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https://files.pythonhosted.org/packages/54/ad/b1d223661c615f621ccf9d96d56e2cac4aff237ab7b67df89de87e97856a/biorefineries-2.24.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.24.0 2025-05-30T20:34:53,686 Found link https://files.pythonhosted.org/packages/cb/cd/2c6590a3707b128e2e18f88e5e8bafc11f66c696b13cd48a8d3904c1a7e9/biorefineries-2.25.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.25.0 2025-05-30T20:34:53,686 Found link https://files.pythonhosted.org/packages/0a/fb/ab19a7d509067bd1a3e6b5a3206353f76a20d0560a993bcc54f3834271d1/biorefineries-2.26.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.0 2025-05-30T20:34:53,687 Found link https://files.pythonhosted.org/packages/aa/11/6b1b4699e6f73e913ad9aba24dcc47b4bf71326f89560a9991da01d2ce2a/biorefineries-2.26.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.1 2025-05-30T20:34:53,688 Found link https://files.pythonhosted.org/packages/bd/27/da932b8ccd134a8cf91e3255a895f0e7b4ca5be730f4f647aaaf5707b129/biorefineries-2.26.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.2 2025-05-30T20:34:53,689 Found link https://files.pythonhosted.org/packages/a1/be/361e29090e4c191970a776e0825984963b7af2af3b3e187478dfa7fd1aeb/biorefineries-2.26.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.3 2025-05-30T20:34:53,690 Found link https://files.pythonhosted.org/packages/8c/93/3f84da15e7cae7dc3ea52b9aecbc04ec3c0a94a38a1dd37fb5ee19db62d5/biorefineries-2.27.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.27.0 2025-05-30T20:34:53,690 Found link https://files.pythonhosted.org/packages/fc/5b/dfbd1b69f7a3973cab60cb6b5956beea3b592f4dc52dfd5e22debaaa1eb4/biorefineries-2.28.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.28.0 2025-05-30T20:34:53,691 Found link https://files.pythonhosted.org/packages/a0/61/1dc078b2a9edb2aa6bbb811ef0284a2ce28ede5c47e4cdfa2a91e2af8602/biorefineries-2.29.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.29.0 2025-05-30T20:34:53,692 Found link https://files.pythonhosted.org/packages/43/d5/88b9e32b0aca0f72eeaa244a249a3506e535fac5aad149d9f07095eaf234/biorefineries-2.30.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.30.0 2025-05-30T20:34:53,692 Found link https://files.pythonhosted.org/packages/98/98/25db2013c0782c05b56be59643001bb6eb957774aab20bcde13c565dd393/biorefineries-2.31.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.31.0 2025-05-30T20:34:53,693 Found link https://files.pythonhosted.org/packages/e0/73/94787709c74a6024177a42f16af9934dec2d00a01fd8248e2c0783e5c4eb/biorefineries-2.32.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.0 2025-05-30T20:34:53,694 Found link https://files.pythonhosted.org/packages/00/b3/a660dd043e4da0555f31eb963f6db57871d72ea292e21ac069e07e08261a/biorefineries-2.32.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.1 2025-05-30T20:34:53,695 Found link https://files.pythonhosted.org/packages/f5/df/e2806eb3a5d1cc2fce1d47b9eee568041b7ba168e5f79a254e40bc31d567/biorefineries-2.32.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.2 2025-05-30T20:34:53,696 Found link https://files.pythonhosted.org/packages/1a/01/a509b9fa25b473c4946e5d0e473ac9e8487155fcde435faf732381059ed3/biorefineries-2.34.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.0 2025-05-30T20:34:53,697 Found link https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.1 2025-05-30T20:34:53,698 Found link https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.2 2025-05-30T20:34:53,699 Found link https://files.pythonhosted.org/packages/d0/18/21936150b0aaced289ca0ce66b8c1849aea0e6b697c37c30366c4544bc3c/biorefineries-2.34.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.3 2025-05-30T20:34:53,699 Found link https://files.pythonhosted.org/packages/eb/30/282559d3858fee72e9ac2f0243c9a6e2d6107c452cc0a2a81c800c08f0da/biorefineries-2.34.4.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.4 2025-05-30T20:34:53,700 Found link https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.5 2025-05-30T20:34:53,701 Found link https://files.pythonhosted.org/packages/de/e5/75d96878c9156b59227c4b9587466d58b879f91b48ae509ed2d44a604f58/biorefineries-2.34.6.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.6 2025-05-30T20:34:53,702 Found link https://files.pythonhosted.org/packages/dc/f0/7645088da65009a981a08e0d0c7e21342e4fa9e7a1ab0392ed25e88c63a7/biorefineries-2.34.7.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.7 2025-05-30T20:34:53,703 Found link https://files.pythonhosted.org/packages/24/6f/2fbd894ecce9381baa00fa7d057bbc742b1665d759149b70b6a41ca8b045/biorefineries-2.34.8.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.8 2025-05-30T20:34:53,704 Found link https://files.pythonhosted.org/packages/e0/fb/df23010230202a6caf5a966342497ab01795297ce3ee4212b15143e8c5ce/biorefineries-2.34.9.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.9 2025-05-30T20:34:53,704 Found link https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.10 2025-05-30T20:34:53,706 Fetching project page and analyzing links: https://www.piwheels.org/simple/biorefineries/ 2025-05-30T20:34:53,706 Getting page https://www.piwheels.org/simple/biorefineries/ 2025-05-30T20:34:53,708 Found index url https://www.piwheels.org/simple/ 2025-05-30T20:34:53,875 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-05-30T20:34:54,541 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-05-30T20:34:55,708 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-05-30T20:34:57,878 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-05-30T20:35:02,051 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-05-30T20:35:02,220 Could not fetch URL https://www.piwheels.org/simple/biorefineries/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biorefineries/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T20:35:02,222 Skipping link: not a file: https://www.piwheels.org/simple/biorefineries/ 2025-05-30T20:35:02,222 Skipping link: not a file: https://pypi.org/simple/biorefineries/ 2025-05-30T20:35:02,259 Given no hashes to check 1 links for project 'biorefineries': discarding no candidates 2025-05-30T20:35:02,262 Collecting biorefineries==2.34.1 2025-05-30T20:35:02,265 Created temporary directory: /tmp/pip-unpack-12vnp4jd 2025-05-30T20:35:02,710 Downloading biorefineries-2.34.1.tar.gz (10.9 MB) 2025-05-30T20:35:06,198 Added biorefineries==2.34.1 from https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz to build tracker '/tmp/pip-build-tracker-9oorqpw6' 2025-05-30T20:35:06,200 Running setup.py (path:/tmp/pip-wheel-bivuzj9y/biorefineries_91f334bd93fc4a3bb37ea22b6491289b/setup.py) egg_info for package biorefineries 2025-05-30T20:35:06,201 Created temporary directory: /tmp/pip-pip-egg-info-8f63u5vi 2025-05-30T20:35:06,201 Preparing metadata (setup.py): started 2025-05-30T20:35:06,202 Running command python setup.py egg_info 2025-05-30T20:35:07,041 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T20:35:07,041 !! 2025-05-30T20:35:07,042 ******************************************************************************** 2025-05-30T20:35:07,042 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T20:35:07,043 License :: OSI Approved :: MIT License 2025-05-30T20:35:07,044 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T20:35:07,045 ******************************************************************************** 2025-05-30T20:35:07,046 !! 2025-05-30T20:35:07,046 self._finalize_license_expression() 2025-05-30T20:35:07,073 running egg_info 2025-05-30T20:35:07,101 creating /tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info 2025-05-30T20:35:07,102 writing /tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/PKG-INFO 2025-05-30T20:35:07,106 writing dependency_links to /tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/dependency_links.txt 2025-05-30T20:35:07,108 writing requirements to /tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/requires.txt 2025-05-30T20:35:07,110 writing top-level names to /tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/top_level.txt 2025-05-30T20:35:07,111 writing manifest file '/tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/SOURCES.txt' 2025-05-30T20:35:07,246 reading manifest file '/tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/SOURCES.txt' 2025-05-30T20:35:07,248 adding license file 'LICENSE.txt' 2025-05-30T20:35:07,259 writing manifest file '/tmp/pip-pip-egg-info-8f63u5vi/biorefineries.egg-info/SOURCES.txt' 2025-05-30T20:35:07,364 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T20:35:07,369 Source in /tmp/pip-wheel-bivuzj9y/biorefineries_91f334bd93fc4a3bb37ea22b6491289b has version 2.34.1, which satisfies requirement biorefineries==2.34.1 from https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz 2025-05-30T20:35:07,369 Removed biorefineries==2.34.1 from https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz from build tracker '/tmp/pip-build-tracker-9oorqpw6' 2025-05-30T20:35:07,375 Created temporary directory: /tmp/pip-unpack-cmxl6zvu 2025-05-30T20:35:07,376 Created temporary directory: /tmp/pip-unpack-vjuizt95 2025-05-30T20:35:07,377 Building wheels for collected packages: biorefineries 2025-05-30T20:35:07,381 Created temporary directory: /tmp/pip-wheel-zlv7skn0 2025-05-30T20:35:07,382 DEPRECATION: Building 'biorefineries' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biorefineries'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T20:35:07,383 Building wheel for biorefineries (setup.py): started 2025-05-30T20:35:07,385 Destination directory: /tmp/pip-wheel-zlv7skn0 2025-05-30T20:35:07,385 Running command python setup.py bdist_wheel 2025-05-30T20:35:08,218 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T20:35:08,219 !! 2025-05-30T20:35:08,220 ******************************************************************************** 2025-05-30T20:35:08,220 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T20:35:08,221 License :: OSI Approved :: MIT License 2025-05-30T20:35:08,222 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T20:35:08,223 ******************************************************************************** 2025-05-30T20:35:08,224 !! 2025-05-30T20:35:08,224 self._finalize_license_expression() 2025-05-30T20:35:08,225 running bdist_wheel 2025-05-30T20:35:08,356 running build 2025-05-30T20:35:08,357 running build_py 2025-05-30T20:35:08,387 creating build/lib/biorefineries 2025-05-30T20:35:08,389 copying biorefineries/__init__.py -> build/lib/biorefineries 2025-05-30T20:35:08,420 creating build/lib/biorefineries/cane 2025-05-30T20:35:08,421 copying biorefineries/cane/uncertainty_plots.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,426 copying biorefineries/cane/tables.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,428 copying biorefineries/cane/__init__.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,430 copying biorefineries/cane/units.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,433 copying biorefineries/cane/oil_extraction.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,436 copying biorefineries/cane/feature_mockups.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,439 copying biorefineries/cane/rename_soon.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,442 copying biorefineries/cane/results.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,445 copying biorefineries/cane/composition.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,448 copying biorefineries/cane/README.md -> build/lib/biorefineries/cane 2025-05-30T20:35:08,452 copying biorefineries/cane/chemicals.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,455 copying biorefineries/cane/process_settings.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,458 copying biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/lib/biorefineries/cane 2025-05-30T20:35:08,462 copying biorefineries/cane/evaluation.