2025-04-01T00:15:02,967 Disabling truststore because Python version isn't 3.10+ 2025-04-01T00:15:03,467 Created temporary directory: /tmp/pip-build-tracker-sutuoao9 2025-04-01T00:15:03,468 Initialized build tracking at /tmp/pip-build-tracker-sutuoao9 2025-04-01T00:15:03,468 Created build tracker: /tmp/pip-build-tracker-sutuoao9 2025-04-01T00:15:03,468 Entered build tracker: /tmp/pip-build-tracker-sutuoao9 2025-04-01T00:15:03,469 Created temporary directory: /tmp/pip-wheel-l4xa3wr2 2025-04-01T00:15:03,474 Created temporary directory: /tmp/pip-ephem-wheel-cache-wdsf8l0x 2025-04-01T00:15:03,517 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-04-01T00:15:03,520 2 location(s) to search for versions of nanogo-basecaller: 2025-04-01T00:15:03,520 * https://pypi.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,520 * https://www.piwheels.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,521 Fetching project page and analyzing links: https://pypi.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,521 Getting page https://pypi.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,523 Found index url https://pypi.org/simple/ 2025-04-01T00:15:03,621 Fetched page https://pypi.org/simple/nanogo-basecaller/ as application/vnd.pypi.simple.v1+json 2025-04-01T00:15:03,624 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/4a/19/6ff6747e045bd784c36441fd6ab3f825c31e0596e544e221561c2c244fce/nanogo_basecaller-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,625 Found link https://files.pythonhosted.org/packages/d6/92/aff37f9a63ccbd620df2113482b0ccc76b009ad302def7b71a7802780b08/nanogo_basecaller-0.1.0.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.0 2025-04-01T00:15:03,626 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/01/81/0f745a94cd017d363692153ae0e961a969fbb019cc7c83ae2b6666e1f128/nanogo_basecaller-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,626 Found link https://files.pythonhosted.org/packages/38/fc/49d82d447564fc364a1668e860b6530455ddd19aa0849e85ae81ca1f764b/nanogo_basecaller-0.1.1.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.1 2025-04-01T00:15:03,626 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/14/f0/85fe195a5616e03486acceb548b17989202cd00d221a993ff78442e49b5a/nanogo_basecaller-0.1.2-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,627 Found link https://files.pythonhosted.org/packages/6c/dc/169836d08f0cbf6c691b80a5d9b72a9967e36c1422c7a542523dc7e54833/nanogo_basecaller-0.1.2.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.2 2025-04-01T00:15:03,627 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/0d/33/3ee910fe9d4a9c054d0a9cb3d16c7d9305741c039f1909b5c3a015a2fc5a/nanogo_basecaller-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,628 Found link https://files.pythonhosted.org/packages/f3/ef/11b09e2be36096e248e225b2475b62572df7453dd4a5654e3ea3991f608b/nanogo_basecaller-0.1.3.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.3 2025-04-01T00:15:03,628 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/b9/e4/8c11cbe4ba6743a15a0a64800b80249aaf2c22a8a32f3b7c357f247ba25c/nanogo_basecaller-0.1.4-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,628 Found link https://files.pythonhosted.org/packages/18/05/b89149cb3292d77deee476abd4b067f597c58d375ce906e20d4e8345bb23/nanogo_basecaller-0.1.4.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.4 2025-04-01T00:15:03,629 Skipping link: No binaries permitted for nanogo-basecaller: https://files.pythonhosted.org/packages/2f/c6/33a479af911facfe37dee4cd3b1633b727512d077406433e55a494713e0d/nanogo_basecaller-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11) 2025-04-01T00:15:03,629 Found link https://files.pythonhosted.org/packages/e2/1e/9d72652ccb88953c61a4bf4c5742a41ba553f3166d393660817ed795e978/nanogo_basecaller-0.1.5.tar.gz (from https://pypi.org/simple/nanogo-basecaller/) (requires-python:<=3.11), version: 0.1.5 2025-04-01T00:15:03,630 Fetching project page and analyzing links: https://www.piwheels.