2025-05-30T05:08:53,504 Created temporary directory: /tmp/pip-build-tracker-kvr2gpch 2025-05-30T05:08:53,506 Initialized build tracking at /tmp/pip-build-tracker-kvr2gpch 2025-05-30T05:08:53,506 Created build tracker: /tmp/pip-build-tracker-kvr2gpch 2025-05-30T05:08:53,507 Entered build tracker: /tmp/pip-build-tracker-kvr2gpch 2025-05-30T05:08:53,507 Created temporary directory: /tmp/pip-wheel-j29ctiyj 2025-05-30T05:08:53,511 Created temporary directory: /tmp/pip-ephem-wheel-cache-ixot2fgb 2025-05-30T05:08:53,558 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T05:08:53,561 2 location(s) to search for versions of hca-ingest: 2025-05-30T05:08:53,561 * https://pypi.org/simple/hca-ingest/ 2025-05-30T05:08:53,561 * https://www.piwheels.org/simple/hca-ingest/ 2025-05-30T05:08:53,561 Fetching project page and analyzing links: https://pypi.org/simple/hca-ingest/ 2025-05-30T05:08:53,562 Getting page https://pypi.org/simple/hca-ingest/ 2025-05-30T05:08:53,564 Found index url https://pypi.org/simple/ 2025-05-30T05:08:53,784 Fetched page https://pypi.org/simple/hca-ingest/ as application/vnd.pypi.simple.v1+json 2025-05-30T05:08:53,789 Found link https://files.pythonhosted.org/packages/40/63/cd35e918909d6794645b3ed42242746abf8234ee9098032801b4a8696647/hca_ingest-0.1a0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.1a0 2025-05-30T05:08:53,790 Found link https://files.pythonhosted.org/packages/01/eb/8673794d030d7279d1c3c1d189d72318c86deec9fc5e58580f1c012d8158/hca_ingest-0.1b0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.1b0 2025-05-30T05:08:53,791 Found link https://files.pythonhosted.org/packages/04/d6/588abe55d627325d7aa85c336bb16cbe7a8f339674e573cc07f4f2d82464/hca_ingest-0.3a0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.3a0 2025-05-30T05:08:53,791 Found link https://files.pythonhosted.org/packages/d5/a9/91cddc6e28d3f7f6352fd319b4fc5722e5457c1978b561c11e162505d28b/hca_ingest-0.3b0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.3b0 2025-05-30T05:08:53,792 Found link https://files.pythonhosted.org/packages/65/6c/e471222485630ff426b74e83deba3557c4b8a09c14e3fee6320b9a503d57/hca_ingest-0.4.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.4 2025-05-30T05:08:53,792 Found link https://files.pythonhosted.org/packages/3a/72/c5faf50254ea08b5ca40a4dca1a0d3b27435f777011317686bc560e5ec18/hca_ingest-0.5.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.5 2025-05-30T05:08:53,793 Found link https://files.pythonhosted.org/packages/74/60/0787ae0f66d9677f807b7c565cd21c205c9abfef20e52d4e0e9250b31728/hca_ingest-0.5.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.5.1 2025-05-30T05:08:53,794 Found link https://files.pythonhosted.org/packages/62/08/967a482e013b6206ed0eb47f9e45bb4b525bc9ed79ac9f9c79a9a6098a1b/hca_ingest-0.6.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6 2025-05-30T05:08:53,795 Found link https://files.pythonhosted.org/packages/8b/ec/7825713c4ba981e99b787dd17ba3defbe38ce095751fb35adea29e338d57/hca_ingest-0.6.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.1 2025-05-30T05:08:53,795 Found link https://files.pythonhosted.org/packages/e2/1c/7df5568e600dc3a603741d2c78fbeacb974e6adccbd102b880b73e898a30/hca_ingest-0.6.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.2 2025-05-30T05:08:53,796 Found link https://files.pythonhosted.org/packages/51/a7/59b11e10655dac11ef4fc123d2196da094902495e4dfa08a95ce300081be/hca_ingest-0.6.3.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.3 2025-05-30T05:08:53,797 Found link https://files.pythonhosted.org/packages/91/ff/66dc74f4e467cf993d2c825dad6d704c20d3142760bd10f04a881481884e/hca_ingest-0.6.4.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.4 2025-05-30T05:08:53,798 Found link https://files.pythonhosted.org/packages/27/6b/633b6054ca31324ab83a4a339be1f967511581e8e0baa30804075ad7178e/hca_ingest-0.6.5.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.5 2025-05-30T05:08:53,798 Found link https://files.pythonhosted.org/packages/db/b9/ab2c9919f66d5a2617f38ded5948ac308d0227242b879a72f3bcc1784bdf/hca_ingest-0.6.6.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.6 2025-05-30T05:08:53,799 Found link https://files.pythonhosted.org/packages/57/22/7804b638efe1014b51eb3dd6f3d1dff8f6353848ccd424f32a923708b025/hca_ingest-0.6.7.