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,465 copying biorefineries/cane/streams.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,467 copying biorefineries/cane/biorefinery.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,472 copying biorefineries/cane/parse_configuration.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,474 copying biorefineries/cane/contour_plots.py -> build/lib/biorefineries/cane 2025-05-30T20:35:08,478 creating build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,479 copying biorefineries/cane/systems/fermentation.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,483 copying biorefineries/cane/systems/__init__.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,485 copying biorefineries/cane/systems/biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,488 copying biorefineries/cane/systems/lipidcane.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,491 copying biorefineries/cane/systems/biodiesel.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,493 copying biorefineries/cane/systems/juicing.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,496 copying biorefineries/cane/systems/bagasse.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,499 copying biorefineries/cane/systems/pretreatment.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,501 copying biorefineries/cane/systems/cellulosic_biodiesel.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,504 copying biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,506 copying biorefineries/cane/systems/lipid_extraction.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,509 copying biorefineries/cane/systems/sugar.py -> build/lib/biorefineries/cane/systems 2025-05-30T20:35:08,512 creating build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,513 copying biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,515 copying biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,518 copying biorefineries/cane/systems/oilcane/__init__.py -> build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,520 copying biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,522 copying biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-05-30T20:35:08,525 creating build/lib/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:08,526 copying biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:08,528 copying biorefineries/cane/systems/sugarcane/__init__.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:08,531 copying biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:08,534 copying biorefineries/cane/systems/sugarcane/ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:08,536 creating build/lib/biorefineries/milk 2025-05-30T20:35:08,538 copying biorefineries/milk/systems.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,540 copying biorefineries/milk/__init__.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,543 copying biorefineries/milk/units.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,545 copying biorefineries/milk/plots.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,548 copying biorefineries/milk/data.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,550 copying biorefineries/milk/tests.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,552 copying biorefineries/milk/uncertainty.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,556 copying biorefineries/milk/README.md -> build/lib/biorefineries/milk 2025-05-30T20:35:08,558 copying biorefineries/milk/chemicals.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,561 copying biorefineries/milk/process_settings.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,563 copying biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/lib/biorefineries/milk 2025-05-30T20:35:08,592 copying biorefineries/milk/biorefinery.py -> build/lib/biorefineries/milk 2025-05-30T20:35:08,595 creating build/lib/biorefineries/milk/images 2025-05-30T20:35:08,596 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,601 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,605 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,619 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,629 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,643 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/lib/biorefineries/milk/images 2025-05-30T20:35:08,648 creating build/lib/biorefineries/milk/results 2025-05-30T20:35:08,649 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-05-30T20:35:08,652 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/lib/biorefineries/milk/results 2025-05-30T20:35:08,655 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-05-30T20:35:08,658 creating build/lib/biorefineries/cane/data 2025-05-30T20:35:08,660 copying biorefineries/cane/data/price_distributions_2023.py -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,663 copying biorefineries/cane/data/cane_composition_data_full.xlsx -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,667 copying biorefineries/cane/data/price_distributions_2022.py -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,670 copying biorefineries/cane/data/lca_characterization_factors.py -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,673 copying biorefineries/cane/data/RIN_prices_2023.csv -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,684 copying biorefineries/cane/data/RIN_prices_2022.csv -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,693 copying biorefineries/cane/data/cane_composition_data.xlsx -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,696 copying biorefineries/cane/data/microbial_oil_baseline.py -> build/lib/biorefineries/cane/data 2025-05-30T20:35:08,699 creating build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,700 copying biorefineries/cellulosic/__init__.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,702 copying biorefineries/cellulosic/units.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,706 copying biorefineries/cellulosic/chemicals.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,709 copying biorefineries/cellulosic/process_settings.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,711 copying biorefineries/cellulosic/streams.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,714 copying biorefineries/cellulosic/biorefinery.py -> build/lib/biorefineries/cellulosic 2025-05-30T20:35:08,716 creating build/lib/biorefineries/cellulosic/systems 2025-05-30T20:35:08,718 copying biorefineries/cellulosic/systems/__init__.py -> build/lib/biorefineries/cellulosic/systems 2025-05-30T20:35:08,720 copying biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/lib/biorefineries/cellulosic/systems 2025-05-30T20:35:08,723 creating build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,724 copying biorefineries/cellulosic/systems/fermentation/__init__.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,727 copying biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,731 copying biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,734 copying biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,737 copying biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,739 copying biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:08,742 creating build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,744 copying biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,747 copying biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,749 copying biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,751 copying biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,754 copying biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:08,757 creating build/lib/biorefineries/ethanol 2025-05-30T20:35:08,758 copying biorefineries/ethanol/systems.py -> build/lib/biorefineries/ethanol 2025-05-30T20:35:08,761 copying biorefineries/ethanol/__init__.py -> build/lib/biorefineries/ethanol 2025-05-30T20:35:08,764 copying biorefineries/ethanol/streams.py -> build/lib/biorefineries/ethanol 2025-05-30T20:35:08,766 creating build/lib/biorefineries/biodiesel 2025-05-30T20:35:08,767 copying biorefineries/biodiesel/systems.py -> build/lib/biorefineries/biodiesel 2025-05-30T20:35:08,770 copying biorefineries/biodiesel/__init__.py -> build/lib/biorefineries/biodiesel 2025-05-30T20:35:08,773 copying biorefineries/biodiesel/streams.py -> build/lib/biorefineries/biodiesel 2025-05-30T20:35:08,775 creating build/lib/biorefineries/biodiesel/units 2025-05-30T20:35:08,777 copying biorefineries/biodiesel/units/__init__.py -> build/lib/biorefineries/biodiesel/units 2025-05-30T20:35:08,781 copying biorefineries/biodiesel/units/transesterification.py -> build/lib/biorefineries/biodiesel/units 2025-05-30T20:35:08,783 copying biorefineries/biodiesel/units/skimming_tank.py -> build/lib/biorefineries/biodiesel/units 2025-05-30T20:35:08,786 copying biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/lib/biorefineries/biodiesel/units 2025-05-30T20:35:08,788 creating build/lib/biorefineries/tea 2025-05-30T20:35:08,789 copying biorefineries/tea/__init__.py -> build/lib/biorefineries/tea 2025-05-30T20:35:08,792 copying biorefineries/tea/cellulosic_ethanol_tea.py -> build/lib/biorefineries/tea 2025-05-30T20:35:08,795 copying biorefineries/tea/conventional_ethanol_tea.py -> build/lib/biorefineries/tea 2025-05-30T20:35:08,798 creating build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,799 copying biorefineries/lipidcane/_feedstock_analysis.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,802 copying biorefineries/lipidcane/_process_settings.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,804 copying biorefineries/lipidcane/_tea.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,807 copying biorefineries/lipidcane/__init__.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,809 copying biorefineries/lipidcane/README.rst -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,812 copying biorefineries/lipidcane/_system.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,815 copying biorefineries/lipidcane/_webapp_model.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,817 copying biorefineries/lipidcane/_plot_uncertainty.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,821 copying biorefineries/lipidcane/_chemicals.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:08,823 copying biorefineries/lipidcane/sankey_plot.ipynb -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:09,013 copying biorefineries/lipidcane/model.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:09,016 copying biorefineries/lipidcane/_analysis.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:09,019 copying biorefineries/lipidcane/_plot_spearman.py -> build/lib/biorefineries/lipidcane 2025-05-30T20:35:09,021 creating build/lib/biorefineries/oilcane 2025-05-30T20:35:09,022 copying biorefineries/oilcane/_uncertainty_plots.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,025 copying biorefineries/oilcane/lca_benchmarks.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,028 copying biorefineries/oilcane/systems.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,030 copying biorefineries/oilcane/_tea.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,032 copying biorefineries/oilcane/__init__.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,035 copying biorefineries/oilcane/_parse_configuration.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,037 copying biorefineries/oilcane/units.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,040 copying biorefineries/oilcane/sankey_energy.ipynb -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,255 copying biorefineries/oilcane/_evaluation.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,258 copying biorefineries/oilcane/README.md -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,261 copying biorefineries/oilcane/_line_plots.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,264 copying biorefineries/oilcane/utils.