2025-05-30T09:07:04,250 Created temporary directory: /tmp/pip-build-tracker-iovwqq73 2025-05-30T09:07:04,251 Initialized build tracking at /tmp/pip-build-tracker-iovwqq73 2025-05-30T09:07:04,251 Created build tracker: /tmp/pip-build-tracker-iovwqq73 2025-05-30T09:07:04,252 Entered build tracker: /tmp/pip-build-tracker-iovwqq73 2025-05-30T09:07:04,252 Created temporary directory: /tmp/pip-wheel-a_udjfs_ 2025-05-30T09:07:04,256 Created temporary directory: /tmp/pip-ephem-wheel-cache-pds364hj 2025-05-30T09:07:04,313 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T09:07:04,315 2 location(s) to search for versions of sigprofilermatrixgenerator: 2025-05-30T09:07:04,315 * https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:04,315 * https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:04,316 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:04,317 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https://files.pythonhosted.org/packages/e0/23/1ed924d3c2cb9a25decfa9b83720b34472b2004136f5c6fa1507318401e5/SigProfilerMatrixGenerator-1.2.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,674 Found link https://files.pythonhosted.org/packages/5e/94/7152ba5b194812bb1c8dc2b3871e20d5b79cb36dd215ad88431f011e84fc/SigProfilerMatrixGenerator-1.2.16.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.16 2025-05-30T09:07:04,674 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/73/77/0ba3d1c0d2d44962dac23b0a89627c0198726407e2f28381c24e797516af/SigProfilerMatrixGenerator-1.2.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,675 Found link https://files.pythonhosted.org/packages/a1/1c/23eada3a0890dc1e50f4cc0c7fb40fd5b41c7711249432fcb8fa86c79005/SigProfilerMatrixGenerator-1.2.17.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.17 2025-05-30T09:07:04,676 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/1a/33/a35f640f9ad72c7e0411fb155d08dd0f973e1bcd065a0ea0d73c74668c7f/SigProfilerMatrixGenerator-1.2.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,677 Found link https://files.pythonhosted.org/packages/3f/29/31789419c026c961b8231e17939bb5cbca732b5825d5ea5a885d51537e2e/SigProfilerMatrixGenerator-1.2.18.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.18 2025-05-30T09:07:04,677 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/02/ed/f1741989f17206b0652034e3f5e0026c579d8271fad749852654e3c6f7b8/SigProfilerMatrixGenerator-1.2.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,678 Found link https://files.pythonhosted.org/packages/44/04/11299859bbba1ec2d6b0391394e02ed21d9e239e0ed7d26d3a40ecb3b09b/SigProfilerMatrixGenerator-1.2.19.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.19 2025-05-30T09:07:04,678 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/f0/4b/dcabca5fc451135a128814c7dc1c79253aaaa8d2546ff63c0578ea13cb4c/SigProfilerMatrixGenerator-1.2.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,679 Found link https://files.pythonhosted.org/packages/0a/fb/ca080b8c78c970bde3282e068402fa427bad7ccac21e9d5a75809b82478a/SigProfilerMatrixGenerator-1.2.20.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.20 2025-05-30T09:07:04,680 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/db/71/6ae2286872761f748db754499a79593179ead23c1817314f353e4b38becb/SigProfilerMatrixGenerator-1.2.21-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,681 Found link https://files.pythonhosted.org/packages/04/e8/f01891a955aa00f8f67b5cd550f41df861dbb92541a71502a56e149acb13/SigProfilerMatrixGenerator-1.2.21.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.21 2025-05-30T09:07:04,681 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/bd/49/0d5b7779835fb45a3dedb51612746c3f3c82ca41f3d209dc66e6ecb9fc91/SigProfilerMatrixGenerator-1.2.22-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,682 Found link https://files.pythonhosted.org/packages/52/5a/98ba066b8a27697468680c78581756cf788e51a3832d19cb0a7a585825f5/SigProfilerMatrixGenerator-1.2.22.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.22 2025-05-30T09:07:04,683 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/b6/5b/930b9864dd897ea475ea1021490792ae4f5d4c333b2ac03b199c22755b25/SigProfilerMatrixGenerator-1.2.23-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,683 Found link https://files.pythonhosted.org/packages/ce/97/6591eb6f95af9fee2edd1d9ffa7d547e03b47ad96411da0310cd6743ab0d/SigProfilerMatrixGenerator-1.2.23.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.23 2025-05-30T09:07:04,684 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/73/09/7dbadcc5413cbfaa7fdd3cf27d6a9b96cf90d3c1629d61a57873c00d3035/SigProfilerMatrixGenerator-1.2.24-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,685 Found link https://files.pythonhosted.org/packages/58/b5/da65fdd2d9a87f232ba95d26ea9a4ea1aca03ef6c0b1b88d095bdd25dc9b/SigProfilerMatrixGenerator-1.2.24.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.24 2025-05-30T09:07:04,686 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ff/65/26059d79cd6c48ad4388e7813eecc56f77e6e8bb3626414c94d552103fc8/SigProfilerMatrixGenerator-1.2.25-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,687 Found link https://files.pythonhosted.org/packages/c1/ba/79e4acefa0262d69538848d6652420f182041b31f66425ba44cefc95e90e/SigProfilerMatrixGenerator-1.2.25.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.25 2025-05-30T09:07:04,687 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/a2/90/9f3fb1cdd7c9cace3cfe645e0635f978e9c7ef938301691943e86f2af573/SigProfilerMatrixGenerator-1.2.26-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,688 Found link https://files.pythonhosted.org/packages/41/60/9933d86ea9e982cd684eff2313cd233fabe06fa9901fa4d16f87c6c9ab92/SigProfilerMatrixGenerator-1.2.26.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.26 2025-05-30T09:07:04,688 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ea/43/791f7741f152dadd488e30846d986c77bfc1cd37ab989f50d963976c4f29/SigProfilerMatrixGenerator-1.2.27-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,689 Found link https://files.pythonhosted.org/packages/17/31/d5ab5957d3267c803970d15aea1bb7363fbe61d20a26d24f393beadf665e/SigProfilerMatrixGenerator-1.2.27.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.27 2025-05-30T09:07:04,690 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ee/d0/fa1fc000174edd008efd67a489cccafdc3ed624c3d08ebc025073e1e5d0e/SigProfilerMatrixGenerator-1.2.28-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,691 Found link https://files.pythonhosted.org/packages/98/2c/1a80b4b318b0e5dfb758e86907eefc5912e3448fd4cd9f9416a2f406bce5/SigProfilerMatrixGenerator-1.2.28.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.28 2025-05-30T09:07:04,691 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/25/aa/8472dfaea9856f68d34ec4889bf350ca269d7a138fd629767c30c6d586ef/SigProfilerMatrixGenerator-1.2.29-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,692 Found link https://files.pythonhosted.org/packages/ae/b8/c0500b3a18f0eb6f7250216582942ff128576afe5661feaea9bb4fcbc62e/SigProfilerMatrixGenerator-1.2.29.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.29 2025-05-30T09:07:04,692 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/58/49/f2d56087944c562c86f7071b4306d94894a200f0208be956e4d12b4fe5dc/SigProfilerMatrixGenerator-1.2.30-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,693 Found link https://files.pythonhosted.org/packages/9a/87/627452fe76c9a58105fd5644a16aec98d00b837993af85d6d586578d9e5d/SigProfilerMatrixGenerator-1.2.30.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.30 2025-05-30T09:07:04,694 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/9d/91/2f8a0f2691d8e22de5d143cd14166155686904043aa0ea3f0451e38a354d/SigProfilerMatrixGenerator-1.2.31-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-05-30T09:07:04,695 Found link https://files.pythonhosted.org/packages/4f/fd/8369d583f0f66a009cda3ab7e4cdedc02379eb687bc278f2953e2e336d69/SigProfilerMatrixGenerator-1.2.31.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.31 2025-05-30T09:07:04,695 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/a1/40/ef6e4103386115fb01b2efd4c5ad793ca32c6bc30f94a997dc8accba9c1a/SigProfilerMatrixGenerator-1.3.0-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,696 Found link https://files.pythonhosted.org/packages/69/82/7c044afbd5817ca79d9a2cb758ec0f1e06bcc39a76925b245ae8af023777/sigprofilermatrixgenerator-1.3.0.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.0 2025-05-30T09:07:04,697 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/b7/e0/9a8be7a7b75a539c7d767df7e56558b00b8888a62df20e1e9dcaf499b04d/SigProfilerMatrixGenerator-1.3.1-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,698 Found link https://files.pythonhosted.org/packages/60/ba/3879400b9e8d4e26429cf8e16ac26f8f883f1624f96485ace63fa5b03638/sigprofilermatrixgenerator-1.3.1.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.1 2025-05-30T09:07:04,699 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/2b/60/db28d75b7f43a1fe5f5ef594f33aa1ce67d78d01ef525bae6138c196b5ad/SigProfilerMatrixGenerator-1.3.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,699 Found link https://files.pythonhosted.org/packages/47/22/57c7612954588a7ec782dd45210998174349784fbf92899bc3c15120dafe/SigProfilerMatrixGenerator-1.3.2.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.2 2025-05-30T09:07:04,700 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/61/fa/ed3656aff58bd84d5790c67654fd956206432bf2b314dda5a2ba95685f8b/SigProfilerMatrixGenerator-1.3.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,701 Found link https://files.pythonhosted.org/packages/7f/58/aa14c094cdcd944c0f9d309100dd62f0ae577a592c68df29f847d0153bf2/SigProfilerMatrixGenerator-1.3.3.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.3 2025-05-30T09:07:04,702 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/9e/17/a399d30ea460f41747bf71e92473dfb739670109904b249e7d50994a4a95/sigprofilermatrixgenerator-1.3.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,702 Found link https://files.pythonhosted.org/packages/ae/02/e3022b605fbaaf445ad1c81f0f899d86bf5457ce9f94734cc04a13bde688/sigprofilermatrixgenerator-1.3.4.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.4 2025-05-30T09:07:04,703 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/03/ec/2d912534d838335f7f8a2c3426be79764c71661a0bccc62fabe36d9c5719/sigprofilermatrixgenerator-1.3.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-05-30T09:07:04,704 Found link https://files.pythonhosted.org/packages/df/6f/ea2e6afdea604bce9c007ed0fe51c69f0d921621ce4a28a2a0086d2597ef/sigprofilermatrixgenerator-1.3.5.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.5 2025-05-30T09:07:04,705 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:04,705 Getting page https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:04,707 Found index url https://www.piwheels.org/simple/ 2025-05-30T09:07:04,866 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:05,525 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:06,689 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:08,860 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:13,043 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:13,211 Could not fetch URL https://www.piwheels.org/simple/sigprofilermatrixgenerator/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/sigprofilermatrixgenerator/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T09:07:13,213 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:13,214 Skipping link: not a file: https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-05-30T09:07:13,251 Given no hashes to check 1 links for project 'sigprofilermatrixgenerator': discarding no candidates 2025-05-30T09:07:13,253 Collecting sigprofilermatrixgenerator==1.3.2 2025-05-30T09:07:13,255 Created temporary directory: /tmp/pip-unpack-913jx5hw 2025-05-30T09:07:13,491 Downloading SigProfilerMatrixGenerator-1.3.2.tar.gz (46.6 MB) 2025-05-30T09:07:30,421 Added sigprofilermatrixgenerator==1.3.2 from https://files.pythonhosted.org/packages/47/22/57c7612954588a7ec782dd45210998174349784fbf92899bc3c15120dafe/SigProfilerMatrixGenerator-1.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-iovwqq73' 2025-05-30T09:07:30,423 Running setup.py (path:/tmp/pip-wheel-a_udjfs_/sigprofilermatrixgenerator_c61ad9a6caa44f6a8aedac5f89e1f99a/setup.py) egg_info for package sigprofilermatrixgenerator 2025-05-30T09:07:30,424 Created temporary directory: /tmp/pip-pip-egg-info-pv2qrodg 2025-05-30T09:07:30,425 Preparing metadata (setup.py): started 2025-05-30T09:07:30,426 Running command python setup.py egg_info 2025-05-30T09:07:31,330 running egg_info 2025-05-30T09:07:31,358 creating /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info 2025-05-30T09:07:31,359 writing /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/PKG-INFO 2025-05-30T09:07:31,364 writing dependency_links to /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/dependency_links.txt 2025-05-30T09:07:31,366 writing entry points to /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/entry_points.txt 2025-05-30T09:07:31,368 writing requirements to /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/requires.txt 2025-05-30T09:07:31,369 writing top-level names to /tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/top_level.txt 2025-05-30T09:07:31,371 writing manifest file '/tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-05-30T09:07:31,463 reading manifest file '/tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-05-30T09:07:31,465 reading manifest template 'MANIFEST.in' 2025-05-30T09:07:32,522 adding license file 'LICENSE' 2025-05-30T09:07:32,698 writing manifest file '/tmp/pip-pip-egg-info-pv2qrodg/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-05-30T09:07:32,805 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T09:07:32,810 Source in /tmp/pip-wheel-a_udjfs_/sigprofilermatrixgenerator_c61ad9a6caa44f6a8aedac5f89e1f99a has version 1.3.2, which satisfies requirement sigprofilermatrixgenerator==1.3.2 from https://files.pythonhosted.org/packages/47/22/57c7612954588a7ec782dd45210998174349784fbf92899bc3c15120dafe/SigProfilerMatrixGenerator-1.3.2.tar.gz 2025-05-30T09:07:32,811 Removed sigprofilermatrixgenerator==1.3.2 from https://files.pythonhosted.org/packages/47/22/57c7612954588a7ec782dd45210998174349784fbf92899bc3c15120dafe/SigProfilerMatrixGenerator-1.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-iovwqq73' 2025-05-30T09:07:32,821 Created temporary directory: /tmp/pip-unpack-i7fnoxwd 2025-05-30T09:07:32,822 Created temporary directory: /tmp/pip-unpack-0xkx8pty 2025-05-30T09:07:32,823 Building wheels for collected packages: sigprofilermatrixgenerator 2025-05-30T09:07:32,826 Created temporary directory: /tmp/pip-wheel-ql5faoq0 2025-05-30T09:07:32,827 DEPRECATION: Building 'sigprofilermatrixgenerator' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'sigprofilermatrixgenerator'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T09:07:32,829 Building wheel for sigprofilermatrixgenerator (setup.py): started 2025-05-30T09:07:32,831 Destination directory: /tmp/pip-wheel-ql5faoq0 2025-05-30T09:07:32,831 Running command python setup.py bdist_wheel 2025-05-30T09:07:33,670 running bdist_wheel 2025-05-30T09:07:33,805 running build 2025-05-30T09:07:33,806 running build_py 2025-05-30T09:07:33,838 creating build/lib/SigProfilerMatrixGenerator 2025-05-30T09:07:33,840 copying SigProfilerMatrixGenerator/version.py -> build/lib/SigProfilerMatrixGenerator 2025-05-30T09:07:33,842 copying SigProfilerMatrixGenerator/__init__.py -> build/lib/SigProfilerMatrixGenerator 2025-05-30T09:07:33,844 copying SigProfilerMatrixGenerator/install.py -> build/lib/SigProfilerMatrixGenerator 2025-05-30T09:07:33,847 copying SigProfilerMatrixGenerator/test_helpers.py -> build/lib/SigProfilerMatrixGenerator 2025-05-30T09:07:33,849 running egg_info 2025-05-30T09:07:33,880 writing SigProfilerMatrixGenerator.egg-info/PKG-INFO 2025-05-30T09:07:33,885 writing dependency_links to SigProfilerMatrixGenerator.egg-info/dependency_links.txt 2025-05-30T09:07:33,886 writing entry points to SigProfilerMatrixGenerator.egg-info/entry_points.txt 2025-05-30T09:07:33,888 writing requirements to SigProfilerMatrixGenerator.egg-info/requires.txt 2025-05-30T09:07:33,889 writing top-level names to SigProfilerMatrixGenerator.egg-info/top_level.txt 2025-05-30T09:07:33,922 reading manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-05-30T09:07:33,977 reading manifest template 'MANIFEST.in' 2025-05-30T09:07:34,365 adding license file 'LICENSE' 2025-05-30T09:07:34,418 writing manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-05-30T09:07:34,423 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.controllers' is absent from the `packages` configuration. 2025-05-30T09:07:34,423 !! 2025-05-30T09:07:34,424 ******************************************************************************** 2025-05-30T09:07:34,425 ############################ 2025-05-30T09:07:34,425 # Package would be ignored # 2025-05-30T09:07:34,426 ############################ 2025-05-30T09:07:34,426 Python recognizes 'SigProfilerMatrixGenerator.controllers' as an importable package[^1], 2025-05-30T09:07:34,427 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,428 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,428 package, please make sure that 'SigProfilerMatrixGenerator.controllers' is explicitly added 2025-05-30T09:07:34,429 to the `packages` configuration field. 2025-05-30T09:07:34,430 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,430 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,431 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,432 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,433 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,434 If you don't want 'SigProfilerMatrixGenerator.controllers' to be distributed and are 2025-05-30T09:07:34,435 already explicitly excluding 'SigProfilerMatrixGenerator.controllers' via 2025-05-30T09:07:34,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,436 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,437 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,438 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,441 even if it does not contain any `.py` files. 2025-05-30T09:07:34,442 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,442 directory, all directories are treated like packages. 2025-05-30T09:07:34,443 ******************************************************************************** 2025-05-30T09:07:34,444 !! 2025-05-30T09:07:34,444 check.warn(importable) 2025-05-30T09:07:34,445 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV' is absent from the `packages` configuration. 2025-05-30T09:07:34,445 !! 2025-05-30T09:07:34,447 ******************************************************************************** 2025-05-30T09:07:34,447 ############################ 2025-05-30T09:07:34,448 # Package would be ignored # 2025-05-30T09:07:34,449 ############################ 2025-05-30T09:07:34,449 Python recognizes 'SigProfilerMatrixGenerator.references.CNV' as an importable package[^1], 2025-05-30T09:07:34,450 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,450 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,451 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV' is explicitly added 2025-05-30T09:07:34,451 to the `packages` configuration field. 2025-05-30T09:07:34,452 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,453 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,454 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,456 If you don't want 'SigProfilerMatrixGenerator.references.CNV' to be distributed and are 2025-05-30T09:07:34,456 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV' via 2025-05-30T09:07:34,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,457 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,459 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,462 even if it does not contain any `.py` files. 2025-05-30T09:07:34,463 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,463 directory, all directories are treated like packages. 2025-05-30T09:07:34,464 ******************************************************************************** 2025-05-30T09:07:34,465 !! 2025-05-30T09:07:34,466 check.warn(importable) 2025-05-30T09:07:34,467 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_input' is absent from the `packages` configuration. 2025-05-30T09:07:34,467 !! 2025-05-30T09:07:34,468 ******************************************************************************** 2025-05-30T09:07:34,469 ############################ 2025-05-30T09:07:34,469 # Package would be ignored # 2025-05-30T09:07:34,470 ############################ 2025-05-30T09:07:34,470 Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_input' as an importable package[^1], 2025-05-30T09:07:34,471 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,472 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,472 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_input' is explicitly added 2025-05-30T09:07:34,473 to the `packages` configuration field. 2025-05-30T09:07:34,474 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,475 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,477 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,480 If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_input' to be distributed and are 2025-05-30T09:07:34,480 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_input' via 2025-05-30T09:07:34,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,481 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,482 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,486 even if it does not contain any `.py` files. 2025-05-30T09:07:34,486 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,487 directory, all directories are treated like packages. 2025-05-30T09:07:34,487 ******************************************************************************** 2025-05-30T09:07:34,488 !! 2025-05-30T09:07:34,489 check.warn(importable) 2025-05-30T09:07:34,489 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_output' is absent from the `packages` configuration. 2025-05-30T09:07:34,490 !! 2025-05-30T09:07:34,491 ******************************************************************************** 2025-05-30T09:07:34,492 ############################ 2025-05-30T09:07:34,492 # Package would be ignored # 2025-05-30T09:07:34,493 ############################ 2025-05-30T09:07:34,494 Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_output' as an importable package[^1], 2025-05-30T09:07:34,494 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,496 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,497 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_output' is explicitly added 2025-05-30T09:07:34,497 to the `packages` configuration field. 2025-05-30T09:07:34,499 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,500 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,502 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,504 If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_output' to be distributed and are 2025-05-30T09:07:34,505 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_output' via 2025-05-30T09:07:34,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,507 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,508 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,512 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,512 even if it does not contain any `.py` files. 2025-05-30T09:07:34,513 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,514 directory, all directories are treated like packages. 2025-05-30T09:07:34,514 ******************************************************************************** 2025-05-30T09:07:34,515 !! 2025-05-30T09:07:34,516 check.warn(importable) 2025-05-30T09:07:34,516 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input' is absent from the `packages` configuration. 2025-05-30T09:07:34,517 !! 2025-05-30T09:07:34,518 ******************************************************************************** 2025-05-30T09:07:34,518 ############################ 2025-05-30T09:07:34,518 # Package would be ignored # 2025-05-30T09:07:34,519 ############################ 2025-05-30T09:07:34,519 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input' as an importable package[^1], 2025-05-30T09:07:34,520 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,521 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,521 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input' is explicitly added 2025-05-30T09:07:34,522 to the `packages` configuration field. 2025-05-30T09:07:34,523 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,523 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,524 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,527 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input' to be distributed and are 2025-05-30T09:07:34,528 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input' via 2025-05-30T09:07:34,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,530 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,531 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,534 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,535 even if it does not contain any `.py` files. 2025-05-30T09:07:34,535 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,536 directory, all directories are treated like packages. 2025-05-30T09:07:34,537 ******************************************************************************** 2025-05-30T09:07:34,538 !! 2025-05-30T09:07:34,538 check.warn(importable) 2025-05-30T09:07:34,539 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is absent from the `packages` configuration. 2025-05-30T09:07:34,540 !! 2025-05-30T09:07:34,541 ******************************************************************************** 2025-05-30T09:07:34,541 ############################ 2025-05-30T09:07:34,542 # Package would be ignored # 2025-05-30T09:07:34,543 ############################ 2025-05-30T09:07:34,543 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' as an importable package[^1], 2025-05-30T09:07:34,544 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,545 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,546 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is explicitly added 2025-05-30T09:07:34,546 to the `packages` configuration field. 2025-05-30T09:07:34,547 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,548 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,549 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,551 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' to be distributed and are 2025-05-30T09:07:34,551 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' via 2025-05-30T09:07:34,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,552 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,553 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,556 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,557 even if it does not contain any `.py` files. 2025-05-30T09:07:34,558 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,558 directory, all directories are treated like packages. 2025-05-30T09:07:34,559 ******************************************************************************** 2025-05-30T09:07:34,560 !! 2025-05-30T09:07:34,561 check.warn(importable) 2025-05-30T09:07:34,562 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is absent from the `packages` configuration. 2025-05-30T09:07:34,562 !! 2025-05-30T09:07:34,563 ******************************************************************************** 2025-05-30T09:07:34,564 ############################ 2025-05-30T09:07:34,565 # Package would be ignored # 2025-05-30T09:07:34,565 ############################ 2025-05-30T09:07:34,566 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' as an importable package[^1], 2025-05-30T09:07:34,567 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,568 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,569 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is explicitly added 2025-05-30T09:07:34,569 to the `packages` configuration field. 2025-05-30T09:07:34,570 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,571 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,573 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,575 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' to be distributed and are 2025-05-30T09:07:34,576 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' via 2025-05-30T09:07:34,577 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,578 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,579 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,580 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,582 even if it does not contain any `.py` files. 2025-05-30T09:07:34,582 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,583 directory, all directories are treated like packages. 2025-05-30T09:07:34,583 ******************************************************************************** 2025-05-30T09:07:34,584 !! 2025-05-30T09:07:34,584 check.warn(importable) 2025-05-30T09:07:34,585 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is absent from the `packages` configuration. 2025-05-30T09:07:34,585 !! 2025-05-30T09:07:34,586 ******************************************************************************** 2025-05-30T09:07:34,587 ############################ 2025-05-30T09:07:34,587 # Package would be ignored # 2025-05-30T09:07:34,588 ############################ 2025-05-30T09:07:34,589 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' as an importable package[^1], 2025-05-30T09:07:34,589 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,591 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,591 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is explicitly added 2025-05-30T09:07:34,592 to the `packages` configuration field. 2025-05-30T09:07:34,593 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,595 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,596 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,598 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,599 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' to be distributed and are 2025-05-30T09:07:34,599 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' via 2025-05-30T09:07:34,600 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,601 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,603 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,607 even if it does not contain any `.py` files. 2025-05-30T09:07:34,607 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,608 directory, all directories are treated like packages. 2025-05-30T09:07:34,609 ******************************************************************************** 2025-05-30T09:07:34,610 !! 2025-05-30T09:07:34,610 check.warn(importable) 2025-05-30T09:07:34,611 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome' is absent from the `packages` configuration. 2025-05-30T09:07:34,611 !! 2025-05-30T09:07:34,612 ******************************************************************************** 2025-05-30T09:07:34,612 ############################ 2025-05-30T09:07:34,613 # Package would be ignored # 2025-05-30T09:07:34,613 ############################ 2025-05-30T09:07:34,614 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome' as an importable package[^1], 2025-05-30T09:07:34,614 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,615 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,615 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome' is explicitly added 2025-05-30T09:07:34,616 to the `packages` configuration field. 2025-05-30T09:07:34,617 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,618 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,619 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,620 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,621 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome' to be distributed and are 2025-05-30T09:07:34,622 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome' via 2025-05-30T09:07:34,623 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,623 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,624 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,625 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,628 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,629 even if it does not contain any `.py` files. 2025-05-30T09:07:34,630 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,630 directory, all directories are treated like packages. 2025-05-30T09:07:34,631 ******************************************************************************** 2025-05-30T09:07:34,632 !! 2025-05-30T09:07:34,633 check.warn(importable) 2025-05-30T09:07:34,633 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is absent from the `packages` configuration. 2025-05-30T09:07:34,634 !! 2025-05-30T09:07:34,635 ******************************************************************************** 2025-05-30T09:07:34,635 ############################ 2025-05-30T09:07:34,636 # Package would be ignored # 2025-05-30T09:07:34,637 ############################ 2025-05-30T09:07:34,637 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' as an importable package[^1], 2025-05-30T09:07:34,638 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,639 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,640 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is explicitly added 2025-05-30T09:07:34,641 to the `packages` configuration field. 2025-05-30T09:07:34,642 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,642 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,643 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,643 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,645 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' to be distributed and are 2025-05-30T09:07:34,646 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' via 2025-05-30T09:07:34,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,646 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,647 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,648 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,651 even if it does not contain any `.py` files. 2025-05-30T09:07:34,651 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,652 directory, all directories are treated like packages. 2025-05-30T09:07:34,652 ******************************************************************************** 2025-05-30T09:07:34,653 !! 2025-05-30T09:07:34,654 check.warn(importable) 2025-05-30T09:07:34,655 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is absent from the `packages` configuration. 2025-05-30T09:07:34,655 !! 2025-05-30T09:07:34,657 ******************************************************************************** 2025-05-30T09:07:34,657 ############################ 2025-05-30T09:07:34,658 # Package would be ignored # 2025-05-30T09:07:34,659 ############################ 2025-05-30T09:07:34,659 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' as an importable package[^1], 2025-05-30T09:07:34,660 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,661 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,662 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is explicitly added 2025-05-30T09:07:34,662 to the `packages` configuration field. 2025-05-30T09:07:34,663 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,664 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,665 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,668 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' to be distributed and are 2025-05-30T09:07:34,668 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' via 2025-05-30T09:07:34,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,670 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,670 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,671 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,672 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,673 even if it does not contain any `.py` files. 2025-05-30T09:07:34,674 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,674 directory, all directories are treated like packages. 2025-05-30T09:07:34,675 ******************************************************************************** 2025-05-30T09:07:34,675 !! 2025-05-30T09:07:34,676 check.warn(importable) 2025-05-30T09:07:34,676 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is absent from the `packages` configuration. 2025-05-30T09:07:34,677 !! 