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.7 2025-05-30T05:08:53,800 Found link https://files.pythonhosted.org/packages/80/10/1b7c1ddd036286b968e916cac64c7ef8c0e54190d3af2d3ec5bb80ade53c/hca_ingest-0.6.8.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.8 2025-05-30T05:08:53,800 Found link https://files.pythonhosted.org/packages/32/4c/b06f8f85a98243687b409d7b9128ee2d9756637f86f44f2d6cfab99d6172/hca_ingest-0.6.9.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.9 2025-05-30T05:08:53,801 Found link https://files.pythonhosted.org/packages/76/eb/08a2232b8a7371f6c02970d3865be2257b56dcf3d01e74bcce3d25e44d25/hca_ingest-0.6.10.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.10 2025-05-30T05:08:53,801 Found link https://files.pythonhosted.org/packages/39/22/30c39d634e9d425fe15a12e89c687c2c5456a14c3a1b5066569df83548f9/hca_ingest-0.6.11.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.11 2025-05-30T05:08:53,802 Found link https://files.pythonhosted.org/packages/86/87/3f0a7e394211ea0a200b5cb0ea3754e6c9d9e2116091481e326b6db811c7/hca_ingest-0.6.12.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 0.6.12 2025-05-30T05:08:53,802 Found link https://files.pythonhosted.org/packages/88/16/a5fc2a438da64b45603242a8a2fa7393aa1b6a66368b5a92897944326b44/hca_ingest-1.0.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 1.0.0 2025-05-30T05:08:53,803 Found link https://files.pythonhosted.org/packages/08/65/fc1c0e262f2b9d01c85cad7b76f356e417caba770129c2395dad83dfe4b4/hca_ingest-1.0.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 1.0.1 2025-05-30T05:08:53,804 Found link https://files.pythonhosted.org/packages/2a/a0/5d02bc961de51047c6f25d2fa4b27d27e0a546dae01ddea058fc410290f3/hca_ingest-1.0.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 1.0.2 2025-05-30T05:08:53,804 Found link https://files.pythonhosted.org/packages/28/3e/7738a95ded1ce2509e6dbbb58dd34265420e5a50bbef99dd06f10738ec7f/hca-ingest-2.0.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.0.1 2025-05-30T05:08:53,805 Found link https://files.pythonhosted.org/packages/fc/0e/8de37248f7e8f5a6743be5b6e7c10a93d8be2ef48df4c3cd54781c021d9e/hca-ingest-2.1.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.1.0 2025-05-30T05:08:53,806 Found link https://files.pythonhosted.org/packages/ea/f8/e853309bcea77de81c907a57a1d182fd63fe8988d36323e73f0beb74335d/hca-ingest-2.2.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.2.0 2025-05-30T05:08:53,806 Found link https://files.pythonhosted.org/packages/06/34/714bd7236a162de34b1e6425619dd1c0f5ebaaf3b47ea346154131f91f64/hca-ingest-2.3.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.3.0 2025-05-30T05:08:53,807 Found link https://files.pythonhosted.org/packages/10/94/bc2ac0c789c040d0dd27e3cdcac6be5c652cdb9d131663d859b0377240cd/hca-ingest-2.4.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.0 2025-05-30T05:08:53,808 Found link https://files.pythonhosted.org/packages/0b/0e/3d67ff3248cee1dc38c09d7b796de62a2087db5a7d8151a42ac2a16bcc4c/hca-ingest-2.4.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.1 2025-05-30T05:08:53,808 Found link https://files.pythonhosted.org/packages/cf/69/f435d36acdbd6a6a09bdb75e3c95a03529b2e63295e948ba2e8540f4e4b8/hca-ingest-2.5.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.0 2025-05-30T05:08:53,809 Found link https://files.pythonhosted.org/packages/50/25/30209a19a93fad1ea989e32b08fb16511370f592df05cb9a081b18713a93/hca-ingest-2.5.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.1 2025-05-30T05:08:53,810 Found link https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.2 2025-05-30T05:08:53,811 Found link https://files.pythonhosted.org/packages/26/bd/5966bcf7b5d54a5d90363b613b58878108affcb85d23f17163e1b507ce9e/hca-ingest-2.6.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.6.0 2025-05-30T05:08:53,811 Found link https://files.pythonhosted.org/packages/a5/97/7478625881120f6ecb80ff32e55147e6ed0561ee32d789fccf23892ee222/hca-ingest-2.7.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.7.0 2025-05-30T05:08:53,812 Found link https://files.pythonhosted.org/packages/e9/c7/8ea415cc1cfb76d1ba501bc6456986fe17ef872b0f79eb0eba7de7ada3ae/hca-ingest-2.7.