2025-04-01T05:46:35,243 Created temporary directory: /tmp/pip-build-tracker-wyzcggq8 2025-04-01T05:46:35,244 Initialized build tracking at /tmp/pip-build-tracker-wyzcggq8 2025-04-01T05:46:35,245 Created build tracker: /tmp/pip-build-tracker-wyzcggq8 2025-04-01T05:46:35,245 Entered build tracker: /tmp/pip-build-tracker-wyzcggq8 2025-04-01T05:46:35,246 Created temporary directory: /tmp/pip-wheel-ehget7bs 2025-04-01T05:46:35,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-60v64ein 2025-04-01T05:46:35,297 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-04-01T05:46:35,300 2 location(s) to search for versions of jaffatools: 2025-04-01T05:46:35,300 * https://pypi.org/simple/jaffatools/ 2025-04-01T05:46:35,300 * https://www.piwheels.org/simple/jaffatools/ 2025-04-01T05:46:35,301 Fetching project page and analyzing links: https://pypi.org/simple/jaffatools/ 2025-04-01T05:46:35,302 Getting page https://pypi.org/simple/jaffatools/ 2025-04-01T05:46:35,303 Found index url https://pypi.org/simple/ 2025-04-01T05:46:35,521 Fetched page https://pypi.org/simple/jaffatools/ as application/vnd.pypi.simple.v1+json 2025-04-01T05:46:35,523 Found link https://files.pythonhosted.org/packages/70/9b/10cd32313d9f27367f7966299bf7ce77a153843a6015ce0119dcb98d4d31/jaffatools-0.2.0.tar.gz (from https://pypi.org/simple/jaffatools/) (requires-python:>=3.6), version: 0.2.0 2025-04-01T05:46:35,524 Found link https://files.pythonhosted.org/packages/98/3b/7bc648568915b40b1768e1fa9348126b1448771f1021f8440e2681845f55/jaffatools-0.3.0.tar.gz (from https://pypi.org/simple/jaffatools/) (requires-python:>=3.6), version: 0.3.0 2025-04-01T05:46:35,525 Found link https://files.pythonhosted.org/packages/cf/bb/a00c6fe9bc5bfd158e3b8a02bd07f99744642cd6f5b31fcdf36e46d8db42/jaffatools-0.4.0.tar.gz (from https://pypi.org/simple/jaffatools/) (requires-python:>=3.6), version: 0.4.0 2025-04-01T05:46:35,526 Fetching project page and analyzing links: https://www.piwheels.org/simple/jaffatools/ 2025-04-01T05:46:35,527 Getting page https://www.piwheels.org/simple/jaffatools/ 2025-04-01T05:46:35,528 Found index url https://www.piwheels.org/simple/ 2025-04-01T05:46:35,695 Fetched page https://www.piwheels.org/simple/jaffatools/ as text/html 2025-04-01T05:46:35,697 Skipping link: No binaries permitted for jaffatools: https://www.piwheels.org/simple/jaffatools/jaffatools-0.2.0-py3-none-any.whl#sha256=b752625271b1b14dda4c603e2c77c71447d8ff500205ace19d09e02647a05920 (from https://www.piwheels.org/simple/jaffatools/) (requires-python:>=3.6) 2025-04-01T05:46:35,697 Skipping link: not a file: https://www.piwheels.org/simple/jaffatools/ 2025-04-01T05:46:35,698 Skipping link: not a file: https://pypi.org/simple/jaffatools/ 2025-04-01T05:46:35,718 Given no hashes to check 1 links for project 'jaffatools': discarding no candidates 2025-04-01T05:46:35,719 Collecting jaffatools==0.4.0 2025-04-01T05:46:35,722 Created temporary directory: /tmp/pip-unpack-tr78qhzc 2025-04-01T05:46:35,936 Downloading jaffatools-0.4.0.tar.gz (8.3 kB) 2025-04-01T05:46:35,981 Added jaffatools==0.4.0 from https://files.pythonhosted.org/packages/cf/bb/a00c6fe9bc5bfd158e3b8a02bd07f99744642cd6f5b31fcdf36e46d8db42/jaffatools-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-wyzcggq8' 2025-04-01T05:46:35,983 Running setup.py (path:/tmp/pip-wheel-ehget7bs/jaffatools_c6d29f36b9a847bab69b6500275e3758/setup.py) egg_info for package jaffatools 2025-04-01T05:46:35,984 Created temporary directory: /tmp/pip-pip-egg-info-lnutixwh 2025-04-01T05:46:35,985 Preparing metadata (setup.py): started 2025-04-01T05:46:35,986 Running command python setup.py egg_info 2025-04-01T05:46:37,117 running egg_info 2025-04-01T05:46:37,145 creating /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info 2025-04-01T05:46:37,147 writing /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/PKG-INFO 2025-04-01T05:46:37,150 writing dependency_links to /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/dependency_links.txt 2025-04-01T05:46:37,152 writing entry points to /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/entry_points.txt 2025-04-01T05:46:37,154 writing requirements to /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/requires.txt 2025-04-01T05:46:37,155 writing top-level names to /tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/top_level.txt 2025-04-01T05:46:37,156 writing manifest file '/tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/SOURCES.txt' 2025-04-01T05:46:37,248 reading manifest file '/tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/SOURCES.txt' 2025-04-01T05:46:37,250 adding license file 'LICENSE' 2025-04-01T05:46:37,253 writing manifest file '/tmp/pip-pip-egg-info-lnutixwh/jaffatools.egg-info/SOURCES.txt' 2025-04-01T05:46:37,362 Preparing metadata (setup.py): finished with status 'done' 2025-04-01T05:46:37,366 Source in /tmp/pip-wheel-ehget7bs/jaffatools_c6d29f36b9a847bab69b6500275e3758 has version 0.4.0, which satisfies requirement jaffatools==0.4.0 from https://files.pythonhosted.org/packages/cf/bb/a00c6fe9bc5bfd158e3b8a02bd07f99744642cd6f5b31fcdf36e46d8db42/jaffatools-0.4.0.tar.gz 2025-04-01T05:46:37,367 Removed jaffatools==0.4.0 from https://files.pythonhosted.org/packages/cf/bb/a00c6fe9bc5bfd158e3b8a02bd07f99744642cd6f5b31fcdf36e46d8db42/jaffatools-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-wyzcggq8' 2025-04-01T05:46:37,373 Created temporary directory: /tmp/pip-unpack-wtt564rc 2025-04-01T05:46:37,374 Created temporary directory: /tmp/pip-unpack-da19sx6y 2025-04-01T05:46:37,375 Building wheels for collected packages: jaffatools 2025-04-01T05:46:37,379 Created temporary directory: /tmp/pip-wheel-4s0tz08h 2025-04-01T05:46:37,380 Building wheel for jaffatools (setup.py): started 2025-04-01T05:46:37,381 Destination directory: /tmp/pip-wheel-4s0tz08h 2025-04-01T05:46:37,381 Running command python setup.py bdist_wheel 2025-04-01T05:46:38,419 running bdist_wheel 2025-04-01T05:46:38,555 running build 2025-04-01T05:46:38,555 running build_py 2025-04-01T05:46:38,586 creating build/lib/jaffatools 2025-04-01T05:46:38,588 copying jaffatools/fastq_filter.py -> build/lib/jaffatools 2025-04-01T05:46:38,591 copying jaffatools/__init__.py -> build/lib/jaffatools 2025-04-01T05:46:38,593 copying jaffatools/jaffa_runner.py -> build/lib/jaffatools 2025-04-01T05:46:38,595 copying jaffatools/bam_annotator.py -> build/lib/jaffatools 2025-04-01T05:46:38,598 creating build/lib/jaffatools/cli 2025-04-01T05:46:38,599 copying jaffatools/cli/fastq_filter_cli.py -> build/lib/jaffatools/cli 2025-04-01T05:46:38,602 copying jaffatools/cli/jaffa_runner_cli.py -> build/lib/jaffatools/cli 2025-04-01T05:46:38,604 copying jaffatools/cli/ __init__.py -> build/lib/jaffatools/cli 2025-04-01T05:46:38,606 copying jaffatools/cli/bam_annotator_cli.py -> build/lib/jaffatools/cli 2025-04-01T05:46:38,637 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-04-01T05:46:38,637 !! 2025-04-01T05:46:38,638 ******************************************************************************** 2025-04-01T05:46:38,639 Please avoid running ``setup.py`` directly. 2025-04-01T05:46:38,640 Instead, use pypa/build, pypa/installer or other 2025-04-01T05:46:38,640 standards-based tools. 2025-04-01T05:46:38,641 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-04-01T05:46:38,642 ******************************************************************************** 2025-04-01T05:46:38,643 !! 