2025-05-31T02:10:12,387 Created temporary directory: /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:12,388 Initialized build tracking at /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:12,388 Created build tracker: /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:12,389 Entered build tracker: /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:12,390 Created temporary directory: /tmp/pip-wheel-cwswuoth
2025-05-31T02:10:12,394 Created temporary directory: /tmp/pip-ephem-wheel-cache-6jeoxu4p
2025-05-31T02:10:12,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-05-31T02:10:12,445 2 location(s) to search for versions of resolwe-bio:
2025-05-31T02:10:12,445 * https://pypi.org/simple/resolwe-bio/
2025-05-31T02:10:12,445 * https://www.piwheels.org/simple/resolwe-bio/
2025-05-31T02:10:12,446 Fetching project page and analyzing links: https://pypi.org/simple/resolwe-bio/
2025-05-31T02:10:12,446 Getting page https://pypi.org/simple/resolwe-bio/
2025-05-31T02:10:12,448 Found index url https://pypi.org/simple/
2025-05-31T02:10:13,058 Fetched page https://pypi.org/simple/resolwe-bio/ as application/vnd.pypi.simple.v1+json
2025-05-31T02:10:13,151   Link requires a different Python (3.11.2 not in: '>=3.6, <3.11'): https://files.pythonhosted.org/packages/ad/95/a4793259054276ae7dda756167f01c007f7581b92e1c5f8fa3cda29d042e/resolwe-bio-0.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-05-31T02:10:13,152   Skipping link: 0.0.0 Requires-Python >=3.6,<3.11: https://files.pythonhosted.org/packages/ad/95/a4793259054276ae7dda756167f01c007f7581b92e1c5f8fa3cda29d042e/resolwe-bio-0.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-05-31T02:10:13,152   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/95/de/73c1035653e8c125c76be9545eedbf3a41418b7638700ed9886d67d9fafc/resolwe_bio-0.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-05-31T02:10:13,153   Found link https://files.pythonhosted.org/packages/b0/ae/1d6c2547f092bd996ee679b1533cce7cae3854eef9b7eb1b9332149f200a/resolwe-bio-1.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.0.0
2025-05-31T02:10:13,154   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/48/47/7a55fae40c66badbab7908c2e11d70adf6ba0611fe7b3bd608ebc0916a3a/resolwe_bio-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,155   Found link https://files.pythonhosted.org/packages/b7/48/4bb863f4ce66ca2672cce010bcaee96aafdb49c6e1e0053674a127f0b7b0/resolwe-bio-1.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.1.0
2025-05-31T02:10:13,155   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ed/f3/52b7868be10affa941d9991adf257142af1aa2790f2a29943bcfd637d441/resolwe_bio-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,156   Found link https://files.pythonhosted.org/packages/50/a4/a42ea25308515a97c788eb20fd90dc8c3e5957f0452d108da6867d7362be/resolwe-bio-1.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.2.0
2025-05-31T02:10:13,157   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/5c/78/be7031bc2af69322be03d07fa9f5e94a2d57466ca78d8ff6581b6727af7a/resolwe_bio-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,157   Found link https://files.pythonhosted.org/packages/c1/e8/0aa7b6d353e1a3d5a826d642b7d0cee29e81a0457ddd554c68afcc986ca0/resolwe-bio-1.2.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.2.1
2025-05-31T02:10:13,158   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/c1/f1/5681372bc6b3619201a8deb043902c701e1aaa572b2c241dd0f619d44eae/resolwe_bio-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,159   Found link https://files.pythonhosted.org/packages/6f/a8/ae64d668e83ddd1a193d75eeaf81c74a522484694e44b1a38ae86cf2d967/resolwe-bio-1.3.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.3.0
2025-05-31T02:10:13,159   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/9f/23/d547ddc184580ed53f3950c8bde84e88add48be1bf600d5f78a7db7cc2eb/resolwe_bio-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,160   Found link https://files.pythonhosted.org/packages/b3/a8/89b51a28bbc228c725b73484686f6e653855e2b6b7e461ca4a29e70b9295/resolwe-bio-1.4.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.4.0
2025-05-31T02:10:13,161   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/c7/aa/04e5b5463fdedb8ee8c95f4963ed30c314e3e9d3dbc0595d190ae7ddcd01/resolwe_bio-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,161   Found link https://files.pythonhosted.org/packages/3b/53/51e75ea37cdfd1d3fb6c512c25b4fc71023ee61b2e9f2a993e090fc6b755/resolwe-bio-1.4.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.4.1
2025-05-31T02:10:13,162   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ed/9c/1115261096cbd33d9edf52285b32150063b2e2dee35e46248fb704e8458c/resolwe_bio-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,163   Found link https://files.pythonhosted.org/packages/2c/54/06690b448f2baa5265e313a6b35d2f665c11fac89123b76a9140b0e107ee/resolwe-bio-2.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 2.0.0
2025-05-31T02:10:13,163   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/33/34/b0bc185bd85359e9250b48b836e6729fba8e0cf04a47f42ad4d4492cc766/resolwe_bio-2.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,164   Found link https://files.pythonhosted.org/packages/31/fd/d22b978b5dbb4a2941faac926484dcfb1180b9b97df07b6da5f6b07b0ec3/resolwe-bio-3.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.0.0
2025-05-31T02:10:13,165   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/1c/d2/17c98dcea7fa0d74843b4b3512e1c9273e356a99add2e87a2bc9c125cd3e/resolwe_bio-3.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,165   Found link https://files.pythonhosted.org/packages/13/e7/bfb8a11ccca36c345dc16d0f988ed4674fe2d2ffc0cb3119597008fd42ed/resolwe-bio-3.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.1.0
2025-05-31T02:10:13,166   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/e9/0c/f89721568b37e1cd5ab852e39891bb83ded44162446c30f334c2b302d44a/resolwe_bio-3.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,166   Found link https://files.pythonhosted.org/packages/5b/51/5f2086186bdc6e79f18c5f119c87cbfc5b1aba99b8f97dacc54da3268b3f/resolwe-bio-3.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.2.0
2025-05-31T02:10:13,167   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/f4/97/d4be02a40a526adf9ff61af2b00507bd0d7d25d1240878577c9d9c1ed8cd/resolwe_bio-3.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,168   Found link https://files.pythonhosted.org/packages/52/7a/3f9a6abee4e2745e3113553d499ba218f2267506e09274c10a42e04c06ee/resolwe-bio-4.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.0.0
2025-05-31T02:10:13,168   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/15/09/9e12acdaa52bef8848fba33474605c18ada1e4f2d817e21a9103b57e7988/resolwe_bio-4.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,169   Found link https://files.pythonhosted.org/packages/e6/57/ef94623e6f7301888ba42c73008d6318f098945d7a47b55dce17620e6a42/resolwe-bio-4.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.1.0a1
2025-05-31T02:10:13,170   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/f4/db/dc3edbf625ba604805fcf3930b676765df79e55be923ce9c6500037f29e3/resolwe_bio-4.1.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,170   Found link https://files.pythonhosted.org/packages/20/7b/352af47c1fd629de7198397d76533164f57615334aa99529a8a313797f05/resolwe-bio-4.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.1.0
2025-05-31T02:10:13,171   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/5e/a6/d67d02c4ead593ec0533fbe8f70974fc8481133431d42a20601918ea5b39/resolwe_bio-4.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,171   Found link https://files.pythonhosted.org/packages/1f/2c/34f8c5ed059c36874fa4632756e7709a1b63d5aff53662cd60a825486a3f/resolwe-bio-4.2.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.2.0a1
2025-05-31T02:10:13,172   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/62/6d/36d8c15472c5b3d3042a4fb3c6931c19ab43999d41212e6e8639bde7de6d/resolwe_bio-4.2.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,173   Found link https://files.pythonhosted.org/packages/71/b9/5a86bdbb715d8e82f8a9d92b85cdb857cbe57215181fd69fabaca9935f44/resolwe-bio-4.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.2.0
2025-05-31T02:10:13,173   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/d7/64/5a3a2b8c1ab91141a9ad79fbcdc5e240b0316098c8fd9681b534db211e91/resolwe_bio-4.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,174   Found link https://files.pythonhosted.org/packages/9c/65/bb2b788e8076e80d21ed99a9b0b913e02a3945f16ef2eab5ec41523200a8/resolwe-bio-5.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 5.0.0
2025-05-31T02:10:13,175   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/78/db/42757947fdc6af159bff593a866a5bda46fe6e055a0230ec8caee7fdb75a/resolwe_bio-5.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,175   Found link https://files.pythonhosted.org/packages/08/ab/b7c589a13d48f0396703c14af9473a7143324e01c0b7711f0a16fc8cc0c0/resolwe-bio-5.0.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 5.0.1
2025-05-31T02:10:13,176   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/b9/82/3b51311b69e96717b91f731f8eb0549ec496ba1a1ca397f8092f4abd981b/resolwe_bio-5.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-05-31T02:10:13,177   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/f8/1c/0529423eba8c0148e57bad9cc420c318277fea638dafa36d153e3c889ff2/resolwe-bio-5.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,178   Skipping link: 5.1.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/f8/1c/0529423eba8c0148e57bad9cc420c318277fea638dafa36d153e3c889ff2/resolwe-bio-5.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,179   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/42/ef/607e6612de99c7aedf4abd4d11250aa3e410c9c7afc261e1342f0625b013/resolwe_bio-5.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,180   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/e5/e9/c7355a1c4cf6fec14135867686798030ef886b0603afaf90ea04a303d016/resolwe-bio-5.1.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,181   Skipping link: 5.1.0a2 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/e5/e9/c7355a1c4cf6fec14135867686798030ef886b0603afaf90ea04a303d016/resolwe-bio-5.1.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,181   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/1c/38/6fc26a0cbac16f39794aa79ee783cb77aff06d94ed05e953828e039ce8d2/resolwe_bio-5.1.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,182   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/b5/5d/4ebdd5f42878c251c99c00a082a5387f9d5e5afe50a04db53c9f91179a6a/resolwe-bio-6.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,183   Skipping link: 6.0.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/b5/5d/4ebdd5f42878c251c99c00a082a5387f9d5e5afe50a04db53c9f91179a6a/resolwe-bio-6.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,184   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/be/4f/b8fb275321692faf4720c92684cda1cb034e284cdfdb26204bf06f6ff9ff/resolwe_bio-6.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,184   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/1c/20/41ffca19f33c9fc245591aa48a25479333419d42c147a65fb9d0dbc4e41e/resolwe-bio-6.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,185   Skipping link: 6.0.0 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/1c/20/41ffca19f33c9fc245591aa48a25479333419d42c147a65fb9d0dbc4e41e/resolwe-bio-6.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,186   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/68/a3/25ff3567850cf97b95142fe1cef005c25410aed3a14921b5c8337dd8a610/resolwe_bio-6.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,186   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/65/c7/259bd54854d1750aa008278f8b02c8f700d30b518cb2d394dc6113c38af9/resolwe-bio-6.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,187   Skipping link: 6.1.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/65/c7/259bd54854d1750aa008278f8b02c8f700d30b518cb2d394dc6113c38af9/resolwe-bio-6.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,188   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/65/d2d1c811087c543c453f6acb23c04e79af346d7258b93f9051ce91c5fb57/resolwe_bio-6.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,189   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/cb/e4/60a917b4b9fb6208188256447f7c60c1e0c40413758da13f2c1cbd645b95/resolwe-bio-6.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,189   Skipping link: 6.1.0 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/cb/e4/60a917b4b9fb6208188256447f7c60c1e0c40413758da13f2c1cbd645b95/resolwe-bio-6.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-05-31T02:10:13,190   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/a9/cc/64a3d8c8558028dea8f8bf76893ff110560f621a40baf190ddfa3364224c/resolwe_bio-6.1.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