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,267 copying biorefineries/oilcane/_chemicals.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,269 copying biorefineries/oilcane/sankey_plot.ipynb -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,273 copying biorefineries/oilcane/webapp_model.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,276 copying biorefineries/oilcane/_tables.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,278 copying biorefineries/oilcane/_feature_mockups.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,281 copying biorefineries/oilcane/_contour_plots.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,284 copying biorefineries/oilcane/_load_data.py -> build/lib/biorefineries/oilcane 2025-05-30T20:35:09,288 creating build/lib/biorefineries/cornstover 2025-05-30T20:35:09,289 copying biorefineries/cornstover/_process_settings.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,292 copying biorefineries/cornstover/systems.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,294 copying biorefineries/cornstover/_tea.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,297 copying biorefineries/cornstover/__init__.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,299 copying biorefineries/cornstover/README.rst -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,302 copying biorefineries/cornstover/units.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,305 copying biorefineries/cornstover/_sankey.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,308 copying biorefineries/cornstover/_plot_uncertainty.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,311 copying biorefineries/cornstover/_chemicals.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,313 copying biorefineries/cornstover/model.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,316 copying biorefineries/cornstover/webapp_model.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,319 copying biorefineries/cornstover/_analysis.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,321 copying biorefineries/cornstover/_plot_bars.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,323 copying biorefineries/cornstover/_switchgrass.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,326 copying biorefineries/cornstover/_plot_single_point.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,329 copying biorefineries/cornstover/_plot_spearman.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,331 copying biorefineries/cornstover/_legacy_code.py -> build/lib/biorefineries/cornstover 2025-05-30T20:35:09,334 creating build/lib/biorefineries/corn 2025-05-30T20:35:09,335 copying biorefineries/corn/systems.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,338 copying biorefineries/corn/__init__.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,340 copying biorefineries/corn/units.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,344 copying biorefineries/corn/tea.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,347 copying biorefineries/corn/README.md -> build/lib/biorefineries/corn 2025-05-30T20:35:09,349 copying biorefineries/corn/utils.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,352 copying biorefineries/corn/chemicals.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,354 copying biorefineries/corn/process_settings.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,357 copying biorefineries/corn/biorefinery.py -> build/lib/biorefineries/corn 2025-05-30T20:35:09,359 creating build/lib/biorefineries/lactic 2025-05-30T20:35:09,360 copying biorefineries/lactic/_units.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,365 copying biorefineries/lactic/_process_settings.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,368 copying biorefineries/lactic/systems.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,371 copying biorefineries/lactic/_tea.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,373 copying biorefineries/lactic/__init__.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,376 copying biorefineries/lactic/README.rst -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,379 copying biorefineries/lactic/models.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,382 copying biorefineries/lactic/_profile.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,384 copying biorefineries/lactic/_processes.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,388 copying biorefineries/lactic/utils.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,391 copying biorefineries/lactic/_chemicals.py -> build/lib/biorefineries/lactic 2025-05-30T20:35:09,394 creating build/lib/biorefineries/lactic/analyses 2025-05-30T20:35:09,395 copying biorefineries/lactic/analyses/1_uncertainties.py -> build/lib/biorefineries/lactic/analyses 2025-05-30T20:35:09,398 copying biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/lib/biorefineries/lactic/analyses 2025-05-30T20:35:09,402 copying biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/lib/biorefineries/lactic/analyses 2025-05-30T20:35:09,404 creating build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,405 copying biorefineries/sugarcane/_process_settings.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,408 copying biorefineries/sugarcane/systems.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,410 copying biorefineries/sugarcane/_tea.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,412 copying biorefineries/sugarcane/__init__.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,415 copying biorefineries/sugarcane/README.rst -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,417 copying biorefineries/sugarcane/_chemicals.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,420 copying biorefineries/sugarcane/model.py -> build/lib/biorefineries/sugarcane 2025-05-30T20:35:09,422 creating build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,423 copying biorefineries/fattyalcohols/_tea.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,426 copying biorefineries/fattyalcohols/__init__.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,428 copying biorefineries/fattyalcohols/README.rst -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,431 copying biorefineries/fattyalcohols/_system.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,433 copying biorefineries/fattyalcohols/streams.yaml -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,435 copying biorefineries/fattyalcohols/_process_specifications.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,438 copying biorefineries/fattyalcohols/utils.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,440 copying biorefineries/fattyalcohols/chemicals.yaml -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,443 copying biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,446 copying biorefineries/fattyalcohols/_chemicals.py -> build/lib/biorefineries/fattyalcohols 2025-05-30T20:35:09,448 creating build/lib/biorefineries/fattyalcohols/units 2025-05-30T20:35:09,449 copying biorefineries/fattyalcohols/units/__init__.py -> build/lib/biorefineries/fattyalcohols/units 2025-05-30T20:35:09,451 copying biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/lib/biorefineries/fattyalcohols/units 2025-05-30T20:35:09,454 copying biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/lib/biorefineries/fattyalcohols/units 2025-05-30T20:35:09,456 creating build/lib/biorefineries/LAOs 2025-05-30T20:35:09,457 copying biorefineries/LAOs/_tea.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,459 copying biorefineries/LAOs/__init__.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,462 copying biorefineries/LAOs/README.rst -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,464 copying biorefineries/LAOs/_system.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,467 copying biorefineries/LAOs/streams.yaml -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,469 copying biorefineries/LAOs/_process_specifications.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,472 copying biorefineries/LAOs/utils.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,475 copying biorefineries/LAOs/chemicals.yaml -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,477 copying biorefineries/LAOs/analysis.ipynb -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,539 copying biorefineries/LAOs/_chemicals.py -> build/lib/biorefineries/LAOs 2025-05-30T20:35:09,541 creating build/lib/biorefineries/LAOs/units 2025-05-30T20:35:09,542 copying biorefineries/LAOs/units/__init__.py -> build/lib/biorefineries/LAOs/units 2025-05-30T20:35:09,544 copying biorefineries/LAOs/units/surge_tank.py -> build/lib/biorefineries/LAOs/units 2025-05-30T20:35:09,546 copying biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/lib/biorefineries/LAOs/units 2025-05-30T20:35:09,548 copying biorefineries/LAOs/units/nitrogen_generation_package.py -> build/lib/biorefineries/LAOs/units 2025-05-30T20:35:09,550 creating build/lib/biorefineries/abm 2025-05-30T20:35:09,551 copying biorefineries/abm/corn.py -> build/lib/biorefineries/abm 2025-05-30T20:35:09,554 copying biorefineries/abm/cornstover.py -> build/lib/biorefineries/abm 2025-05-30T20:35:09,557 copying biorefineries/abm/abm_yield_example.py -> build/lib/biorefineries/abm 2025-05-30T20:35:09,559 copying biorefineries/abm/breakdown.py -> build/lib/biorefineries/abm 2025-05-30T20:35:09,561 creating build/lib/biorefineries/acester 2025-05-30T20:35:09,562 copying biorefineries/acester/tables.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,565 copying biorefineries/acester/systems.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,568 copying biorefineries/acester/__init__.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,571 copying biorefineries/acester/units.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,573 copying biorefineries/acester/plots.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,576 copying biorefineries/acester/data.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,579 copying biorefineries/acester/tests.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,582 copying biorefineries/acester/uncertainty.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,586 copying biorefineries/acester/README.md -> build/lib/biorefineries/acester 2025-05-30T20:35:09,588 copying biorefineries/acester/chemicals.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,591 copying biorefineries/acester/process_settings.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,593 copying biorefineries/acester/biorefinery.py -> build/lib/biorefineries/acester 2025-05-30T20:35:09,596 creating build/lib/biorefineries/acester/images 2025-05-30T20:35:09,598 copying biorefineries/acester/images/sensitivity.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,602 copying biorefineries/acester/images/configuration_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,612 copying biorefineries/acester/images/spearman.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,620 copying biorefineries/acester/images/preliminary_flowsheet_with_auxiliaries.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,623 copying biorefineries/acester/images/monte_carlo_across_bioreactor_yield.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,627 copying biorefineries/acester/images/preliminary_flowsheet.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,630 copying biorefineries/acester/images/all fermentation-glucose growth_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,634 copying biorefineries/acester/images/uncertainty.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,637 copying biorefineries/acester/images/configuration_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,652 copying biorefineries/acester/images/kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,662 copying biorefineries/acester/images/oleochemical_yield_contours.