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.7.1 2025-05-30T05:08:53,812 Found link https://files.pythonhosted.org/packages/4f/33/f07cdf88966ced34a08496c7bdde6d4157252753833788680a57fd079799/hca-ingest-2.7.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.7.2 2025-05-30T05:08:53,813 Found link https://files.pythonhosted.org/packages/50/a5/2443f5218ba74ace54882634c918e054daa82d74b02b3895a06379c56e73/hca-ingest-2.7.3.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.7.3 2025-05-30T05:08:53,813 Found link https://files.pythonhosted.org/packages/78/eb/79d76afcc921b3cbc4ad0c8d26dd4088da28dd629c9bbe697fb226d5e0e7/hca-ingest-2.8.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.8.0 2025-05-30T05:08:53,814 Found link https://files.pythonhosted.org/packages/aa/f4/8254dbdcaa47d523f68f825db57aaab8fecc03b22cb5bdd84f296e088f67/hca-ingest-2.8.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.8.1 2025-05-30T05:08:53,815 Fetching project page and analyzing links: https://www.piwheels.org/simple/hca-ingest/ 2025-05-30T05:08:53,815 Getting page https://www.piwheels.org/simple/hca-ingest/ 2025-05-30T05:08:53,817 Found index url https://www.piwheels.org/simple/ 2025-05-30T05:08:53,976 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hca-ingest/ 2025-05-30T05:08:54,626 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hca-ingest/ 2025-05-30T05:08:55,774 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hca-ingest/ 2025-05-30T05:08:57,974 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hca-ingest/ 2025-05-30T05:09:02,185 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hca-ingest/ 2025-05-30T05:09:02,378 Could not fetch URL https://www.piwheels.org/simple/hca-ingest/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hca-ingest/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T05:09:02,379 Skipping link: not a file: https://www.piwheels.org/simple/hca-ingest/ 2025-05-30T05:09:02,380 Skipping link: not a file: https://pypi.org/simple/hca-ingest/ 2025-05-30T05:09:02,402 Given no hashes to check 1 links for project 'hca-ingest': discarding no candidates 2025-05-30T05:09:02,404 Collecting hca-ingest==2.8.1 2025-05-30T05:09:02,406 Created temporary directory: /tmp/pip-unpack-nuskx1gt 2025-05-30T05:09:02,623 Downloading hca-ingest-2.8.1.tar.gz (60 kB) 2025-05-30T05:09:02,778 Added hca-ingest==2.8.1 from https://files.pythonhosted.org/packages/aa/f4/8254dbdcaa47d523f68f825db57aaab8fecc03b22cb5bdd84f296e088f67/hca-ingest-2.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-kvr2gpch' 2025-05-30T05:09:02,781 Running setup.py (path:/tmp/pip-wheel-j29ctiyj/hca-ingest_cc19e72613734caeb45dfd2674d35016/setup.py) egg_info for package hca-ingest 2025-05-30T05:09:02,781 Created temporary directory: /tmp/pip-pip-egg-info-6tnqzqy_ 2025-05-30T05:09:02,782 Preparing metadata (setup.py): started 2025-05-30T05:09:02,783 Running command python setup.py egg_info 2025-05-30T05:09:03,691 running egg_info 2025-05-30T05:09:03,717 creating /tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info 2025-05-30T05:09:03,718 writing /tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/PKG-INFO 2025-05-30T05:09:03,722 writing dependency_links to /tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/dependency_links.txt 2025-05-30T05:09:03,724 writing requirements to /tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/requires.txt 2025-05-30T05:09:03,725 writing top-level names to /tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/top_level.txt 2025-05-30T05:09:03,726 writing manifest file '/tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/SOURCES.txt' 2025-05-30T05:09:03,819 reading manifest file '/tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/SOURCES.txt' 2025-05-30T05:09:03,820 reading manifest template 'MANIFEST.in' 2025-05-30T05:09:03,822 adding license file 'LICENSE' 2025-05-30T05:09:03,826 writing manifest file '/tmp/pip-pip-egg-info-6tnqzqy_/hca_ingest.egg-info/SOURCES.txt' 2025-05-30T05:09:03,933 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T05:09:03,937 Source in /tmp/pip-wheel-j29ctiyj/hca-ingest_cc19e72613734caeb45dfd2674d35016 has version 2.8.1, which satisfies requirement hca-ingest==2.8.1 from https://files.pythonhosted.org/packages/aa/f4/8254dbdcaa47d523f68f825db57aaab8fecc03b22cb5bdd84f296e088f67/hca-ingest-2.8.1.tar.gz 2025-05-30T05:09:03,938 Removed hca-ingest==2.8.1 from https://files.pythonhosted.org/packages/aa/f4/8254dbdcaa47d523f68f825db57aaab8fecc03b22cb5bdd84f296e088f67/hca-ingest-2.