2025-04-01T05:46:38,644 self.initialize_options() 2025-04-01T05:46:38,665 installing to build/bdist.linux-armv7l/wheel 2025-04-01T05:46:38,666 running install 2025-04-01T05:46:38,689 running install_lib 2025-04-01T05:46:38,717 creating build/bdist.linux-armv7l/wheel 2025-04-01T05:46:38,719 creating build/bdist.linux-armv7l/wheel/jaffatools 2025-04-01T05:46:38,721 creating build/bdist.linux-armv7l/wheel/jaffatools/cli 2025-04-01T05:46:38,722 copying build/lib/jaffatools/cli/fastq_filter_cli.py -> build/bdist.linux-armv7l/wheel/./jaffatools/cli 2025-04-01T05:46:38,725 copying build/lib/jaffatools/cli/jaffa_runner_cli.py -> build/bdist.linux-armv7l/wheel/./jaffatools/cli 2025-04-01T05:46:38,727 copying build/lib/jaffatools/cli/ __init__.py -> build/bdist.linux-armv7l/wheel/./jaffatools/cli 2025-04-01T05:46:38,729 copying build/lib/jaffatools/cli/bam_annotator_cli.py -> build/bdist.linux-armv7l/wheel/./jaffatools/cli 2025-04-01T05:46:38,730 copying build/lib/jaffatools/fastq_filter.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T05:46:38,732 copying build/lib/jaffatools/__init__.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T05:46:38,734 copying build/lib/jaffatools/jaffa_runner.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T05:46:38,736 copying build/lib/jaffatools/bam_annotator.py -> build/bdist.linux-armv7l/wheel/./jaffatools 2025-04-01T05:46:38,738 running install_egg_info 2025-04-01T05:46:38,772 running egg_info 2025-04-01T05:46:38,800 writing jaffatools.egg-info/PKG-INFO 2025-04-01T05:46:38,803 writing dependency_links to jaffatools.egg-info/dependency_links.txt 2025-04-01T05:46:38,805 writing entry points to jaffatools.egg-info/entry_points.txt 2025-04-01T05:46:38,807 writing requirements to jaffatools.egg-info/requires.txt 2025-04-01T05:46:38,808 writing top-level names to jaffatools.egg-info/top_level.txt 2025-04-01T05:46:38,839 reading manifest file 'jaffatools.egg-info/SOURCES.txt' 2025-04-01T05:46:38,841 adding license file 'LICENSE' 2025-04-01T05:46:38,844 writing manifest file 'jaffatools.egg-info/SOURCES.txt' 2025-04-01T05:46:38,845 Copying jaffatools.egg-info to build/bdist.linux-armv7l/wheel/./jaffatools-0.4.0-py3.11.egg-info 2025-04-01T05:46:38,857 running install_scripts 2025-04-01T05:46:38,875 creating build/bdist.linux-armv7l/wheel/jaffatools-0.4.0.dist-info/WHEEL 2025-04-01T05:46:38,878 creating '/tmp/pip-wheel-4s0tz08h/jaffatools-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-04-01T05:46:38,880 adding 'jaffatools/__init__.py' 2025-04-01T05:46:38,882 adding 'jaffatools/bam_annotator.py' 2025-04-01T05:46:38,883 adding 'jaffatools/fastq_filter.py' 2025-04-01T05:46:38,885 adding 'jaffatools/jaffa_runner.py' 2025-04-01T05:46:38,887 adding 'jaffatools/cli/ __init__.py' 2025-04-01T05:46:38,888 adding 'jaffatools/cli/bam_annotator_cli.py' 2025-04-01T05:46:38,890 adding 'jaffatools/cli/fastq_filter_cli.py' 2025-04-01T05:46:38,891 adding 'jaffatools/cli/jaffa_runner_cli.py' 2025-04-01T05:46:38,894 adding 'jaffatools-0.4.0.dist-info/LICENSE' 2025-04-01T05:46:38,895 adding 'jaffatools-0.4.0.dist-info/METADATA' 2025-04-01T05:46:38,896 adding 'jaffatools-0.4.0.dist-info/WHEEL' 2025-04-01T05:46:38,897 adding 'jaffatools-0.4.0.dist-info/entry_points.txt' 2025-04-01T05:46:38,898 adding 'jaffatools-0.4.0.dist-info/top_level.txt' 2025-04-01T05:46:38,899 adding 'jaffatools-0.4.0.dist-info/RECORD' 2025-04-01T05:46:38,900 removing build/bdist.linux-armv7l/wheel 2025-04-01T05:46:39,016 Building wheel for jaffatools (setup.py): finished with status 'done' 2025-04-01T05:46:39,019 Created wheel for jaffatools: filename=jaffatools-0.4.0-py3-none-any.whl size=10748 sha256=06441c6e067eb2d803549ae72cf323e0531c0cce0b4eba89c1b3c98c105b34f9 2025-04-01T05:46:39,020 Stored in directory: /tmp/pip-ephem-wheel-cache-60v64ein/wheels/d9/da/5e/34c8f99e876aa5527c1b86c941f645f6a52f846d1363d2b1b1 2025-04-01T05:46:39,030 Successfully built jaffatools 2025-04-01T05:46:39,034 Removed build tracker: '/tmp/pip-build-tracker-wyzcggq8'