2025-05-30T09:07:34,677 ******************************************************************************** 2025-05-30T09:07:34,678 ############################ 2025-05-30T09:07:34,678 # Package would be ignored # 2025-05-30T09:07:34,679 ############################ 2025-05-30T09:07:34,679 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' as an importable package[^1], 2025-05-30T09:07:34,680 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,681 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,681 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is explicitly added 2025-05-30T09:07:34,682 to the `packages` configuration field. 2025-05-30T09:07:34,683 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,684 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,685 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,687 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' to be distributed and are 2025-05-30T09:07:34,688 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' via 2025-05-30T09:07:34,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,689 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,690 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,693 even if it does not contain any `.py` files. 2025-05-30T09:07:34,694 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,695 directory, all directories are treated like packages. 2025-05-30T09:07:34,695 ******************************************************************************** 2025-05-30T09:07:34,697 !! 2025-05-30T09:07:34,697 check.warn(importable) 2025-05-30T09:07:34,698 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is absent from the `packages` configuration. 2025-05-30T09:07:34,698 !! 2025-05-30T09:07:34,699 ******************************************************************************** 2025-05-30T09:07:34,699 ############################ 2025-05-30T09:07:34,700 # Package would be ignored # 2025-05-30T09:07:34,700 ############################ 2025-05-30T09:07:34,701 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' as an importable package[^1], 2025-05-30T09:07:34,701 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,702 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,703 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is explicitly added 2025-05-30T09:07:34,703 to the `packages` configuration field. 2025-05-30T09:07:34,704 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,705 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,706 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,708 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' to be distributed and are 2025-05-30T09:07:34,708 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' via 2025-05-30T09:07:34,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,710 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,711 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,715 even if it does not contain any `.py` files. 2025-05-30T09:07:34,715 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,716 directory, all directories are treated like packages. 2025-05-30T09:07:34,716 ******************************************************************************** 2025-05-30T09:07:34,717 !! 2025-05-30T09:07:34,718 check.warn(importable) 2025-05-30T09:07:34,719 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is absent from the `packages` configuration. 2025-05-30T09:07:34,719 !! 2025-05-30T09:07:34,720 ******************************************************************************** 2025-05-30T09:07:34,721 ############################ 2025-05-30T09:07:34,721 # Package would be ignored # 2025-05-30T09:07:34,722 ############################ 2025-05-30T09:07:34,722 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' as an importable package[^1], 2025-05-30T09:07:34,723 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,724 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,724 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is explicitly added 2025-05-30T09:07:34,725 to the `packages` configuration field. 2025-05-30T09:07:34,726 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,727 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,728 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,728 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,729 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' to be distributed and are 2025-05-30T09:07:34,730 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' via 2025-05-30T09:07:34,730 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,731 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,731 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,732 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,733 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,735 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,735 even if it does not contain any `.py` files. 2025-05-30T09:07:34,736 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,737 directory, all directories are treated like packages. 2025-05-30T09:07:34,737 ******************************************************************************** 2025-05-30T09:07:34,738 !! 2025-05-30T09:07:34,739 check.warn(importable) 2025-05-30T09:07:34,739 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is absent from the `packages` configuration. 2025-05-30T09:07:34,740 !! 2025-05-30T09:07:34,741 ******************************************************************************** 2025-05-30T09:07:34,742 ############################ 2025-05-30T09:07:34,743 # Package would be ignored # 2025-05-30T09:07:34,743 ############################ 2025-05-30T09:07:34,744 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' as an importable package[^1], 2025-05-30T09:07:34,744 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,745 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,746 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is explicitly added 2025-05-30T09:07:34,746 to the `packages` configuration field. 2025-05-30T09:07:34,747 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,748 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,748 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,749 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,752 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' to be distributed and are 2025-05-30T09:07:34,752 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' via 2025-05-30T09:07:34,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,754 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,755 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,757 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,758 even if it does not contain any `.py` files. 2025-05-30T09:07:34,758 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,758 directory, all directories are treated like packages. 2025-05-30T09:07:34,759 ******************************************************************************** 2025-05-30T09:07:34,760 !! 2025-05-30T09:07:34,760 check.warn(importable) 2025-05-30T09:07:34,760 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is absent from the `packages` configuration. 2025-05-30T09:07:34,761 !! 2025-05-30T09:07:34,762 ******************************************************************************** 2025-05-30T09:07:34,762 ############################ 2025-05-30T09:07:34,763 # Package would be ignored # 2025-05-30T09:07:34,763 ############################ 2025-05-30T09:07:34,763 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' as an importable package[^1], 2025-05-30T09:07:34,764 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,765 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,765 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is explicitly added 2025-05-30T09:07:34,766 to the `packages` configuration field. 2025-05-30T09:07:34,767 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,768 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,770 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,772 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' to be distributed and are 2025-05-30T09:07:34,773 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' via 2025-05-30T09:07:34,773 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,774 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,775 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,779 even if it does not contain any `.py` files. 2025-05-30T09:07:34,779 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,780 directory, all directories are treated like packages. 2025-05-30T09:07:34,780 ******************************************************************************** 2025-05-30T09:07:34,781 !! 2025-05-30T09:07:34,782 check.warn(importable) 2025-05-30T09:07:34,782 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is absent from the `packages` configuration. 2025-05-30T09:07:34,783 !! 2025-05-30T09:07:34,784 ******************************************************************************** 2025-05-30T09:07:34,785 ############################ 2025-05-30T09:07:34,785 # Package would be ignored # 2025-05-30T09:07:34,785 ############################ 2025-05-30T09:07:34,786 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' as an importable package[^1], 2025-05-30T09:07:34,786 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,787 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is explicitly added 2025-05-30T09:07:34,788 to the `packages` configuration field. 2025-05-30T09:07:34,789 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,789 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,790 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,791 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,792 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' to be distributed and are 2025-05-30T09:07:34,793 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' via 2025-05-30T09:07:34,793 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,794 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,794 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,796 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,797 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,799 even if it does not contain any `.py` files. 2025-05-30T09:07:34,800 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,800 directory, all directories are treated like packages. 2025-05-30T09:07:34,801 ******************************************************************************** 2025-05-30T09:07:34,802 !! 2025-05-30T09:07:34,803 check.warn(importable) 2025-05-30T09:07:34,803 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is absent from the `packages` configuration. 2025-05-30T09:07:34,803 !! 2025-05-30T09:07:34,804 ******************************************************************************** 2025-05-30T09:07:34,805 ############################ 2025-05-30T09:07:34,806 # Package would be ignored # 2025-05-30T09:07:34,806 ############################ 2025-05-30T09:07:34,807 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' as an importable package[^1], 2025-05-30T09:07:34,807 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,808 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,809 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is explicitly added 2025-05-30T09:07:34,810 to the `packages` configuration field. 2025-05-30T09:07:34,811 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,811 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,812 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,812 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,813 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,814 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' to be distributed and are 2025-05-30T09:07:34,814 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' via 2025-05-30T09:07:34,815 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,815 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,816 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,816 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,819 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,819 even if it does not contain any `.py` files. 2025-05-30T09:07:34,819 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,820 directory, all directories are treated like packages. 2025-05-30T09:07:34,820 ******************************************************************************** 2025-05-30T09:07:34,821 !! 2025-05-30T09:07:34,822 check.warn(importable) 2025-05-30T09:07:34,822 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is absent from the `packages` configuration. 2025-05-30T09:07:34,823 !! 2025-05-30T09:07:34,824 ******************************************************************************** 2025-05-30T09:07:34,824 ############################ 2025-05-30T09:07:34,825 # Package would be ignored # 2025-05-30T09:07:34,825 ############################ 2025-05-30T09:07:34,826 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' as an importable package[^1], 2025-05-30T09:07:34,826 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,827 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,828 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is explicitly added 2025-05-30T09:07:34,828 to the `packages` configuration field. 2025-05-30T09:07:34,829 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,830 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,831 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,833 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' to be distributed and are 2025-05-30T09:07:34,834 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' via 2025-05-30T09:07:34,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,835 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,836 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,837 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,838 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,839 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,839 even if it does not contain any `.py` files. 2025-05-30T09:07:34,840 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,840 directory, all directories are treated like packages. 2025-05-30T09:07:34,841 ******************************************************************************** 2025-05-30T09:07:34,842 !! 2025-05-30T09:07:34,842 check.warn(importable) 2025-05-30T09:07:34,843 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is absent from the `packages` configuration. 2025-05-30T09:07:34,843 !! 2025-05-30T09:07:34,844 ******************************************************************************** 2025-05-30T09:07:34,845 ############################ 2025-05-30T09:07:34,845 # Package would be ignored # 2025-05-30T09:07:34,846 ############################ 2025-05-30T09:07:34,846 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' as an importable package[^1], 2025-05-30T09:07:34,847 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,848 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,849 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is explicitly added 2025-05-30T09:07:34,850 to the `packages` configuration field. 2025-05-30T09:07:34,851 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,852 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,853 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,854 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,855 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' to be distributed and are 2025-05-30T09:07:34,856 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' via 2025-05-30T09:07:34,856 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,857 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,858 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,861 even if it does not contain any `.py` files. 2025-05-30T09:07:34,862 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,863 directory, all directories are treated like packages. 2025-05-30T09:07:34,863 ******************************************************************************** 2025-05-30T09:07:34,864 !! 2025-05-30T09:07:34,865 check.warn(importable) 2025-05-30T09:07:34,865 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is absent from the `packages` configuration. 2025-05-30T09:07:34,866 !! 2025-05-30T09:07:34,867 ******************************************************************************** 2025-05-30T09:07:34,868 ############################ 2025-05-30T09:07:34,868 # Package would be ignored # 2025-05-30T09:07:34,868 ############################ 2025-05-30T09:07:34,869 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' as an importable package[^1], 2025-05-30T09:07:34,869 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,870 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,871 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is explicitly added 2025-05-30T09:07:34,871 to the `packages` configuration field. 2025-05-30T09:07:34,872 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,873 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,874 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,876 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' to be distributed and are 2025-05-30T09:07:34,876 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' via 2025-05-30T09:07:34,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,878 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,878 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,879 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,881 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,882 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,883 even if it does not contain any `.py` files. 2025-05-30T09:07:34,883 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,884 directory, all directories are treated like packages. 2025-05-30T09:07:34,885 ******************************************************************************** 2025-05-30T09:07:34,886 !! 2025-05-30T09:07:34,886 check.warn(importable) 2025-05-30T09:07:34,887 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is absent from the `packages` configuration. 2025-05-30T09:07:34,887 !! 2025-05-30T09:07:34,888 ******************************************************************************** 2025-05-30T09:07:34,889 ############################ 2025-05-30T09:07:34,889 # Package would be ignored # 2025-05-30T09:07:34,890 ############################ 2025-05-30T09:07:34,890 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' as an importable package[^1], 2025-05-30T09:07:34,891 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,892 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,893 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is explicitly added 2025-05-30T09:07:34,893 to the `packages` configuration field. 2025-05-30T09:07:34,894 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,896 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,896 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,898 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' to be distributed and are 2025-05-30T09:07:34,899 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' via 2025-05-30T09:07:34,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,900 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,901 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,903 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,904 even if it does not contain any `.py` files. 2025-05-30T09:07:34,904 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,905 directory, all directories are treated like packages. 2025-05-30T09:07:34,905 ******************************************************************************** 2025-05-30T09:07:34,906 !! 2025-05-30T09:07:34,907 check.warn(importable) 2025-05-30T09:07:34,907 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is absent from the `packages` configuration. 2025-05-30T09:07:34,908 !! 2025-05-30T09:07:34,909 ******************************************************************************** 2025-05-30T09:07:34,909 ############################ 2025-05-30T09:07:34,910 # Package would be ignored # 2025-05-30T09:07:34,910 ############################ 2025-05-30T09:07:34,911 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' as an importable package[^1], 2025-05-30T09:07:34,911 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,913 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,913 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is explicitly added 2025-05-30T09:07:34,914 to the `packages` configuration field. 2025-05-30T09:07:34,915 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,915 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,916 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,917 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,918 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,919 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' to be distributed and are 2025-05-30T09:07:34,920 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' via 2025-05-30T09:07:34,920 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,921 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,921 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,922 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,923 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,925 even if it does not contain any `.py` files. 2025-05-30T09:07:34,926 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,927 directory, all directories are treated like packages. 2025-05-30T09:07:34,927 ******************************************************************************** 2025-05-30T09:07:34,928 !! 2025-05-30T09:07:34,929 check.warn(importable) 2025-05-30T09:07:34,929 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is absent from the `packages` configuration. 2025-05-30T09:07:34,930 !! 2025-05-30T09:07:34,931 ******************************************************************************** 2025-05-30T09:07:34,932 ############################ 2025-05-30T09:07:34,933 # Package would be ignored # 2025-05-30T09:07:34,933 ############################ 2025-05-30T09:07:34,934 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' as an importable package[^1], 2025-05-30T09:07:34,934 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,935 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,936 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is explicitly added 2025-05-30T09:07:34,936 to the `packages` configuration field. 2025-05-30T09:07:34,938 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,939 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,940 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,941 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,942 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' to be distributed and are 2025-05-30T09:07:34,943 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' via 2025-05-30T09:07:34,944 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,944 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,945 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,946 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,947 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,948 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,949 even if it does not contain any `.py` files. 2025-05-30T09:07:34,949 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,950 directory, all directories are treated like packages. 2025-05-30T09:07:34,950 ******************************************************************************** 2025-05-30T09:07:34,951 !! 2025-05-30T09:07:34,952 check.warn(importable) 2025-05-30T09:07:34,953 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is absent from the `packages` configuration. 2025-05-30T09:07:34,953 !! 2025-05-30T09:07:34,954 ******************************************************************************** 2025-05-30T09:07:34,955 ############################ 2025-05-30T09:07:34,955 # Package would be ignored # 2025-05-30T09:07:34,955 ############################ 2025-05-30T09:07:34,956 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' as an importable package[^1], 2025-05-30T09:07:34,956 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,957 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,957 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is explicitly added 2025-05-30T09:07:34,958 to the `packages` configuration field. 2025-05-30T09:07:34,958 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,959 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,960 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,962 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' to be distributed and are 2025-05-30T09:07:34,962 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' via 2025-05-30T09:07:34,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,964 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,965 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,969 even if it does not contain any `.py` files. 2025-05-30T09:07:34,970 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,970 directory, all directories are treated like packages. 2025-05-30T09:07:34,971 ******************************************************************************** 2025-05-30T09:07:34,972 !! 2025-05-30T09:07:34,972 check.warn(importable) 2025-05-30T09:07:34,973 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is absent from the `packages` configuration. 2025-05-30T09:07:34,973 !! 2025-05-30T09:07:34,974 ******************************************************************************** 2025-05-30T09:07:34,975 ############################ 2025-05-30T09:07:34,975 # Package would be ignored # 2025-05-30T09:07:34,976 ############################ 2025-05-30T09:07:34,976 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' as an importable package[^1], 2025-05-30T09:07:34,977 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,978 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:34,979 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is explicitly added 2025-05-30T09:07:34,979 to the `packages` configuration field. 2025-05-30T09:07:34,980 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:34,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:34,982 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:34,983 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:34,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:34,984 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' to be distributed and are 2025-05-30T09:07:34,985 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' via 2025-05-30T09:07:34,985 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:34,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:34,986 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:34,987 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:34,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:34,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:34,990 even if it does not contain any `.py` files. 2025-05-30T09:07:34,991 On the other hand, currently there is no concept of package data 2025-05-30T09:07:34,991 directory, all directories are treated like packages. 2025-05-30T09:07:34,992 ******************************************************************************** 2025-05-30T09:07:34,993 !! 2025-05-30T09:07:34,993 check.warn(importable) 2025-05-30T09:07:34,994 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is absent from the `packages` configuration. 2025-05-30T09:07:34,994 !! 2025-05-30T09:07:34,996 ******************************************************************************** 2025-05-30T09:07:34,996 ############################ 2025-05-30T09:07:34,997 # Package would be ignored # 2025-05-30T09:07:34,997 ############################ 2025-05-30T09:07:34,998 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' as an importable package[^1], 2025-05-30T09:07:34,998 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:34,999 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,000 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is explicitly added 2025-05-30T09:07:35,001 to the `packages` configuration field. 2025-05-30T09:07:35,002 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,003 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,005 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,007 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' to be distributed and are 2025-05-30T09:07:35,008 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' via 2025-05-30T09:07:35,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,010 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,011 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,014 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,014 even if it does not contain any `.py` files. 2025-05-30T09:07:35,015 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,015 directory, all directories are treated like packages. 2025-05-30T09:07:35,016 ******************************************************************************** 2025-05-30T09:07:35,017 !! 2025-05-30T09:07:35,017 check.warn(importable) 2025-05-30T09:07:35,018 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is absent from the `packages` configuration. 2025-05-30T09:07:35,018 !! 2025-05-30T09:07:35,019 ******************************************************************************** 2025-05-30T09:07:35,019 ############################ 2025-05-30T09:07:35,020 # Package would be ignored # 2025-05-30T09:07:35,020 ############################ 2025-05-30T09:07:35,021 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' as an importable package[^1], 2025-05-30T09:07:35,021 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,022 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,023 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is explicitly added 2025-05-30T09:07:35,023 to the `packages` configuration field. 2025-05-30T09:07:35,025 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,025 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,026 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,027 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,028 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,029 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' to be distributed and are 2025-05-30T09:07:35,029 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' via 2025-05-30T09:07:35,030 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,030 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,031 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,032 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,033 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,034 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,035 even if it does not contain any `.py` files. 2025-05-30T09:07:35,035 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,036 directory, all directories are treated like packages. 2025-05-30T09:07:35,036 ******************************************************************************** 2025-05-30T09:07:35,037 !! 2025-05-30T09:07:35,038 check.warn(importable) 2025-05-30T09:07:35,038 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is absent from the `packages` configuration. 2025-05-30T09:07:35,039 !! 2025-05-30T09:07:35,040 ******************************************************************************** 2025-05-30T09:07:35,040 ############################ 2025-05-30T09:07:35,041 # Package would be ignored # 2025-05-30T09:07:35,041 ############################ 2025-05-30T09:07:35,041 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' as an importable package[^1], 2025-05-30T09:07:35,042 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,042 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,043 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is explicitly added 2025-05-30T09:07:35,043 to the `packages` configuration field. 2025-05-30T09:07:35,044 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,045 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,046 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,047 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' to be distributed and are 2025-05-30T09:07:35,047 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' via 2025-05-30T09:07:35,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,049 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,050 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,054 even if it does not contain any `.py` files. 2025-05-30T09:07:35,054 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,055 directory, all directories are treated like packages. 2025-05-30T09:07:35,055 ******************************************************************************** 2025-05-30T09:07:35,056 !! 2025-05-30T09:07:35,057 check.warn(importable) 2025-05-30T09:07:35,058 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is absent from the `packages` configuration. 2025-05-30T09:07:35,058 !! 2025-05-30T09:07:35,059 ******************************************************************************** 2025-05-30T09:07:35,060 ############################ 2025-05-30T09:07:35,060 # Package would be ignored # 2025-05-30T09:07:35,061 ############################ 2025-05-30T09:07:35,061 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' as an importable package[^1], 2025-05-30T09:07:35,062 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,063 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,063 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is explicitly added 2025-05-30T09:07:35,064 to the `packages` configuration field. 2025-05-30T09:07:35,065 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,066 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,068 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,068 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,069 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' to be distributed and are 2025-05-30T09:07:35,070 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' via 2025-05-30T09:07:35,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,071 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,072 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,073 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,075 even if it does not contain any `.py` files. 2025-05-30T09:07:35,075 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,076 directory, all directories are treated like packages. 2025-05-30T09:07:35,076 ******************************************************************************** 2025-05-30T09:07:35,077 !! 2025-05-30T09:07:35,078 check.warn(importable) 2025-05-30T09:07:35,078 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is absent from the `packages` configuration. 2025-05-30T09:07:35,079 !! 2025-05-30T09:07:35,080 ******************************************************************************** 2025-05-30T09:07:35,080 ############################ 2025-05-30T09:07:35,081 # Package would be ignored # 2025-05-30T09:07:35,081 ############################ 2025-05-30T09:07:35,084 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' as an importable package[^1], 2025-05-30T09:07:35,091 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,097 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,097 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is explicitly added 2025-05-30T09:07:35,098 to the `packages` configuration field. 2025-05-30T09:07:35,099 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,100 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,102 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,108 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' to be distributed and are 2025-05-30T09:07:35,109 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' via 2025-05-30T09:07:35,109 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,110 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,111 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,112 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,113 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,114 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,115 even if it does not contain any `.py` files. 2025-05-30T09:07:35,115 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,116 directory, all directories are treated like packages. 2025-05-30T09:07:35,116 ******************************************************************************** 2025-05-30T09:07:35,117 !! 2025-05-30T09:07:35,118 check.warn(importable) 2025-05-30T09:07:35,118 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is absent from the `packages` configuration. 