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,630 Getting page https://www.piwheels.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,631 Found index url https://www.piwheels.org/simple/ 2025-04-01T00:15:03,676 Fetched page https://www.piwheels.org/simple/nanogo-basecaller/ as text/html 2025-04-01T00:15:03,677 Skipping link: not a file: https://www.piwheels.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,677 Skipping link: not a file: https://pypi.org/simple/nanogo-basecaller/ 2025-04-01T00:15:03,694 Given no hashes to check 1 links for project 'nanogo-basecaller': discarding no candidates 2025-04-01T00:15:03,695 Collecting nanogo-basecaller==0.1.5 2025-04-01T00:15:03,698 Created temporary directory: /tmp/pip-unpack-zojekccc 2025-04-01T00:15:03,792 Downloading nanogo_basecaller-0.1.5.tar.gz (80 kB) 2025-04-01T00:15:03,921 Added nanogo-basecaller==0.1.5 from https://files.pythonhosted.org/packages/e2/1e/9d72652ccb88953c61a4bf4c5742a41ba553f3166d393660817ed795e978/nanogo_basecaller-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-sutuoao9' 2025-04-01T00:15:03,924 Running setup.py (path:/tmp/pip-wheel-l4xa3wr2/nanogo-basecaller_a6eee376e90042e7a7391d47af17a8ea/setup.py) egg_info for package nanogo-basecaller 2025-04-01T00:15:03,925 Created temporary directory: /tmp/pip-pip-egg-info-xuxof35i 2025-04-01T00:15:03,925 Preparing metadata (setup.py): started 2025-04-01T00:15:03,926 Running command python setup.py egg_info 2025-04-01T00:15:05,094 running egg_info 2025-04-01T00:15:05,122 creating /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info 2025-04-01T00:15:05,123 writing /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/PKG-INFO 2025-04-01T00:15:05,129 writing dependency_links to /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/dependency_links.txt 2025-04-01T00:15:05,131 writing entry points to /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/entry_points.txt 2025-04-01T00:15:05,134 writing requirements to /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/requires.txt 2025-04-01T00:15:05,135 writing top-level names to /tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/top_level.txt 2025-04-01T00:15:05,136 writing manifest file '/tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/SOURCES.txt' 2025-04-01T00:15:05,233 reading manifest file '/tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/SOURCES.txt' 2025-04-01T00:15:05,235 adding license file 'LICENSE' 2025-04-01T00:15:05,235 adding license file 'AUTHORS.md' 2025-04-01T00:15:05,239 writing manifest file '/tmp/pip-pip-egg-info-xuxof35i/nanogo_basecaller.egg-info/SOURCES.txt' 2025-04-01T00:15:05,331 Preparing metadata (setup.py): finished with status 'done' 2025-04-01T00:15:05,339 Source in /tmp/pip-wheel-l4xa3wr2/nanogo-basecaller_a6eee376e90042e7a7391d47af17a8ea has version 0.1.5, which satisfies requirement nanogo-basecaller==0.1.5 from https://files.pythonhosted.org/packages/e2/1e/9d72652ccb88953c61a4bf4c5742a41ba553f3166d393660817ed795e978/nanogo_basecaller-0.1.5.tar.gz 2025-04-01T00:15:05,339 Removed nanogo-basecaller==0.1.5 from https://files.pythonhosted.org/packages/e2/1e/9d72652ccb88953c61a4bf4c5742a41ba553f3166d393660817ed795e978/nanogo_basecaller-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-sutuoao9' 2025-04-01T00:15:05,370 Created temporary directory: /tmp/pip-unpack-tmzn370w 2025-04-01T00:15:05,371 Created temporary directory: /tmp/pip-unpack-1bkrq7_j 2025-04-01T00:15:05,371 Building wheels for collected packages: nanogo-basecaller 2025-04-01T00:15:05,375 Created temporary directory: /tmp/pip-wheel-ozrckm1w 2025-04-01T00:15:05,375 Building wheel for nanogo-basecaller (setup.py): started 2025-04-01T00:15:05,376 Destination directory: /tmp/pip-wheel-ozrckm1w 2025-04-01T00:15:05,376 Running command python setup.py bdist_wheel 2025-04-01T00:15:06,431 running bdist_wheel 2025-04-01T00:15:06,565 running