,684 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable' 2025-03-28T22:55:27,961 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/setcore' 2025-03-28T22:55:28,093 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection' 2025-03-28T22:55:28,249 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5' 2025-03-28T22:55:28,607 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast' 2025-03-28T22:55:29,191 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast' 2025-03-28T22:55:29,207 adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/version' 2025-03-28T22:55:29,211 adding 'abutils/binaries/mafft_linux/mafft.bat' 2025-03-28T22:55:29,222 adding 'abutils/binaries/mafft_linux/mafftdir/bin/mafft' 2025-03-28T22:55:29,477 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/addsingle' 2025-03-28T22:55:29,657 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap' 2025-03-28T22:55:29,779 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/countlen' 2025-03-28T22:55:29,788 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments' 2025-03-28T22:55:30,572 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_client' 2025-03-28T22:55:30,600 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa' 2025-03-28T22:55:30,858 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast' 2025-03-28T22:55:31,040 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndblast' 2025-03-28T22:55:31,219 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7' 2025-03-28T22:55:31,395 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndpre' 2025-03-28T22:55:31,647 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr' 2025-03-28T22:55:31,787 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/f2cl' 2025-03-28T22:55:31,954 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/filter' 2025-03-28T22:55:32,191 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/getlag' 2025-03-28T22:55:32,200 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/hat3' 2025-03-28T22:55:32,302 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext' 2025-03-28T22:55:32,478 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance' 2025-03-28T22:55:32,485 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1' 2025-03-28T22:55:32,717 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile' 2025-03-28T22:55:32,727 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1' 2025-03-28T22:55:32,729 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl' 2025-03-28T22:55:32,834 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex' 2025-03-28T22:55:33,070 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist' 2025-03-28T22:55:33,250 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap' 2025-03-28T22:55:33,438 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s' 2025-03-28T22:55:33,688 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/nodepair' 2025-03-28T22:55:33,929 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/pairash' 2025-03-28T22:55:34,175 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign' 2025-03-28T22:55:34,344 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq' 2025-03-28T22:55:34,511 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/replaceu' 2025-03-28T22:55:34,678 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/restoreu' 2025-03-28T22:55:34,854 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/score' 2025-03-28T22:55:34,862 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl' 2025-03-28T22:55:34,978 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable' 2025-03-28T22:55:35,213 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/setcore' 2025-03-28T22:55:35,383 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/setdirection' 2025-03-28T22:55:35,561 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/sextet5' 2025-03-28T22:55:35,803 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast' 2025-03-28T22:55:36,067 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/tbfast' 2025-03-28T22:55:36,176 adding 'abutils/binaries/mafft_linux/mafftdir/libexec/version' 2025-03-28T22:55:36,181 adding 'abutils/core/__init__.py' 2025-03-28T22:55:36,187 adding 'abutils/core/lineage.py' 2025-03-28T22:55:36,193 adding 'abutils/core/pair.py' 2025-03-28T22:55:36,199 adding 'abutils/core/sequence.py' 2025-03-28T22:55:36,202 adding 'abutils/plots/__init__.py' 2025-03-28T22:55:36,204 adding 'abutils/plots/bar.py' 2025-03-28T22:55:36,205 adding 'abutils/plots/base.py' 2025-03-28T22:55:36,207 adding 'abutils/plots/data.py' 2025-03-28T22:55:36,210 adding 