2025-05-30T09:07:35,119 !! 2025-05-30T09:07:35,120 ******************************************************************************** 2025-05-30T09:07:35,120 ############################ 2025-05-30T09:07:35,121 # Package would be ignored # 2025-05-30T09:07:35,121 ############################ 2025-05-30T09:07:35,121 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' as an importable package[^1], 2025-05-30T09:07:35,122 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,123 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,124 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is explicitly added 2025-05-30T09:07:35,124 to the `packages` configuration field. 2025-05-30T09:07:35,125 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,126 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,127 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,128 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,129 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' to be distributed and are 2025-05-30T09:07:35,130 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' via 2025-05-30T09:07:35,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,132 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,133 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,134 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,136 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,136 even if it does not contain any `.py` files. 2025-05-30T09:07:35,137 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,137 directory, all directories are treated like packages. 2025-05-30T09:07:35,138 ******************************************************************************** 2025-05-30T09:07:35,139 !! 2025-05-30T09:07:35,140 check.warn(importable) 2025-05-30T09:07:35,140 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is absent from the `packages` configuration. 2025-05-30T09:07:35,141 !! 2025-05-30T09:07:35,142 ******************************************************************************** 2025-05-30T09:07:35,143 ############################ 2025-05-30T09:07:35,144 # Package would be ignored # 2025-05-30T09:07:35,144 ############################ 2025-05-30T09:07:35,145 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' as an importable package[^1], 2025-05-30T09:07:35,145 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,146 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,146 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is explicitly added 2025-05-30T09:07:35,147 to the `packages` configuration field. 2025-05-30T09:07:35,148 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,149 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,151 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,153 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' to be distributed and are 2025-05-30T09:07:35,153 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' via 2025-05-30T09:07:35,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,155 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,156 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,159 even if it does not contain any `.py` files. 2025-05-30T09:07:35,160 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,161 directory, all directories are treated like packages. 2025-05-30T09:07:35,161 ******************************************************************************** 2025-05-30T09:07:35,162 !! 2025-05-30T09:07:35,163 check.warn(importable) 2025-05-30T09:07:35,164 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is absent from the `packages` configuration. 2025-05-30T09:07:35,164 !! 2025-05-30T09:07:35,165 ******************************************************************************** 2025-05-30T09:07:35,166 ############################ 2025-05-30T09:07:35,167 # Package would be ignored # 2025-05-30T09:07:35,167 ############################ 2025-05-30T09:07:35,168 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' as an importable package[^1], 2025-05-30T09:07:35,169 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,170 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,171 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is explicitly added 2025-05-30T09:07:35,171 to the `packages` configuration field. 2025-05-30T09:07:35,173 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,174 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,176 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,177 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,179 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' to be distributed and are 2025-05-30T09:07:35,180 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' via 2025-05-30T09:07:35,180 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,181 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,183 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,184 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,186 even if it does not contain any `.py` files. 2025-05-30T09:07:35,187 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,187 directory, all directories are treated like packages. 2025-05-30T09:07:35,188 ******************************************************************************** 2025-05-30T09:07:35,189 !! 2025-05-30T09:07:35,190 check.warn(importable) 2025-05-30T09:07:35,190 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is absent from the `packages` configuration. 2025-05-30T09:07:35,191 !! 2025-05-30T09:07:35,192 ******************************************************************************** 2025-05-30T09:07:35,192 ############################ 2025-05-30T09:07:35,193 # Package would be ignored # 2025-05-30T09:07:35,193 ############################ 2025-05-30T09:07:35,194 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' as an importable package[^1], 2025-05-30T09:07:35,195 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,196 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,196 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is explicitly added 2025-05-30T09:07:35,197 to the `packages` configuration field. 2025-05-30T09:07:35,198 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,199 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,200 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,201 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,202 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,203 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' to be distributed and are 2025-05-30T09:07:35,203 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' via 2025-05-30T09:07:35,204 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,205 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,206 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,208 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,209 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,210 even if it does not contain any `.py` files. 2025-05-30T09:07:35,210 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,211 directory, all directories are treated like packages. 2025-05-30T09:07:35,211 ******************************************************************************** 2025-05-30T09:07:35,212 !! 2025-05-30T09:07:35,212 check.warn(importable) 2025-05-30T09:07:35,213 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is absent from the `packages` configuration. 2025-05-30T09:07:35,213 !! 2025-05-30T09:07:35,215 ******************************************************************************** 2025-05-30T09:07:35,215 ############################ 2025-05-30T09:07:35,216 # Package would be ignored # 2025-05-30T09:07:35,216 ############################ 2025-05-30T09:07:35,217 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' as an importable package[^1], 2025-05-30T09:07:35,217 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,218 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,219 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is explicitly added 2025-05-30T09:07:35,219 to the `packages` configuration field. 2025-05-30T09:07:35,220 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,221 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,223 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,225 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' to be distributed and are 2025-05-30T09:07:35,225 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' via 2025-05-30T09:07:35,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,227 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,228 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,232 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,232 even if it does not contain any `.py` files. 2025-05-30T09:07:35,233 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,234 directory, all directories are treated like packages. 2025-05-30T09:07:35,235 ******************************************************************************** 2025-05-30T09:07:35,236 !! 2025-05-30T09:07:35,237 check.warn(importable) 2025-05-30T09:07:35,237 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is absent from the `packages` configuration. 2025-05-30T09:07:35,238 !! 2025-05-30T09:07:35,239 ******************************************************************************** 2025-05-30T09:07:35,240 ############################ 2025-05-30T09:07:35,240 # Package would be ignored # 2025-05-30T09:07:35,241 ############################ 2025-05-30T09:07:35,241 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' as an importable package[^1], 2025-05-30T09:07:35,242 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,243 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,243 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is explicitly added 2025-05-30T09:07:35,244 to the `packages` configuration field. 2025-05-30T09:07:35,245 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,246 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,247 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,249 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' to be distributed and are 2025-05-30T09:07:35,250 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' via 2025-05-30T09:07:35,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,251 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,251 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,253 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,255 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,256 even if it does not contain any `.py` files. 2025-05-30T09:07:35,256 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,257 directory, all directories are treated like packages. 2025-05-30T09:07:35,257 ******************************************************************************** 2025-05-30T09:07:35,259 !! 2025-05-30T09:07:35,259 check.warn(importable) 2025-05-30T09:07:35,260 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is absent from the `packages` configuration. 2025-05-30T09:07:35,260 !! 2025-05-30T09:07:35,261 ******************************************************************************** 2025-05-30T09:07:35,262 ############################ 2025-05-30T09:07:35,263 # Package would be ignored # 2025-05-30T09:07:35,263 ############################ 2025-05-30T09:07:35,264 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' as an importable package[^1], 2025-05-30T09:07:35,265 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,266 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,267 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is explicitly added 2025-05-30T09:07:35,267 to the `packages` configuration field. 2025-05-30T09:07:35,268 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,269 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,270 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,271 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,272 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' to be distributed and are 2025-05-30T09:07:35,273 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' via 2025-05-30T09:07:35,273 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,274 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,274 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,275 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,276 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,278 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,278 even if it does not contain any `.py` files. 2025-05-30T09:07:35,279 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,279 directory, all directories are treated like packages. 2025-05-30T09:07:35,280 ******************************************************************************** 2025-05-30T09:07:35,281 !! 2025-05-30T09:07:35,281 check.warn(importable) 2025-05-30T09:07:35,281 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is absent from the `packages` configuration. 2025-05-30T09:07:35,282 !! 2025-05-30T09:07:35,283 ******************************************************************************** 2025-05-30T09:07:35,283 ############################ 2025-05-30T09:07:35,284 # Package would be ignored # 2025-05-30T09:07:35,284 ############################ 2025-05-30T09:07:35,285 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' as an importable package[^1], 2025-05-30T09:07:35,285 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,286 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,287 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is explicitly added 2025-05-30T09:07:35,287 to the `packages` configuration field. 2025-05-30T09:07:35,288 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,289 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,290 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,291 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,293 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' to be distributed and are 2025-05-30T09:07:35,293 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' via 2025-05-30T09:07:35,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,294 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,295 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,296 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,299 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,299 even if it does not contain any `.py` files. 2025-05-30T09:07:35,300 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,300 directory, all directories are treated like packages. 2025-05-30T09:07:35,300 ******************************************************************************** 2025-05-30T09:07:35,301 !! 2025-05-30T09:07:35,302 check.warn(importable) 2025-05-30T09:07:35,302 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is absent from the `packages` configuration. 2025-05-30T09:07:35,303 !! 2025-05-30T09:07:35,304 ******************************************************************************** 2025-05-30T09:07:35,304 ############################ 2025-05-30T09:07:35,305 # Package would be ignored # 2025-05-30T09:07:35,305 ############################ 2025-05-30T09:07:35,305 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' as an importable package[^1], 2025-05-30T09:07:35,306 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,307 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,308 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is explicitly added 2025-05-30T09:07:35,308 to the `packages` configuration field. 2025-05-30T09:07:35,309 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,310 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,310 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,311 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,313 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' to be distributed and are 2025-05-30T09:07:35,314 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' via 2025-05-30T09:07:35,315 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,316 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,317 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,318 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,320 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,320 even if it does not contain any `.py` files. 2025-05-30T09:07:35,321 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,322 directory, all directories are treated like packages. 2025-05-30T09:07:35,322 ******************************************************************************** 2025-05-30T09:07:35,323 !! 2025-05-30T09:07:35,324 check.warn(importable) 2025-05-30T09:07:35,324 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is absent from the `packages` configuration. 2025-05-30T09:07:35,325 !! 2025-05-30T09:07:35,326 ******************************************************************************** 2025-05-30T09:07:35,326 ############################ 2025-05-30T09:07:35,327 # Package would be ignored # 2025-05-30T09:07:35,328 ############################ 2025-05-30T09:07:35,328 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' as an importable package[^1], 2025-05-30T09:07:35,329 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,330 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,330 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is explicitly added 2025-05-30T09:07:35,331 to the `packages` configuration field. 2025-05-30T09:07:35,332 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,332 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,333 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,333 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,336 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' to be distributed and are 2025-05-30T09:07:35,336 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' via 2025-05-30T09:07:35,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,337 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,339 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,342 even if it does not contain any `.py` files. 2025-05-30T09:07:35,342 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,343 directory, all directories are treated like packages. 2025-05-30T09:07:35,343 ******************************************************************************** 2025-05-30T09:07:35,345 !! 2025-05-30T09:07:35,345 check.warn(importable) 2025-05-30T09:07:35,346 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is absent from the `packages` configuration. 2025-05-30T09:07:35,346 !! 2025-05-30T09:07:35,348 ******************************************************************************** 2025-05-30T09:07:35,348 ############################ 2025-05-30T09:07:35,349 # Package would be ignored # 2025-05-30T09:07:35,349 ############################ 2025-05-30T09:07:35,350 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' as an importable package[^1], 2025-05-30T09:07:35,351 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,352 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,352 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is explicitly added 2025-05-30T09:07:35,353 to the `packages` configuration field. 2025-05-30T09:07:35,354 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,354 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,355 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,356 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,358 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' to be distributed and are 2025-05-30T09:07:35,359 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' via 2025-05-30T09:07:35,359 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,360 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,361 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,362 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,364 even if it does not contain any `.py` files. 2025-05-30T09:07:35,365 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,365 directory, all directories are treated like packages. 2025-05-30T09:07:35,365 ******************************************************************************** 2025-05-30T09:07:35,367 !! 2025-05-30T09:07:35,367 check.warn(importable) 2025-05-30T09:07:35,368 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is absent from the `packages` configuration. 2025-05-30T09:07:35,368 !! 2025-05-30T09:07:35,370 ******************************************************************************** 2025-05-30T09:07:35,370 ############################ 2025-05-30T09:07:35,371 # Package would be ignored # 2025-05-30T09:07:35,371 ############################ 2025-05-30T09:07:35,372 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' as an importable package[^1], 2025-05-30T09:07:35,372 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,373 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,374 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is explicitly added 2025-05-30T09:07:35,375 to the `packages` configuration field. 2025-05-30T09:07:35,376 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,377 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,378 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,381 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' to be distributed and are 2025-05-30T09:07:35,381 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' via 2025-05-30T09:07:35,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,383 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,384 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,387 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,388 even if it does not contain any `.py` files. 2025-05-30T09:07:35,388 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,389 directory, all directories are treated like packages. 2025-05-30T09:07:35,389 ******************************************************************************** 2025-05-30T09:07:35,390 !! 2025-05-30T09:07:35,391 check.warn(importable) 2025-05-30T09:07:35,391 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts' is absent from the `packages` configuration. 2025-05-30T09:07:35,392 !! 2025-05-30T09:07:35,393 ******************************************************************************** 2025-05-30T09:07:35,393 ############################ 2025-05-30T09:07:35,394 # Package would be ignored # 2025-05-30T09:07:35,394 ############################ 2025-05-30T09:07:35,395 Python recognizes 'SigProfilerMatrixGenerator.scripts' as an importable package[^1], 2025-05-30T09:07:35,395 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,396 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,397 package, please make sure that 'SigProfilerMatrixGenerator.scripts' is explicitly added 2025-05-30T09:07:35,397 to the `packages` configuration field. 2025-05-30T09:07:35,398 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,399 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,400 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,402 If you don't want 'SigProfilerMatrixGenerator.scripts' to be distributed and are 2025-05-30T09:07:35,403 already explicitly excluding 'SigProfilerMatrixGenerator.scripts' via 2025-05-30T09:07:35,404 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,404 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,405 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,406 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,409 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,409 even if it does not contain any `.py` files. 2025-05-30T09:07:35,410 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,410 directory, all directories are treated like packages. 2025-05-30T09:07:35,411 ******************************************************************************** 2025-05-30T09:07:35,412 !! 2025-05-30T09:07:35,412 check.warn(importable) 2025-05-30T09:07:35,413 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts.Benchmark' is absent from the `packages` configuration. 2025-05-30T09:07:35,413 !! 2025-05-30T09:07:35,414 ******************************************************************************** 2025-05-30T09:07:35,415 ############################ 2025-05-30T09:07:35,415 # Package would be ignored # 2025-05-30T09:07:35,416 ############################ 2025-05-30T09:07:35,416 Python recognizes 'SigProfilerMatrixGenerator.scripts.Benchmark' as an importable package[^1], 2025-05-30T09:07:35,417 but it is absent from setuptools' `packages` configuration. 2025-05-30T09:07:35,418 This leads to an ambiguous overall configuration. If you want to distribute this 2025-05-30T09:07:35,419 package, please make sure that 'SigProfilerMatrixGenerator.scripts.Benchmark' is explicitly added 2025-05-30T09:07:35,419 to the `packages` configuration field. 2025-05-30T09:07:35,420 Alternatively, you can also rely on setuptools' discovery methods 2025-05-30T09:07:35,421 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-05-30T09:07:35,421 instead of `find_packages(...)`/`find:`). 2025-05-30T09:07:35,423 You can read more about "package discovery" on setuptools documentation page: 2025-05-30T09:07:35,424 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-05-30T09:07:35,425 If you don't want 'SigProfilerMatrixGenerator.scripts.Benchmark' to be distributed and are 2025-05-30T09:07:35,425 already explicitly excluding 'SigProfilerMatrixGenerator.scripts.Benchmark' via 2025-05-30T09:07:35,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-05-30T09:07:35,426 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-05-30T09:07:35,427 combination with a more fine grained `package-data` configuration. 2025-05-30T09:07:35,428 You can read more about "package data files" on setuptools documentation page: 2025-05-30T09:07:35,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-05-30T09:07:35,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-05-30T09:07:35,431 even if it does not contain any `.py` files. 2025-05-30T09:07:35,432 On the other hand, currently there is no concept of package data 2025-05-30T09:07:35,433 directory, all directories are treated like packages. 2025-05-30T09:07:35,433 ******************************************************************************** 2025-05-30T09:07:35,434 !! 2025-05-30T09:07:35,435 check.warn(importable) 2025-05-30T09:07:35,435 creating build/lib/SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:35,436 copying SigProfilerMatrixGenerator/controllers/__init__.py -> build/lib/SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:35,436 copying SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/lib/SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:35,437 creating build/lib/SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:35,437 copying SigProfilerMatrixGenerator/references/CNV/.DS_Store -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:35,438 copying SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:35,438 copying SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:35,439 creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:35,439 copying SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:35,440 copying SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:35,441 creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_output 2025-05-30T09:07:35,441 copying SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_output 2025-05-30T09:07:35,442 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,442 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,443 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,444 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,444 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,445 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,445 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,445 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,446 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,447 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,447 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,448 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,448 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,449 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,449 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,450 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,450 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,451 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,451 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,452 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,452 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,453 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,454 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,454 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,454 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,455 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,455 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,456 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,456 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,457 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,457 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,458 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,458 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,459 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,459 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,460 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,461 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,461 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,462 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,462 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,463 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,463 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,464 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,464 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,465 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,465 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,466 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,466 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,467 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,467 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,468 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:35,468 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,469 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,470 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,470 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,471 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,471 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,472 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,472 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,473 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,473 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,474 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,474 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,475 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,475 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,476 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,476 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,477 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,477 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,478 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,478 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,479 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,479 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,480 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,481 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,481 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,482 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,483 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,484 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,484 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,485 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,486 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,486 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,487 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,487 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,487 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,488 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,488 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,489 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,489 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,490 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,490 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,491 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,491 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,492 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,492 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,493 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,494 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,494 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,495 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,495 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,496 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:35,496 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,497 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,498 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,498 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,537 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,540 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:35,543 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,545 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,550 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,554 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,557 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,560 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,563 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,567 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,569 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,578 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,585 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,588 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,591 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,593 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,596 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,599 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,601 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,603 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,608 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,612 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,614 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,617 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,620 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,623 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,625 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,633 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,640 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,642 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,645 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,648 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,650 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,653 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,656 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,659 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,664 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,669 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,671 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,674 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,677 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,680 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,682 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,689 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,695 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,698 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,701 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,704 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,706 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,709 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,711 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,714 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,719 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,723 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,726 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,729 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,734 