build 2025-04-01T00:15:06,566 running build_py 2025-04-01T00:15:06,596 creating build/lib/nanogo_basecaller 2025-04-01T00:15:06,598 copying src/nanogo_basecaller/data_indexer.py -> build/lib/nanogo_basecaller 2025-04-01T00:15:06,601 copying src/nanogo_basecaller/cli.py -> build/lib/nanogo_basecaller 2025-04-01T00:15:06,603 copying src/nanogo_basecaller/__init__.py -> build/lib/nanogo_basecaller 2025-04-01T00:15:06,605 copying src/nanogo_basecaller/dorado_installer.py -> build/lib/nanogo_basecaller 2025-04-01T00:15:06,608 creating build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,609 copying src/nanogo_basecaller/utils/id_extraction.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,611 copying src/nanogo_basecaller/utils/__init__.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,613 copying src/nanogo_basecaller/utils/cli_select.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,616 copying src/nanogo_basecaller/utils/file_parser.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,618 copying src/nanogo_basecaller/utils/io_selection.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,620 copying src/nanogo_basecaller/utils/file_finder.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,622 copying src/nanogo_basecaller/utils/path_translator.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,624 copying src/nanogo_basecaller/utils/paths.py -> build/lib/nanogo_basecaller/utils 2025-04-01T00:15:06,627 creating build/lib/nanogo_basecaller/workflows 2025-04-01T00:15:06,629 copying src/nanogo_basecaller/workflows/basecalling.py -> build/lib/nanogo_basecaller/workflows 2025-04-01T00:15:06,631 copying src/nanogo_basecaller/workflows/__init__.py -> build/lib/nanogo_basecaller/workflows 2025-04-01T00:15:06,633 creating build/lib/nanogo_basecaller/tools 2025-04-01T00:15:06,634 copying src/nanogo_basecaller/tools/__init__.py -> build/lib/nanogo_basecaller/tools 2025-04-01T00:15:06,637 creating build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,638 copying src/nanogo_basecaller/core/slurm.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,640 copying src/nanogo_basecaller/core/__init__.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,642 copying src/nanogo_basecaller/core/resource.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,645 copying src/nanogo_basecaller/core/parallel.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,647 copying src/nanogo_basecaller/core/environment.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,649 copying src/nanogo_basecaller/core/tool.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,651 copying src/nanogo_basecaller/core/command.py -> build/lib/nanogo_basecaller/core 2025-04-01T00:15:06,654 creating build/lib/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:06,655 copying src/nanogo_basecaller/utils/sequencing/models.py -> build/lib/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:06,658 copying src/nanogo_basecaller/utils/sequencing/__init__.py -> build/lib/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:06,659 copying src/nanogo_basecaller/utils/sequencing/extractors.py -> build/lib/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:06,662 copying src/nanogo_basecaller/utils/sequencing/metadata.py -> build/lib/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:06,664 creating build/lib/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:06,665 copying src/nanogo_basecaller/tools/basecaller/samples_sheet.py -> build/lib/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:06,668 copying src/nanogo_basecaller/tools/basecaller/__init__.py -> build/lib/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:06,669 copying src/nanogo_basecaller/tools/basecaller/dorado.py -> build/lib/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:06,673 creating build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,674 copying src/nanogo_basecaller/tools/versions/env_manager.py -> build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,676 copying src/nanogo_basecaller/tools/versions/__init__.py -> build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,678 copying src/nanogo_basecaller/tools/versions/exceptions.py -> build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,680 copying src/nanogo_basecaller/tools/versions/version_checker.py -> build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,682 copying src/nanogo_basecaller/tools/versions/tool_version_parser.py -> build/lib/nanogo_basecaller/tools/versions 2025-04-01T00:15:06,689 copying src/nanogo_basecaller/tools/basecaller/custom.html.j2 -> build/lib/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:06,723 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-04-01T00:15:06,723 !! 2025-04-01T00:15:06,723 ******************************************************************************** 2025-04-01T00:15:06,724 Please avoid running ``setup.py`` directly. 2025-04-01T00:15:06,724 Instead, use pypa/build, pypa/installer or other 2025-04-01T00:15:06,724 standards-based tools. 2025-04-01T00:15:06,724 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-04-01T00:15:06,724 ******************************************************************************** 2025-04-01T00:15:06,725 !! 2025-04-01T00:15:06,725 self.initialize_options() 2025-04-01T00:15:06,750 installing to build/bdist.linux-armv7l/wheel 2025-04-01T00:15:06,750 running install 2025-04-01T00:15:06,776 running install_lib 2025-04-01T00:15:07,022 creating build/bdist.linux-armv7l/wheel 2025-04-01T00:15:07,024 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller 2025-04-01T00:15:07,026 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/utils 2025-04-01T00:15:07,027 copying build/lib/nanogo_basecaller/utils/id_extraction.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,029 copying build/lib/nanogo_basecaller/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,031 copying build/lib/nanogo_basecaller/utils/cli_select.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,034 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/utils/sequencing 2025-04-01T00:15:07,036 copying build/lib/nanogo_basecaller/utils/sequencing/models.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils/sequencing 2025-04-01T00:15:07,038 copying build/lib/nanogo_basecaller/utils/sequencing/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils/sequencing 2025-04-01T00:15:07,040 copying build/lib/nanogo_basecaller/utils/sequencing/extractors.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils/sequencing 2025-04-01T00:15:07,042 copying build/lib/nanogo_basecaller/utils/sequencing/metadata.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils/sequencing 2025-04-01T00:15:07,044 copying build/lib/nanogo_basecaller/utils/file_parser.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,047 copying build/lib/nanogo_basecaller/utils/io_selection.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,050 copying build/lib/nanogo_basecaller/utils/file_finder.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,052 copying build/lib/nanogo_basecaller/utils/path_translator.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,054 copying build/lib/nanogo_basecaller/utils/paths.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/utils 2025-04-01T00:15:07,056 copying build/lib/nanogo_basecaller/data_indexer.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller 2025-04-01T00:15:07,059 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/workflows 2025-04-01T00:15:07,061 copying build/lib/nanogo_basecaller/workflows/basecalling.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/workflows 2025-04-01T00:15:07,063 copying build/lib/nanogo_basecaller/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/workflows 2025-04-01T00:15:07,066 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/tools 2025-04-01T00:15:07,067 copying build/lib/nanogo_basecaller/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools 2025-04-01T00:15:07,071 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/tools/basecaller 2025-04-01T00:15:07,072 copying build/lib/nanogo_basecaller/tools/basecaller/samples_sheet.