2025-04-01T03:37:44,740 Created temporary directory: /tmp/pip-build-tracker-0i6cfciz 2025-04-01T03:37:44,741 Initialized build tracking at /tmp/pip-build-tracker-0i6cfciz 2025-04-01T03:37:44,741 Created build tracker: /tmp/pip-build-tracker-0i6cfciz 2025-04-01T03:37:44,742 Entered build tracker: /tmp/pip-build-tracker-0i6cfciz 2025-04-01T03:37:44,743 Created temporary directory: /tmp/pip-wheel-yu7qe6uv 2025-04-01T03:37:44,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-bl9p30t0 2025-04-01T03:37:44,791 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-04-01T03:37:44,794 2 location(s) to search for versions of jaffatools: 2025-04-01T03:37:44,794 * https://pypi.org/simple/jaffatools/ 2025-04-01T03:37:44,794 * https://www.piwheels.org/simple/jaffatools/ 2025-04-01T03:37:44,794 Fetching project page and analyzing links: https://pypi.org/simple/jaffatools/ 2025-04-01T03:37:44,795 Getting page https://pypi.org/simple/jaffatools/ 2025-04-01T03:37:44,797 Found index url https://pypi.org/simple/ 2025-04-01T03:37:45,015 Fetched page https://pypi.org/simple/jaffatools/ as application/vnd.pypi.simple.v1+json 2025-04-01T03:37:45,017 Found link https://files.pythonhosted.org/packages/70/9b/10cd32313d9f27367f7966299bf7ce77a153843a6015ce0119dcb98d4d31/jaffatools-0.2.0.tar.gz (from https://pypi.org/simple/jaffatools/) (requires-python:>=3.6), version: 0.2.0 2025-04-01T03:37:45,017 Fetching project page and analyzing links: https://www.piwheels.org/simple/jaffatools/ 2025-04-01T03:37:45,018 Getting page https://www.piwheels.org/simple/jaffatools/ 2025-04-01T03:37:45,019 Found index url https://www.piwheels.org/simple/ 2025-04-01T03:37:45,182 Fetched page https://www.piwheels.org/simple/jaffatools/ as text/html 2025-04-01T03:37:45,183 Skipping link: not a file: https://www.piwheels.org/simple/jaffatools/ 2025-04-01T03:37:45,184 Skipping link: not a file: https://pypi.org/simple/jaffatools/ 2025-04-01T03:37:45,203 Given no hashes to check 1 links for project 'jaffatools': discarding no candidates 2025-04-01T03:37:45,205 Collecting jaffatools==0.2.0 2025-04-01T03:37:45,207 Created temporary directory: /tmp/pip-unpack-c3gsm2rp 2025-04-01T03:37:45,421 Downloading jaffatools-0.2.0.tar.gz (6.4 kB) 2025-04-01T03:37:45,456 Added jaffatools==0.2.0 from https://files.pythonhosted.org/packages/70/9b/10cd32313d9f27367f7966299bf7ce77a153843a6015ce0119dcb98d4d31/jaffatools-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-0i6cfciz' 2025-04-01T03:37:45,459 Running setup.py (path:/tmp/pip-wheel-yu7qe6uv/jaffatools_cdf3588d3fb44aa4905d4309daf2475d/setup.py) egg_info for package jaffatools 2025-04-01T03:37:45,459 Created temporary directory: /tmp/pip-pip-egg-info-_ixthr97 2025-04-01T03:37:45,460 Preparing metadata (setup.py): started 2025-04-01T03:37:45,461 Running command python setup.py egg_info 2025-04-01T03:37:46,571 running egg_info 2025-04-01T03:37:46,598 creating /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info 2025-04-01T03:37:46,599 writing /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/PKG-INFO 2025-04-01T03:37:46,602 writing dependency_links to /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/dependency_links.txt 2025-04-01T03:37:46,604 writing entry points to /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/entry_points.txt 2025-04-01T03:37:46,606 writing requirements to /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/requires.txt 2025-04-01T03:37:46,607 writing top-level names to /tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/top_level.txt 2025-04-01T03:37:46,608 writing manifest file '/tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/SOURCES.txt' 2025-04-01T03:37:46,698 reading manifest file '/tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/SOURCES.txt' 2025-04-01T03:37:46,700 adding license file 'LICENSE' 2025-04-01T03:37:46,702 writing manifest file '/tmp/pip-pip-egg-info-_ixthr97/jaffatools.egg-info/SOURCES.txt' 2025-04-01T03:37:46,814 Preparing metadata (setup.py): finished with status 'done' 2025-04-01T03:37:46,818 Source in /tmp/pip-wheel-yu7qe6uv/jaffatools_cdf3588d3fb44aa4905d4309daf2475d has version 0.2.0, which satisfies requirement jaffatools==0.2.0 from https://files.pythonhosted.org/packages/70/9b/10cd32313d9f27367f7966299bf7ce77a153843a6015ce0119dcb98d4d31/jaffatools-0.2.0.tar.gz 2025-04-01T03:37:46,819 Removed jaffatools==0.2.0 from https://files.pythonhosted.org/packages/70/9b/10cd32313d9f27367f7966299bf7ce77a153843a6015ce0119dcb98d4d31/jaffatools-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-0i6cfciz' 2025-04-01T03:37:46,825 Created temporary directory: /tmp/pip-unpack-4t7osxxn 2025-04-01T03:37:46,826 