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2025-05-31T02:10:13,952   Found link https://files.pythonhosted.org/packages/30/93/2f5f51bc1aaa9ecaf5a0164267028557f0f0b0e795e28214c45d257f6030/resolwe_bio-62.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a2
2025-05-31T02:10:13,953   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/25/99/9d4b134da109df98d207417a363be80c582b58d6203c8e59813322fd3b96/resolwe_bio-62.0.0a3-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,954   Found link https://files.pythonhosted.org/packages/05/d2/ff95da6adac0fb8215df416630e6fa4a6420e4ed5fa52400fb8921f82944/resolwe_bio-62.0.0a3.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a3
2025-05-31T02:10:13,954   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/d4/a1/d9f532295b0522234038e0c8c71d7cb2331706917659378588fc7a3086c7/resolwe_bio-62.0.0a4-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,955   Found link https://files.pythonhosted.org/packages/b3/be/014846ca1f2ff8b38e974fcf3b9abd51f2a1b6a5745f70223e29de9b929b/resolwe_bio-62.0.0a4.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a4
2025-05-31T02:10:13,956   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/20/fd/cf9cb65f4bc61770476509aed97431449750b2dd612e59ea040b73fc8567/resolwe_bio-62.0.0a5-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,956   Found link https://files.pythonhosted.org/packages/20/8d/dbab6219600c0d99e7d109d90d586386426aadea2b1a80411acdb11d5c9f/resolwe_bio-62.0.0a5.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a5
2025-05-31T02:10:13,957   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/01/95/c046a0588fc0732159765d94cf4343cb09e80dd3954936eb7bb7e0a2135f/resolwe_bio-62.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,958   Found link https://files.pythonhosted.org/packages/b7/84/9a9129f7e840b70773f21fc383269dd692964df6e3ff53c64665c2517219/resolwe_bio-62.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0
2025-05-31T02:10:13,959   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/95/81/e0ea3bcddb4143469be8919233f31d7d1b42419a80c5fb0681ecbf76656a/resolwe_bio-63.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,960   Found link https://files.pythonhosted.org/packages/5a/1c/4252c35fb574d69751c265398fbe5c06595de3ba7b4ff5387dfba077e1ec/resolwe_bio-63.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a1
2025-05-31T02:10:13,960   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/23/16/68df8e3b0398c48025f0ae0cf2faf3385991d2f31cda23dede4126250c0c/resolwe_bio-63.0.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,961   Found link https://files.pythonhosted.org/packages/2a/74/db93a3e19fbd7697a26dc3568b252145deab8d96b612b948bd98ba8f862b/resolwe_bio-63.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a2
2025-05-31T02:10:13,961   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/90/74/358b242a5b5b9252323aaf0e5faa60ecce4ccdb1c027837f8265805245a9/resolwe_bio-63.0.0a3-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,962   Found link https://files.pythonhosted.org/packages/55/2a/6a84262d7814bc438b8e1d9480a6d47648f91ce93b6a128dce78cddb2c5b/resolwe_bio-63.0.0a3.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a3
2025-05-31T02:10:13,963   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/d9/861d98266e4485bbe0e9ee394f47c7730d635fad3ed95d213f1e4f025ea8/resolwe_bio-63.0.0a4-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,964   Found link https://files.pythonhosted.org/packages/ae/65/a6cd7cf59bed472e2158e29d6ec117596a6918d9bca868c8a56cedb6a723/resolwe_bio-63.0.0a4.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a4
2025-05-31T02:10:13,964   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/39/20/c1cda0b1d0d18e4025f1ea6802d10b47a63ff9a07fed5c4d2260fc7fd8e3/resolwe_bio-63.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,965   Found link https://files.pythonhosted.org/packages/44/3a/7c34839513f4be3119b07926c7a73f6e15f26b1e447a92d3117893de7501/resolwe_bio-63.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0
2025-05-31T02:10:13,966   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ef/63/ffa662707e75621eae721f1bea7c61ecc34313e77eb67595d0d69e9bc2d0/resolwe_bio-63.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,967   Found link https://files.pythonhosted.org/packages/ae/0d/63a44697b75290b0c646dec6ca5cd2e1158b36a31808ca59cc8ac5c5bfcc/resolwe_bio-63.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.1.0a1
2025-05-31T02:10:13,967   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ee/08/633e78b20c63f93832418c9dd53d3f0d5b5555156fa2a7eeff568ae98968/resolwe_bio-63.1.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,968   Found link https://files.pythonhosted.org/packages/47/df/fb819ecf23f3486dd71d65a795c6e7abc22ea8d4886f8f28771cf20f8b59/resolwe_bio-63.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.1.0
2025-05-31T02:10:13,969   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/86/4e/88fc47d757b9ee3d393a005793f069158ebfacf8970aaf161ea478f10020/resolwe_bio-64.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,970   Found link https://files.pythonhosted.org/packages/f5/44/47228e8e0aeee840997458a756d030cfd5b811bbce93ea04887f30309080/resolwe_bio-64.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0a1
2025-05-31T02:10:13,970   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/f6/257d3de72abdffad4cb34679a97f435eb8cc3a02cf2cadc0386832ad9dfd/resolwe_bio-64.0.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,971   Found link https://files.pythonhosted.org/packages/7a/dd/e2d4f70e50dc8b82844410885a1b02977871049e2ae71081d57bf0538f11/resolwe_bio-64.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0a2
2025-05-31T02:10:13,971   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/32/5d/4e97745dc216366e0a7b05deb9afa3e6c4cdefd7766bc62e2a959db3bdd4/resolwe_bio-64.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-05-31T02:10:13,972   Found link https://files.pythonhosted.org/packages/61/25/2a3042b45c8b8236cd4e1e41c7c5dc9684833f10a1b8b7b39eeff787ea0e/resolwe_bio-64.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0
2025-05-31T02:10:13,973 Fetching project page and analyzing links: https://www.piwheels.org/simple/resolwe-bio/
2025-05-31T02:10:13,974 Getting page https://www.piwheels.org/simple/resolwe-bio/
2025-05-31T02:10:13,975 Found index url https://www.piwheels.org/simple/
2025-05-31T02:10:14,133 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-05-31T02:10:14,792 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-05-31T02:10:15,958 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-05-31T02:10:18,131 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-05-31T02:10:22,298 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-05-31T02:10:22,465 Could not fetch URL https://www.piwheels.org/simple/resolwe-bio/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/resolwe-bio/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-05-31T02:10:22,467 Skipping link: not a file: https://www.piwheels.org/simple/resolwe-bio/
2025-05-31T02:10:22,468 Skipping link: not a file: https://pypi.org/simple/resolwe-bio/
2025-05-31T02:10:22,503 Given no hashes to check 1 links for project 'resolwe-bio': discarding no candidates
2025-05-31T02:10:22,505 Collecting resolwe-bio==63.1.0a1
2025-05-31T02:10:22,507   Created temporary directory: /tmp/pip-unpack-10wwv9le
2025-05-31T02:10:22,845   Downloading resolwe_bio-63.1.0a1.tar.gz (22.5 MB)
2025-05-31T02:10:29,849   Added resolwe-bio==63.1.0a1 from https://files.pythonhosted.org/packages/ae/0d/63a44697b75290b0c646dec6ca5cd2e1158b36a31808ca59cc8ac5c5bfcc/resolwe_bio-63.1.0a1.tar.gz to build tracker '/tmp/pip-build-tracker-a2oj18tm'
2025-05-31T02:10:29,854   Created temporary directory: /tmp/pip-build-env-e1gsnjc2
2025-05-31T02:10:29,859   Installing build dependencies: started
2025-05-31T02:10:29,861   Running command pip subprocess to install build dependencies
2025-05-31T02:10:30,988   Using pip 25.2 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2025-05-31T02:10:30,989   Non-user install by explicit request
2025-05-31T02:10:31,436   Created build tracker: /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:31,437   Entered build tracker: /tmp/pip-build-tracker-a2oj18tm
2025-05-31T02:10:31,440   Created temporary directory: /tmp/pip-install-n6boxig5
2025-05-31T02:10:31,444   Created temporary directory: /tmp/pip-ephem-wheel-cache-ofh54yke
2025-05-31T02:10:31,493   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-05-31T02:10:31,495   2 location(s) to search for versions of setuptools:
2025-05-31T02:10:31,496   * https://pypi.org/simple/setuptools/
2025-05-31T02:10:31,496   * https://www.piwheels.org/simple/setuptools/
2025-05-31T02:10:31,497   Fetching project page and analyzing links: https://pypi.org/simple/setuptools/
2025-05-31T02:10:31,498   Getting page https://pypi.org/simple/setuptools/
2025-05-31T02:10:31,499   Found index url https://pypi.org/simple/
2025-05-31T02:10:31,502   Looking up "https://pypi.org/simple/setuptools/" in the cache
2025-05-31T02:10:31,502   Request header has "max_age" as 0, cache bypassed
2025-05-31T02:10:31,507   Starting new HTTPS connection (1): pypi.org:443
2025-05-31T02:10:31,657   https://pypi.org:443 "GET /simple/setuptools/ HTTP/1.1" 304 0
2025-05-31T02:10:31,678   Fetched page https://pypi.org/simple/setuptools/ as application/vnd.pypi.simple.v1+json
2025-05-31T02:10:31,834     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/77/38/90cae8fd99c5dc402d25930e1c91f5fcf6de5c8e982fd152a5a061e3df56/setuptools-0.6b1-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,835     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1f/ab/1ed6131b5112d1d47cb89e1cbea08f783f0ed49d6fc795ed2ff63f84d20c/setuptools-0.6b1-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,836     Found link https://files.pythonhosted.org/packages/82/cb/906d051fdf1c8b7703d288d3cc44ff32746090378f7f8539c8476a21ce9a/setuptools-0.6b1.zip (from https://pypi.org/simple/setuptools/), version: 0.6b1
2025-05-31T02:10:31,837     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/61/52/c84d22f3669ea8d4e54126f6241d7ed9828e3a382596f170043dfdaddbcc/setuptools-0.6b2-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,838     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9b/87/48c155a10c4561fe9b8a83dcf9361ddb9cc9ab5c3ed1b504ac12ab11ed6a/setuptools-0.6b2-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,839     Found link https://files.pythonhosted.org/packages/0e/3b/53daeaf6623a2bab3d3c40b19a35ff5bd7c4e1fbad2f537a61c1fe8c5069/setuptools-0.6b2.zip (from https://pypi.org/simple/setuptools/), version: 0.6b2
2025-05-31T02:10:31,840     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c3/13/a3129905c118a7004e4bbc6db2c24d73de9e15960fd749a61e16fb114f30/setuptools-0.6b3-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,841     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/10/b3/7166e400d3b953fa4714f97806f077a3f7791cd48ea71df708814234283a/setuptools-0.6b3-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,841     Found link https://files.pythonhosted.org/packages/ff/33/635de67bf3010651ba8db9d8064721274bfb6fbb778a110089f34beabaf2/setuptools-0.6b3.zip (from https://pypi.org/simple/setuptools/), version: 0.6b3
2025-05-31T02:10:31,842     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1c/d7/6927233caddaa4f466a8b957c94be00810e751edb2655283c04fc3b680f2/setuptools-0.6b4-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,843     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b3/79/8c94b6c99192df5f5d900ce17405cb5cfcdab8643d2e4aaf6ce1ee948576/setuptools-0.6b4-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,844     Found link https://files.pythonhosted.org/packages/82/be/b2e51157a4debc4ebcab179aeb839948a0f02ce06cbc7749c8ab866c0aa9/setuptools-0.6b4.zip (from https://pypi.org/simple/setuptools/), version: 0.6b4