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-kvr2gpch' 2025-05-30T05:09:03,945 Created temporary directory: /tmp/pip-unpack-ha5td_d4 2025-05-30T05:09:03,946 Created temporary directory: /tmp/pip-unpack-g984s8yk 2025-05-30T05:09:03,947 Building wheels for collected packages: hca-ingest 2025-05-30T05:09:03,951 Created temporary directory: /tmp/pip-wheel-7qe1q2yq 2025-05-30T05:09:03,951 DEPRECATION: Building 'hca-ingest' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hca-ingest'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T05:09:03,953 Building wheel for hca-ingest (setup.py): started 2025-05-30T05:09:03,954 Destination directory: /tmp/pip-wheel-7qe1q2yq 2025-05-30T05:09:03,955 Running command python setup.py bdist_wheel 2025-05-30T05:09:04,992 running bdist_wheel 2025-05-30T05:09:05,120 running build 2025-05-30T05:09:05,121 running build_py 2025-05-30T05:09:05,150 creating build/lib/hca_ingest 2025-05-30T05:09:05,152 copying hca_ingest/__init__.py -> build/lib/hca_ingest 2025-05-30T05:09:05,155 creating build/lib/hca_ingest/utils 2025-05-30T05:09:05,156 copying hca_ingest/utils/s2s_token_client.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,158 copying hca_ingest/utils/token_manager.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,160 copying hca_ingest/utils/doctict.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,162 copying hca_ingest/utils/date.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,164 copying hca_ingest/utils/generate_redaction_manifest.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,167 copying hca_ingest/utils/IngestError.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,168 copying hca_ingest/utils/bundlevalidator.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,170 copying hca_ingest/utils/validationreport.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,172 copying hca_ingest/utils/__init__.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,173 copying hca_ingest/utils/spreadsheet.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,175 copying hca_ingest/utils/errorreport.py -> build/lib/hca_ingest/utils 2025-05-30T05:09:05,178 creating build/lib/hca_ingest/downloader 2025-05-30T05:09:05,179 copying hca_ingest/downloader/data_collector.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,181 copying hca_ingest/downloader/downloader.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,183 copying hca_ingest/downloader/schema_url.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,185 copying hca_ingest/downloader/flattener.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,187 copying hca_ingest/downloader/__init__.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,188 copying hca_ingest/downloader/entity.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,190 copying hca_ingest/downloader/workbook.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,192 copying hca_ingest/downloader/schema_collector.py -> build/lib/hca_ingest/downloader 2025-05-30T05:09:05,194 creating build/lib/hca_ingest/api 2025-05-30T05:09:05,195 copying hca_ingest/api/stagingapi.py -> build/lib/hca_ingest/api 2025-05-30T05:09:05,197 copying hca_ingest/api/requests_utils.py -> build/lib/hca_ingest/api 2025-05-30T05:09:05,199 copying hca_ingest/api/ingestapi.py -> build/lib/hca_ingest/api 2025-05-30T05:09:05,202 copying hca_ingest/api/__init__.py -> build/lib/hca_ingest/api 2025-05-30T05:09:05,204 creating build/lib/hca_ingest/template 2025-05-30T05:09:05,205 copying hca_ingest/template/schema_parser.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,207 copying hca_ingest/template/tab_config.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,209 copying hca_ingest/template/vanilla_spreadsheet_builder.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,212 copying hca_ingest/template/descriptor.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,214 copying hca_ingest/template/linked_spreadsheet_builder.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,217 copying hca_ingest/template/__init__.