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,677 copying biorefineries/acester/images/dewatering_comparison_cc_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,688 copying biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,699 copying biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,711 copying biorefineries/acester/images/montecarlo_absolute.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,717 copying biorefineries/acester/images/montecarlo_absolute.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,723 copying biorefineries/acester/images/MSP_CI_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,727 copying biorefineries/acester/images/preliminary_contour.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,731 copying biorefineries/acester/images/sensitivity.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,735 copying biorefineries/acester/images/AcEster_contours.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,740 copying biorefineries/acester/images/impact.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,744 copying biorefineries/acester/images/oleochemical_yield_contours.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,749 copying biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,760 copying biorefineries/acester/images/all fermentation-glucose growth_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,768 copying biorefineries/acester/images/AcOH_contours.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,773 copying biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,785 copying biorefineries/acester/images/impact.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,789 copying biorefineries/acester/images/H2_contours.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,793 copying biorefineries/acester/images/monte_carlo_across_bioreactor_yield.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,802 copying biorefineries/acester/images/dewatering_comparison_cc_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,813 copying biorefineries/acester/images/spearman.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,817 copying biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,822 copying biorefineries/acester/images/kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,831 copying biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,844 copying biorefineries/acester/images/dewatering_comparison_no_cc_kde.svg -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,853 copying biorefineries/acester/images/dewatering_comparison_no_cc_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,868 copying biorefineries/acester/images/MSP_CI_kde.png -> build/lib/biorefineries/acester/images 2025-05-30T20:35:09,874 creating build/lib/biorefineries/acester/results 2025-05-30T20:35:09,875 copying biorefineries/acester/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,879 copying biorefineries/acester/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,883 copying biorefineries/acester/results/all fermentation-acetate growth_monte_carlo_across_bioreactor_yield.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,885 copying biorefineries/acester/results/all fermentation-glucose growth_200 -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,888 copying biorefineries/acester/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,892 copying biorefineries/acester/results/all fermentation-glucose growth_spearman.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,894 copying biorefineries/acester/results/all fermentation-acetate growth_spearman.xlsx -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,897 copying biorefineries/acester/results/all fermentation-acetate growth_200 -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,900 copying biorefineries/acester/results/MSP_GWP_oleochemical_yield.npy -> build/lib/biorefineries/acester/results 2025-05-30T20:35:09,903 creating build/lib/biorefineries/acester/notebooks 2025-05-30T20:35:09,904 copying biorefineries/acester/notebooks/arpa_e_project.py -> build/lib/biorefineries/acester/notebooks 2025-05-30T20:35:09,907 creating build/lib/biorefineries/tests 2025-05-30T20:35:09,908 copying biorefineries/tests/__init__.py -> build/lib/biorefineries/tests 2025-05-30T20:35:09,910 copying biorefineries/tests/test_biorefineries.py -> build/lib/biorefineries/tests 2025-05-30T20:35:09,914 copying biorefineries/tests/run_readmes.py -> build/lib/biorefineries/tests 2025-05-30T20:35:09,950 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T20:35:09,950 !! 2025-05-30T20:35:09,951 ******************************************************************************** 2025-05-30T20:35:09,952 Please avoid running ``setup.py`` directly. 2025-05-30T20:35:09,953 Instead, use pypa/build, pypa/installer or other 2025-05-30T20:35:09,953 standards-based tools. 2025-05-30T20:35:09,954 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T20:35:09,955 or your builds will no longer be supported. 2025-05-30T20:35:09,956 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T20:35:09,957 ******************************************************************************** 2025-05-30T20:35:09,959 !! 2025-05-30T20:35:09,959 self.initialize_options() 2025-05-30T20:35:09,981 installing to build/bdist.linux-armv7l/wheel 2025-05-30T20:35:09,982 running install 2025-05-30T20:35:10,005 running install_lib 2025-05-30T20:35:10,033 creating build/bdist.linux-armv7l/wheel 2025-05-30T20:35:10,035 creating build/bdist.linux-armv7l/wheel/biorefineries 2025-05-30T20:35:10,037 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel 2025-05-30T20:35:10,038 copying build/lib/biorefineries/biodiesel/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-05-30T20:35:10,040 copying build/lib/biorefineries/biodiesel/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-05-30T20:35:10,043 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel/units 2025-05-30T20:35:10,044 copying build/lib/biorefineries/biodiesel/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-05-30T20:35:10,046 copying build/lib/biorefineries/biodiesel/units/transesterification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-05-30T20:35:10,048 copying build/lib/biorefineries/biodiesel/units/skimming_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-05-30T20:35:10,049 copying build/lib/biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-05-30T20:35:10,052 copying build/lib/biorefineries/biodiesel/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-05-30T20:35:10,054 creating build/bdist.linux-armv7l/wheel/biorefineries/tests 2025-05-30T20:35:10,056 copying build/lib/biorefineries/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-05-30T20:35:10,058 copying build/lib/biorefineries/tests/test_biorefineries.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-05-30T20:35:10,061 copying build/lib/biorefineries/tests/run_readmes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-05-30T20:35:10,064 creating build/bdist.linux-armv7l/wheel/biorefineries/oilcane 2025-05-30T20:35:10,065 copying build/lib/biorefineries/oilcane/_uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,069 copying build/lib/biorefineries/oilcane/lca_benchmarks.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,071 copying build/lib/biorefineries/oilcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,072 copying build/lib/biorefineries/oilcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,074 copying build/lib/biorefineries/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,076 copying build/lib/biorefineries/oilcane/_parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,078 copying build/lib/biorefineries/oilcane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,124 copying build/lib/biorefineries/oilcane/sankey_energy.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,206 copying build/lib/biorefineries/oilcane/_evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,209 copying build/lib/biorefineries/oilcane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,212 copying build/lib/biorefineries/oilcane/_line_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,214 copying build/lib/biorefineries/oilcane/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,217 copying build/lib/biorefineries/oilcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,219 copying build/lib/biorefineries/oilcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,223 copying build/lib/biorefineries/oilcane/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,225 copying build/lib/biorefineries/oilcane/_tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,227 copying build/lib/biorefineries/oilcane/_feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,229 copying build/lib/biorefineries/oilcane/_contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,232 copying build/lib/biorefineries/oilcane/_load_data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-05-30T20:35:10,235 copying build/lib/biorefineries/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries 2025-05-30T20:35:10,237 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic 2025-05-30T20:35:10,238 copying build/lib/biorefineries/lactic/_units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,243 copying build/lib/biorefineries/lactic/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,246 copying build/lib/biorefineries/lactic/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,248 copying build/lib/biorefineries/lactic/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,251 copying build/lib/biorefineries/lactic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,253 copying build/lib/biorefineries/lactic/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,256 copying build/lib/biorefineries/lactic/models.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,259 copying build/lib/biorefineries/lactic/_profile.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,261 copying build/lib/biorefineries/lactic/_processes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,264 copying build/lib/biorefineries/lactic/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,267 copying build/lib/biorefineries/lactic/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-05-30T20:35:10,270 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic/analyses 2025-05-30T20:35:10,271 copying build/lib/biorefineries/lactic/analyses/1_uncertainties.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-05-30T20:35:10,274 copying build/lib/biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-05-30T20:35:10,276 copying build/lib/biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-05-30T20:35:10,280 creating build/bdist.linux-armv7l/wheel/biorefineries/corn 2025-05-30T20:35:10,281 copying build/lib/biorefineries/corn/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,284 copying build/lib/biorefineries/corn/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,286 copying build/lib/biorefineries/corn/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,288 copying build/lib/biorefineries/corn/tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,291 copying build/lib/biorefineries/corn/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,293 copying build/lib/biorefineries/corn/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,295 copying build/lib/biorefineries/corn/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,297 copying build/lib/biorefineries/corn/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,300 copying build/lib/biorefineries/corn/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-05-30T20:35:10,302 creating build/bdist.linux-armv7l/wheel/biorefineries/abm 2025-05-30T20:35:10,304 copying build/lib/biorefineries/abm/corn.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-05-30T20:35:10,306 copying build/lib/biorefineries/abm/cornstover.