2025-05-31T02:10:31,845     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/54/f7/6f443db0df0a1706d8af3a8fa7d18528e5557f588cbddce7f7b47ff08ba5/setuptools-0.6c1-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,846     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/59/61/1ab6a87cec11ffb403280338aacc2c7a1e44eff0d7e431076fba1e61895e/setuptools-0.6c1-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,847     Found link https://files.pythonhosted.org/packages/4e/2d/555dc3106b42c977a2f7c7e6f28e5b3104c9bd9306005d304d2ddc1c6587/setuptools-0.6c1.zip (from https://pypi.org/simple/setuptools/), version: 0.6c1
2025-05-31T02:10:31,847     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/24/01/51f2d3ede491f51990b99ab0bfc5bad473c9b45fcf9b1c7b8c7bc3ff0e14/setuptools-0.6c2-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-05-31T02:10:31,848     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/c4/cb2718f8851517aba754c4f25d79f2a65430d4a4979375d78ea51f217123/setuptools-0.6c2-py2.4.egg (from https://pypi.org/simple/setuptools/)
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2025-05-31T02:10:51,828     Found link https://files.pythonhosted.org/packages/a1/d4/1fc4078c65507b51b96ca8f8c3ba19e6a61c8253c72794544580a7b6c24d/packaging-25.0.tar.gz (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 25.0
2025-05-31T02:10:51,829   Fetching project page and analyzing links: https://www.piwheels.org/simple/packaging/
2025-05-31T02:10:51,829   Getting page https://www.piwheels.org/simple/packaging/
2025-05-31T02:10:51,831   Found index url https://www.piwheels.org/simple/
2025-05-31T02:10:51,832   Looking up "https://www.piwheels.org/simple/packaging/" in the cache
2025-05-31T02:10:51,833   Request header has "max_age" as 0, cache bypassed
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2025-05-31T02:10:51,991   Incremented Retry for (url='/simple/packaging/'): Retry(total=4, connect=None, read=None, redirect=None, status=None)
2025-05-31T02:10:51,992   WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-05-31T02:10:51,993   Starting new HTTPS connection (14): www.piwheels.org:443
2025-05-31T02:10:52,157   Incremented Retry for (url='/simple/packaging/'): Retry(total=3, connect=None, read=None, redirect=None, status=None)
2025-05-31T02:10:52,659   WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-05-31T02:10:52,661   Starting new HTTPS connection (15): www.piwheels.org:443
2025-05-31T02:10:52,833   Incremented Retry for (url='/simple/packaging/'): Retry(total=2, connect=None, read=None, redirect=None, status=None)
2025-05-31T02:10:53,835   WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-05-31T02:10:53,837   Starting new HTTPS connection (16): www.piwheels.org:443
2025-05-31T02:10:54,009   Incremented Retry for (url='/simple/packaging/'): Retry(total=1, connect=None, read=None, redirect=None, status=None)
2025-05-31T02:10:56,011   WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-05-31T02:10:56,012   Starting new HTTPS connection (17): www.piwheels.org:443
2025-05-31T02:10:56,193   Incremented Retry for (url='/simple/packaging/'): Retry(total=0, connect=None, read=None, redirect=None, status=None)
2025-05-31T02:11:00,195   WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-05-31T02:11:00,197   Starting new HTTPS connection (18): www.piwheels.org:443
2025-05-31T02:11:00,383   Could not fetch URL https://www.piwheels.org/simple/packaging/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/packaging/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-05-31T02:11:00,384   Skipping link: not a file: https://www.piwheels.org/simple/packaging/
2025-05-31T02:11:00,385   Skipping link: not a file: https://pypi.org/simple/packaging/
2025-05-31T02:11:00,397   Given no hashes to check 44 links for project 'packaging': discarding no candidates
2025-05-31T02:11:00,406   Collecting packaging>=20 (from setuptools_scm~=8.1.0)
2025-05-31T02:11:00,407     Obtaining dependency information for packaging>=20 from https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl.metadata
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2025-05-31T02:11:00,410     Looking up "https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl.metadata" in the cache
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2025-05-31T02:11:00,416     The response is "fresh", returning cached response
2025-05-31T02:11:00,416     365000000 > 0
2025-05-31T02:11:00,418     Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
2025-05-31T02:11:00,421     Created temporary directory: /tmp/pip-metadata-a7rkoxth
2025-05-31T02:11:00,432   Created temporary directory: /tmp/pip-unpack-m2acrkxh
2025-05-31T02:11:00,434   Looking up "https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl" in the cache
2025-05-31T02:11:00,436   No cache entry available
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2025-05-31T02:11:00,444   Downloading setuptools-75.7.0-py3-none-any.whl (1.2 MB)
2025-05-31T02:11:00,532   Ignoring unknown cache-control directive: immutable
2025-05-31T02:11:00,532   Updating cache with response from "https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl"
2025-05-31T02:11:00,533   etag object cached for 1209600 seconds
2025-05-31T02:11:00,534   Caching due to etag
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2025-05-31T02:11:00,658   Downloading link https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.9) to /tmp/pip-unpack-m2acrkxh/setuptools-75.7.0-py3-none-any.whl
2025-05-31T02:11:00,661   Looking up "https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl" in the cache
2025-05-31T02:11:00,662   No cache entry available
2025-05-31T02:11:00,663   No cache entry available
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2025-05-31T02:11:00,672   Downloading setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
2025-05-31T02:11:00,679   Ignoring unknown cache-control directive: immutable
2025-05-31T02:11:00,680   Updating cache with response from "https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl"
2025-05-31T02:11:00,681   etag object cached for 1209600 seconds
2025-05-31T02:11:00,681   Caching due to etag
2025-05-31T02:11:00,690   Downloading link https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl (from https://pypi.org/simple/setuptools-scm/) (requires-python:>=3.8) to /tmp/pip-unpack-m2acrkxh/setuptools_scm-8.1.0-py3-none-any.whl
2025-05-31T02:11:00,693   Looking up "https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl" in the cache
2025-05-31T02:11:00,697   Current age based on date: 0
2025-05-31T02:11:00,699   Ignoring unknown cache-control directive: immutable
2025-05-31T02:11:00,700   Freshness lifetime from max-age: 365000000
2025-05-31T02:11:00,701   The response is "fresh", returning cached response
2025-05-31T02:11:00,702   365000000 > 0
2025-05-31T02:11:00,704   Using cached packaging-25.0-py3-none-any.whl (66 kB)
2025-05-31T02:11:00,708   Downloading link https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=3.8) to /tmp/pip-unpack-m2acrkxh/packaging-25.0-py3-none-any.whl
2025-05-31T02:11:01,383   Installing collected packages: setuptools, packaging, setuptools_scm

2025-05-31T02:11:02,343   Successfully installed packaging-25.0 setuptools-75.7.0 setuptools_scm-8.1.0
2025-05-31T02:11:02,344   Removed build tracker: '/tmp/pip-build-tracker-a2oj18tm'
2025-05-31T02:11:02,570   Installing build dependencies: finished with status 'done'
2025-05-31T02:11:02,573   Getting requirements to build wheel: started
2025-05-31T02:11:02,574   Running command Getting requirements to build wheel
2025-05-31T02:11:04,871   running egg_info
2025-05-31T02:11:04,881   writing resolwe_bio.egg-info/PKG-INFO
2025-05-31T02:11:04,895   writing dependency_links to resolwe_bio.egg-info/dependency_links.txt
2025-05-31T02:11:04,903   writing requirements to resolwe_bio.egg-info/requires.txt
2025-05-31T02:11:04,905   writing top-level names to resolwe_bio.egg-info/top_level.txt
2025-05-31T02:11:05,267   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-05-31T02:11:05,274   reading manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:05,390   reading manifest template 'MANIFEST.in'
2025-05-31T02:11:05,416   warning: no files found matching '.pylintrc'
2025-05-31T02:11:05,417   warning: no files found matching 'tests/docker-compose.yml'
2025-05-31T02:11:05,434   warning: no files found matching '*.yml' under directory 'tests'
2025-05-31T02:11:06,198   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-05-31T02:11:06,199   adding license file 'LICENSE'
2025-05-31T02:11:06,258   writing manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:06,381   Getting requirements to build wheel: finished with status 'done'
2025-05-31T02:11:06,385   Created temporary directory: /tmp/pip-modern-metadata-lw4zuedc
2025-05-31T02:11:06,387   Preparing metadata (pyproject.toml): started
2025-05-31T02:11:06,388   Running command Preparing metadata (pyproject.toml)
2025-05-31T02:11:07,331   running dist_info
2025-05-31T02:11:07,347   creating /tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info
2025-05-31T02:11:07,348   writing /tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/PKG-INFO
2025-05-31T02:11:07,364   writing dependency_links to /tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/dependency_links.txt
2025-05-31T02:11:07,372   writing requirements to /tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/requires.txt
2025-05-31T02:11:07,374   writing top-level names to /tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/top_level.txt
2025-05-31T02:11:07,375   writing manifest file '/tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:07,656   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-05-31T02:11:07,660   reading manifest file '/tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:07,662   reading manifest template 'MANIFEST.in'
2025-05-31T02:11:07,690   warning: no files found matching '.pylintrc'
2025-05-31T02:11:07,691   warning: no files found matching 'tests/docker-compose.yml'
2025-05-31T02:11:07,708   warning: no files found matching '*.yml' under directory 'tests'
2025-05-31T02:11:08,533   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-05-31T02:11:08,534   adding license file 'LICENSE'
2025-05-31T02:11:08,575   writing manifest file '/tmp/pip-modern-metadata-lw4zuedc/resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:08,578   creating '/tmp/pip-modern-metadata-lw4zuedc/resolwe_bio-63.1.0a1.dist-info'
2025-05-31T02:11:08,719   Preparing metadata (pyproject.toml): finished with status 'done'
2025-05-31T02:11:08,724   Source in /tmp/pip-wheel-cwswuoth/resolwe-bio_f03cc9ca0e5f481498abac2652e0c5a3 has version 63.1.0a1, which satisfies requirement resolwe-bio==63.1.0a1 from https://files.pythonhosted.org/packages/ae/0d/63a44697b75290b0c646dec6ca5cd2e1158b36a31808ca59cc8ac5c5bfcc/resolwe_bio-63.1.0a1.tar.gz
2025-05-31T02:11:08,726   Removed resolwe-bio==63.1.0a1 from https://files.pythonhosted.org/packages/ae/0d/63a44697b75290b0c646dec6ca5cd2e1158b36a31808ca59cc8ac5c5bfcc/resolwe_bio-63.1.0a1.tar.gz from build tracker '/tmp/pip-build-tracker-a2oj18tm'
2025-05-31T02:11:08,743 Created temporary directory: /tmp/pip-unpack-dmtvbb62
2025-05-31T02:11:08,744 Created temporary directory: /tmp/pip-unpack-9ibcui33
2025-05-31T02:11:08,745 Building wheels for collected packages: resolwe-bio
2025-05-31T02:11:08,749   Created temporary directory: /tmp/pip-wheel-56o30adl
2025-05-31T02:11:08,749   Destination directory: /tmp/pip-wheel-56o30adl
2025-05-31T02:11:08,751   Building wheel for resolwe-bio (pyproject.toml): started
2025-05-31T02:11:08,753   Running command Building wheel for resolwe-bio (pyproject.toml)
2025-05-31T02:11:09,723   running bdist_wheel
2025-05-31T02:11:09,751   running build
2025-05-31T02:11:09,752   running build_py
2025-05-31T02:11:09,763   creating build/lib/resolwe_bio
2025-05-31T02:11:09,765   copying resolwe_bio/__init__.py -> build/lib/resolwe_bio
2025-05-31T02:11:09,767   copying resolwe_bio/filters.py -> build/lib/resolwe_bio
2025-05-31T02:11:09,770   copying resolwe_bio/apps.py -> build/lib/resolwe_bio
2025-05-31T02:11:09,772   copying resolwe_bio/models.py -> build/lib/resolwe_bio
2025-05-31T02:11:09,773   copying resolwe_bio/extensions.py -> build/lib/resolwe_bio