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,218 copying hca_ingest/template/migration_parser.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,220 copying hca_ingest/template/spreadsheet_builder.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,223 copying hca_ingest/template/schema_template.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,226 copying hca_ingest/template/exceptions.py -> build/lib/hca_ingest/template 2025-05-30T05:09:05,228 creating build/lib/hca_ingest/importer 2025-05-30T05:09:05,230 copying hca_ingest/importer/data_node.py -> build/lib/hca_ingest/importer 2025-05-30T05:09:05,232 copying hca_ingest/importer/importer.py -> build/lib/hca_ingest/importer 2025-05-30T05:09:05,235 copying hca_ingest/importer/__init__.py -> build/lib/hca_ingest/importer 2025-05-30T05:09:05,237 creating build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,238 copying hca_ingest/importer/submission/ingest_submitter.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,240 copying hca_ingest/importer/submission/errors.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,242 copying hca_ingest/importer/submission/entity_linker.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,244 copying hca_ingest/importer/submission/entity_map.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,246 copying hca_ingest/importer/submission/__init__.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,248 copying hca_ingest/importer/submission/entity.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,250 copying hca_ingest/importer/submission/submission.py -> build/lib/hca_ingest/importer/submission 2025-05-30T05:09:05,252 creating build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,253 copying hca_ingest/importer/conversion/conversion_strategy.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,255 copying hca_ingest/importer/conversion/metadata_entity.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,257 copying hca_ingest/importer/conversion/template_manager.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,260 copying hca_ingest/importer/conversion/column_specification.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,262 copying hca_ingest/importer/conversion/utils.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,264 copying hca_ingest/importer/conversion/data_converter.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,266 copying hca_ingest/importer/conversion/__init__.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,267 copying hca_ingest/importer/conversion/exceptions.py -> build/lib/hca_ingest/importer/conversion 2025-05-30T05:09:05,270 creating build/lib/hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,271 copying hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/lib/hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,274 copying hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/lib/hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,276 copying hca_ingest/importer/spreadsheet/__init__.py -> build/lib/hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,277 running egg_info 2025-05-30T05:09:05,304 writing hca_ingest.egg-info/PKG-INFO 2025-05-30T05:09:05,307 writing dependency_links to hca_ingest.egg-info/dependency_links.txt 2025-05-30T05:09:05,309 writing requirements to hca_ingest.egg-info/requires.txt 2025-05-30T05:09:05,310 writing top-level names to hca_ingest.egg-info/top_level.txt 2025-05-30T05:09:05,347 reading manifest file 'hca_ingest.egg-info/SOURCES.txt' 2025-05-30T05:09:05,352 reading manifest template 'MANIFEST.in' 2025-05-30T05:09:05,353 adding license file 'LICENSE' 2025-05-30T05:09:05,357 writing manifest file 'hca_ingest.egg-info/SOURCES.txt' 2025-05-30T05:09:05,394 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T05:09:05,394 !! 2025-05-30T05:09:05,395 ******************************************************************************** 2025-05-30T05:09:05,396 Please avoid running ``setup.py`` directly. 2025-05-30T05:09:05,396 Instead, use pypa/build, pypa/installer or other 2025-05-30T05:09:05,397 standards-based tools. 2025-05-30T05:09:05,398 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T05:09:05,398 or your builds will no longer be supported. 