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/basecaller 2025-04-01T00:15:07,075 copying build/lib/nanogo_basecaller/tools/basecaller/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/basecaller 2025-04-01T00:15:07,076 copying build/lib/nanogo_basecaller/tools/basecaller/custom.html.j2 -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/basecaller 2025-04-01T00:15:07,079 copying build/lib/nanogo_basecaller/tools/basecaller/dorado.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/basecaller 2025-04-01T00:15:07,083 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/tools/versions 2025-04-01T00:15:07,084 copying build/lib/nanogo_basecaller/tools/versions/env_manager.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/versions 2025-04-01T00:15:07,086 copying build/lib/nanogo_basecaller/tools/versions/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/versions 2025-04-01T00:15:07,088 copying build/lib/nanogo_basecaller/tools/versions/exceptions.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/versions 2025-04-01T00:15:07,090 copying build/lib/nanogo_basecaller/tools/versions/version_checker.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/versions 2025-04-01T00:15:07,092 copying build/lib/nanogo_basecaller/tools/versions/tool_version_parser.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/tools/versions 2025-04-01T00:15:07,094 copying build/lib/nanogo_basecaller/cli.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller 2025-04-01T00:15:07,097 copying build/lib/nanogo_basecaller/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller 2025-04-01T00:15:07,100 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller/core 2025-04-01T00:15:07,101 copying build/lib/nanogo_basecaller/core/slurm.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,104 copying build/lib/nanogo_basecaller/core/__init__.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,106 copying build/lib/nanogo_basecaller/core/resource.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,108 copying build/lib/nanogo_basecaller/core/parallel.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,110 copying build/lib/nanogo_basecaller/core/environment.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,112 copying build/lib/nanogo_basecaller/core/tool.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,114 copying build/lib/nanogo_basecaller/core/command.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller/core 2025-04-01T00:15:07,117 copying build/lib/nanogo_basecaller/dorado_installer.py -> build/bdist.linux-armv7l/wheel/./nanogo_basecaller 2025-04-01T00:15:07,119 running install_egg_info 2025-04-01T00:15:07,153 running egg_info 2025-04-01T00:15:07,181 writing src/nanogo_basecaller.egg-info/PKG-INFO 2025-04-01T00:15:07,187 writing dependency_links to src/nanogo_basecaller.egg-info/dependency_links.txt 2025-04-01T00:15:07,188 writing entry points to src/nanogo_basecaller.egg-info/entry_points.txt 2025-04-01T00:15:07,191 writing requirements to src/nanogo_basecaller.egg-info/requires.txt 2025-04-01T00:15:07,193 writing top-level names to src/nanogo_basecaller.egg-info/top_level.txt 2025-04-01T00:15:07,230 reading manifest file 'src/nanogo_basecaller.egg-info/SOURCES.txt' 2025-04-01T00:15:07,234 adding license file 'LICENSE' 2025-04-01T00:15:07,234 adding license file 'AUTHORS.md' 2025-04-01T00:15:07,240 writing manifest file 'src/nanogo_basecaller.egg-info/SOURCES.txt' 2025-04-01T00:15:07,241 Copying src/nanogo_basecaller.egg-info to build/bdist.linux-armv7l/wheel/./nanogo_basecaller-0.1.5-py3.9.egg-info 2025-04-01T00:15:07,252 running install_scripts 2025-04-01T00:15:07,303 creating