2025-05-31T02:11:09,776   creating build/lib/resolwe_bio/tests
2025-05-31T02:11:09,777   copying resolwe_bio/tests/__init__.py -> build/lib/resolwe_bio/tests
2025-05-31T02:11:09,779   creating build/lib/resolwe_bio/kb
2025-05-31T02:11:09,780   copying resolwe_bio/kb/__init__.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,782   copying resolwe_bio/kb/backends.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,784   copying resolwe_bio/kb/filters.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,786   copying resolwe_bio/kb/views.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,788   copying resolwe_bio/kb/apps.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,790   copying resolwe_bio/kb/listener_plugin.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,793   copying resolwe_bio/kb/pagination.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,795   copying resolwe_bio/kb/models.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,797   copying resolwe_bio/kb/admin.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,799   copying resolwe_bio/kb/serializers.py -> build/lib/resolwe_bio/kb
2025-05-31T02:11:09,802   creating build/lib/resolwe_bio/tools
2025-05-31T02:11:09,803   copying resolwe_bio/tools/parse_diffexp.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,806   copying resolwe_bio/tools/parse_cuffnorm.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,808   copying resolwe_bio/tools/postprocess_snpeff.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,810   copying resolwe_bio/tools/cufflinks_sample_groups.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,813   copying resolwe_bio/tools/expressionmerge_archive.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,815   copying resolwe_bio/tools/bamliquidator_table.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,817   copying resolwe_bio/tools/mergebowtie2stats.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,820   copying resolwe_bio/tools/mappability.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,822   copying resolwe_bio/tools/plot_enhancers.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,825   copying resolwe_bio/tools/novel_splice_junctions.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,827   copying resolwe_bio/tools/mergebowtie2stats_paired.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,829   copying resolwe_bio/tools/utils.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,831   copying resolwe_bio/tools/parse_encoding_type.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,834   copying resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,836   copying resolwe_bio/tools/expression2storage.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,838   copying resolwe_bio/tools/gff3_to_gtf.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,840   copying resolwe_bio/tools/cuffnorm_group_labels.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,842   copying resolwe_bio/tools/merge_chipqc_archive.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,844   copying resolwe_bio/tools/convert_DE_excel_table.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,846   copying resolwe_bio/tools/parse_library_type.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,848   copying resolwe_bio/tools/mergebowtiestats.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,850   copying resolwe_bio/tools/expressionmerge.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,852   copying resolwe_bio/tools/validate_fastq.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,855   copying resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,857   copying resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,859   copying resolwe_bio/tools/unique_sample_names.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,861   copying resolwe_bio/tools/create_gene_sets.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,864   copying resolwe_bio/tools/xexpression.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,866   copying resolwe_bio/tools/spikeins_report.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,868   copying resolwe_bio/tools/star_sj_to_bed12.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,871   copying resolwe_bio/tools/spikein_pairwise.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,873   copying resolwe_bio/tools/make_igv_session_archive.py -> build/lib/resolwe_bio/tools
2025-05-31T02:11:09,876   creating build/lib/resolwe_bio/expression_filters
2025-05-31T02:11:09,878   copying resolwe_bio/expression_filters/__init__.py -> build/lib/resolwe_bio/expression_filters
2025-05-31T02:11:09,880   copying resolwe_bio/expression_filters/sample.py -> build/lib/resolwe_bio/expression_filters
2025-05-31T02:11:09,882   copying resolwe_bio/expression_filters/relation.py -> build/lib/resolwe_bio/expression_filters
2025-05-31T02:11:09,885   creating build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,886   copying resolwe_bio/migrations/0003_sample_indices.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,888   copying resolwe_bio/migrations/__init__.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,890   copying resolwe_bio/migrations/0002_metadata_table_type.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,892   copying resolwe_bio/migrations/0006_update_sql_methods.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,894   copying resolwe_bio/migrations/0004_merge_fastq_type.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,896   copying resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,899   copying resolwe_bio/migrations/0005_remove_descriptor_indices.py -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:09,901   creating build/lib/resolwe_bio/utils
2025-05-31T02:11:09,902   copying resolwe_bio/utils/test.py -> build/lib/resolwe_bio/utils
2025-05-31T02:11:09,905   copying resolwe_bio/utils/__init__.py -> build/lib/resolwe_bio/utils
2025-05-31T02:11:09,907   copying resolwe_bio/utils/filter.py -> build/lib/resolwe_bio/utils
2025-05-31T02:11:09,910   creating build/lib/resolwe_bio/process
2025-05-31T02:11:09,912   copying resolwe_bio/process/__init__.py -> build/lib/resolwe_bio/process
2025-05-31T02:11:09,914   copying resolwe_bio/process/runtime.py -> build/lib/resolwe_bio/process
2025-05-31T02:11:09,916   copying resolwe_bio/process/models.py -> build/lib/resolwe_bio/process
2025-05-31T02:11:09,920   creating build/lib/resolwe_bio/variants
2025-05-31T02:11:09,922   copying resolwe_bio/variants/__init__.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,924   copying resolwe_bio/variants/filters.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,926   copying resolwe_bio/variants/views.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,929   copying resolwe_bio/variants/apps.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,931   copying resolwe_bio/variants/listener_plugin.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,933   copying resolwe_bio/variants/models.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,936   copying resolwe_bio/variants/serializers.py -> build/lib/resolwe_bio/variants
2025-05-31T02:11:09,940   creating build/lib/resolwe_bio/tests/unit
2025-05-31T02:11:09,941   copying resolwe_bio/tests/unit/__init__.py -> build/lib/resolwe_bio/tests/unit
2025-05-31T02:11:09,943   copying resolwe_bio/tests/unit/test_tools.py -> build/lib/resolwe_bio/tests/unit
2025-05-31T02:11:09,945   copying resolwe_bio/tests/unit/test_expression_filters.py -> build/lib/resolwe_bio/tests/unit
2025-05-31T02:11:09,948   copying resolwe_bio/tests/unit/test_api.py -> build/lib/resolwe_bio/tests/unit
2025-05-31T02:11:09,951   creating build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,952   copying resolwe_bio/tests/workflows/test_atac_seq.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,954   copying resolwe_bio/tests/workflows/test_geo_import.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,956   copying resolwe_bio/tests/workflows/test_rna_seq.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,961   copying resolwe_bio/tests/workflows/__init__.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,963   copying resolwe_bio/tests/workflows/test_mirna.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,965   copying resolwe_bio/tests/workflows/test_fusion_calling_arriba.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,968   copying resolwe_bio/tests/workflows/test_cut_and_run.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,970   copying resolwe_bio/tests/workflows/test_chemut.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,972   copying resolwe_bio/tests/workflows/test_wes.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,975   copying resolwe_bio/tests/workflows/test_wgbs.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,977   copying resolwe_bio/tests/workflows/test_wgs.py -> build/lib/resolwe_bio/tests/workflows
2025-05-31T02:11:09,981   creating build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,982   copying resolwe_bio/tests/processes/test_plots.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,985   copying resolwe_bio/tests/processes/test_enrichment.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,988   copying resolwe_bio/tests/processes/__init__.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,990   copying resolwe_bio/tests/processes/test_expression_aggregator.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,992   copying resolwe_bio/tests/processes/test_support_processors.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,996   copying resolwe_bio/tests/processes/test_variant_calling.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:09,999   copying resolwe_bio/tests/processes/test_upload.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,002   copying resolwe_bio/tests/processes/test_diff_expression.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,005   copying resolwe_bio/tests/processes/test_reads_filtering.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,008   copying resolwe_bio/tests/processes/test_import.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,011   copying resolwe_bio/tests/processes/test_microarray.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,014   copying resolwe_bio/tests/processes/test_junctions.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,017   copying resolwe_bio/tests/processes/test_processor.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,019   copying resolwe_bio/tests/processes/test_annotation.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,021   copying resolwe_bio/tests/processes/test_alignment.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,025   copying resolwe_bio/tests/processes/test_ml_ready.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,027   copying resolwe_bio/tests/processes/test_expression.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,030   copying resolwe_bio/tests/processes/test_clustering.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,035   copying resolwe_bio/tests/processes/test_arriba.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,037   copying resolwe_bio/tests/processes/test_files_to_reads.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,039   copying resolwe_bio/tests/processes/test_metadata_upload.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,042   copying resolwe_bio/tests/processes/test_chipseq.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,045   copying resolwe_bio/tests/processes/test_pca.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,047   copying resolwe_bio/tests/processes/test_wgbs.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,050   copying resolwe_bio/tests/processes/test_wgs.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,053   copying resolwe_bio/tests/processes/test_samtools.py -> build/lib/resolwe_bio/tests/processes
2025-05-31T02:11:10,123   creating build/lib/resolwe_bio/kb/tests
2025-05-31T02:11:10,124   copying resolwe_bio/kb/tests/__init__.py -> build/lib/resolwe_bio/kb/tests
2025-05-31T02:11:10,126   copying resolwe_bio/kb/tests/test_feature.py -> build/lib/resolwe_bio/kb/tests
2025-05-31T02:11:10,129   copying resolwe_bio/kb/tests/test_import_kb.py -> build/lib/resolwe_bio/kb/tests
2025-05-31T02:11:10,131   copying resolwe_bio/kb/tests/test_mapping.py -> build/lib/resolwe_bio/kb/tests