2025-05-30T05:09:05,400 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T05:09:05,400 ******************************************************************************** 2025-05-30T05:09:05,401 !! 2025-05-30T05:09:05,402 self.initialize_options() 2025-05-30T05:09:05,421 installing to build/bdist.linux-armv7l/wheel 2025-05-30T05:09:05,422 running install 2025-05-30T05:09:05,445 running install_lib 2025-05-30T05:09:05,473 creating build/bdist.linux-armv7l/wheel 2025-05-30T05:09:05,475 creating build/bdist.linux-armv7l/wheel/hca_ingest 2025-05-30T05:09:05,477 creating build/bdist.linux-armv7l/wheel/hca_ingest/utils 2025-05-30T05:09:05,478 copying build/lib/hca_ingest/utils/s2s_token_client.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,480 copying build/lib/hca_ingest/utils/token_manager.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,482 copying build/lib/hca_ingest/utils/doctict.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,484 copying build/lib/hca_ingest/utils/date.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,486 copying build/lib/hca_ingest/utils/generate_redaction_manifest.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,488 copying build/lib/hca_ingest/utils/IngestError.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,490 copying build/lib/hca_ingest/utils/bundlevalidator.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,493 copying build/lib/hca_ingest/utils/validationreport.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,495 copying build/lib/hca_ingest/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,496 copying build/lib/hca_ingest/utils/spreadsheet.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,499 copying build/lib/hca_ingest/utils/errorreport.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/utils 2025-05-30T05:09:05,502 creating build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2025-05-30T05:09:05,503 copying build/lib/hca_ingest/downloader/data_collector.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,505 copying build/lib/hca_ingest/downloader/downloader.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,507 copying build/lib/hca_ingest/downloader/schema_url.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,509 copying build/lib/hca_ingest/downloader/flattener.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,511 copying build/lib/hca_ingest/downloader/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,513 copying build/lib/hca_ingest/downloader/entity.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,515 copying build/lib/hca_ingest/downloader/workbook.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,517 copying build/lib/hca_ingest/downloader/schema_collector.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/downloader 2025-05-30T05:09:05,520 creating build/bdist.linux-armv7l/wheel/hca_ingest/api 2025-05-30T05:09:05,521 copying build/lib/hca_ingest/api/stagingapi.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/api 2025-05-30T05:09:05,524 copying build/lib/hca_ingest/api/requests_utils.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/api 2025-05-30T05:09:05,526 copying build/lib/hca_ingest/api/ingestapi.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/api 2025-05-30T05:09:05,529 copying build/lib/hca_ingest/api/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/api 2025-05-30T05:09:05,531 creating build/bdist.linux-armv7l/wheel/hca_ingest/template 2025-05-30T05:09:05,533 copying build/lib/hca_ingest/template/schema_parser.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,536 copying build/lib/hca_ingest/template/tab_config.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,538 copying build/lib/hca_ingest/template/vanilla_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,541 copying build/lib/hca_ingest/template/descriptor.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,544 copying build/lib/hca_ingest/template/linked_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,546 copying build/lib/hca_ingest/template/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,548 copying build/lib/hca_ingest/template/migration_parser.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,550 copying build/lib/hca_ingest/template/spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,553 copying build/lib/hca_ingest/template/schema_template.