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-05-30T20:35:10,308 copying build/lib/biorefineries/abm/abm_yield_example.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-05-30T20:35:10,310 copying build/lib/biorefineries/abm/breakdown.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-05-30T20:35:10,313 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic 2025-05-30T20:35:10,314 copying build/lib/biorefineries/cellulosic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,315 copying build/lib/biorefineries/cellulosic/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,319 copying build/lib/biorefineries/cellulosic/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,321 copying build/lib/biorefineries/cellulosic/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,324 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems 2025-05-30T20:35:10,325 copying build/lib/biorefineries/cellulosic/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-05-30T20:35:10,328 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,329 copying build/lib/biorefineries/cellulosic/systems/fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,332 copying build/lib/biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,335 copying build/lib/biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,338 copying build/lib/biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,340 copying build/lib/biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,342 copying build/lib/biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-05-30T20:35:10,345 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,346 copying build/lib/biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,349 copying build/lib/biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,350 copying build/lib/biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,353 copying build/lib/biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,355 copying build/lib/biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-05-30T20:35:10,357 copying build/lib/biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-05-30T20:35:10,360 copying build/lib/biorefineries/cellulosic/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,362 copying build/lib/biorefineries/cellulosic/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-05-30T20:35:10,365 creating build/bdist.linux-armv7l/wheel/biorefineries/tea 2025-05-30T20:35:10,367 copying build/lib/biorefineries/tea/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-05-30T20:35:10,369 copying build/lib/biorefineries/tea/cellulosic_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-05-30T20:35:10,372 copying build/lib/biorefineries/tea/conventional_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-05-30T20:35:10,375 creating build/bdist.linux-armv7l/wheel/biorefineries/milk 2025-05-30T20:35:10,376 copying build/lib/biorefineries/milk/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,379 copying build/lib/biorefineries/milk/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,381 copying build/lib/biorefineries/milk/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,383 copying build/lib/biorefineries/milk/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,386 copying build/lib/biorefineries/milk/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,388 copying build/lib/biorefineries/milk/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,390 copying build/lib/biorefineries/milk/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,393 copying build/lib/biorefineries/milk/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,395 copying build/lib/biorefineries/milk/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,398 copying build/lib/biorefineries/milk/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,401 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/images 2025-05-30T20:35:10,402 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,407 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,413 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,437 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,445 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,455 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-05-30T20:35:10,459 copying build/lib/biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,488 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/results 2025-05-30T20:35:10,489 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-05-30T20:35:10,491 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-05-30T20:35:10,494 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-05-30T20:35:10,496 copying build/lib/biorefineries/milk/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-05-30T20:35:10,500 creating build/bdist.linux-armv7l/wheel/biorefineries/cane 2025-05-30T20:35:10,501 copying build/lib/biorefineries/cane/uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,505 copying build/lib/biorefineries/cane/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,507 copying build/lib/biorefineries/cane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,509 copying build/lib/biorefineries/cane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,512 copying build/lib/biorefineries/cane/oil_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,514 copying build/lib/biorefineries/cane/feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,517 copying build/lib/biorefineries/cane/rename_soon.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,519 copying build/lib/biorefineries/cane/results.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,522 copying build/lib/biorefineries/cane/composition.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,524 copying build/lib/biorefineries/cane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,527 copying build/lib/biorefineries/cane/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,530 copying build/lib/biorefineries/cane/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,532 copying build/lib/biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,536 copying build/lib/biorefineries/cane/evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,539 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems 2025-05-30T20:35:10,541 copying build/lib/biorefineries/cane/systems/fermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,544 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,546 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,548 copying build/lib/biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,551 copying build/lib/biorefineries/cane/systems/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,553 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,555 copying build/lib/biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-05-30T20:35:10,558 copying build/lib/biorefineries/cane/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,560 copying build/lib/biorefineries/cane/systems/biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,563 copying build/lib/biorefineries/cane/systems/lipidcane.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,565 copying build/lib/biorefineries/cane/systems/biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,568 copying build/lib/biorefineries/cane/systems/juicing.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,571 copying build/lib/biorefineries/cane/systems/bagasse.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,573 copying build/lib/biorefineries/cane/systems/pretreatment.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,575 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,578 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,581 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/sugarcane 2025-05-30T20:35:10,582 copying build/lib/biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-05-30T20:35:10,584 copying build/lib/biorefineries/cane/systems/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-05-30T20:35:10,586 copying build/lib/biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-05-30T20:35:10,589 copying build/lib/biorefineries/cane/systems/sugarcane/ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-05-30T20:35:10,591 copying build/lib/biorefineries/cane/systems/lipid_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,593 copying build/lib/biorefineries/cane/systems/sugar.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-05-30T20:35:10,596 copying build/lib/biorefineries/cane/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,598 copying build/lib/biorefineries/cane/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,604 copying build/lib/biorefineries/cane/parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,606 copying build/lib/biorefineries/cane/contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-05-30T20:35:10,609 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/data 2025-05-30T20:35:10,611 copying build/lib/biorefineries/cane/data/price_distributions_2023.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,613 copying build/lib/biorefineries/cane/data/cane_composition_data_full.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,617 copying build/lib/biorefineries/cane/data/price_distributions_2022.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,621 copying build/lib/biorefineries/cane/data/lca_characterization_factors.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,624 copying build/lib/biorefineries/cane/data/RIN_prices_2023.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,631 copying build/lib/biorefineries/cane/data/RIN_prices_2022.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,640 copying build/lib/biorefineries/cane/data/cane_composition_data.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,643 copying build/lib/biorefineries/cane/data/microbial_oil_baseline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-05-30T20:35:10,646 creating build/bdist.linux-armv7l/wheel/biorefineries/ethanol 2025-05-30T20:35:10,647 copying build/lib/biorefineries/ethanol/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-05-30T20:35:10,650 copying build/lib/biorefineries/ethanol/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-05-30T20:35:10,652 copying build/lib/biorefineries/ethanol/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-05-30T20:35:10,654 creating build/bdist.linux-armv7l/wheel/biorefineries/sugarcane 2025-05-30T20:35:10,656 copying build/lib/biorefineries/sugarcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,658 copying build/lib/biorefineries/sugarcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,660 copying build/lib/biorefineries/sugarcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,662 copying build/lib/biorefineries/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,664 copying build/lib/biorefineries/sugarcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,666 copying build/lib/biorefineries/sugarcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,668 copying build/lib/biorefineries/sugarcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-05-30T20:35:10,671 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs 2025-05-30T20:35:10,672 copying build/lib/biorefineries/LAOs/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,674 copying build/lib/biorefineries/LAOs/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,676 copying build/lib/biorefineries/LAOs/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,678 copying build/lib/biorefineries/LAOs/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,680 copying build/lib/biorefineries/LAOs/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,682 copying build/lib/biorefineries/LAOs/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,686 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs/units 2025-05-30T20:35:10,687 copying build/lib/biorefineries/LAOs/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-05-30T20:35:10,690 copying build/lib/biorefineries/LAOs/units/surge_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-05-30T20:35:10,692 copying build/lib/biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-05-30T20:35:10,694 copying build/lib/biorefineries/LAOs/units/nitrogen_generation_package.