Created temporary directory: /tmp/pip-unpack-__vxup32 2025-04-01T03:37:46,827 Building wheels for collected packages: jaffatools 2025-04-01T03:37:46,831 Created temporary directory: /tmp/pip-wheel-li5xgc8p 2025-04-01T03:37:46,831 Building wheel for jaffatools (setup.py): started 2025-04-01T03:37:46,832 Destination directory: /tmp/pip-wheel-li5xgc8p 2025-04-01T03:37:46,833 Running command python setup.py bdist_wheel 2025-04-01T03:37:47,852 running bdist_wheel 2025-04-01T03:37:47,987 running build 2025-04-01T03:37:47,987 running build_py 2025-04-01T03:37:48,018 creating build/lib/jaffatools 2025-04-01T03:37:48,020 copying jaffatools/fastq_filter.py -> build/lib/jaffatools 2025-04-01T03:37:48,023 copying jaffatools/__init__.py -> build/lib/jaffatools 2025-04-01T03:37:48,025 copying jaffatools/jaffa_runner.py -> build/lib/jaffatools 2025-04-01T03:37:48,028 copying jaffatools/bam_annotator.py -> build/lib/jaffatools 2025-04-01T03:37:48,058 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-04-01T03:37:48,059 !! 2025-04-01T03:37:48,060 ******************************************************************************** 2025-04-01T03:37:48,061 Please avoid running ``setup.py`` directly. 2025-04-01T03:37:48,061 Instead, use pypa/build, pypa/installer or other 2025-04-01T03:37:48,062 standards-based tools. 2025-04-01T03:37:48,063 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-04-01T03:37:48,063 ******************************************************************************** 2025-04-01T03:37:48,064 !! 2025-04-01T03:37:48,065 self.initialize_options() 2025-04-01T03:37:48,088 installing to build/bdist.linux-armv7l/wheel 2025-04-01T03:37:48,088 running install 2025-04-01T03:37:48,111 running install_lib 2025-04-01T03:37:48,139 creating build/bdist.linux-armv7l/wheel 2025-04-01T03:37:48,141 creating build/bdist.linux-armv7l/wheel/jaffatools 2025-04-01T03:37:48,142 copying build/lib/jaffatools/fastq_filter.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T03:37:48,145 copying build/lib/jaffatools/__init__.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T03:37:48,147 copying build/lib/jaffatools/jaffa_runner.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T03:37:48,149 copying build/lib/jaffatools/bam_annotator.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T03:37:48,151 running install_egg_info 2025-04-01T03:37:48,185 running egg_info 2025-04-01T03:37:48,213 writing jaffatools.egg-info/PKG-INFO 2025-04-01T03:37:48,216 writing dependency_links to jaffatools.egg-info/dependency_links.txt 2025-04-01T03:37:48,218 writing entry points to jaffatools.egg-info/entry_points.txt 2025-04-01T03:37:48,219 writing requirements to jaffatools.egg-info/requires.txt 2025-04-01T03:37:48,220 writing top-level names to jaffatools.egg-info/top_level.txt 2025-04-01T03:37:48,250 reading manifest file 'jaffatools.egg-info/SOURCES.txt' 2025-04-01T03:37:48,253 adding license file 'LICENSE' 2025-04-01T03:37:48,256 writing manifest file 'jaffatools.egg-info/SOURCES.txt' 2025-04-01T03:37:48,257 Copying jaffatools.egg-info to build/bdist.linux-armv7l/wheel/./jaffatools-0.2.0-py3.11.egg-info 2025-04-01T03:37:48,268 running install_scripts 2025-04-01T03:37:48,283 creating build/bdist.linux-armv7l/wheel/jaffatools-0.2.0.dist-info/WHEEL 2025-04-01T03:37:48,286 creating '/tmp/pip-wheel-li5xgc8p/jaffatools-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-04-01T03:37:48,288 adding 'jaffatools/__init__.py' 2025-04-01T03:37:48,290 adding 'jaffatools/bam_annotator.py' 2025-04-01T03:37:48,291 adding 'jaffatools/fastq_filter.py' 2025-04-01T03:37:48,293 adding 'jaffatools/jaffa_runner.py' 2025-04-01T03:37:48,295 adding 'jaffatools-0.2.0.dist-info/LICENSE' 2025-04-01T03:37:48,296 adding 'jaffatools-0.2.0.dist-info/METADATA' 2025-04-01T03:37:48,297 adding 'jaffatools-0.2.0.dist-info/WHEEL' 2025-04-01T03:37:48,298 adding 'jaffatools-0.2.0.dist-info/entry_points.txt' 2025-04-01T03:37:48,299 adding 'jaffatools-0.2.0.dist-info/top_level.txt' 2025-04-01T03:37:48,300 adding 'jaffatools-0.2.0.dist-info/RECORD' 2025-04-01T03:37:48,301 removing build/bdist.linux-armv7l/wheel 2025-04-01T03:37:48,415 Building wheel for jaffatools (setup.py): finished with status 'done' 2025-04-01T03:37:48,418 Created wheel for jaffatools: filename=jaffatools-0.2.0-py3-none-any.whl size=7630 sha256=b752625271b1b14dda4c603e2c77c71447d8ff500205ace19d09e02647a05920 2025-04-01T03:37:48,419 Stored in directory: /tmp/pip-ephem-wheel-cache-bl9p30t0/wheels/3c/42/9f/582199f14e7d1f6d79db0c66cb2877dce4b0ebd1bf159ed839 2025-04-01T03:37:48,428 Successfully built jaffatools 2025-04-01T03:37:48,431 Removed build tracker: '/tmp/pip-build-tracker-0i6cfciz'