2025-05-31T02:11:10,134   creating build/lib/resolwe_bio/kb/management
2025-05-31T02:11:10,135   copying resolwe_bio/kb/management/__init__.py -> build/lib/resolwe_bio/kb/management
2025-05-31T02:11:10,138   creating build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,139   copying resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,142   copying resolwe_bio/kb/migrations/__init__.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,144   copying resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,146   copying resolwe_bio/kb/migrations/0009_full_text_search.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,148   copying resolwe_bio/kb/migrations/0005_species.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,150   copying resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,153   copying resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,155   copying resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,157   copying resolwe_bio/kb/migrations/0014_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,159   copying resolwe_bio/kb/migrations/0001_initial.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,161   copying resolwe_bio/kb/migrations/0003_add_map_index.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,163   copying resolwe_bio/kb/migrations/0013_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,166   copying resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,168   copying resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,170   copying resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,172   copying resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:10,175   creating build/lib/resolwe_bio/kb/management/commands
2025-05-31T02:11:10,176   copying resolwe_bio/kb/management/commands/__init__.py -> build/lib/resolwe_bio/kb/management/commands
2025-05-31T02:11:10,178   copying resolwe_bio/kb/management/commands/insert_mappings.py -> build/lib/resolwe_bio/kb/management/commands
2025-05-31T02:11:10,181   copying resolwe_bio/kb/management/commands/utils.py -> build/lib/resolwe_bio/kb/management/commands
2025-05-31T02:11:10,182   copying resolwe_bio/kb/management/commands/insert_features.py -> build/lib/resolwe_bio/kb/management/commands
2025-05-31T02:11:10,186   creating build/lib/resolwe_bio/processes/differential_expression
2025-05-31T02:11:10,187   copying resolwe_bio/processes/differential_expression/edgeR.py -> build/lib/resolwe_bio/processes/differential_expression
2025-05-31T02:11:10,190   copying resolwe_bio/processes/differential_expression/deseq.py -> build/lib/resolwe_bio/processes/differential_expression
2025-05-31T02:11:10,193   copying resolwe_bio/processes/differential_expression/cuffdiff.py -> build/lib/resolwe_bio/processes/differential_expression
2025-05-31T02:11:10,196   creating build/lib/resolwe_bio/processes/go_enrichment
2025-05-31T02:11:10,197   copying resolwe_bio/processes/go_enrichment/go.py -> build/lib/resolwe_bio/processes/go_enrichment
2025-05-31T02:11:10,200   creating build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:10,201   copying resolwe_bio/processes/expression/expression_aggregator.py -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:10,204   copying resolwe_bio/processes/expression/star_quantification.py -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:10,209   copying resolwe_bio/processes/expression/featureCounts.py -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:10,212   copying resolwe_bio/processes/expression/salmon.py -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:10,215   creating build/lib/resolwe_bio/processes/fusion_calling
2025-05-31T02:11:10,216   copying resolwe_bio/processes/fusion_calling/arriba.py -> build/lib/resolwe_bio/processes/fusion_calling
2025-05-31T02:11:10,220   creating build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,221   copying resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,224   copying resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,227   copying resolwe_bio/processes/reads_processing/bamclipper.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,229   copying resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,232   copying resolwe_bio/processes/reads_processing/split_ncigar.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,234   copying resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,237   copying resolwe_bio/processes/reads_processing/markduplicates.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,240   copying resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,242   copying resolwe_bio/processes/reads_processing/trimgalore.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,246   copying resolwe_bio/processes/reads_processing/bbduk.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,249   copying resolwe_bio/processes/reads_processing/bqsr.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,252   copying resolwe_bio/processes/reads_processing/xengsort.py -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:10,255   creating build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:10,257   copying resolwe_bio/processes/chip_seq/macs2.py -> build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:10,261   copying resolwe_bio/processes/chip_seq/chipqc.py -> build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:10,264   copying resolwe_bio/processes/chip_seq/rose2.py -> build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:10,268   creating build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,269   copying resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,271   copying resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,274   copying resolwe_bio/processes/variant_calling/vc_chemut.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,277   copying resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,280   copying resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,282   copying resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,285   copying resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,287   copying resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,290   copying resolwe_bio/processes/variant_calling/snpeff.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,293   copying resolwe_bio/processes/variant_calling/gatk4.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,295   copying resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,297   copying resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,300   copying resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,303   copying resolwe_bio/processes/variant_calling/variants_to_table.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,306   copying resolwe_bio/processes/variant_calling/vqsr.py -> build/lib/resolwe_bio/processes/variant_calling
2025-05-31T02:11:10,309   creating build/lib/resolwe_bio/processes/clustering
2025-05-31T02:11:10,311   copying resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/lib/resolwe_bio/processes/clustering
2025-05-31T02:11:10,314   copying resolwe_bio/processes/clustering/pca.py -> build/lib/resolwe_bio/processes/clustering
2025-05-31T02:11:10,317   copying resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/lib/resolwe_bio/processes/clustering
2025-05-31T02:11:10,320   copying resolwe_bio/processes/clustering/find_similar.py -> build/lib/resolwe_bio/processes/clustering
2025-05-31T02:11:10,323   creating build/lib/resolwe_bio/processes/WGBS
2025-05-31T02:11:10,324   copying resolwe_bio/processes/WGBS/walt_index.py -> build/lib/resolwe_bio/processes/WGBS
2025-05-31T02:11:10,327   copying resolwe_bio/processes/WGBS/bsrate.py -> build/lib/resolwe_bio/processes/WGBS
2025-05-31T02:11:10,330   creating build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,331   copying resolwe_bio/processes/workflows/geo_import.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,334   copying resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,337   copying resolwe_bio/processes/workflows/quantseq.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,340   copying resolwe_bio/processes/workflows/bbduk_star.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,343   copying resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,346   copying resolwe_bio/processes/workflows/cut_and_run.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,349   copying resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,352   copying resolwe_bio/processes/workflows/wgs_gvcf.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,355   copying resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:10,360   creating build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,361   copying resolwe_bio/processes/alignment/bowtie_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,364   copying resolwe_bio/processes/alignment/bwamem2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,366   copying resolwe_bio/processes/alignment/star.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,369   copying resolwe_bio/processes/alignment/star_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,372   copying resolwe_bio/processes/alignment/bwa_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,375   copying resolwe_bio/processes/alignment/hisat2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,377   copying resolwe_bio/processes/alignment/bowtie2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-05-31T02:11:10,380   creating build/lib/resolwe_bio/processes/microarray
2025-05-31T02:11:10,381   copying resolwe_bio/processes/microarray/methylation_arrays.py -> build/lib/resolwe_bio/processes/microarray
2025-05-31T02:11:10,384   copying resolwe_bio/processes/microarray/microarray_expression.py -> build/lib/resolwe_bio/processes/microarray
2025-05-31T02:11:10,387   copying resolwe_bio/processes/microarray/map_probes.py -> build/lib/resolwe_bio/processes/microarray
2025-05-31T02:11:10,390   creating build/lib/resolwe_bio/processes/annotation
2025-05-31T02:11:10,392   copying resolwe_bio/processes/annotation/variant_annotation.py -> build/lib/resolwe_bio/processes/annotation
2025-05-31T02:11:10,395   creating build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,397   copying resolwe_bio/processes/support_processors/mutations_table.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,400   copying resolwe_bio/processes/support_processors/qorts_qc.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,403   copying resolwe_bio/processes/support_processors/insert_size.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,405   copying resolwe_bio/processes/support_processors/wgs_metrics.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,408   copying resolwe_bio/processes/support_processors/seqtk.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,411   copying resolwe_bio/processes/support_processors/rnaseqc_qc.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,414   copying resolwe_bio/processes/support_processors/merge_samples.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,416   copying resolwe_bio/processes/support_processors/umi_tools.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,419   copying resolwe_bio/processes/support_processors/bam_conversion.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,421   copying resolwe_bio/processes/support_processors/multiqc.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,425   copying resolwe_bio/processes/support_processors/gtf_to_bed.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,427   copying resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,429   copying resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,431   copying resolwe_bio/processes/support_processors/alignment_summary.py -> build/lib/resolwe_bio/processes/support_processors
2025-05-31T02:11:10,435   creating build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,436   copying resolwe_bio/processes/samtools/samtools_bedcov.py -> build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,438   copying resolwe_bio/processes/samtools/samtools_view.py -> build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,441   copying resolwe_bio/processes/samtools/samtools_mpileup.py -> build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,444   copying resolwe_bio/processes/samtools/samtools_depth.py -> build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,446   copying resolwe_bio/processes/samtools/samtools_coverage.py -> build/lib/resolwe_bio/processes/samtools