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,737 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,740 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,749 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,758 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,762 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,767 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,772 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,776 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,780 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,783 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,786 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,793 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,798 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,800 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,803 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,807 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,811 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,813 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,825 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,833 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,836 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,838 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,841 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,843 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,845 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,847 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,850 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,854 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,859 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,861 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,864 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,867 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,870 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,873 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,881 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,889 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,891 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,893 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,896 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,901 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,904 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,907 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,909 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,913 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,916 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,918 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,927 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,936 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,939 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,942 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,944 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,947 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,949 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,951 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,953 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,957 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,959 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,962 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,964 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,966 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,972 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,974 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,976 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,979 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,986 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:35,992 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,000 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,010 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,012 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,015 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,017 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,019 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,023 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,027 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,031 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,035 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,055 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,071 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,090 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,117 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,120 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,122 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,125 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,128 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,131 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,133 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,137 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,140 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,143 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,147 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,151 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,155 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,158 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,161 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,164 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,168 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,171 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,177 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,184 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,193 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,203 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,206 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,209 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,212 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,215 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,219 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,224 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,229 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,232 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,250 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,263 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,282 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,307 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,310 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,313 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,316 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,319 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,322 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,326 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,331 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,335 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,338 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,342 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,346 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,349 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,352 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,355 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,358 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,361 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,366 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,372 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,381 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,422 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,426 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,429 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,432 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,436 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,440 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,445 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,450 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,454 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,466 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,478 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,497 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,514 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,517 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,519 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,521 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,524 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,527 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,530 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,534 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,537 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,540 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,544 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,548 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,551 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,554 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,558 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,561 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,569 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,577 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,584 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,592 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,595 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,597 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,600 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,603 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,607 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,611 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,615 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,619 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,640 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,656 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,676 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,697 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,701 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,703 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,706 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,709 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,713 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,716 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,720 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,724 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,727 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,731 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,734 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,738 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,741 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,745 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,748 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,751 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,758 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,765 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,772 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,781 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,784 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,787 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,790 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,793 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,796 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,800 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,805 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,809 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,825 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,840 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,861 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,881 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,883 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,886 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,889 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,892 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,895 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,899 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,902 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,906 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,910 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,914 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,917 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,921 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,924 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,926 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,930 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,933 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,939 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,945 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,950 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,956 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,959 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,962 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,965 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,968 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,972 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,976 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,981 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:36,985 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,002 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,018 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,033 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,045 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,047 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,049 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,051 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,054 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,056 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,059 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,063 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,066 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,074 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,136 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,147 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,168 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,171 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,174 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,177 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,180 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,184 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,189 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,193 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,198 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,216 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,245 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,263 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,281 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,284 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,286 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,290 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,292 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,296 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,299 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,302 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,306 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,310 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,313 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,316 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,320 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,323 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,326 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,329 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,332 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,337 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,344 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,347 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,350 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,354 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,375 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,377 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,381 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,384 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:37,386 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-05-30T09:07:37,388 copying SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-05-30T09:07:37,390 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-05-30T09:07:37,391 copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-05-30T09:07:37,855 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-05-30T09:07:37,856 copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-05-30T09:07:37,935 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-05-30T09:07:37,937 copying SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-05-30T09:07:38,483 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-05-30T09:07:38,484 copying SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-05-30T09:07:38,553 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:38,554 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:38,557 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:38,559 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:38,562 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-05-30T09:07:38,563 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-05-30T09:07:38,642 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-05-30T09:07:38,643 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-05-30T09:07:38,720 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-05-30T09:07:38,721 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-05-30T09:07:39,104 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-05-30T09:07:39,105 copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-05-30T09:07:40,027 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-05-30T09:07:40,030 copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-05-30T09:07:40,385 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-05-30T09:07:40,386 copying SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-05-30T09:07:40,402 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-05-30T09:07:40,403 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-05-30T09:07:40,406 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,407 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,427 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,456 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,475 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,480 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,488 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,496 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,508 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,520 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,525 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,537 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,552 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,559 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,562 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,568 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,578 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,586 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,593 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,600 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,610 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,620 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,626 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,634 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,637 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,645 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:40,648 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,650 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,658 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,669 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,686 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,691 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,699 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,705 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,714 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,724 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,729 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,738 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,753 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,763 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,767 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,773 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,783 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,793 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,800 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,808 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,817 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,825 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,833 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,840 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,842 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,850 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:40,853 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,855 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,864 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,874 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,885 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,895 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,898 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,913 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:40,922 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,923 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,928 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,932 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,935 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,939 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,942 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,946 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,949 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,954 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,958 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,961 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,967 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,972 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,975 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,979 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,982 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,986 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,990 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,994 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:40,998 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,001 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,005 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,009 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,013 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,017 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,021 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,025 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,028 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,032 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,036 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,040 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,044 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,048 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,052 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,058 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,062 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,066 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,070 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,075 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:41,079 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-05-30T09:07:41,080 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-05-30T09:07:41,083 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,084 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,091 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,101 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,107 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,120 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,126 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,132 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,138 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,145 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,149 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,155 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,164 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,175 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,182 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,190 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,200 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,209 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,223 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,229 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,237 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,240 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,246 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:41,249 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,250 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,258 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,269 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,274 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,280 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,288 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,296 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,303 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,312 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,319 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,326 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,335 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,348 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,356 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,366 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,376 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,386 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,399 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,406 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,413 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,425 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:41,428 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,429 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,439 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,456 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,463 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,471 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,478 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,486 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,494 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,502 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,506 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,512 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,522 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,539 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,547 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,558 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,573 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,582 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,598 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,606 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,616 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,618 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,629 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:41,631 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,633 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,641 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,647 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,651 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,656 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,660 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,665 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,669 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,673 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,678 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,682 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,691 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,696 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,702 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,710 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,716 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,722 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,727 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,733 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,738 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,743 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,746 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,752 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:41,755 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,756 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,771 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,777 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,783 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,788 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,794 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,801 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,807 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,814 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,820 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,827 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,844 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,850 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,860 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,870 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,879 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,891 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,897 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,909 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,920 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,927 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,930 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,936 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:41,939 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,940 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,943 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,947 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,951 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,954 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,957 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,959 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,963 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,966 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,970 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,973 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,978 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,982 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,986 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,990 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:41,995 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:42,000 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:42,004 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-05-30T09:07:42,006 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-05-30T09:07:42,009 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,011 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,015 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,020 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,024 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,027 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,031 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,034 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,038 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,042 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,045 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,049 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,055 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,059 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,063 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,067 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,072 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,076 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,080 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,084 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,088 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,092 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,095 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,099 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,103 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:42,106 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,107 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,111 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,116 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,120 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,123 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,127 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,132 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,136 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,141 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,146 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,151 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,158 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,162 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,166 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,170 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,175 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,179 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,183 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,187 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,191 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,195 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,198 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,202 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,206 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:42,209 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,210 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,218 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,225 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,232 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,240 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,243 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,297 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:42,305 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,307 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,313 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,318 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,321 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,325 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,329 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,333 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,336 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,340 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,344 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,347 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,351 