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,555 copying build/lib/hca_ingest/template/exceptions.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/template 2025-05-30T05:09:05,558 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer 2025-05-30T05:09:05,560 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2025-05-30T05:09:05,561 copying build/lib/hca_ingest/importer/submission/ingest_submitter.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,564 copying build/lib/hca_ingest/importer/submission/errors.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,566 copying build/lib/hca_ingest/importer/submission/entity_linker.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,568 copying build/lib/hca_ingest/importer/submission/entity_map.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,571 copying build/lib/hca_ingest/importer/submission/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,572 copying build/lib/hca_ingest/importer/submission/entity.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,574 copying build/lib/hca_ingest/importer/submission/submission.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/submission 2025-05-30T05:09:05,577 copying build/lib/hca_ingest/importer/data_node.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer 2025-05-30T05:09:05,580 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2025-05-30T05:09:05,581 copying build/lib/hca_ingest/importer/conversion/conversion_strategy.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,584 copying build/lib/hca_ingest/importer/conversion/metadata_entity.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,586 copying build/lib/hca_ingest/importer/conversion/template_manager.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,589 copying build/lib/hca_ingest/importer/conversion/column_specification.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,591 copying build/lib/hca_ingest/importer/conversion/utils.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,594 copying build/lib/hca_ingest/importer/conversion/data_converter.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,596 copying build/lib/hca_ingest/importer/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,598 copying build/lib/hca_ingest/importer/conversion/exceptions.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/conversion 2025-05-30T05:09:05,601 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,602 copying build/lib/hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,605 copying build/lib/hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,607 copying build/lib/hca_ingest/importer/spreadsheet/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer/spreadsheet 2025-05-30T05:09:05,609 copying build/lib/hca_ingest/importer/importer.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer 2025-05-30T05:09:05,612 copying build/lib/hca_ingest/importer/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest/importer 2025-05-30T05:09:05,614 copying build/lib/hca_ingest/__init__.py -> build/bdist.linux-armv7l/wheel/./hca_ingest 2025-05-30T05:09:05,615 running install_egg_info 2025-05-30T05:09:05,650 Copying hca_ingest.egg-info to build/bdist.linux-armv7l/wheel/./hca_ingest-2.8.1-py3.11.egg-info 2025-05-30T05:09:05,661 running install_scripts 2025-05-30T05:09:05,674 creating build/bdist.linux-armv7l/wheel/hca_ingest-2.8.1.dist-info/WHEEL 2025-05-30T05:09:05,676 creating '/tmp/pip-wheel-7qe1q2yq/hca_ingest-2.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T05:09:05,679 adding 'hca_ingest/__init__.py' 2025-05-30T05:09:05,681 adding 'hca_ingest/api/__init__.py' 2025-05-30T05:09:05,684 adding 'hca_ingest/api/ingestapi.py' 2025-05-30T05:09:05,686 adding 'hca_ingest/api/requests_utils.py' 2025-05-30T05:09:05,688 adding 'hca_ingest/api/stagingapi.py' 2025-05-30T05:09:05,690 adding 'hca_ingest/downloader/__init__.py' 2025-05-30T05:09:05,692 adding 'hca_ingest/downloader/data_collector.py' 2025-05-30T05:09:05,694 adding 'hca_ingest/downloader/downloader.py' 2025-05-30T05:09:05,696 adding 'hca_ingest/downloader/entity.py' 2025-05-30T05:09:05,698 adding 'hca_ingest/downloader/flattener.py' 2025-05-30T05:09:05,700 