2025-05-31T02:11:10,450   creating build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,451   copying resolwe_bio/processes/import_data/ml_ready_reference.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,454   copying resolwe_bio/processes/import_data/sra_file.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,456   copying resolwe_bio/processes/import_data/basespace.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,459   copying resolwe_bio/processes/import_data/seq_reads.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,462   copying resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,464   copying resolwe_bio/processes/import_data/nucleotide_seq.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,467   copying resolwe_bio/processes/import_data/metadata.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,469   copying resolwe_bio/processes/import_data/geneset.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,472   copying resolwe_bio/processes/import_data/methylation_array_idat.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,474   copying resolwe_bio/processes/import_data/expressions.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,477   copying resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,479   copying resolwe_bio/processes/import_data/annotation_bedpe.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,482   copying resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:10,485   creating build/lib/resolwe_bio/variants/tests
2025-05-31T02:11:10,486   copying resolwe_bio/variants/tests/test_variant.py -> build/lib/resolwe_bio/variants/tests
2025-05-31T02:11:10,491   copying resolwe_bio/variants/tests/__init__.py -> build/lib/resolwe_bio/variants/tests
2025-05-31T02:11:10,493   copying resolwe_bio/variants/tests/test_process.py -> build/lib/resolwe_bio/variants/tests
2025-05-31T02:11:10,496   creating build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,497   copying resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,499   copying resolwe_bio/variants/migrations/__init__.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,501   copying resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,504   copying resolwe_bio/variants/migrations/0009_alter_variant_alternative_alter_variant_reference.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,506   copying resolwe_bio/variants/migrations/0002_rename_unfiltered_allele_depth_variantcall_alternative_allele_depth.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,508   copying resolwe_bio/variants/migrations/0005_alter_variantannotation_clinical_diagnosis.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,509   copying resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,511   copying resolwe_bio/variants/migrations/0001_initial.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,514   copying resolwe_bio/variants/migrations/0008_alter_variantannotation_clinical_diagnosis_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,516   copying resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-05-31T02:11:10,521   running egg_info
2025-05-31T02:11:10,538   writing resolwe_bio.egg-info/PKG-INFO
2025-05-31T02:11:10,551   writing dependency_links to resolwe_bio.egg-info/dependency_links.txt
2025-05-31T02:11:10,557   writing requirements to resolwe_bio.egg-info/requires.txt
2025-05-31T02:11:10,559   writing top-level names to resolwe_bio.egg-info/top_level.txt
2025-05-31T02:11:10,805   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-05-31T02:11:10,809   reading manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:10,875   reading manifest template 'MANIFEST.in'
2025-05-31T02:11:10,902   warning: no files found matching '.pylintrc'
2025-05-31T02:11:10,902   warning: no files found matching 'tests/docker-compose.yml'
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2025-05-31T02:11:11,736   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-05-31T02:11:11,737   adding license file 'LICENSE'
2025-05-31T02:11:11,806   writing manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-05-31T02:11:12,002   creating build/lib/resolwe_bio/descriptors
2025-05-31T02:11:12,003   copying resolwe_bio/descriptors/geneset.yml -> build/lib/resolwe_bio/descriptors
2025-05-31T02:11:12,006   copying resolwe_bio/descriptors/reads.yml -> build/lib/resolwe_bio/descriptors
2025-05-31T02:11:12,008   copying resolwe_bio/descriptors/dicty_time_series.yml -> build/lib/resolwe_bio/descriptors
2025-05-31T02:11:12,010   copying resolwe_bio/descriptors/diffexp.yml -> build/lib/resolwe_bio/descriptors
2025-05-31T02:11:12,012   creating build/lib/resolwe_bio/fixtures
2025-05-31T02:11:12,013   copying resolwe_bio/fixtures/relationtypes.yaml -> build/lib/resolwe_bio/fixtures
2025-05-31T02:11:12,015   copying resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:12,018   copying resolwe_bio/kb/migrations/triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:12,021   copying resolwe_bio/kb/migrations/triggers_feature_2.sql -> build/lib/resolwe_bio/kb/migrations
2025-05-31T02:11:12,023   copying resolwe_bio/migrations/resolwe_indexes_3.sql -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:12,026   copying resolwe_bio/migrations/resolwe_indexes_2.sql -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:12,029   copying resolwe_bio/migrations/resolwe_indexes.sql -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:12,031   copying resolwe_bio/migrations/remove_resolwe_indexes.sql -> build/lib/resolwe_bio/migrations
2025-05-31T02:11:12,034   copying resolwe_bio/processes/differential_expression/abstract.yml -> build/lib/resolwe_bio/processes/differential_expression
2025-05-31T02:11:12,038   copying resolwe_bio/processes/expression/cuffquant.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,041   copying resolwe_bio/processes/expression/abstract.yml -> build/lib/resolwe_bio/processes/expression
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2025-05-31T02:11:12,047   copying resolwe_bio/processes/expression/mappability.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,050   copying resolwe_bio/processes/expression/salmon_index.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,052   copying resolwe_bio/processes/expression/merge_expressions.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,055   copying resolwe_bio/processes/expression/dicty_bcm.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,058   copying resolwe_bio/processes/expression/cufflinks.yml -> build/lib/resolwe_bio/processes/expression
2025-05-31T02:11:12,061   copying resolwe_bio/processes/reads_processing/cutadapt.yml -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:12,064   copying resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/lib/resolwe_bio/processes/reads_processing
2025-05-31T02:11:12,067   copying resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:12,071   copying resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-05-31T02:11:12,074   copying resolwe_bio/processes/chip_seq/macs14.yml -> build/lib/resolwe_bio/processes/chip_seq
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2025-05-31T02:11:12,081   creating build/lib/resolwe_bio/processes/plots
2025-05-31T02:11:12,082   copying resolwe_bio/processes/plots/bamplot.yml -> build/lib/resolwe_bio/processes/plots
2025-05-31T02:11:12,085   copying resolwe_bio/processes/plots/bamliquidator.yml -> build/lib/resolwe_bio/processes/plots
2025-05-31T02:11:12,088   copying resolwe_bio/processes/WGBS/hmr.yml -> build/lib/resolwe_bio/processes/WGBS
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2025-05-31T02:11:12,096   copying resolwe_bio/processes/workflows/cuffquant.yml -> build/lib/resolwe_bio/processes/workflows
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2025-05-31T02:11:12,122   copying resolwe_bio/processes/workflows/chemut.yml -> build/lib/resolwe_bio/processes/workflows
2025-05-31T02:11:12,125   copying resolwe_bio/processes/alignment/abstract.yml -> build/lib/resolwe_bio/processes/alignment
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2025-05-31T02:11:12,140   creating build/lib/resolwe_bio/processes/junctions
2025-05-31T02:11:12,141   copying resolwe_bio/processes/junctions/regtools.yml -> build/lib/resolwe_bio/processes/junctions
2025-05-31T02:11:12,145   copying resolwe_bio/processes/annotation/abstract.yml -> build/lib/resolwe_bio/processes/annotation
2025-05-31T02:11:12,147   copying resolwe_bio/processes/support_processors/archive.yml -> build/lib/resolwe_bio/processes/support_processors
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2025-05-31T02:11:12,157   creating build/lib/resolwe_bio/processes/unit_tests
2025-05-31T02:11:12,159   copying resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/lib/resolwe_bio/processes/unit_tests
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2025-05-31T02:11:12,181   copying resolwe_bio/processes/import_data/differential_exp.yml -> build/lib/resolwe_bio/processes/import_data
2025-05-31T02:11:12,184   copying resolwe_bio/processes/import_data/variants_vcf.yml -> build/lib/resolwe_bio/processes/import_data
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2025-05-31T02:11:12,255   copying resolwe_bio/tools/tximport_summarize.R -> build/lib/resolwe_bio/tools
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2025-05-31T02:11:12,265   copying resolwe_bio/tools/extract_umi.sh -> build/lib/resolwe_bio/tools
2025-05-31T02:11:12,268   copying resolwe_bio/tools/detect_strandedness.sh -> build/lib/resolwe_bio/tools
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2025-05-31T02:11:13,299   copying resolwe_bio/tests/files/report_variants/input/ensembl.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:13,302   copying resolwe_bio/tests/files/report_variants/input/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:13,305   copying resolwe_bio/tests/files/report_variants/input/filtered_variants_clinvar.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:13,308   copying resolwe_bio/tests/files/report_variants/input/no_mutation.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:13,311   creating build/lib/resolwe_bio/tests/files/workflow_cutnrun/output
2025-05-31T02:11:13,313   copying resolwe_bio/tests/files/workflow_cutnrun/output/normalized.bigwig -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/output
2025-05-31T02:11:13,317   creating build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:13,318   copying resolwe_bio/tests/files/workflow_cutnrun/input/GRCh38_chr1_1_1M.fasta.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:13,339   copying resolwe_bio/tests/files/workflow_cutnrun/input/mate1.fq.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:13,356   copying resolwe_bio/tests/files/workflow_cutnrun/input/mate2.fq.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:13,374   copying resolwe_bio/tests/files/workflow_cutnrun/input/promoters_hsapiens_grch38_ensembl_109_small.bed -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:13,376   creating build/lib/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:13,378   copying resolwe_bio/tests/files/snpeff/output/extracted_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:13,381   copying resolwe_bio/tests/files/snpeff/output/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:13,383   copying resolwe_bio/tests/files/snpeff/output/multi_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:13,387   copying resolwe_bio/tests/files/snpeff/output/variants_set.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:13,389   creating build/lib/resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:13,390   copying resolwe_bio/tests/files/snpeff/input/dbsnp.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:13,393   copying resolwe_bio/tests/files/snpeff/input/filtered_snpeff.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:13,396   copying resolwe_bio/tests/files/snpeff/input/set_of_genes.txt -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:13,398   creating build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,399   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,403   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_overlap_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,405   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_unal_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,408   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_paired_end_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,410   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,412   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_use_SE_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,415   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,417   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,420   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:13,422   creating build/lib/resolwe_bio/tests/files/test_bowtie2/input