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,354 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,357 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,361 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,364 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,367 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,371 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,589 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,594 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,599 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,603 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,607 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,611 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,615 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,619 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,622 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,625 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,628 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,631 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,634 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,638 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,641 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,645 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,649 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,653 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,656 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,660 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,664 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:42,668 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,669 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,673 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,678 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,682 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,686 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,689 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,693 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,697 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,701 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,705 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,708 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,712 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,719 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,722 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,726 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,730 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,734 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,738 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,742 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,747 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,750 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:42,753 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,754 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,758 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,763 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,767 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,771 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,775 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,779 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,783 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,787 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,790 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,794 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,799 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,804 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,808 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,812 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,816 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,820 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,825 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,829 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,833 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,836 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:42,839 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,840 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,844 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,849 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,852 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,856 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,860 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,863 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,867 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,872 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,875 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,879 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,884 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,891 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,896 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,902 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,907 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,912 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,918 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,922 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,927 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,931 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:42,934 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,935 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,940 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,944 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,947 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,951 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,955 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,958 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,962 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,966 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,970 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,974 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,980 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,984 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,988 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,993 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:42,997 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,001 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,005 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,009 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,013 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,017 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,021 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,025 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:43,028 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,029 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,035 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,039 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,043 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,047 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,051 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,055 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,059 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,062 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,066 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,070 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,077 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,081 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,086 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,091 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,096 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,101 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,106 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,111 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,116 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,120 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,122 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,126 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:43,129 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,131 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,134 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,137 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,141 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,144 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,148 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,151 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,154 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,158 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,161 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,165 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,169 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,173 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,176 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,180 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,183 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:43,187 creating build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,188 copying SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,193 copying SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,199 copying SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,203 copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,208 copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,210 copying SigProfilerMatrixGenerator/scripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,213 copying SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,217 copying SigProfilerMatrixGenerator/scripts/ref_install.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,220 copying SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,223 copying SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,227 copying SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,230 copying SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,233 copying SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,237 copying SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,241 creating build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,242 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,247 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,250 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,257 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,260 copying SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,262 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,267 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,270 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,275 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,309 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T09:07:43,309 !! 2025-05-30T09:07:43,310 ******************************************************************************** 2025-05-30T09:07:43,311 Please avoid running ``setup.py`` directly. 2025-05-30T09:07:43,311 Instead, use pypa/build, pypa/installer or other 2025-05-30T09:07:43,312 standards-based tools. 2025-05-30T09:07:43,312 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T09:07:43,313 or your builds will no longer be supported. 2025-05-30T09:07:43,314 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T09:07:43,314 ******************************************************************************** 2025-05-30T09:07:43,315 !! 2025-05-30T09:07:43,316 self.initialize_options() 2025-05-30T09:07:43,341 installing to build/bdist.linux-armv7l/wheel 2025-05-30T09:07:43,341 running install 2025-05-30T09:07:43,365 running install_lib 2025-05-30T09:07:43,392 creating build/bdist.linux-armv7l/wheel 2025-05-30T09:07:43,394 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator 2025-05-30T09:07:43,396 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:43,398 copying build/lib/SigProfilerMatrixGenerator/controllers/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:43,400 copying build/lib/SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers 2025-05-30T09:07:43,402 copying build/lib/SigProfilerMatrixGenerator/version.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-05-30T09:07:43,404 copying build/lib/SigProfilerMatrixGenerator/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-05-30T09:07:43,407 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,408 copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,413 copying build/lib/SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,419 copying build/lib/SigProfilerMatrixGenerator/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,421 copying build/lib/SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,424 copying build/lib/SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,427 copying build/lib/SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,430 copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,433 copying build/lib/SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,437 copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,439 copying build/lib/SigProfilerMatrixGenerator/scripts/ref_install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,442 copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,445 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,446 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,451 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,453 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,455 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,457 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,460 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,467 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,469 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,476 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-05-30T09:07:43,483 copying build/lib/SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,488 copying build/lib/SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,493 copying build/lib/SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-05-30T09:07:43,499 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references 2025-05-30T09:07:43,501 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:43,502 copying build/lib/SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:43,505 copying build/lib/SigProfilerMatrixGenerator/references/CNV/.DS_Store -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:43,509 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:43,510 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:43,552 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input 2025-05-30T09:07:43,568 copying build/lib/SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-05-30T09:07:43,570 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_output 2025-05-30T09:07:43,572 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_output 2025-05-30T09:07:43,575 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes 2025-05-30T09:07:43,584 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,585 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,587 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,589 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,591 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,617 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,630 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,637 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,641 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,658 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,660 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,662 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,664 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,677 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,679 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,682 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,690 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,692 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,694 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,696 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,701 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,705 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,707 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,712 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,714 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,717 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,721 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,723 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,725 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,734 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,737 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,739 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,742 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,745 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,747 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,749 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,758 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,760 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,763 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,765 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,768 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,775 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,777 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,779 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,781 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,784 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,790 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,792 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,794 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,796 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,799 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,804 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,806 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,820 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,828 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,830 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,832 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,835 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,840 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,842 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,844 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,848 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,886 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,893 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,917 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,930 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,956 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,974 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,977 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,979 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,981 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,984 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,987 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,996 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:43,999 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,001 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,006 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,010 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,014 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,017 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,019 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,021 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,034 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,037 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,039 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,041 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,043 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,045 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,048 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,050 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,052 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,058 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,061 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,063 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,066 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,068 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,071 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,073 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,075 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,080 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,084 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,086 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,088 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,090 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,092 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,094 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,096 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,098 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,104 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,115 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,128 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,130 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,132 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,134 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,137 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,149 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,151 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,153 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,155 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,162 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,164 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,166 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,170 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,173 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,175 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,201 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,203 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,205 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,207 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,225 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,228 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,236 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,243 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,246 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,249 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,251 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,254 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,278 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,281 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,283 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,286 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,290 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,292 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,296 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,299 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,307 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,309 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,311 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,313 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,326 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,329 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,332 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,334 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,337 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,339 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,341 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,342 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,345 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,347 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,349 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,357 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,359 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,362 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,364 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,366 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,414 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,416 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,419 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,422 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,425 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,430 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,432 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,435 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,442 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,445 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,448 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,451 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,470 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,474 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,502 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,505 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,507 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,509 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,512 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,514 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,517 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,519 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,522 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,524 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,526 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,532 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,538 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,541 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,579 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,582 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,585 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,589 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,593 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,597 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,599 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,602 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,606 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,608 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,611 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,623 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,626 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,632 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,634 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,637 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,639 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,644 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,647 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,650 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,652 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,663 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,665 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,669 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,671 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,673 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,675 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,677 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,684 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,687 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,689 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,710 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,713 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,720 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,722 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,725 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,727 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,729 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,732 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,734 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,737 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,739 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,742 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,744 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,751 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,823 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,834 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,836 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,838 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,846 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,851 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,853 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,858 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,861 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,863 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,865 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,867 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,871 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,874 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,878 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,880 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,881 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,884 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,886 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,894 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,908 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,914 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,916 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,919 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,921 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,923 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,925 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,927 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,930 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,932 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,934 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,937 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,950 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,953 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,955 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,961 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,964 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,966 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,971 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,974 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,977 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,981 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:44,988 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,001 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,005 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,007 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,009 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,012 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,014 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,017 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,019 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,021 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,040 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,043 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,045 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,047 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,049 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,053 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,059 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,062 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,069 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,072 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,074 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,076 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,078 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,081 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,106 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,108 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,112 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,116 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,123 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,126 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,132 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,135 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,154 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,158 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,160 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,162 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,169 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,171 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,173 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,176 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,178 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,182 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,184 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,186 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,188 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,190 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,209 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,212 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,213 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,216 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,217 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,223 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,226 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,228 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,232 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,238 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,248 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,251 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,302 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,304 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,307 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-05-30T09:07:45,309 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-05-30T09:07:45,311 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,312 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,329 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,361 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,364 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,381 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,397 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,405 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,422 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,433 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,439 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,449 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,456 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,483 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,493 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,500 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,505 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,506 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,516 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,535 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,568 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,581 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,590 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-05-30T09:07:45,598 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,599 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,604 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,610 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,612 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,618 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,627 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,632 