adding 'hca_ingest/downloader/schema_collector.py' 2025-05-30T05:09:05,702 adding 'hca_ingest/downloader/schema_url.py' 2025-05-30T05:09:05,703 adding 'hca_ingest/downloader/workbook.py' 2025-05-30T05:09:05,705 adding 'hca_ingest/importer/__init__.py' 2025-05-30T05:09:05,707 adding 'hca_ingest/importer/data_node.py' 2025-05-30T05:09:05,710 adding 'hca_ingest/importer/importer.py' 2025-05-30T05:09:05,712 adding 'hca_ingest/importer/conversion/__init__.py' 2025-05-30T05:09:05,714 adding 'hca_ingest/importer/conversion/column_specification.py' 2025-05-30T05:09:05,716 adding 'hca_ingest/importer/conversion/conversion_strategy.py' 2025-05-30T05:09:05,718 adding 'hca_ingest/importer/conversion/data_converter.py' 2025-05-30T05:09:05,719 adding 'hca_ingest/importer/conversion/exceptions.py' 2025-05-30T05:09:05,721 adding 'hca_ingest/importer/conversion/metadata_entity.py' 2025-05-30T05:09:05,723 adding 'hca_ingest/importer/conversion/template_manager.py' 2025-05-30T05:09:05,725 adding 'hca_ingest/importer/conversion/utils.py' 2025-05-30T05:09:05,727 adding 'hca_ingest/importer/spreadsheet/__init__.py' 2025-05-30T05:09:05,729 adding 'hca_ingest/importer/spreadsheet/ingest_workbook.py' 2025-05-30T05:09:05,731 adding 'hca_ingest/importer/spreadsheet/ingest_worksheet.py' 2025-05-30T05:09:05,733 adding 'hca_ingest/importer/submission/__init__.py' 2025-05-30T05:09:05,734 adding 'hca_ingest/importer/submission/entity.py' 2025-05-30T05:09:05,736 adding 'hca_ingest/importer/submission/entity_linker.py' 2025-05-30T05:09:05,738 adding 'hca_ingest/importer/submission/entity_map.py' 2025-05-30T05:09:05,739 adding 'hca_ingest/importer/submission/errors.py' 2025-05-30T05:09:05,741 adding 'hca_ingest/importer/submission/ingest_submitter.py' 2025-05-30T05:09:05,742 adding 'hca_ingest/importer/submission/submission.py' 2025-05-30T05:09:05,744 adding 'hca_ingest/template/__init__.py' 2025-05-30T05:09:05,746 adding 'hca_ingest/template/descriptor.py' 2025-05-30T05:09:05,748 adding 'hca_ingest/template/exceptions.py' 2025-05-30T05:09:05,750 adding 'hca_ingest/template/linked_spreadsheet_builder.py' 2025-05-30T05:09:05,752 adding 'hca_ingest/template/migration_parser.py' 2025-05-30T05:09:05,754 adding 'hca_ingest/template/schema_parser.py' 2025-05-30T05:09:05,756 adding 'hca_ingest/template/schema_template.py' 2025-05-30T05:09:05,759 adding 'hca_ingest/template/spreadsheet_builder.py' 2025-05-30T05:09:05,760 adding 'hca_ingest/template/tab_config.py' 2025-05-30T05:09:05,762 adding 'hca_ingest/template/vanilla_spreadsheet_builder.py' 2025-05-30T05:09:05,764 adding 'hca_ingest/utils/IngestError.py' 2025-05-30T05:09:05,766 adding 'hca_ingest/utils/__init__.py' 2025-05-30T05:09:05,767 adding 'hca_ingest/utils/bundlevalidator.py' 2025-05-30T05:09:05,769 adding 'hca_ingest/utils/date.py' 2025-05-30T05:09:05,770 adding 'hca_ingest/utils/doctict.py' 2025-05-30T05:09:05,772 adding 'hca_ingest/utils/errorreport.py' 2025-05-30T05:09:05,773 adding 'hca_ingest/utils/generate_redaction_manifest.py' 2025-05-30T05:09:05,775 adding 'hca_ingest/utils/s2s_token_client.py' 2025-05-30T05:09:05,776 adding 'hca_ingest/utils/spreadsheet.py' 2025-05-30T05:09:05,778 adding 'hca_ingest/utils/token_manager.py' 2025-05-30T05:09:05,779 adding 'hca_ingest/utils/validationreport.py' 2025-05-30T05:09:05,783 adding 'hca_ingest-2.8.1.dist-info/licenses/LICENSE' 2025-05-30T05:09:05,785 adding 'hca_ingest-2.8.1.dist-info/METADATA' 2025-05-30T05:09:05,786 adding 'hca_ingest-2.8.1.dist-info/WHEEL' 2025-05-30T05:09:05,788 adding 'hca_ingest-2.8.1.dist-info/top_level.txt' 2025-05-30T05:09:05,790 adding 'hca_ingest-2.8.1.dist-info/RECORD' 2025-05-30T05:09:05,794 removing build/bdist.linux-armv7l/wheel 2025-05-30T05:09:05,939 Building wheel for hca-ingest (setup.py): finished with status 'done' 2025-05-30T05:09:05,943 Created wheel for hca-ingest: filename=hca_ingest-2.8.1-py3-none-any.whl size=74321 sha256=6f5625e8a28376201253e492964f704b6b87727f2f0dbfab1519849a0e83612c 2025-05-30T05:09:05,944 Stored in directory: /tmp/pip-ephem-wheel-cache-ixot2fgb/wheels/4e/37/26/6ce6177f3ce1e21f0b9c97674b42c97a2f33398890e0a9e175 2025-05-30T05:09:05,956 Successfully built hca-ingest 2025-05-30T05:09:05,960 Removed build tracker: '/tmp/pip-build-tracker-kvr2gpch'