2025-05-31T02:11:13,423   copying resolwe_bio/tests/files/test_bowtie2/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/input
2025-05-31T02:11:13,426   creating build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,427   copying resolwe_bio/tests/files/xengsort/output/classification_stats_paired.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,430   copying resolwe_bio/tests/files/xengsort/output/classification_stats_single.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,432   copying resolwe_bio/tests/files/xengsort/output/graft_reads_1.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,435   copying resolwe_bio/tests/files/xengsort/output/graft_reads_2.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,437   copying resolwe_bio/tests/files/xengsort/output/graft_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,439   copying resolwe_bio/tests/files/xengsort/output/index_stats.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,441   copying resolwe_bio/tests/files/xengsort/output/xgensort_index.tar.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:13,444   creating build/lib/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:13,445   copying resolwe_bio/tests/files/xengsort/input/SRR9130497_100_1.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:13,448   copying resolwe_bio/tests/files/xengsort/input/SRR9130497_100_2.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:13,451   copying resolwe_bio/tests/files/xengsort/input/hsa_GRCh38_chr8_127735500-127736500.fasta.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:13,453   copying resolwe_bio/tests/files/xengsort/input/mmu_GRCm38_chr15_61857500-61858500.fasta.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:13,455   creating build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,457   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,459   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.meth.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,462   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.mr.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,466   copying resolwe_bio/tests/files/wgbs/output/Escherichia_phage_bsrate.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,470   copying resolwe_bio/tests/files/wgbs/output/genome.fasta -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,473   copying resolwe_bio/tests/files/wgbs/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,475   copying resolwe_bio/tests/files/wgbs/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,477   copying resolwe_bio/tests/files/wgbs/output/methconts_report.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,480   copying resolwe_bio/tests/files/wgbs/output/walt_index.tar.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,500   copying resolwe_bio/tests/files/wgbs/output/walt_report.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:13,503   creating build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,504   copying resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,508   copying resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,513   copying resolwe_bio/tests/files/wgbs/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,516   copying resolwe_bio/tests/files/wgbs/input/hg19_chr2 17k.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,519   copying resolwe_bio/tests/files/wgbs/input/spike_in_lambda.mr.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,524   copying resolwe_bio/tests/files/wgbs/input/unmethylated_lambda_J02459.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:13,528   creating build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:13,529   copying resolwe_bio/tests/files/nucl_seq/output/genome.dict -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:13,533   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:13,535   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:13,538   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:13,540   creating build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,542   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fa.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,545   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,548   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,552   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fastq.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,555   copying resolwe_bio/tests/files/nucl_seq/input/empty.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,557   copying resolwe_bio/tests/files/nucl_seq/input/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,560   copying resolwe_bio/tests/files/nucl_seq/input/incomplete.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,563   copying resolwe_bio/tests/files/nucl_seq/input/malformed.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:13,565   creating build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:13,567   copying resolwe_bio/tests/files/test_alignmentsieve/output/filtered_max_149_stats.txt -> build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:13,570   copying resolwe_bio/tests/files/test_alignmentsieve/output/filtered_min_150_stats.txt -> build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:13,574   creating build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:13,576   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:13,578   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes_euclidean.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:13,581   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes_pearson.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:13,584   creating build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:13,586   copying resolwe_bio/tests/files/salmon_quant/output/salmon_counts.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:13,589   copying resolwe_bio/tests/files/salmon_quant/output/salmon_quant_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:13,591   copying resolwe_bio/tests/files/salmon_quant/output/salmon_transcripts_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:13,594   copying resolwe_bio/tests/files/salmon_quant/output/variance_salmon.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:13,597   creating build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:13,598   copying resolwe_bio/tests/files/salmon_quant/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:13,601   copying resolwe_bio/tests/files/salmon_quant/input/hs cdna.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:13,604   copying resolwe_bio/tests/files/salmon_quant/input/hs sim_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:13,607   creating build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,609   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_cpm.tab.g -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,612   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,615   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,617   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,620   copying resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,623   copying resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:13,625   creating build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,627   copying resolwe_bio/tests/files/test_bwa/output/bwa-mem2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,631   copying resolwe_bio/tests/files/test_bwa/output/bwa_bt_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,633   copying resolwe_bio/tests/files/test_bwa/output/bwa_bt_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,636   copying resolwe_bio/tests/files/test_bwa/output/bwa_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,639   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem1_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,642   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem1_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,645   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,648   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,651   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_unmapped_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,654   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_mapped.bam -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,657   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,660   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_mapped.bam -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,663   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,666   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,669   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,671   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:13,674   creating build/lib/resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:13,676   copying resolwe_bio/tests/files/test_bwa/input/bwa-mem2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:13,679   copying resolwe_bio/tests/files/test_bwa/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:13,682   creating build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,684   copying resolwe_bio/tests/files/test_upload_expression/output/cuffquant_exp_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,687   copying resolwe_bio/tests/files/test_upload_expression/output/exp.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,689   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,692   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_norm.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,695   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,697   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions3.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,701   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions5.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,704   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,707   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,710   copying resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,712   copying resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,715   copying resolwe_bio/tests/files/test_upload_expression/output/mm_ncbi_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,718   copying resolwe_bio/tests/files/test_upload_expression/output/upload_exp_norm_set.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:13,720   creating build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,722   copying resolwe_bio/tests/files/test_upload_expression/input/cuffquant_exp.tab -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,725   copying resolwe_bio/tests/files/test_upload_expression/input/exp.1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,728   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,731   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.xlsx.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,734   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,737   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,740   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tsv.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,743   copying resolwe_bio/tests/files/test_upload_expression/input/exp_mac_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,746   copying resolwe_bio/tests/files/test_upload_expression/input/exp_unix_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,748   copying resolwe_bio/tests/files/test_upload_expression/input/exp_windows_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,750   copying resolwe_bio/tests/files/test_upload_expression/input/mm_ncbi_exp.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:13,753   creating build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,754   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,758   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants_mask.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,761   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants_multi_sample.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,764   copying resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,767   copying resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants_multi.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:13,770   creating build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:13,771   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000.fasta.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:13,774   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:13,778   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000_multi_sample.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:13,781   creating build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,783   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,787   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_paired_reads_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,790   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_single_reads_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,792   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_use_SE_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,795   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,797   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,800   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:13,802   creating build/lib/resolwe_bio/tests/files/test_bowtie/input