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,639 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,644 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,647 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,652 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,655 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,661 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,666 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,671 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,676 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,679 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,681 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,698 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,702 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,705 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,713 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,718 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-05-30T09:07:45,723 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,724 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,739 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,758 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,761 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,775 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,782 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,788 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,797 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,803 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,815 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,823 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,830 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,858 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,873 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,880 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,885 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,896 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,906 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,923 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,935 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,947 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-05-30T09:07:45,954 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,955 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,960 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,963 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,965 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,968 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,971 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,974 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,977 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,980 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,984 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,988 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,991 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,994 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:45,998 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:46,000 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:46,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:46,006 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-05-30T09:07:46,012 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,014 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,017 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,020 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,025 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,028 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,033 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,039 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,042 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,045 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,048 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,052 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,057 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,061 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,067 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,071 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,074 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,077 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,080 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,082 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,085 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,089 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,092 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,096 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,100 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,104 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,107 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,111 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,115 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,118 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,122 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,125 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,128 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,131 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,135 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,140 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,144 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,147 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,151 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,156 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-05-30T09:07:46,159 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-05-30T09:07:46,161 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-05-30T09:07:46,162 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-05-30T09:07:46,166 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,167 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,175 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,184 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,186 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,193 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,202 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,208 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,217 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,223 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,228 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,233 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,239 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,247 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,255 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,260 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,264 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,269 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,271 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,285 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,290 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,295 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,302 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,308 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-05-30T09:07:46,314 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,315 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,326 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,336 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,338 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,342 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,351 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,356 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,367 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,375 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,385 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,391 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,406 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,414 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,423 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,430 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,436 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,443 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,454 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,465 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,467 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,478 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,488 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,505 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,513 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,520 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-05-30T09:07:46,526 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,528 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,535 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,544 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,557 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,565 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,577 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,579 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-05-30T09:07:46,588 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,589 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,597 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,613 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,616 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,624 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,631 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,638 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,644 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,650 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,655 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,661 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,666 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,678 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,687 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,693 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,697 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,699 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,707 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,714 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,724 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,731 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,740 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-05-30T09:07:46,747 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,748 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,762 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,772 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,775 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,779 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,790 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,796 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,806 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,818 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,829 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,840 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,845 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,857 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,865 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,872 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,876 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,883 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,887 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,890 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,903 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,924 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,934 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,941 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,948 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-05-30T09:07:46,957 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-05-30T09:07:46,959 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,961 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,965 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,968 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,972 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,976 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,979 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,981 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,985 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,989 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,993 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:46,999 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,007 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,010 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,014 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,018 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,021 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,024 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,029 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,032 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,037 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-05-30T09:07:47,042 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,044 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,047 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,051 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,054 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,059 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,062 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,064 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,067 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,070 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,073 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,080 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,084 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,090 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,094 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,097 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,102 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,106 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,109 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,112 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,115 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,119 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,122 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,125 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-05-30T09:07:47,130 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,131 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,134 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,138 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,140 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,143 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,146 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,148 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,151 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,155 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,158 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,162 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,166 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,170 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,174 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,177 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,180 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,183 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,186 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,190 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,194 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,198 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-05-30T09:07:47,202 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,203 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,206 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,209 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,211 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,214 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,217 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,219 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,222 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,225 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,228 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,230 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,233 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,235 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,238 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,240 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,243 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-05-30T09:07:47,247 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,248 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,251 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,254 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,257 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,259 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,262 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,265 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,268 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,271 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,273 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,276 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,279 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,282 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,285 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,288 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,291 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,293 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,296 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,298 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,302 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,305 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,308 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,310 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,313 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,316 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,319 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,321 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,324 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,327 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,330 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,332 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,335 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,338 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,342 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,345 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,348 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,351 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,354 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,358 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-05-30T09:07:47,361 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-05-30T09:07:47,363 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,365 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,368 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,372 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,375 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,379 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,383 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,385 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,387 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,390 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,394 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,397 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,401 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,406 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,413 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,419 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,425 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,429 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,433 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,437 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,440 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,444 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,448 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,451 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-05-30T09:07:47,457 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,458 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,462 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,465 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,470 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,473 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,476 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,478 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,481 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,484 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,488 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,491 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,496 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,499 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,502 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,506 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,509 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,513 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,516 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,519 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,522 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,525 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,528 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,531 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,533 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-05-30T09:07:47,537 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,538 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,540 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,545 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,550 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,554 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,558 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,563 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-05-30T09:07:47,569 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,570 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,574 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,577 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,580 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,583 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,586 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,589 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,593 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,596 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,600 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,604 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,608 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,611 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,615 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,618 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,621 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,624 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,628 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,632 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,635 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,640 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-05-30T09:07:47,646 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,647 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,651 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,654 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,658 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,661 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,664 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,666 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,669 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,672 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,676 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,679 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,684 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,687 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,690 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,694 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,698 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,701 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,705 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,709 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,712 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,717 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,720 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,723 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,726 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-05-30T09:07:47,730 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-05-30T09:07:47,732 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-05-30T09:07:47,756 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-05-30T09:07:47,842 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-05-30T09:07:47,980 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-05-30T09:07:48,708 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-05-30T09:07:48,709 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-05-30T09:07:48,841 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-05-30T09:07:48,843 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-05-30T09:07:48,850 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-05-30T09:07:48,852 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-05-30T09:07:48,933 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome 2025-05-30T09:07:48,935 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:48,936 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:48,938 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:48,941 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-05-30T09:07:48,943 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-05-30T09:07:49,026 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-05-30T09:07:49,307 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-05-30T09:07:49,308 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-05-30T09:07:49,389 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-05-30T09:07:49,390 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-05-30T09:07:49,823 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-05-30T09:07:49,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-05-30T09:07:49,907 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-05-30T09:07:49,909 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-05-30T09:07:50,368 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV 2025-05-30T09:07:50,370 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input 2025-05-30T09:07:50,372 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,373 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,414 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,416 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,419 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,421 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-05-30T09:07:50,430 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,431 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,433 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,436 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,439 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,441 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,444 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,446 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,448 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,451 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,453 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,455 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,458 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,460 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,462 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,465 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,467 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,470 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,472 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,475 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,477 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,479 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,482 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,484 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,487 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,489 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,492 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,494 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,496 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,499 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,501 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,504 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,507 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,509 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,511 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,514 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,516 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,519 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,521 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,523 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,525 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,528 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,530 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,533 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,535 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,538 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,541 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,544 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,546 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,550 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,551 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-05-30T09:07:50,555 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,556 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,559 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,561 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,563 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,566 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,568 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,572 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,575 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,577 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,580 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,582 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,585 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,587 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,589 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,593 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,595 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,597 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,599 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,601 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,606 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,609 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,612 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,615 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,618 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,622 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,625 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,627 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,631 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,634 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,637 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,639 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,641 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,644 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,646 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,648 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,651 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,654 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,656 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,659 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,661 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,664 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,666 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,669 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,672 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,674 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,677 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,679 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,682 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,685 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,687 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-05-30T09:07:50,689 copying build/lib/SigProfilerMatrixGenerator/install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-05-30T09:07:50,692 copying build/lib/SigProfilerMatrixGenerator/test_helpers.