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-05-30T20:35:10,696 copying build/lib/biorefineries/LAOs/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,698 copying build/lib/biorefineries/LAOs/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,700 copying build/lib/biorefineries/LAOs/analysis.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,759 copying build/lib/biorefineries/LAOs/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-05-30T20:35:10,761 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols 2025-05-30T20:35:10,762 copying build/lib/biorefineries/fattyalcohols/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,764 copying build/lib/biorefineries/fattyalcohols/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,766 copying build/lib/biorefineries/fattyalcohols/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,768 copying build/lib/biorefineries/fattyalcohols/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,770 copying build/lib/biorefineries/fattyalcohols/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,772 copying build/lib/biorefineries/fattyalcohols/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,774 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols/units 2025-05-30T20:35:10,775 copying build/lib/biorefineries/fattyalcohols/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-05-30T20:35:10,778 copying build/lib/biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-05-30T20:35:10,780 copying build/lib/biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-05-30T20:35:10,782 copying build/lib/biorefineries/fattyalcohols/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,784 copying build/lib/biorefineries/fattyalcohols/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,786 copying build/lib/biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,789 copying build/lib/biorefineries/fattyalcohols/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-05-30T20:35:10,792 creating build/bdist.linux-armv7l/wheel/biorefineries/cornstover 2025-05-30T20:35:10,793 copying build/lib/biorefineries/cornstover/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,796 copying build/lib/biorefineries/cornstover/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,798 copying build/lib/biorefineries/cornstover/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,800 copying build/lib/biorefineries/cornstover/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,801 copying build/lib/biorefineries/cornstover/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,804 copying build/lib/biorefineries/cornstover/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,806 copying build/lib/biorefineries/cornstover/_sankey.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,808 copying build/lib/biorefineries/cornstover/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,811 copying build/lib/biorefineries/cornstover/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,813 copying build/lib/biorefineries/cornstover/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,815 copying build/lib/biorefineries/cornstover/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,818 copying build/lib/biorefineries/cornstover/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,820 copying build/lib/biorefineries/cornstover/_plot_bars.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,822 copying build/lib/biorefineries/cornstover/_switchgrass.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,824 copying build/lib/biorefineries/cornstover/_plot_single_point.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,827 copying build/lib/biorefineries/cornstover/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,829 copying build/lib/biorefineries/cornstover/_legacy_code.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-05-30T20:35:10,832 creating build/bdist.linux-armv7l/wheel/biorefineries/acester 2025-05-30T20:35:10,833 copying build/lib/biorefineries/acester/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,836 copying build/lib/biorefineries/acester/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,839 copying build/lib/biorefineries/acester/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,841 copying build/lib/biorefineries/acester/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,843 copying build/lib/biorefineries/acester/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,846 copying build/lib/biorefineries/acester/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,848 copying build/lib/biorefineries/acester/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,850 copying build/lib/biorefineries/acester/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,853 copying build/lib/biorefineries/acester/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,855 copying build/lib/biorefineries/acester/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,857 copying build/lib/biorefineries/acester/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:10,859 creating build/bdist.linux-armv7l/wheel/biorefineries/acester/notebooks 2025-05-30T20:35:10,860 copying build/lib/biorefineries/acester/notebooks/arpa_e_project.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/notebooks 2025-05-30T20:35:10,864 creating build/bdist.linux-armv7l/wheel/biorefineries/acester/images 2025-05-30T20:35:10,865 copying build/lib/biorefineries/acester/images/sensitivity.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,870 copying build/lib/biorefineries/acester/images/configuration_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,881 copying build/lib/biorefineries/acester/images/spearman.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,888 copying build/lib/biorefineries/acester/images/preliminary_flowsheet_with_auxiliaries.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,891 copying build/lib/biorefineries/acester/images/monte_carlo_across_bioreactor_yield.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,894 copying build/lib/biorefineries/acester/images/preliminary_flowsheet.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,897 copying build/lib/biorefineries/acester/images/all fermentation-glucose growth_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,901 copying build/lib/biorefineries/acester/images/uncertainty.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,904 copying build/lib/biorefineries/acester/images/configuration_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,919 copying build/lib/biorefineries/acester/images/kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,928 copying build/lib/biorefineries/acester/images/oleochemical_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,952 copying build/lib/biorefineries/acester/images/dewatering_comparison_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,963 copying build/lib/biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,983 copying build/lib/biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,992 copying build/lib/biorefineries/acester/images/montecarlo_absolute.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:10,998 copying build/lib/biorefineries/acester/images/montecarlo_absolute.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,004 copying build/lib/biorefineries/acester/images/MSP_CI_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,008 copying build/lib/biorefineries/acester/images/preliminary_contour.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,011 copying build/lib/biorefineries/acester/images/sensitivity.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,014 copying build/lib/biorefineries/acester/images/AcEster_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,019 copying build/lib/biorefineries/acester/images/impact.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,023 copying build/lib/biorefineries/acester/images/oleochemical_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,027 copying build/lib/biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,036 copying build/lib/biorefineries/acester/images/all fermentation-glucose growth_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,044 copying build/lib/biorefineries/acester/images/AcOH_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,048 copying build/lib/biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,059 copying build/lib/biorefineries/acester/images/impact.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,064 copying build/lib/biorefineries/acester/images/H2_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,067 copying build/lib/biorefineries/acester/images/monte_carlo_across_bioreactor_yield.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,075 copying build/lib/biorefineries/acester/images/dewatering_comparison_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,084 copying build/lib/biorefineries/acester/images/spearman.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,087 copying build/lib/biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,092 copying build/lib/biorefineries/acester/images/kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,103 copying build/lib/biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,115 copying build/lib/biorefineries/acester/images/dewatering_comparison_no_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,125 copying build/lib/biorefineries/acester/images/dewatering_comparison_no_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,139 copying build/lib/biorefineries/acester/images/MSP_CI_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/images 2025-05-30T20:35:11,145 creating build/bdist.linux-armv7l/wheel/biorefineries/acester/results 2025-05-30T20:35:11,146 copying build/lib/biorefineries/acester/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,150 copying build/lib/biorefineries/acester/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,154 copying build/lib/biorefineries/acester/results/all fermentation-acetate growth_monte_carlo_across_bioreactor_yield.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,156 copying build/lib/biorefineries/acester/results/all fermentation-glucose growth_200 -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,159 copying build/lib/biorefineries/acester/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,162 copying build/lib/biorefineries/acester/results/all fermentation-glucose growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,164 copying build/lib/biorefineries/acester/results/all fermentation-acetate growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,167 copying build/lib/biorefineries/acester/results/all fermentation-acetate growth_200 -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,170 copying build/lib/biorefineries/acester/results/MSP_GWP_oleochemical_yield.