build/bdist.linux-armv7l/wheel/nanogo_basecaller-0.1.5.dist-info/WHEEL 2025-04-01T00:15:07,305 creating '/tmp/pip-wheel-ozrckm1w/nanogo_basecaller-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-04-01T00:15:07,308 adding 'nanogo_basecaller/__init__.py' 2025-04-01T00:15:07,311 adding 'nanogo_basecaller/cli.py' 2025-04-01T00:15:07,314 adding 'nanogo_basecaller/data_indexer.py' 2025-04-01T00:15:07,316 adding 'nanogo_basecaller/dorado_installer.py' 2025-04-01T00:15:07,318 adding 'nanogo_basecaller/core/__init__.py' 2025-04-01T00:15:07,320 adding 'nanogo_basecaller/core/command.py' 2025-04-01T00:15:07,322 adding 'nanogo_basecaller/core/environment.py' 2025-04-01T00:15:07,324 adding 'nanogo_basecaller/core/parallel.py' 2025-04-01T00:15:07,326 adding 'nanogo_basecaller/core/resource.py' 2025-04-01T00:15:07,328 adding 'nanogo_basecaller/core/slurm.py' 2025-04-01T00:15:07,330 adding 'nanogo_basecaller/core/tool.py' 2025-04-01T00:15:07,332 adding 'nanogo_basecaller/tools/__init__.py' 2025-04-01T00:15:07,334 adding 'nanogo_basecaller/tools/basecaller/__init__.py' 2025-04-01T00:15:07,336 adding 'nanogo_basecaller/tools/basecaller/custom.html.j2' 2025-04-01T00:15:07,340 adding 'nanogo_basecaller/tools/basecaller/dorado.py' 2025-04-01T00:15:07,342 adding 'nanogo_basecaller/tools/basecaller/samples_sheet.py' 2025-04-01T00:15:07,344 adding 'nanogo_basecaller/tools/versions/__init__.py' 2025-04-01T00:15:07,346 adding 'nanogo_basecaller/tools/versions/env_manager.py' 2025-04-01T00:15:07,347 adding 'nanogo_basecaller/tools/versions/exceptions.py' 2025-04-01T00:15:07,349 adding 'nanogo_basecaller/tools/versions/tool_version_parser.py' 2025-04-01T00:15:07,352 adding 'nanogo_basecaller/tools/versions/version_checker.py' 2025-04-01T00:15:07,354 adding 'nanogo_basecaller/utils/__init__.py' 2025-04-01T00:15:07,356 adding 'nanogo_basecaller/utils/cli_select.py' 2025-04-01T00:15:07,358 adding 'nanogo_basecaller/utils/file_finder.py' 2025-04-01T00:15:07,360 adding 'nanogo_basecaller/utils/file_parser.py' 2025-04-01T00:15:07,362 adding 'nanogo_basecaller/utils/id_extraction.py' 2025-04-01T00:15:07,364 adding 'nanogo_basecaller/utils/io_selection.py' 2025-04-01T00:15:07,366 adding 'nanogo_basecaller/utils/path_translator.py' 2025-04-01T00:15:07,368 adding 'nanogo_basecaller/utils/paths.py' 2025-04-01T00:15:07,370 adding 'nanogo_basecaller/utils/sequencing/__init__.py' 2025-04-01T00:15:07,372 adding 'nanogo_basecaller/utils/sequencing/extractors.py' 2025-04-01T00:15:07,374 adding 'nanogo_basecaller/utils/sequencing/metadata.py' 2025-04-01T00:15:07,376 adding 'nanogo_basecaller/utils/sequencing/models.py' 2025-04-01T00:15:07,378 adding 'nanogo_basecaller/workflows/__init__.py' 2025-04-01T00:15:07,380 adding 'nanogo_basecaller/workflows/basecalling.py' 2025-04-01T00:15:07,382 adding 'nanogo_basecaller-0.1.5.dist-info/AUTHORS.md' 2025-04-01T00:15:07,388 adding 'nanogo_basecaller-0.1.5.dist-info/LICENSE' 2025-04-01T00:15:07,391 adding 'nanogo_basecaller-0.1.5.dist-info/METADATA' 2025-04-01T00:15:07,393 adding 'nanogo_basecaller-0.1.5.dist-info/WHEEL' 2025-04-01T00:15:07,394 adding 'nanogo_basecaller-0.1.5.dist-info/entry_points.txt' 2025-04-01T00:15:07,395 adding 'nanogo_basecaller-0.1.5.dist-info/top_level.txt' 2025-04-01T00:15:07,397 adding 'nanogo_basecaller-0.1.5.dist-info/RECORD' 2025-04-01T00:15:07,400 removing build/bdist.linux-armv7l/wheel 2025-04-01T00:15:07,507 Building wheel for nanogo-basecaller (setup.py): finished with status 'done' 2025-04-01T00:15:07,510 Created wheel for nanogo-basecaller: filename=nanogo_basecaller-0.1.5-py3-none-any.whl size=88100 sha256=f5e86940680094fbb7c6e7d0c1ac9ba319e975c80a0cfa5e8a652bb23193134a 2025-04-01T00:15:07,511 Stored in directory: /tmp/pip-ephem-wheel-cache-wdsf8l0x/wheels/77/45/f9/53cc7b988121944b5465027232a42d94312cb46fa9feeabc66 2025-04-01T00:15:07,528 Successfully built nanogo-basecaller 2025-04-01T00:15:07,535 Removed build tracker: '/tmp/pip-build-tracker-sutuoao9'