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-05-30T09:07:50,694 running install_egg_info 2025-05-30T09:07:50,732 Copying SigProfilerMatrixGenerator.egg-info to build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator-1.3.2-py3.11.egg-info 2025-05-30T09:07:50,749 running install_scripts 2025-05-30T09:07:50,764 creating build/bdist.linux-armv7l/wheel/sigprofilermatrixgenerator-1.3.2.dist-info/WHEEL 2025-05-30T09:07:50,766 creating '/tmp/pip-wheel-ql5faoq0/sigprofilermatrixgenerator-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T09:07:50,769 adding 'SigProfilerMatrixGenerator/__init__.py' 2025-05-30T09:07:50,773 adding 'SigProfilerMatrixGenerator/install.py' 2025-05-30T09:07:50,775 adding 'SigProfilerMatrixGenerator/test_helpers.py' 2025-05-30T09:07:50,777 adding 'SigProfilerMatrixGenerator/version.py' 2025-05-30T09:07:50,779 adding 'SigProfilerMatrixGenerator/controllers/__init__.py' 2025-05-30T09:07:50,781 adding 'SigProfilerMatrixGenerator/controllers/cli_controller.py' 2025-05-30T09:07:50,784 adding 'SigProfilerMatrixGenerator/references/CNV/.DS_Store' 2025-05-30T09:07:50,785 adding 'SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv' 2025-05-30T09:07:50,787 adding 'SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt' 2025-05-30T09:07:50,941 adding 'SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv' 2025-05-30T09:07:51,011 adding 'SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv' 2025-05-30T09:07:51,017 adding 'SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv' 2025-05-30T09:07:51,023 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,025 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,026 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,027 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,029 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,030 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,031 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,034 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,036 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,039 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,041 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,044 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,047 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,050 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,051 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,053 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,054 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,055 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,057 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,058 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,060 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,062 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,064 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,066 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,067 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,069 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,074 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,076 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,079 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,080 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,082 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,084 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,087 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,088 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,089 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,094 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,096 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,099 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,102 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,104 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,109 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,111 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,115 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,116 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,119 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,120 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,121 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,123 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,124 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,125 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe' 2025-05-30T09:07:51,128 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe' 2025-05-30T09:07:51,130 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe' 2025-05-30T09:07:51,132 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe' 2025-05-30T09:07:51,133 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe' 2025-05-30T09:07:51,134 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe' 2025-05-30T09:07:51,136 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe' 2025-05-30T09:07:51,137 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe' 2025-05-30T09:07:51,138 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe' 2025-05-30T09:07:51,139 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe' 2025-05-30T09:07:51,141 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe' 2025-05-30T09:07:51,142 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe' 2025-05-30T09:07:51,145 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe' 2025-05-30T09:07:51,148 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe' 2025-05-30T09:07:51,150 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe' 2025-05-30T09:07:51,153 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe' 2025-05-30T09:07:51,155 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe' 2025-05-30T09:07:51,158 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe' 2025-05-30T09:07:51,160 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe' 2025-05-30T09:07:51,161 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe' 2025-05-30T09:07:51,164 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe' 2025-05-30T09:07:51,166 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe' 2025-05-30T09:07:51,167 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe' 2025-05-30T09:07:51,169 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe' 2025-05-30T09:07:51,171 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe' 2025-05-30T09:07:51,173 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe' 2025-05-30T09:07:51,175 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe' 2025-05-30T09:07:51,180 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe' 2025-05-30T09:07:51,183 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe' 2025-05-30T09:07:51,185 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe' 2025-05-30T09:07:51,186 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe' 2025-05-30T09:07:51,187 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe' 2025-05-30T09:07:51,189 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe' 2025-05-30T09:07:51,190 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe' 2025-05-30T09:07:51,192 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe' 2025-05-30T09:07:51,194 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe' 2025-05-30T09:07:51,196 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe' 2025-05-30T09:07:51,198 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe' 2025-05-30T09:07:51,207 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe' 2025-05-30T09:07:51,209 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe' 2025-05-30T09:07:51,210 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe' 2025-05-30T09:07:51,211 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe' 2025-05-30T09:07:51,214 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe' 2025-05-30T09:07:51,215 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe' 2025-05-30T09:07:51,216 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe' 2025-05-30T09:07:51,218 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe' 2025-05-30T09:07:51,219 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe' 2025-05-30T09:07:51,220 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe' 2025-05-30T09:07:51,223 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe' 2025-05-30T09:07:51,225 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe' 2025-05-30T09:07:51,226 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe' 2025-05-30T09:07:51,252 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf' 2025-05-30T09:07:51,256 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf' 2025-05-30T09:07:51,415 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf' 2025-05-30T09:07:51,429 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf' 2025-05-30T09:07:51,431 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf' 2025-05-30T09:07:51,465 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv' 2025-05-30T09:07:51,490 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv' 2025-05-30T09:07:51,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv' 2025-05-30T09:07:51,493 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv' 2025-05-30T09:07:51,497 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv' 2025-05-30T09:07:51,501 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv' 2025-05-30T09:07:51,502 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv' 2025-05-30T09:07:51,608 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv' 2025-05-30T09:07:51,711 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv' 2025-05-30T09:07:51,713 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv' 2025-05-30T09:07:51,715 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv' 2025-05-30T09:07:51,717 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv' 2025-05-30T09:07:51,718 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv' 2025-05-30T09:07:51,719 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv' 2025-05-30T09:07:51,721 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv' 2025-05-30T09:07:51,722 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv' 2025-05-30T09:07:51,748 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv' 2025-05-30T09:07:51,771 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv' 2025-05-30T09:07:51,773 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv' 2025-05-30T09:07:51,774 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv' 2025-05-30T09:07:51,778 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv' 2025-05-30T09:07:51,782 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv' 2025-05-30T09:07:51,783 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv' 2025-05-30T09:07:51,889 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv' 2025-05-30T09:07:51,993 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv' 2025-05-30T09:07:51,996 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv' 2025-05-30T09:07:51,997 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv' 2025-05-30T09:07:51,999 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv' 2025-05-30T09:07:52,000 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv' 2025-05-30T09:07:52,002 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv' 2025-05-30T09:07:52,003 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv' 2025-05-30T09:07:52,004 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv' 2025-05-30T09:07:52,029 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv' 2025-05-30T09:07:52,048 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv' 2025-05-30T09:07:52,049 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv' 2025-05-30T09:07:52,051 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv' 2025-05-30T09:07:52,054 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv' 2025-05-30T09:07:52,058 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv' 2025-05-30T09:07:52,059 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv' 2025-05-30T09:07:52,150 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv' 2025-05-30T09:07:52,238 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv' 2025-05-30T09:07:52,243 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv' 2025-05-30T09:07:52,245 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv' 2025-05-30T09:07:52,246 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv' 2025-05-30T09:07:52,248 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv' 2025-05-30T09:07:52,249 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv' 2025-05-30T09:07:52,250 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv' 2025-05-30T09:07:52,252 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv' 2025-05-30T09:07:52,276 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv' 2025-05-30T09:07:52,295 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv' 2025-05-30T09:07:52,296 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv' 2025-05-30T09:07:52,297 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv' 2025-05-30T09:07:52,301 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv' 2025-05-30T09:07:52,304 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv' 2025-05-30T09:07:52,305 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv' 2025-05-30T09:07:52,397 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv' 2025-05-30T09:07:52,485 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv' 2025-05-30T09:07:52,487 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv' 2025-05-30T09:07:52,489 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv' 2025-05-30T09:07:52,491 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv' 2025-05-30T09:07:52,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv' 2025-05-30T09:07:52,493 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv' 2025-05-30T09:07:52,495 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv' 2025-05-30T09:07:52,496 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv' 2025-05-30T09:07:52,521 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv' 2025-05-30T09:07:52,539 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv' 2025-05-30T09:07:52,541 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv' 2025-05-30T09:07:52,542 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv' 2025-05-30T09:07:52,546 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv' 2025-05-30T09:07:52,549 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv' 2025-05-30T09:07:52,550 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv' 2025-05-30T09:07:52,640 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv' 2025-05-30T09:07:52,729 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv' 2025-05-30T09:07:52,731 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv' 2025-05-30T09:07:52,733 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv' 2025-05-30T09:07:52,735 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv' 2025-05-30T09:07:52,736 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv' 2025-05-30T09:07:52,737 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv' 2025-05-30T09:07:52,739 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv' 2025-05-30T09:07:52,740 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv' 2025-05-30T09:07:52,765 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv' 2025-05-30T09:07:52,785 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv' 2025-05-30T09:07:52,786 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv' 2025-05-30T09:07:52,788 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv' 2025-05-30T09:07:52,791 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv' 2025-05-30T09:07:52,795 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv' 2025-05-30T09:07:52,796 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv' 2025-05-30T09:07:52,893 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv' 2025-05-30T09:07:52,985 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv' 2025-05-30T09:07:52,988 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv' 2025-05-30T09:07:52,990 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv' 2025-05-30T09:07:52,992 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv' 2025-05-30T09:07:53,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv' 2025-05-30T09:07:53,039 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv' 2025-05-30T09:07:53,040 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv' 2025-05-30T09:07:53,042 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv' 2025-05-30T09:07:53,045 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv' 2025-05-30T09:07:53,049 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv' 2025-05-30T09:07:53,050 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv' 2025-05-30T09:07:53,148 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv' 2025-05-30T09:07:53,237 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv' 2025-05-30T09:07:53,239 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv' 2025-05-30T09:07:53,241 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv' 2025-05-30T09:07:53,242 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv' 2025-05-30T09:07:53,244 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv' 2025-05-30T09:07:53,245 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv' 2025-05-30T09:07:53,246 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv' 2025-05-30T09:07:53,248 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv' 2025-05-30T09:07:53,261 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv' 2025-05-30T09:07:53,263 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv' 2025-05-30T09:07:53,264 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv' 2025-05-30T09:07:53,267 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv' 2025-05-30T09:07:53,268 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv' 2025-05-30T09:07:53,333 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv' 2025-05-30T09:07:53,335 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv' 2025-05-30T09:07:53,336 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv' 2025-05-30T09:07:53,337 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv' 2025-05-30T09:07:53,373 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv' 2025-05-30T09:07:53,409 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv' 2025-05-30T09:07:53,475 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv' 2025-05-30T09:07:53,541 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv' 2025-05-30T09:07:53,544 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv' 2025-05-30T09:07:53,545 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv' 2025-05-30T09:07:53,547 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv' 2025-05-30T09:07:53,549 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv' 2025-05-30T09:07:53,557 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv' 2025-05-30T09:07:53,565 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv' 2025-05-30T09:07:53,583 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv' 2025-05-30T09:07:53,603 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv' 2025-05-30T09:07:53,749 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv' 2025-05-30T09:07:53,894 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv' 2025-05-30T09:07:54,183 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv' 2025-05-30T09:07:54,437 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv' 2025-05-30T09:07:54,445 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv' 2025-05-30T09:07:54,446 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv' 2025-05-30T09:07:54,447 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv' 2025-05-30T09:07:54,448 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv' 2025-05-30T09:07:54,451 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv' 2025-05-30T09:07:54,453 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv' 2025-05-30T09:07:54,457 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv' 2025-05-30T09:07:54,460 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv' 2025-05-30T09:07:54,463 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv' 2025-05-30T09:07:54,466 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv' 2025-05-30T09:07:54,468 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv' 2025-05-30T09:07:54,471 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv' 2025-05-30T09:07:54,473 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv' 2025-05-30T09:07:54,475 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv' 2025-05-30T09:07:54,477 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv' 2025-05-30T09:07:54,478 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv' 2025-05-30T09:07:54,480 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv' 2025-05-30T09:07:54,518 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv' 2025-05-30T09:07:54,585 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv' 2025-05-30T09:07:54,651 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv' 2025-05-30T09:07:54,716 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv' 2025-05-30T09:07:54,719 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv' 2025-05-30T09:07:54,721 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv' 2025-05-30T09:07:54,722 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv' 2025-05-30T09:07:54,724 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv' 2025-05-30T09:07:54,731 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv' 2025-05-30T09:07:54,747 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv' 2025-05-30T09:07:54,763 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv' 2025-05-30T09:07:54,772 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv' 2025-05-30T09:07:54,917 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv' 2025-05-30T09:07:55,063 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv' 2025-05-30T09:07:55,328 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv' 2025-05-30T09:07:55,583 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv' 2025-05-30T09:07:55,591 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv' 2025-05-30T09:07:55,592 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv' 2025-05-30T09:07:55,593 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv' 2025-05-30T09:07:55,594 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv' 2025-05-30T09:07:55,597 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv' 2025-05-30T09:07:55,600 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv' 2025-05-30T09:07:55,603 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv' 2025-05-30T09:07:55,606 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv' 2025-05-30T09:07:55,609 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv' 2025-05-30T09:07:55,612 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv' 2025-05-30T09:07:55,614 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv' 2025-05-30T09:07:55,618 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv' 2025-05-30T09:07:55,620 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv' 2025-05-30T09:07:55,621 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv' 2025-05-30T09:07:55,623 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv' 2025-05-30T09:07:55,625 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv' 2025-05-30T09:07:55,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv' 2025-05-30T09:07:55,693 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv' 2025-05-30T09:07:55,749 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv' 2025-05-30T09:07:55,805 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv' 2025-05-30T09:07:55,808 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv' 2025-05-30T09:07:55,810 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv' 2025-05-30T09:07:55,811 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv' 2025-05-30T09:07:55,812 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv' 2025-05-30T09:07:55,819 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv' 2025-05-30T09:07:55,826 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv' 2025-05-30T09:07:55,840 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv' 2025-05-30T09:07:55,847 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv' 2025-05-30T09:07:55,974 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv' 2025-05-30T09:07:56,107 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv' 2025-05-30T09:07:56,347 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv' 2025-05-30T09:07:56,567 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv' 2025-05-30T09:07:56,789 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv' 2025-05-30T09:07:56,792 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv' 2025-05-30T09:07:56,794 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv' 2025-05-30T09:07:56,798 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv' 2025-05-30T09:07:56,802 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv' 2025-05-30T09:07:56,807 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv' 2025-05-30T09:07:56,811 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv' 2025-05-30T09:07:56,814 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv' 2025-05-30T09:07:56,817 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv' 2025-05-30T09:07:56,820 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv' 2025-05-30T09:07:56,822 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv' 2025-05-30T09:07:56,824 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv' 2025-05-30T09:07:56,825 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv' 2025-05-30T09:07:56,827 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv' 2025-05-30T09:07:56,829 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv' 2025-05-30T09:07:56,889 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv' 2025-05-30T09:07:56,948 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv' 2025-05-30T09:07:57,008 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv' 2025-05-30T09:07:57,070 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv' 2025-05-30T09:07:57,073 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv' 2025-05-30T09:07:57,075 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv' 2025-05-30T09:07:57,076 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv' 2025-05-30T09:07:57,078 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv' 2025-05-30T09:07:57,092 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv' 2025-05-30T09:07:57,105 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv' 2025-05-30T09:07:57,119 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv' 2025-05-30T09:07:57,134 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv' 2025-05-30T09:07:57,369 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv' 2025-05-30T09:07:57,594 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv' 2025-05-30T09:07:57,848 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv' 2025-05-30T09:07:58,082 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv' 2025-05-30T09:07:58,089 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv' 2025-05-30T09:07:58,090 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv' 2025-05-30T09:07:58,092 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv' 2025-05-30T09:07:58,093 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv' 2025-05-30T09:07:58,096 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv' 2025-05-30T09:07:58,099 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv' 2025-05-30T09:07:58,102 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv' 2025-05-30T09:07:58,105 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv' 2025-05-30T09:07:58,108 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv' 2025-05-30T09:07:58,110 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv' 2025-05-30T09:07:58,113 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv' 2025-05-30T09:07:58,115 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv' 2025-05-30T09:07:58,118 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv' 2025-05-30T09:07:58,340 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv' 2025-05-30T09:07:58,343 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv' 2025-05-30T09:07:58,346 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv' 2025-05-30T09:07:58,390 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv' 2025-05-30T09:07:58,422 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv' 2025-05-30T09:07:58,478 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv' 2025-05-30T09:07:58,537 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv' 2025-05-30T09:07:58,541 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv' 2025-05-30T09:07:58,542 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv' 2025-05-30T09:07:58,544 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv' 2025-05-30T09:07:58,546 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv' 2025-05-30T09:07:58,553 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv' 2025-05-30T09:07:58,561 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv' 2025-05-30T09:07:58,577 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv' 2025-05-30T09:07:58,585 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv' 2025-05-30T09:07:58,713 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv' 2025-05-30T09:07:58,840 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv' 2025-05-30T09:07:59,070 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv' 2025-05-30T09:07:59,290 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv' 2025-05-30T09:07:59,298 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv' 2025-05-30T09:07:59,299 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv' 2025-05-30T09:07:59,300 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv' 2025-05-30T09:07:59,302 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv' 2025-05-30T09:07:59,304 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv' 2025-05-30T09:07:59,306 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv' 2025-05-30T09:07:59,309 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv' 2025-05-30T09:07:59,312 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv' 2025-05-30T09:07:59,314 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv' 2025-05-30T09:07:59,316 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv' 2025-05-30T09:07:59,319 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv' 2025-05-30T09:07:59,321 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv' 2025-05-30T09:07:59,323 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv' 2025-05-30T09:07:59,325 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv' 2025-05-30T09:07:59,327 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv' 2025-05-30T09:07:59,328 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv' 2025-05-30T09:07:59,362 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv' 2025-05-30T09:07:59,396 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv' 2025-05-30T09:07:59,429 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv' 2025-05-30T09:07:59,464 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv' 2025-05-30T09:07:59,466 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv' 2025-05-30T09:07:59,468 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv' 2025-05-30T09:07:59,469 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv' 2025-05-30T09:07:59,471 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv' 2025-05-30T09:07:59,478 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv' 2025-05-30T09:07:59,485 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv' 2025-05-30T09:07:59,493 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv' 2025-05-30T09:07:59,501 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv' 2025-05-30T09:07:59,634 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv' 2025-05-30T09:07:59,771 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv' 2025-05-30T09:07:59,910 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv' 2025-05-30T09:08:00,053 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv' 2025-05-30T09:08:00,058 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv' 2025-05-30T09:08:00,059 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv' 2025-05-30T09:08:00,061 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv' 2025-05-30T09:08:00,062 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv' 2025-05-30T09:08:00,064 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv' 2025-05-30T09:08:00,067 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv' 2025-05-30T09:08:00,069 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv' 2025-05-30T09:08:00,072 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv' 2025-05-30T09:08:00,136 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv' 2025-05-30T09:08:00,198 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv' 2025-05-30T09:08:00,263 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv' 2025-05-30T09:08:00,329 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv' 2025-05-30T09:08:00,332 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv' 2025-05-30T09:08:00,334 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv' 2025-05-30T09:08:00,335 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv' 2025-05-30T09:08:00,337 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv' 2025-05-30T09:08:00,351 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv' 2025-05-30T09:08:00,365 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv' 2025-05-30T09:08:00,380 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv' 2025-05-30T09:08:00,395 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv' 2025-05-30T09:08:00,644 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv' 2025-05-30T09:08:00,880 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv' 2025-05-30T09:08:01,149 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv' 2025-05-30T09:08:01,392 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv' 2025-05-30T09:08:01,399 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv' 2025-05-30T09:08:01,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv' 2025-05-30T09:08:01,402 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv' 2025-05-30T09:08:01,403 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv' 2025-05-30T09:08:01,406 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv' 2025-05-30T09:08:01,409 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv' 2025-05-30T09:08:01,412 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv' 2025-05-30T09:08:01,415 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv' 2025-05-30T09:08:01,418 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv' 2025-05-30T09:08:01,421 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv' 2025-05-30T09:08:01,423 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv' 2025-05-30T09:08:01,426 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv' 2025-05-30T09:08:01,428 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv' 2025-05-30T09:08:01,429 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv' 2025-05-30T09:08:01,431 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv' 2025-05-30T09:08:01,433 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv' 2025-05-30T09:08:01,442 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt' 2025-05-30T09:08:01,489 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv' 2025-05-30T09:08:01,497 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv' 2025-05-30T09:08:01,498 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv' 2025-05-30T09:08:01,508 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv' 2025-05-30T09:08:01,679 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv' 2025-05-30T09:08:01,685 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv' 2025-05-30T09:08:01,688 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv' 2025-05-30T09:08:01,690 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv' 2025-05-30T09:08:01,692 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv' 2025-05-30T09:08:01,693 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py' 2025-05-30T09:08:04,459 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list' 2025-05-30T09:08:05,529 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list' 2025-05-30T09:08:06,835 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list' 2025-05-30T09:08:07,738 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list' 2025-05-30T09:08:07,768 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list' 2025-05-30T09:08:07,770 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt' 2025-05-30T09:08:07,772 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv' 2025-05-30T09:08:08,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list' 2025-05-30T09:08:09,571 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list' 2025-05-30T09:08:10,483 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list' 2025-05-30T09:08:12,799 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list' 2025-05-30T09:08:14,117 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list' 2025-05-30T09:08:14,203 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list' 2025-05-30T09:08:14,206 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py' 2025-05-30T09:08:14,228 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt' 2025-05-30T09:08:14,272 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt' 2025-05-30T09:08:14,315 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt' 2025-05-30T09:08:14,326 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt' 2025-05-30T09:08:14,350 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt' 2025-05-30T09:08:14,372 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt' 2025-05-30T09:08:14,404 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt' 2025-05-30T09:08:14,447 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt' 2025-05-30T09:08:14,460 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt' 2025-05-30T09:08:14,511 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt' 2025-05-30T09:08:14,573 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt' 2025-05-30T09:08:14,591 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt' 2025-05-30T09:08:14,598 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt' 2025-05-30T09:08:14,613 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt' 2025-05-30T09:08:14,658 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt' 2025-05-30T09:08:14,700 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt' 2025-05-30T09:08:14,726 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt' 2025-05-30T09:08:14,755 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt' 2025-05-30T09:08:14,787 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt' 2025-05-30T09:08:14,818 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt' 2025-05-30T09:08:14,843 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt' 2025-05-30T09:08:14,866 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt' 2025-05-30T09:08:14,868 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt' 2025-05-30T09:08:14,890 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt' 