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/acester/results 2025-05-30T20:35:11,172 copying build/lib/biorefineries/acester/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/acester 2025-05-30T20:35:11,175 creating build/bdist.linux-armv7l/wheel/biorefineries/lipidcane 2025-05-30T20:35:11,176 copying build/lib/biorefineries/lipidcane/_feedstock_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,179 copying build/lib/biorefineries/lipidcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,181 copying build/lib/biorefineries/lipidcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,183 copying build/lib/biorefineries/lipidcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,185 copying build/lib/biorefineries/lipidcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,187 copying build/lib/biorefineries/lipidcane/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,189 copying build/lib/biorefineries/lipidcane/_webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,192 copying build/lib/biorefineries/lipidcane/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,194 copying build/lib/biorefineries/lipidcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,243 copying build/lib/biorefineries/lipidcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,299 copying build/lib/biorefineries/lipidcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,301 copying build/lib/biorefineries/lipidcane/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,303 copying build/lib/biorefineries/lipidcane/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-05-30T20:35:11,305 running install_egg_info 2025-05-30T20:35:11,343 running egg_info 2025-05-30T20:35:11,370 writing biorefineries.egg-info/PKG-INFO 2025-05-30T20:35:11,373 writing dependency_links to biorefineries.egg-info/dependency_links.txt 2025-05-30T20:35:11,375 writing requirements to biorefineries.egg-info/requires.txt 2025-05-30T20:35:11,376 writing top-level names to biorefineries.egg-info/top_level.txt 2025-05-30T20:35:11,443 reading manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-05-30T20:35:11,462 adding license file 'LICENSE.txt' 2025-05-30T20:35:11,477 writing manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-05-30T20:35:11,479 Copying biorefineries.egg-info to build/bdist.linux-armv7l/wheel/./biorefineries-2.34.1-py3.11.egg-info 2025-05-30T20:35:11,490 running install_scripts 2025-05-30T20:35:11,502 creating build/bdist.linux-armv7l/wheel/biorefineries-2.34.1.dist-info/WHEEL 2025-05-30T20:35:11,504 creating '/tmp/pip-wheel-zlv7skn0/biorefineries-2.34.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T20:35:11,507 adding 'biorefineries/__init__.py' 2025-05-30T20:35:11,510 adding 'biorefineries/LAOs/README.rst' 2025-05-30T20:35:11,512 adding 'biorefineries/LAOs/__init__.py' 2025-05-30T20:35:11,513 adding 'biorefineries/LAOs/_chemicals.py' 2025-05-30T20:35:11,516 adding 'biorefineries/LAOs/_process_specifications.py' 2025-05-30T20:35:11,518 adding 'biorefineries/LAOs/_system.py' 2025-05-30T20:35:11,520 adding 'biorefineries/LAOs/_tea.py' 2025-05-30T20:35:11,951 adding 'biorefineries/LAOs/analysis.ipynb' 2025-05-30T20:35:11,974 adding 'biorefineries/LAOs/chemicals.yaml' 2025-05-30T20:35:11,975 adding 'biorefineries/LAOs/streams.yaml' 2025-05-30T20:35:11,976 adding 'biorefineries/LAOs/utils.py' 2025-05-30T20:35:11,978 adding 'biorefineries/LAOs/units/__init__.py' 2025-05-30T20:35:11,980 adding 'biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py' 2025-05-30T20:35:11,981 adding 'biorefineries/LAOs/units/nitrogen_generation_package.py' 2025-05-30T20:35:11,982 adding 'biorefineries/LAOs/units/surge_tank.py' 2025-05-30T20:35:11,984 adding 'biorefineries/abm/abm_yield_example.py' 2025-05-30T20:35:11,985 adding 'biorefineries/abm/breakdown.py' 2025-05-30T20:35:11,987 adding 'biorefineries/abm/corn.py' 2025-05-30T20:35:11,988 adding 'biorefineries/abm/cornstover.py' 2025-05-30T20:35:11,990 adding 'biorefineries/acester/README.md' 2025-05-30T20:35:11,991 adding 'biorefineries/acester/__init__.py' 2025-05-30T20:35:11,994 adding 'biorefineries/acester/biorefinery.py' 2025-05-30T20:35:11,995 adding 'biorefineries/acester/chemicals.py' 2025-05-30T20:35:11,996 adding 'biorefineries/acester/data.py' 2025-05-30T20:35:11,998 adding 'biorefineries/acester/plots.py' 2025-05-30T20:35:11,999 adding 'biorefineries/acester/process_settings.py' 2025-05-30T20:35:12,003 adding 'biorefineries/acester/systems.py' 2025-05-30T20:35:12,005 adding 'biorefineries/acester/tables.py' 2025-05-30T20:35:12,006 adding 'biorefineries/acester/tests.py' 2025-05-30T20:35:12,011 adding 'biorefineries/acester/uncertainty.py' 2025-05-30T20:35:12,013 adding 'biorefineries/acester/units.py' 2025-05-30T20:35:12,023 adding 'biorefineries/acester/images/AcEster_contours.svg' 2025-05-30T20:35:12,030 adding 'biorefineries/acester/images/AcOH_contours.svg' 2025-05-30T20:35:12,098 adding 'biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.png' 2025-05-30T20:35:12,110 adding 'biorefineries/acester/images/AcOH_titer_AcEster_yield_contours.svg' 2025-05-30T20:35:12,116 adding 'biorefineries/acester/images/H2_contours.svg' 2025-05-30T20:35:12,141 adding 'biorefineries/acester/images/MSP_CI_kde.png' 2025-05-30T20:35:12,149 adding 'biorefineries/acester/images/MSP_CI_kde.svg' 2025-05-30T20:35:12,180 adding 'biorefineries/acester/images/all fermentation-glucose growth_kde.png' 2025-05-30T20:35:12,188 adding 'biorefineries/acester/images/all fermentation-glucose growth_kde.svg' 2025-05-30T20:35:12,233 adding 'biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.png' 2025-05-30T20:35:12,255 adding 'biorefineries/acester/images/carbon_capture_comparison_dewatering_kde.svg' 2025-05-30T20:35:12,310 adding 'biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.png' 2025-05-30T20:35:12,333 adding 'biorefineries/acester/images/carbon_capture_comparison_no_dewatering_kde.svg' 2025-05-30T20:35:12,400 adding 'biorefineries/acester/images/configuration_kde.png' 2025-05-30T20:35:12,421 adding 'biorefineries/acester/images/configuration_kde.svg' 2025-05-30T20:35:12,475 adding 'biorefineries/acester/images/dewatering_comparison_cc_kde.png' 2025-05-30T20:35:12,498 adding 'biorefineries/acester/images/dewatering_comparison_cc_kde.svg' 2025-05-30T20:35:12,574 adding 'biorefineries/acester/images/dewatering_comparison_no_cc_kde.png' 2025-05-30T20:35:12,598 adding 'biorefineries/acester/images/dewatering_comparison_no_cc_kde.svg' 2025-05-30T20:35:12,607 adding 'biorefineries/acester/images/impact.png' 2025-05-30T20:35:12,615 adding 'biorefineries/acester/images/impact.svg' 2025-05-30T20:35:12,652 adding 'biorefineries/acester/images/kde.png' 2025-05-30T20:35:12,673 adding 'biorefineries/acester/images/kde.svg' 2025-05-30T20:35:12,716 adding 'biorefineries/acester/images/monte_carlo_across_bioreactor_yield.png' 2025-05-30T20:35:12,723 adding 'biorefineries/acester/images/monte_carlo_across_bioreactor_yield.svg' 2025-05-30T20:35:12,740 adding 'biorefineries/acester/images/montecarlo_absolute.png' 2025-05-30T20:35:12,758 adding 'biorefineries/acester/images/montecarlo_absolute.svg' 2025-05-30T20:35:12,852 adding 'biorefineries/acester/images/oleochemical_yield_contours.png' 2025-05-30T20:35:12,865 adding 'biorefineries/acester/images/oleochemical_yield_contours.svg' 2025-05-30T20:35:12,871 adding 'biorefineries/acester/images/preliminary_contour.png' 2025-05-30T20:35:12,873 adding 'biorefineries/acester/images/preliminary_flowsheet.svg' 2025-05-30T20:35:12,877 adding 'biorefineries/acester/images/preliminary_flowsheet_with_auxiliaries.svg' 2025-05-30T20:35:12,883 adding 'biorefineries/acester/images/sensitivity.png' 2025-05-30T20:35:12,892 adding 'biorefineries/acester/images/sensitivity.svg' 2025-05-30T20:35:12,914 adding 'biorefineries/acester/images/spearman.png' 2025-05-30T20:35:12,920 adding 'biorefineries/acester/images/spearman.svg' 2025-05-30T20:35:12,923 adding 'biorefineries/acester/images/uncertainty.png' 2025-05-30T20:35:12,926 adding 'biorefineries/acester/notebooks/arpa_e_project.py' 2025-05-30T20:35:12,927 adding 'biorefineries/acester/results/MSP_GWP_oleochemical_yield.npy' 2025-05-30T20:35:12,931 adding 'biorefineries/acester/results/all fermentation-acetate growth_200' 2025-05-30T20:35:12,938 adding 'biorefineries/acester/results/all fermentation-acetate growth_monte_carlo.xlsx' 2025-05-30T20:35:12,941 adding 'biorefineries/acester/results/all fermentation-acetate growth_monte_carlo_across_bioreactor_yield.xlsx' 2025-05-30T20:35:12,942 adding 'biorefineries/acester/results/all fermentation-acetate growth_spearman.xlsx' 2025-05-30T20:35:12,946 adding 'biorefineries/acester/results/all fermentation-glucose growth_200' 2025-05-30T20:35:12,954 adding 'biorefineries/acester/results/all fermentation-glucose growth_monte_carlo.xlsx' 2025-05-30T20:35:12,957 adding 'biorefineries/acester/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx' 2025-05-30T20:35:12,959 adding 'biorefineries/acester/results/all fermentation-glucose growth_spearman.xlsx' 2025-05-30T20:35:12,961 adding 'biorefineries/biodiesel/__init__.py' 2025-05-30T20:35:12,962 adding 'biorefineries/biodiesel/streams.py' 2025-05-30T20:35:12,965 adding 'biorefineries/biodiesel/systems.py' 2025-05-30T20:35:12,966 adding 'biorefineries/biodiesel/units/__init__.py' 2025-05-30T20:35:12,968 adding 'biorefineries/biodiesel/units/glycerolysis_reactor.py' 2025-05-30T20:35:12,969 adding 'biorefineries/biodiesel/units/skimming_tank.py' 2025-05-30T20:35:12,971 adding 'biorefineries/biodiesel/units/transesterification.py' 2025-05-30T20:35:12,973 adding 'biorefineries/cane/README.md' 2025-05-30T20:35:12,975 adding 'biorefineries/cane/__init__.py' 2025-05-30T20:35:12,985 adding 'biorefineries/cane/biorefinery.py' 2025-05-30T20:35:12,988 adding 'biorefineries/cane/chemicals.py' 2025-05-30T20:35:12,991 adding 'biorefineries/cane/composition.py' 2025-05-30T20:35:12,998 adding 'biorefineries/cane/configurations_biomass_yield_analysis.npy' 2025-05-30T20:35:13,003 adding 'biorefineries/cane/contour_plots.py' 2025-05-30T20:35:13,007 adding 'biorefineries/cane/evaluation.py' 2025-05-30T20:35:13,009 adding 'biorefineries/cane/feature_mockups.py' 2025-05-30T20:35:13,011 adding 'biorefineries/cane/oil_extraction.py' 2025-05-30T20:35:13,012 adding 'biorefineries/cane/parse_configuration.py' 2025-05-30T20:35:13,013 adding 'biorefineries/cane/process_settings.py' 2025-05-30T20:35:13,014 adding 'biorefineries/cane/rename_soon.py' 2025-05-30T20:35:13,016 adding 'biorefineries/cane/results.py' 2025-05-30T20:35:13,018 adding 'biorefineries/cane/streams.py' 2025-05-30T20:35:13,019 adding 'biorefineries/cane/tables.py' 2025-05-30T20:35:13,027 adding 'biorefineries/cane/uncertainty_plots.py' 2025-05-30T20:35:13,029 adding 'biorefineries/cane/units.py' 2025-05-30T20:35:13,058 adding 'biorefineries/cane/data/RIN_prices_2022.csv' 2025-05-30T20:35:13,077 adding 'biorefineries/cane/data/RIN_prices_2023.csv' 2025-05-30T20:35:13,080 adding 'biorefineries/cane/data/cane_composition_data.xlsx' 2025-05-30T20:35:13,082 adding 'biorefineries/cane/data/cane_composition_data_full.xlsx' 2025-05-30T20:35:13,083 adding 'biorefineries/cane/data/lca_characterization_factors.py' 2025-05-30T20:35:13,085 adding 'biorefineries/cane/data/microbial_oil_baseline.py' 2025-05-30T20:35:13,086 adding 'biorefineries/cane/data/price_distributions_2022.py' 2025-05-30T20:35:13,088 adding 'biorefineries/cane/data/price_distributions_2023.py' 2025-05-30T20:35:13,090 adding 'biorefineries/cane/systems/__init__.py' 2025-05-30T20:35:13,092 adding 'biorefineries/cane/systems/bagasse.py' 2025-05-30T20:35:13,093 adding 'biorefineries/cane/systems/biodiesel.py' 2025-05-30T20:35:13,095 adding 'biorefineries/cane/systems/biodiesel_actag.py' 2025-05-30T20:35:13,096 adding 'biorefineries/cane/systems/cellulosic_biodiesel.py' 2025-05-30T20:35:13,098 adding 'biorefineries/cane/systems/cellulosic_biodiesel_actag.py' 2025-05-30T20:35:13,101 adding 'biorefineries/cane/systems/fermentation.py' 2025-05-30T20:35:13,102 adding 'biorefineries/cane/systems/juicing.py' 2025-05-30T20:35:13,104 adding 'biorefineries/cane/systems/lipid_extraction.py' 2025-05-30T20:35:13,106 adding 'biorefineries/cane/systems/lipidcane.py' 2025-05-30T20:35:13,107 adding 'biorefineries/cane/systems/pretreatment.py' 2025-05-30T20:35:13,109 adding 'biorefineries/cane/systems/sugar.py' 2025-05-30T20:35:13,110 adding 'biorefineries/cane/systems/oilcane/__init__.py' 2025-05-30T20:35:13,112 adding 'biorefineries/cane/systems/oilcane/biodiesel_ethanol.py' 2025-05-30T20:35:13,114 adding 'biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py' 2025-05-30T20:35:13,115 adding 'biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py' 2025-05-30T20:35:13,117 adding 'biorefineries/cane/systems/oilcane/crude_oil_ethanol.py' 2025-05-30T20:35:13,118 adding 'biorefineries/cane/systems/sugarcane/__init__.py' 2025-05-30T20:35:13,120 adding 'biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py' 2025-05-30T20:35:13,121 adding 'biorefineries/cane/systems/sugarcane/ethanol.py' 2025-05-30T20:35:13,123 adding 'biorefineries/cane/systems/sugarcane/sugar_ethanol.py' 2025-05-30T20:35:13,125 adding 'biorefineries/cellulosic/__init__.py' 2025-05-30T20:35:13,126 adding 'biorefineries/cellulosic/biorefinery.py' 2025-05-30T20:35:13,128 adding 'biorefineries/cellulosic/chemicals.py' 2025-05-30T20:35:13,130 adding 'biorefineries/cellulosic/process_settings.py' 2025-05-30T20:35:13,131 adding 'biorefineries/cellulosic/streams.py' 2025-05-30T20:35:13,135 adding 'biorefineries/cellulosic/units.py' 2025-05-30T20:35:13,137 adding 'biorefineries/cellulosic/systems/__init__.py' 2025-05-30T20:35:13,139 adding 'biorefineries/cellulosic/systems/cellulosic_ethanol.py' 2025-05-30T20:35:13,141 adding 'biorefineries/cellulosic/systems/fermentation/__init__.py' 2025-05-30T20:35:13,142 adding 'biorefineries/cellulosic/systems/fermentation/cofermentation.py' 2025-05-30T20:35:13,145 adding 'biorefineries/cellulosic/systems/fermentation/general_interface.py' 2025-05-30T20:35:13,147 adding 'biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py' 2025-05-30T20:35:13,148 adding 'biorefineries/cellulosic/systems/fermentation/saccharification.py' 2025-05-30T20:35:13,150 adding 'biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py' 2025-05-30T20:35:13,152 adding 'biorefineries/cellulosic/systems/pretreatment/__init__.py' 2025-05-30T20:35:13,153 adding 'biorefineries/cellulosic/systems/pretreatment/alkaline.py' 2025-05-30T20:35:13,155 adding 'biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py' 2025-05-30T20:35:13,156 adding 'biorefineries/cellulosic/systems/pretreatment/dilute_acid.py' 2025-05-30T20:35:13,157 adding 'biorefineries/cellulosic/systems/pretreatment/hot_water.py' 2025-05-30T20:35:13,160 adding 'biorefineries/corn/README.md' 2025-05-30T20:35:13,161 adding 'biorefineries/corn/__init__.py' 2025-05-30T20:35:13,162 adding 'biorefineries/corn/biorefinery.py' 2025-05-30T20:35:13,164 adding 'biorefineries/corn/chemicals.py' 2025-05-30T20:35:13,165 adding 'biorefineries/corn/process_settings.py' 2025-05-30T20:35:13,168 adding 'biorefineries/corn/systems.py' 2025-05-30T20:35:13,169 adding 'biorefineries/corn/tea.py' 2025-05-30T20:35:13,171 adding 'biorefineries/corn/units.py' 2025-05-30T20:35:13,173 adding 'biorefineries/corn/utils.py' 2025-05-30T20:35:13,175 adding 'biorefineries/cornstover/README.rst' 2025-05-30T20:35:13,177 adding 'biorefineries/cornstover/__init__.py' 2025-05-30T20:35:13,178 adding 'biorefineries/cornstover/_analysis.py' 2025-05-30T20:35:13,179 adding 'biorefineries/cornstover/_chemicals.py' 2025-05-30T20:35:13,181 adding 'biorefineries/cornstover/_legacy_code.py' 2025-05-30T20:35:13,182 adding 'biorefineries/cornstover/_plot_bars.py' 2025-05-30T20:35:13,184 adding 'biorefineries/cornstover/_plot_single_point.py' 2025-05-30T20:35:13,185 adding 'biorefineries/cornstover/_plot_spearman.py' 2025-05-30T20:35:13,187 adding 'biorefineries/cornstover/_plot_uncertainty.py' 2025-05-30T20:35:13,189 adding 'biorefineries/cornstover/_process_settings.py' 2025-05-30T20:35:13,190 adding 'biorefineries/cornstover/_sankey.py' 2025-05-30T20:35:13,191 adding 'biorefineries/cornstover/_switchgrass.py' 2025-05-30T20:35:13,193 adding 'biorefineries/cornstover/_tea.py' 2025-05-30T20:35:13,194 adding 'biorefineries/cornstover/model.py' 2025-05-30T20:35:13,195 adding 'biorefineries/cornstover/systems.py' 2025-05-30T20:35:13,196 adding 'biorefineries/cornstover/units.py' 2025-05-30T20:35:13,198 adding 'biorefineries/cornstover/webapp_model.py' 2025-05-30T20:35:13,200 adding 'biorefineries/ethanol/__init__.py' 2025-05-30T20:35:13,201 adding 'biorefineries/ethanol/streams.py' 2025-05-30T20:35:13,203 adding 'biorefineries/ethanol/systems.py' 2025-05-30T20:35:13,205 adding 'biorefineries/fattyalcohols/README.rst' 2025-05-30T20:35:13,206 adding 'biorefineries/fattyalcohols/__init__.py' 2025-05-30T20:35:13,208 adding 'biorefineries/fattyalcohols/_chemicals.py' 2025-05-30T20:35:13,209 adding 'biorefineries/fattyalcohols/_fattyalcohol_production.py' 2025-05-30T20:35:13,211 adding 'biorefineries/fattyalcohols/_process_specifications.py' 2025-05-30T20:35:13,212 adding 'biorefineries/fattyalcohols/_system.py' 2025-05-30T20:35:13,213 adding 'biorefineries/fattyalcohols/_tea.py' 2025-05-30T20:35:13,215 adding 'biorefineries/fattyalcohols/chemicals.yaml' 2025-05-30T20:35:13,216 adding 'biorefineries/fattyalcohols/streams.yaml' 2025-05-30T20:35:13,217 adding 'biorefineries/fattyalcohols/utils.py' 2025-05-30T20:35:13,219 adding 'biorefineries/fattyalcohols/units/__init__.py' 2025-05-30T20:35:13,221 adding 'biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py' 2025-05-30T20:35:13,222 adding 'biorefineries/fattyalcohols/units/slle_centrifuge.py' 2025-05-30T20:35:13,225 adding 'biorefineries/lactic/README.rst' 2025-05-30T20:35:13,227 adding 'biorefineries/lactic/__init__.py' 2025-05-30T20:35:13,230 adding 'biorefineries/lactic/_chemicals.py' 2025-05-30T20:35:13,232 adding 'biorefineries/lactic/_process_settings.py' 2025-05-30T20:35:13,237 adding 'biorefineries/lactic/_processes.py' 2025-05-30T20:35:13,238 adding 'biorefineries/lactic/_profile.py' 2025-05-30T20:35:13,240 adding 'biorefineries/lactic/_tea.py' 2025-05-30T20:35:13,247 adding 'biorefineries/lactic/_units.py' 2025-05-30T20:35:13,250 adding 'biorefineries/lactic/models.py' 2025-05-30T20:35:13,252 adding 'biorefineries/lactic/systems.py' 2025-05-30T20:35:13,254 adding 'biorefineries/lactic/utils.py' 2025-05-30T20:35:13,256 adding 'biorefineries/lactic/analyses/1_uncertainties.py' 2025-05-30T20:35:13,258 adding 'biorefineries/lactic/analyses/2_fermentation_TRY.py' 2025-05-30T20:35:13,259 adding 'biorefineries/lactic/analyses/3_feedstock_carb-price.py' 2025-05-30T20:35:13,261 adding 'biorefineries/lipidcane/README.rst' 2025-05-30T20:35:13,263 adding 'biorefineries/lipidcane/__init__.py' 2025-05-30T20:35:13,264 adding 'biorefineries/lipidcane/_analysis.py' 2025-05-30T20:35:13,265 adding 'biorefineries/lipidcane/_chemicals.py' 2025-05-30T20:35:13,267 adding 'biorefineries/lipidcane/_feedstock_analysis.py' 2025-05-30T20:35:13,268 adding 'biorefineries/lipidcane/_plot_spearman.py' 2025-05-30T20:35:13,270 adding 'biorefineries/lipidcane/_plot_uncertainty.py' 2025-05-30T20:35:13,271 adding 'biorefineries/lipidcane/_process_settings.py' 2025-05-30T20:35:13,273 adding 'biorefineries/lipidcane/_system.py' 2025-05-30T20:35:13,274 adding 'biorefineries/lipidcane/_tea.py' 2025-05-30T20:35:13,275 adding 'biorefineries/lipidcane/_webapp_model.py' 2025-05-30T20:35:13,277 adding 'biorefineries/lipidcane/model.py' 2025-05-30T20:35:13,711 adding 'biorefineries/lipidcane/sankey_plot.ipynb' 2025-05-30T20:35:13,911 adding 'biorefineries/milk/GalactoOligoSaccharideProcess.xlsx' 2025-05-30T20:35:13,922 adding 'biorefineries/milk/README.md' 2025-05-30T20:35:13,923 adding 'biorefineries/milk/__init__.py' 2025-05-30T20:35:13,925 adding 'biorefineries/milk/biorefinery.py' 2025-05-30T20:35:13,927 adding 'biorefineries/milk/chemicals.py' 2025-05-30T20:35:13,928 adding 'biorefineries/milk/data.py' 2025-05-30T20:35:13,929 adding 'biorefineries/milk/plots.py' 2025-05-30T20:35:13,931 adding 'biorefineries/milk/process_settings.py' 2025-05-30T20:35:13,932 adding 'biorefineries/milk/systems.py' 2025-05-30T20:35:13,934 adding 'biorefineries/milk/tests.py' 2025-05-30T20:35:13,937 adding 'biorefineries/milk/uncertainty.py' 2025-05-30T20:35:13,938 adding 'biorefineries/milk/units.py' 2025-05-30T20:35:13,986 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png' 2025-05-30T20:35:13,995 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg' 2025-05-30T20:35:14,041 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png' 2025-05-30T20:35:14,050 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg' 2025-05-30T20:35:14,118 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png' 2025-05-30T20:35:14,129 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg' 2025-05-30T20:35:14,132 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy' 2025-05-30T20:35:14,134 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy' 2025-05-30T20:35:14,136 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy' 2025-05-30T20:35:14,138 adding 'biorefineries/oilcane/README.md' 2025-05-30T20:35:14,140 adding 'biorefineries/oilcane/__init__.py' 2025-05-30T20:35:14,141 adding 'biorefineries/oilcane/_chemicals.py' 2025-05-30T20:35:14,143 adding 'biorefineries/oilcane/_contour_plots.py' 2025-05-30T20:35:14,145 adding 'biorefineries/oilcane/_evaluation.py' 2025-05-30T20:35:14,146 adding 'biorefineries/oilcane/_feature_mockups.py' 2025-05-30T20:35:14,148 adding 'biorefineries/oilcane/_line_plots.py' 2025-05-30T20:35:14,150 adding 'biorefineries/oilcane/_load_data.py' 2025-05-30T20:35:14,152 adding 'biorefineries/oilcane/_parse_configuration.py' 2025-05-30T20:35:14,153 adding 'biorefineries/oilcane/_tables.py' 2025-05-30T20:35:14,154 adding 'biorefineries/oilcane/_tea.py' 2025-05-30T20:35:14,161 adding 'biorefineries/oilcane/_uncertainty_plots.py' 2025-05-30T20:35:14,162 adding 'biorefineries/oilcane/lca_benchmarks.py' 2025-05-30T20:35:14,618 adding 'biorefineries/oilcane/sankey_energy.ipynb' 2025-05-30T20:35:14,646 adding 'biorefineries/oilcane/sankey_plot.ipynb' 2025-05-30T20:35:14,648 adding 'biorefineries/oilcane/systems.py' 2025-05-30T20:35:14,649 adding 'biorefineries/oilcane/units.py' 2025-05-30T20:35:14,651 adding 'biorefineries/oilcane/utils.py' 2025-05-30T20:35:14,652 adding 'biorefineries/oilcane/webapp_model.py' 2025-05-30T20:35:14,654 adding 'biorefineries/sugarcane/README.rst' 2025-05-30T20:35:14,655 adding 'biorefineries/sugarcane/__init__.py' 2025-05-30T20:35:14,656 adding 'biorefineries/sugarcane/_chemicals.py' 2025-05-30T20:35:14,658 adding 'biorefineries/sugarcane/_process_settings.py' 2025-05-30T20:35:14,659 adding 'biorefineries/sugarcane/_tea.py' 2025-05-30T20:35:14,660 adding 'biorefineries/sugarcane/model.py' 2025-05-30T20:35:14,661 adding 'biorefineries/sugarcane/systems.py' 2025-05-30T20:35:14,663 adding 'biorefineries/tea/__init__.py' 2025-05-30T20:35:14,665 adding 'biorefineries/tea/cellulosic_ethanol_tea.py' 2025-05-30T20:35:14,666 adding 'biorefineries/tea/conventional_ethanol_tea.py' 2025-05-30T20:35:14,668 adding 'biorefineries/tests/__init__.py' 2025-05-30T20:35:14,670 adding 'biorefineries/tests/run_readmes.py' 2025-05-30T20:35:14,672 adding 'biorefineries/tests/test_biorefineries.py' 2025-05-30T20:35:14,675 adding 'biorefineries-2.34.1.dist-info/licenses/LICENSE.txt' 2025-05-30T20:35:14,676 adding 'biorefineries-2.34.1.dist-info/METADATA' 2025-05-30T20:35:14,678 adding 'biorefineries-2.34.1.dist-info/WHEEL' 2025-05-30T20:35:14,679 adding 'biorefineries-2.34.1.dist-info/top_level.txt' 2025-05-30T20:35:14,684 adding 'biorefineries-2.34.1.dist-info/RECORD' 2025-05-30T20:35:14,811 removing build/bdist.linux-armv7l/wheel 2025-05-30T20:35:15,018 Building wheel for biorefineries (setup.py): finished with status 'done' 2025-05-30T20:35:15,128 Created wheel for biorefineries: filename=biorefineries-2.34.1-py3-none-any.whl size=11031192 sha256=3900a202d5116f093844a9296876416de204b75d70c27179bf60de291641f945 2025-05-30T20:35:15,130 Stored in directory: /tmp/pip-ephem-wheel-cache-_36ty5oi/wheels/c9/55/06/e4d382589bed753c91a9800889ead37955ed98faf7e3253b26 2025-05-30T20:35:15,153 Successfully built biorefineries 2025-05-30T20:35:15,535 Removed build tracker: '/tmp/pip-build-tracker-9oorqpw6'