'abutils/plots/donut.py' 2025-03-28T22:55:36,213 adding 'abutils/plots/heatmap.py' 2025-03-28T22:55:36,218 adding 'abutils/plots/kde.py' 2025-03-28T22:55:36,220 adding 'abutils/plots/lineage.py' 2025-03-28T22:55:36,222 adding 'abutils/plots/ridge.py' 2025-03-28T22:55:36,224 adding 'abutils/plots/ring.py' 2025-03-28T22:55:36,227 adding 'abutils/plots/scatter.py' 2025-03-28T22:55:36,229 adding 'abutils/plots/summary.py' 2025-03-28T22:55:36,230 adding 'abutils/plots/utils.py' 2025-03-28T22:55:36,232 adding 'abutils/plots/mixins/__init__.py' 2025-03-28T22:55:36,233 adding 'abutils/plots/mixins/hue.py' 2025-03-28T22:55:36,235 adding 'abutils/plots/models/__init__.py' 2025-03-28T22:55:36,238 adding 'abutils/plots/models/data.py' 2025-03-28T22:55:36,240 adding 'abutils/preprocess/__init__.py' 2025-03-28T22:55:36,242 adding 'abutils/preprocess/preprocess.py' 2025-03-28T22:55:36,244 adding 'abutils/tests/__init__.py' 2025-03-28T22:55:36,246 adding 'abutils/tests/test_alignment.py' 2025-03-28T22:55:36,248 adding 'abutils/tests/test_clonify.py' 2025-03-28T22:55:36,249 adding 'abutils/tests/test_cloning.py' 2025-03-28T22:55:36,250 adding 'abutils/tests/test_cluster.py' 2025-03-28T22:55:36,252 adding 'abutils/tests/test_color.py' 2025-03-28T22:55:36,254 adding 'abutils/tests/test_pair.py' 2025-03-28T22:55:36,256 adding 'abutils/tests/test_phylo.py' 2025-03-28T22:55:36,258 adding 'abutils/tests/test_preprocessing.py' 2025-03-28T22:55:36,260 adding 'abutils/tests/test_sequence.py' 2025-03-28T22:55:36,261 adding 'abutils/tests/test_utilities.py' 2025-03-28T22:55:36,263 adding 'abutils/tools/__init__.py' 2025-03-28T22:55:36,269 adding 'abutils/tools/alignment.py' 2025-03-28T22:55:36,271 adding 'abutils/tools/anarci.py' 2025-03-28T22:55:36,276 adding 'abutils/tools/clonify.py' 2025-03-28T22:55:36,278 adding 'abutils/tools/cloning.py' 2025-03-28T22:55:36,283 adding 'abutils/tools/cluster.py' 2025-03-28T22:55:36,285 adding 'abutils/tools/log.py' 2025-03-28T22:55:36,289 adding 'abutils/tools/phylo.py' 2025-03-28T22:55:36,293 adding 'abutils/tools/preprocessing.py' 2025-03-28T22:55:36,295 adding 'abutils/tools/search.py' 2025-03-28T22:55:36,298 adding 'abutils/tools/similarity.py' 2025-03-28T22:55:36,300 adding 'abutils/utils/__init__.py' 2025-03-28T22:55:36,307 adding 'abutils/utils/alignment.py' 2025-03-28T22:55:36,309 adding 'abutils/utils/circos.py' 2025-03-28T22:55:36,311 adding 'abutils/utils/click.py' 2025-03-28T22:55:36,315 adding 'abutils/utils/cluster.py' 2025-03-28T22:55:36,316 adding 'abutils/utils/codons.py' 2025-03-28T22:55:36,319 adding 'abutils/utils/color.py' 2025-03-28T22:55:36,320 adding 'abutils/utils/convert.py' 2025-03-28T22:55:36,322 adding 'abutils/utils/database.py' 2025-03-28T22:55:36,323 adding 'abutils/utils/decorators.py' 2025-03-28T22:55:36,325 adding 'abutils/utils/germlines.py' 2025-03-28T22:55:36,327 adding 'abutils/utils/jobs.py' 2025-03-28T22:55:36,328 adding 'abutils/utils/log.py' 2025-03-28T22:55:36,331 adding 'abutils/utils/mongodb.py' 2025-03-28T22:55:36,333 adding 'abutils/utils/path.py' 2025-03-28T22:55:36,337 adding 'abutils/utils/phylogeny.py' 2025-03-28T22:55:36,338 adding 'abutils/utils/progbar.py' 2025-03-28T22:55:36,340 adding 'abutils/utils/s3.py' 2025-03-28T22:55:36,342 adding 'abutils/utils/seqio.py' 2025-03-28T22:55:36,344 adding 'abutils/utils/ssh_tunnel.py' 2025-03-28T22:55:36,345 adding 'abutils/utils/utilities.py' 2025-03-28T22:55:36,347 adding 'abutils/utils/matrices/blosum62' 2025-03-28T22:55:36,348 adding 'abutils/utils/matrices/match1mismatch0' 2025-03-28T22:55:36,350 adding 'abutils/utils/matrices/match3mismatch2' 2025-03-28T22:55:36,352 adding 'abutils-0.5.1.dist-info/LICENSE' 2025-03-28T22:55:36,353 adding 'abutils-0.5.1.dist-info/METADATA' 2025-03-28T22:55:36,354 adding 'abutils-0.5.1.dist-info/WHEEL' 2025-03-28T22:55:36,355 adding 'abutils-0.5.1.dist-info/top_level.txt' 2025-03-28T22:55:36,358 adding 'abutils-0.5.1.dist-info/RECORD' 2025-03-28T22:55:36,539 removing build/bdist.linux-armv7l/wheel 2025-03-28T22:55:36,786 Building wheel for abutils (setup.py): finished with status 'done' 2025-03-28T22:55:38,970 Created wheel for abutils: filename=abutils-0.5.1-py3-none-any.whl size=86653689 sha256=f9c9d2f1f0ee769ed71d0a7d37b21b6314790ae5dc9657bd6887b8bbd711d901 2025-03-28T22:55:38,971 Stored in directory: /tmp/pip-ephem-wheel-cache-slpmd2o9/wheels/d8/d1/41/0638799faa7ddf3f0495cc3807473ccebeb7b06440211e410f 2025-03-28T22:55:39,014 Successfully built abutils 2025-03-28T22:55:41,414 Removed build tracker: '/tmp/pip-build-tracker-_8sobo4i'