2025-05-30T09:08:14,893 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt' 2025-05-30T09:08:14,916 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt' 2025-05-30T09:08:14,962 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt' 2025-05-30T09:08:15,004 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt' 2025-05-30T09:08:15,015 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt' 2025-05-30T09:08:15,039 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt' 2025-05-30T09:08:15,061 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt' 2025-05-30T09:08:15,093 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt' 2025-05-30T09:08:15,136 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt' 2025-05-30T09:08:15,150 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt' 2025-05-30T09:08:15,201 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt' 2025-05-30T09:08:15,264 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt' 2025-05-30T09:08:15,282 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt' 2025-05-30T09:08:15,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt' 2025-05-30T09:08:15,304 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt' 2025-05-30T09:08:15,349 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt' 2025-05-30T09:08:15,391 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt' 2025-05-30T09:08:15,420 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt' 2025-05-30T09:08:15,450 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt' 2025-05-30T09:08:15,482 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt' 2025-05-30T09:08:15,514 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt' 2025-05-30T09:08:15,540 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt' 2025-05-30T09:08:15,563 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt' 2025-05-30T09:08:15,565 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt' 2025-05-30T09:08:15,589 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt' 2025-05-30T09:08:15,592 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt' 2025-05-30T09:08:15,626 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt' 2025-05-30T09:08:15,670 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt' 2025-05-30T09:08:15,716 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt' 2025-05-30T09:08:15,755 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt' 2025-05-30T09:08:15,758 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt' 2025-05-30T09:08:15,816 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt' 2025-05-30T09:08:15,853 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt' 2025-05-30T09:08:15,863 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt' 2025-05-30T09:08:15,869 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt' 2025-05-30T09:08:15,875 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt' 2025-05-30T09:08:15,880 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt' 2025-05-30T09:08:15,883 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt' 2025-05-30T09:08:15,889 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt' 2025-05-30T09:08:15,894 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt' 2025-05-30T09:08:15,900 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt' 2025-05-30T09:08:15,908 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt' 2025-05-30T09:08:15,911 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt' 2025-05-30T09:08:15,925 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt' 2025-05-30T09:08:15,935 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt' 2025-05-30T09:08:15,941 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt' 2025-05-30T09:08:15,943 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt' 2025-05-30T09:08:15,947 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt' 2025-05-30T09:08:15,953 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt' 2025-05-30T09:08:15,957 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt' 2025-05-30T09:08:15,963 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt' 2025-05-30T09:08:15,969 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt' 2025-05-30T09:08:15,973 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt' 2025-05-30T09:08:15,976 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt' 2025-05-30T09:08:15,985 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt' 2025-05-30T09:08:15,990 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt' 2025-05-30T09:08:15,993 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt' 2025-05-30T09:08:15,995 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt' 2025-05-30T09:08:15,998 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt' 2025-05-30T09:08:16,001 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt' 2025-05-30T09:08:16,004 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt' 2025-05-30T09:08:16,007 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt' 2025-05-30T09:08:16,010 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt' 2025-05-30T09:08:16,012 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt' 2025-05-30T09:08:16,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt' 2025-05-30T09:08:16,024 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt' 2025-05-30T09:08:16,035 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt' 2025-05-30T09:08:16,046 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt' 2025-05-30T09:08:16,054 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt' 2025-05-30T09:08:16,060 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt' 2025-05-30T09:08:16,073 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt' 2025-05-30T09:08:16,082 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt' 2025-05-30T09:08:16,084 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt' 2025-05-30T09:08:16,109 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt' 2025-05-30T09:08:16,145 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt' 2025-05-30T09:08:16,161 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt' 2025-05-30T09:08:16,179 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt' 2025-05-30T09:08:16,199 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt' 2025-05-30T09:08:16,217 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt' 2025-05-30T09:08:16,233 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt' 2025-05-30T09:08:16,256 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt' 2025-05-30T09:08:16,267 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt' 2025-05-30T09:08:16,280 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt' 2025-05-30T09:08:16,309 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt' 2025-05-30T09:08:16,352 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt' 2025-05-30T09:08:16,378 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt' 2025-05-30T09:08:16,407 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt' 2025-05-30T09:08:16,439 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt' 2025-05-30T09:08:16,467 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt' 2025-05-30T09:08:16,515 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt' 2025-05-30T09:08:16,539 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt' 2025-05-30T09:08:16,569 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt' 2025-05-30T09:08:16,572 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt' 2025-05-30T09:08:16,590 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt' 2025-05-30T09:08:16,594 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt' 2025-05-30T09:08:16,618 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt' 2025-05-30T09:08:16,661 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt' 2025-05-30T09:08:16,678 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt' 2025-05-30T09:08:16,696 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt' 2025-05-30T09:08:16,715 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt' 2025-05-30T09:08:16,734 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt' 2025-05-30T09:08:16,750 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt' 2025-05-30T09:08:16,775 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt' 2025-05-30T09:08:16,788 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt' 2025-05-30T09:08:16,807 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt' 2025-05-30T09:08:16,837 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt' 2025-05-30T09:08:16,882 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt' 2025-05-30T09:08:16,909 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt' 2025-05-30T09:08:16,939 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt' 2025-05-30T09:08:16,971 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt' 2025-05-30T09:08:16,999 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt' 2025-05-30T09:08:17,063 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt' 2025-05-30T09:08:17,088 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt' 2025-05-30T09:08:17,118 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt' 2025-05-30T09:08:17,142 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt' 2025-05-30T09:08:17,145 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt' 2025-05-30T09:08:17,176 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt' 2025-05-30T09:08:17,245 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt' 2025-05-30T09:08:17,266 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt' 2025-05-30T09:08:17,286 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt' 2025-05-30T09:08:17,308 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt' 2025-05-30T09:08:17,330 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt' 2025-05-30T09:08:17,352 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt' 2025-05-30T09:08:17,386 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt' 2025-05-30T09:08:17,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt' 2025-05-30T09:08:17,418 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt' 2025-05-30T09:08:17,453 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt' 2025-05-30T09:08:17,531 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt' 2025-05-30T09:08:17,574 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt' 2025-05-30T09:08:17,629 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt' 2025-05-30T09:08:17,675 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt' 2025-05-30T09:08:17,717 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt' 2025-05-30T09:08:17,776 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt' 2025-05-30T09:08:17,808 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt' 2025-05-30T09:08:17,841 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt' 2025-05-30T09:08:17,844 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt' 2025-05-30T09:08:17,870 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt' 2025-05-30T09:08:17,873 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt' 2025-05-30T09:08:17,896 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt' 2025-05-30T09:08:17,904 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt' 2025-05-30T09:08:17,912 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt' 2025-05-30T09:08:17,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt' 2025-05-30T09:08:17,929 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt' 2025-05-30T09:08:17,938 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt' 2025-05-30T09:08:17,945 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt' 2025-05-30T09:08:17,953 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt' 2025-05-30T09:08:17,960 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt' 2025-05-30T09:08:17,966 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt' 2025-05-30T09:08:18,002 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt' 2025-05-30T09:08:18,012 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt' 2025-05-30T09:08:18,030 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt' 2025-05-30T09:08:18,052 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt' 2025-05-30T09:08:18,069 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt' 2025-05-30T09:08:18,086 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt' 2025-05-30T09:08:18,098 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt' 2025-05-30T09:08:18,114 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt' 2025-05-30T09:08:18,130 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt' 2025-05-30T09:08:18,141 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt' 2025-05-30T09:08:18,143 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt' 2025-05-30T09:08:18,153 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt' 2025-05-30T09:08:18,154 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt' 2025-05-30T09:08:18,189 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt' 2025-05-30T09:08:18,203 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt' 2025-05-30T09:08:18,217 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt' 2025-05-30T09:08:18,231 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt' 2025-05-30T09:08:18,247 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt' 2025-05-30T09:08:18,262 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt' 2025-05-30T09:08:18,275 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt' 2025-05-30T09:08:18,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt' 2025-05-30T09:08:18,301 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt' 2025-05-30T09:08:18,313 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt' 2025-05-30T09:08:18,373 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt' 2025-05-30T09:08:18,389 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt' 2025-05-30T09:08:18,421 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt' 2025-05-30T09:08:18,458 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt' 2025-05-30T09:08:18,490 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt' 2025-05-30T09:08:18,519 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt' 2025-05-30T09:08:18,542 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt' 2025-05-30T09:08:18,570 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt' 2025-05-30T09:08:18,596 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt' 2025-05-30T09:08:18,615 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt' 2025-05-30T09:08:18,617 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt' 2025-05-30T09:08:18,636 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt' 2025-05-30T09:08:18,639 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt' 2025-05-30T09:08:18,642 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt' 2025-05-30T09:08:18,645 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt' 2025-05-30T09:08:18,652 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt' 2025-05-30T09:08:18,654 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt' 2025-05-30T09:08:18,656 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt' 2025-05-30T09:08:18,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt' 2025-05-30T09:08:18,660 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt' 2025-05-30T09:08:18,665 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt' 2025-05-30T09:08:18,667 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt' 2025-05-30T09:08:18,670 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt' 2025-05-30T09:08:18,674 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt' 2025-05-30T09:08:18,679 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt' 2025-05-30T09:08:18,683 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt' 2025-05-30T09:08:18,686 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt' 2025-05-30T09:08:18,690 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt' 2025-05-30T09:08:18,695 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt' 2025-05-30T09:08:18,699 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt' 2025-05-30T09:08:18,701 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py' 2025-05-30T09:08:18,708 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt' 2025-05-30T09:08:18,720 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt' 2025-05-30T09:08:18,730 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt' 2025-05-30T09:08:18,733 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt' 2025-05-30T09:08:18,738 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt' 2025-05-30T09:08:18,744 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt' 2025-05-30T09:08:18,750 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt' 2025-05-30T09:08:18,760 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt' 2025-05-30T09:08:18,763 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt' 2025-05-30T09:08:18,775 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt' 2025-05-30T09:08:18,797 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt' 2025-05-30T09:08:18,802 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt' 2025-05-30T09:08:18,804 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt' 2025-05-30T09:08:18,808 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt' 2025-05-30T09:08:18,820 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt' 2025-05-30T09:08:18,831 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt' 2025-05-30T09:08:18,838 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt' 2025-05-30T09:08:18,846 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt' 2025-05-30T09:08:18,856 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt' 2025-05-30T09:08:18,864 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt' 2025-05-30T09:08:18,870 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt' 2025-05-30T09:08:18,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt' 2025-05-30T09:08:18,885 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt' 2025-05-30T09:08:18,887 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt' 2025-05-30T09:08:18,894 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt' 2025-05-30T09:08:18,905 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt' 2025-05-30T09:08:18,914 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt' 2025-05-30T09:08:18,917 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt' 2025-05-30T09:08:18,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt' 2025-05-30T09:08:18,925 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt' 2025-05-30T09:08:18,932 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt' 2025-05-30T09:08:18,942 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt' 2025-05-30T09:08:18,944 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt' 2025-05-30T09:08:18,956 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt' 2025-05-30T09:08:18,978 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt' 2025-05-30T09:08:18,983 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt' 2025-05-30T09:08:18,985 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt' 2025-05-30T09:08:18,989 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt' 2025-05-30T09:08:19,001 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt' 2025-05-30T09:08:19,011 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt' 2025-05-30T09:08:19,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt' 2025-05-30T09:08:19,026 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt' 2025-05-30T09:08:19,036 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt' 2025-05-30T09:08:19,044 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt' 2025-05-30T09:08:19,050 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt' 2025-05-30T09:08:19,057 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt' 2025-05-30T09:08:19,065 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt' 2025-05-30T09:08:19,066 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt' 2025-05-30T09:08:19,089 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt' 2025-05-30T09:08:19,120 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt' 2025-05-30T09:08:19,150 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt' 2025-05-30T09:08:19,178 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt' 2025-05-30T09:08:19,180 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt' 2025-05-30T09:08:19,229 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt' 2025-05-30T09:08:19,256 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt' 2025-05-30T09:08:19,263 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt' 2025-05-30T09:08:19,267 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt' 2025-05-30T09:08:19,271 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt' 2025-05-30T09:08:19,274 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt' 2025-05-30T09:08:19,277 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt' 2025-05-30T09:08:19,281 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt' 2025-05-30T09:08:19,284 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt' 2025-05-30T09:08:19,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt' 2025-05-30T09:08:19,295 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt' 2025-05-30T09:08:19,297 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt' 2025-05-30T09:08:19,310 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt' 2025-05-30T09:08:19,318 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt' 2025-05-30T09:08:19,322 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt' 2025-05-30T09:08:19,324 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt' 2025-05-30T09:08:19,327 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt' 2025-05-30T09:08:19,331 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt' 2025-05-30T09:08:19,334 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt' 2025-05-30T09:08:19,337 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt' 2025-05-30T09:08:19,341 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt' 2025-05-30T09:08:19,344 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt' 2025-05-30T09:08:19,346 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt' 2025-05-30T09:08:19,352 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt' 2025-05-30T09:08:19,355 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt' 2025-05-30T09:08:19,357 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt' 2025-05-30T09:08:19,359 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt' 2025-05-30T09:08:19,361 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt' 2025-05-30T09:08:19,364 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt' 2025-05-30T09:08:19,366 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt' 2025-05-30T09:08:19,368 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt' 2025-05-30T09:08:19,370 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt' 2025-05-30T09:08:19,372 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt' 2025-05-30T09:08:19,376 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt' 2025-05-30T09:08:19,380 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt' 2025-05-30T09:08:19,389 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt' 2025-05-30T09:08:19,396 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt' 2025-05-30T09:08:19,402 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt' 2025-05-30T09:08:19,406 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt' 2025-05-30T09:08:19,416 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt' 2025-05-30T09:08:19,423 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt' 2025-05-30T09:08:19,432 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt' 2025-05-30T09:08:19,447 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt' 2025-05-30T09:08:19,453 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt' 2025-05-30T09:08:19,459 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt' 2025-05-30T09:08:19,466 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt' 2025-05-30T09:08:19,473 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt' 2025-05-30T09:08:19,478 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt' 2025-05-30T09:08:19,487 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt' 2025-05-30T09:08:19,491 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt' 2025-05-30T09:08:19,497 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt' 2025-05-30T09:08:19,509 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt' 2025-05-30T09:08:19,529 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt' 2025-05-30T09:08:19,539 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt' 2025-05-30T09:08:19,552 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt' 2025-05-30T09:08:19,566 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt' 2025-05-30T09:08:19,577 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt' 2025-05-30T09:08:19,597 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt' 2025-05-30T09:08:19,606 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt' 2025-05-30T09:08:19,617 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt' 2025-05-30T09:08:19,626 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt' 2025-05-30T09:08:19,628 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt' 2025-05-30T09:08:19,638 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt' 2025-05-30T09:08:19,653 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt' 2025-05-30T09:08:19,659 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt' 2025-05-30T09:08:19,666 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt' 2025-05-30T09:08:19,673 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt' 2025-05-30T09:08:19,680 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt' 2025-05-30T09:08:19,685 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt' 2025-05-30T09:08:19,693 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt' 2025-05-30T09:08:19,697 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt' 2025-05-30T09:08:19,703 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt' 2025-05-30T09:08:19,715 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt' 2025-05-30T09:08:19,734 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt' 2025-05-30T09:08:19,744 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt' 2025-05-30T09:08:19,757 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt' 2025-05-30T09:08:19,770 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt' 2025-05-30T09:08:19,781 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt' 2025-05-30T09:08:19,801 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt' 2025-05-30T09:08:19,810 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt' 2025-05-30T09:08:19,821 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt' 2025-05-30T09:08:19,830 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt' 2025-05-30T09:08:19,832 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt' 2025-05-30T09:08:19,842 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt' 2025-05-30T09:08:19,857 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt' 2025-05-30T09:08:19,863 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt' 2025-05-30T09:08:19,870 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt' 2025-05-30T09:08:19,877 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt' 2025-05-30T09:08:19,884 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt' 2025-05-30T09:08:19,889 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt' 2025-05-30T09:08:19,898 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt' 2025-05-30T09:08:19,902 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt' 2025-05-30T09:08:19,908 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt' 2025-05-30T09:08:19,920 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt' 2025-05-30T09:08:19,939 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt' 2025-05-30T09:08:19,949 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt' 2025-05-30T09:08:19,963 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt' 2025-05-30T09:08:19,976 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt' 2025-05-30T09:08:19,987 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt' 2025-05-30T09:08:20,008 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt' 2025-05-30T09:08:20,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt' 2025-05-30T09:08:20,030 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt' 2025-05-30T09:08:20,038 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt' 2025-05-30T09:08:20,039 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt' 2025-05-30T09:08:20,055 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt' 2025-05-30T09:08:20,060 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt' 2025-05-30T09:08:20,065 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt' 2025-05-30T09:08:20,070 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt' 2025-05-30T09:08:20,075 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt' 2025-05-30T09:08:20,081 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt' 2025-05-30T09:08:20,085 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt' 2025-05-30T09:08:20,090 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt' 2025-05-30T09:08:20,094 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt' 2025-05-30T09:08:20,098 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt' 2025-05-30T09:08:20,132 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt' 2025-05-30T09:08:20,137 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt' 2025-05-30T09:08:20,151 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt' 2025-05-30T09:08:20,170 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt' 2025-05-30T09:08:20,184 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt' 2025-05-30T09:08:20,199 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt' 2025-05-30T09:08:20,209 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt' 2025-05-30T09:08:20,222 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt' 2025-05-30T09:08:20,234 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt' 2025-05-30T09:08:20,241 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt' 2025-05-30T09:08:20,243 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt' 2025-05-30T09:08:20,250 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt' 2025-05-30T09:08:20,252 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt' 2025-05-30T09:08:20,271 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt' 2025-05-30T09:08:20,278 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt' 2025-05-30T09:08:20,285 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt' 2025-05-30T09:08:20,292 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt' 2025-05-30T09:08:20,300 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt' 2025-05-30T09:08:20,307 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt' 2025-05-30T09:08:20,314 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt' 2025-05-30T09:08:20,321 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt' 2025-05-30T09:08:20,326 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt' 2025-05-30T09:08:20,332 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt' 2025-05-30T09:08:20,373 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt' 2025-05-30T09:08:20,379 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt' 2025-05-30T09:08:20,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt' 2025-05-30T09:08:20,423 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt' 2025-05-30T09:08:20,443 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt' 2025-05-30T09:08:20,462 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt' 2025-05-30T09:08:20,475 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt' 2025-05-30T09:08:20,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt' 2025-05-30T09:08:20,507 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt' 2025-05-30T09:08:20,516 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt' 2025-05-30T09:08:20,518 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt' 2025-05-30T09:08:20,530 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt' 2025-05-30T09:08:20,532 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt' 2025-05-30T09:08:20,534 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt' 2025-05-30T09:08:20,537 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt' 2025-05-30T09:08:20,544 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt' 2025-05-30T09:08:20,546 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt' 2025-05-30T09:08:20,548 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt' 2025-05-30T09:08:20,550 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt' 2025-05-30T09:08:20,554 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt' 2025-05-30T09:08:20,556 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt' 2025-05-30T09:08:20,559 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt' 2025-05-30T09:08:20,562 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt' 2025-05-30T09:08:20,567 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt' 2025-05-30T09:08:20,570 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt' 2025-05-30T09:08:20,573 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt' 2025-05-30T09:08:20,576 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt' 2025-05-30T09:08:20,580 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt' 2025-05-30T09:08:20,583 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt' 2025-05-30T09:08:20,588 adding 'SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py' 2025-05-30T09:08:20,600 adding 'SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py' 2025-05-30T09:08:20,607 adding 'SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py' 2025-05-30T09:08:20,613 adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py' 2025-05-30T09:08:20,615 adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py' 2025-05-30T09:08:20,616 adding 'SigProfilerMatrixGenerator/scripts/__init__.py' 2025-05-30T09:08:20,619 adding 'SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py' 2025-05-30T09:08:20,620 adding 'SigProfilerMatrixGenerator/scripts/ref_install.py' 2025-05-30T09:08:20,624 adding 'SigProfilerMatrixGenerator/scripts/reference_genome_manager.py' 2025-05-30T09:08:20,625 adding 'SigProfilerMatrixGenerator/scripts/save_chrom_strings.py' 2025-05-30T09:08:20,627 adding 'SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py' 2025-05-30T09:08:20,630 adding 'SigProfilerMatrixGenerator/scripts/save_context_distribution.py' 2025-05-30T09:08:20,633 adding 'SigProfilerMatrixGenerator/scripts/save_tsb_192.py' 2025-05-30T09:08:20,635 adding 'SigProfilerMatrixGenerator/scripts/vcfToBedpe.py' 2025-05-30T09:08:20,657 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt' 2025-05-30T09:08:20,659 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt' 2025-05-30T09:08:20,679 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt' 2025-05-30T09:08:20,681 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt' 2025-05-30T09:08:20,682 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py' 2025-05-30T09:08:20,705 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt' 2025-05-30T09:08:20,707 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt' 2025-05-30T09:08:20,728 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt' 2025-05-30T09:08:20,729 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt' 2025-05-30T09:08:20,732 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/licenses/LICENSE' 2025-05-30T09:08:20,734 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/METADATA' 2025-05-30T09:08:20,735 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/WHEEL' 2025-05-30T09:08:20,736 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/entry_points.txt' 2025-05-30T09:08:20,737 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/top_level.txt' 2025-05-30T09:08:20,756 adding 'sigprofilermatrixgenerator-1.3.2.dist-info/RECORD' 2025-05-30T09:08:21,291 removing build/bdist.linux-armv7l/wheel 2025-05-30T09:08:21,808 Building wheel for sigprofilermatrixgenerator (setup.py): finished with status 'done' 2025-05-30T09:08:23,129 Created wheel for sigprofilermatrixgenerator: filename=sigprofilermatrixgenerator-1.3.2-py3-none-any.whl size=47467197 sha256=c19d2b53cd85084dcae0c5b7f70a34a08ef51bec35a32564c5654b99cb45ed89 2025-05-30T09:08:23,130 Stored in directory: /tmp/pip-ephem-wheel-cache-pds364hj/wheels/7f/28/87/90221a9fbcf54e61df65c36a723d6de345a234a9d6425a5b6e 2025-05-30T09:08:29,584 Successfully built sigprofilermatrixgenerator 2025-05-30T09:08:31,078 Removed build tracker: '/tmp/pip-build-tracker-iovwqq73'