2025-05-31T02:11:13,803   copying resolwe_bio/tests/files/test_bowtie/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/input
2025-05-31T02:11:13,806   creating build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,808   copying resolwe_bio/tests/files/chemut/output/GATKvariants_raw.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,811   copying resolwe_bio/tests/files/chemut/output/chemut.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,814   copying resolwe_bio/tests/files/chemut/output/indel_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,817   copying resolwe_bio/tests/files/chemut/output/snv_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,820   copying resolwe_bio/tests/files/chemut/output/variant_filtered.txt -> build/lib/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:13,822   creating build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,824   copying resolwe_bio/tests/files/chemut/input/AX4_mate1.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,828   copying resolwe_bio/tests/files/chemut/input/AX4_mate2.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,832   copying resolwe_bio/tests/files/chemut/input/CM_mate1.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,836   copying resolwe_bio/tests/files/chemut/input/CM_mate2.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,840   copying resolwe_bio/tests/files/chemut/input/chemut_genome.fasta.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,843   copying resolwe_bio/tests/files/chemut/input/dd_chr1.fasta.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,845   copying resolwe_bio/tests/files/chemut/input/variant_calling_filtering.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:13,848   creating build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:13,850   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.gatkHC4.vcf.gz -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:13,852   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:13,855   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam.bai -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:13,857   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:13,860   creating build/lib/resolwe_bio/tests/files/haplotypecaller/input
2025-05-31T02:11:13,861   copying resolwe_bio/tests/files/haplotypecaller/input/56G_masterfile_test_merged_targets_5col.bed -> build/lib/resolwe_bio/tests/files/haplotypecaller/input
2025-05-31T02:11:13,863   creating build/lib/resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:13,865   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:13,867   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:13,870   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_single_end.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:13,872   creating build/lib/resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:13,873   copying resolwe_bio/tests/files/seqtk/input/hs_paired_R1_workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:13,876   copying resolwe_bio/tests/files/seqtk/input/hs_paired_R2_workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:13,879   copying resolwe_bio/tests/files/seqtk/input/hs_single_bbduk_star_htseq_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:13,882   creating build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,884   copying resolwe_bio/tests/files/test_star/output/ReadsPerGene.out.tab.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,886   copying resolwe_bio/tests/files/test_star/output/exp_summary.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,889   copying resolwe_bio/tests/files/test_star/output/hs_paired_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,891   copying resolwe_bio/tests/files/test_star/output/hs_single_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,894   copying resolwe_bio/tests/files/test_star/output/paired_lanes_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,896   copying resolwe_bio/tests/files/test_star/output/single_lanes_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,899   copying resolwe_bio/tests/files/test_star/output/star_single_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,901   copying resolwe_bio/tests/files/test_star/output/star_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,904   copying resolwe_bio/tests/files/test_star/output/workflow_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,906   copying resolwe_bio/tests/files/test_star/output/workflow_expressions_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:13,908   creating build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,909   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,912   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,916   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,919   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,922   copying resolwe_bio/tests/files/test_star/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,925   copying resolwe_bio/tests/files/test_star/input/hs genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,927   copying resolwe_bio/tests/files/test_star/input/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,930   copying resolwe_bio/tests/files/test_star/input/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,933   copying resolwe_bio/tests/files/test_star/input/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:13,936   creating build/lib/resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:13,938   copying resolwe_bio/tests/files/bam_processing/output/reads.SInorm.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:13,941   copying resolwe_bio/tests/files/bam_processing/output/reads.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:13,943   copying resolwe_bio/tests/files/bam_processing/output/reads_2.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:13,946   creating build/lib/resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:13,947   copying resolwe_bio/tests/files/bam_processing/input/reads.bedpe -> build/lib/resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:13,949   copying resolwe_bio/tests/files/bam_processing/input/scaffold_418_subset.bed -> build/lib/resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:13,952   creating build/lib/resolwe_bio/tests/files/chipqc/output
2025-05-31T02:11:13,953   copying resolwe_bio/tests/files/chipqc/output/PeakProfile_mqc.png -> build/lib/resolwe_bio/tests/files/chipqc/output
2025-05-31T02:11:13,958   creating build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,959   copying resolwe_bio/tests/files/chipqc/input/SRR5675973_chr17_peaks.xls -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,962   copying resolwe_bio/tests/files/chipqc/input/SRR5675976_chr17.bam -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,982   copying resolwe_bio/tests/files/chipqc/input/macs14_case_duplicated.bam -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,986   copying resolwe_bio/tests/files/chipqc/input/macs14_peaks.bed.gz -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,988   copying resolwe_bio/tests/files/chipqc/input/postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:13,991   creating build/lib/resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:13,993   copying resolwe_bio/tests/files/qorts/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:13,995   copying resolwe_bio/tests/files/qorts/input/hs paired.bam -> build/lib/resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:13,998   copying resolwe_bio/tests/files/qorts/input/salmon_cds.fa.gz -> build/lib/resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:14,001   creating build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,003   copying resolwe_bio/tests/files/wgs/output/cohort_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,006   copying resolwe_bio/tests/files/wgs/output/combined_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,009   copying resolwe_bio/tests/files/wgs/output/selected_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,012   copying resolwe_bio/tests/files/wgs/output/selected_variants_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,016   copying resolwe_bio/tests/files/wgs/output/variants.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,019   copying resolwe_bio/tests/files/wgs/output/variants_from_workflow.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,022   copying resolwe_bio/tests/files/wgs/output/wgs_preprocess_bam_stats.txt -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,024   copying resolwe_bio/tests/files/wgs/output/wgs_preprocess_markdups_metrics.txt -> build/lib/resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:14,027   creating build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,029   copying resolwe_bio/tests/files/wgs/input/TP53.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,031   copying resolwe_bio/tests/files/wgs/input/TP53_1.fastq.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,035   copying resolwe_bio/tests/files/wgs/input/TP53_2.fastq.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,039   copying resolwe_bio/tests/files/wgs/input/TP53_aligned_reads.bam -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,044   copying resolwe_bio/tests/files/wgs/input/analysis_ready.bam -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,048   copying resolwe_bio/tests/files/wgs/input/chr17_single_interval.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,051   copying resolwe_bio/tests/files/wgs/input/dbsnp_STK11.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,054   copying resolwe_bio/tests/files/wgs/input/dbsnp_TP53.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,057   copying resolwe_bio/tests/files/wgs/input/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,060   copying resolwe_bio/tests/files/wgs/input/hg38.intervals.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,062   copying resolwe_bio/tests/files/wgs/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,103   copying resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,106   copying resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz.tbi -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,108   copying resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,111   copying resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz.tbi -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,114   copying resolwe_bio/tests/files/wgs/input/vcf_1.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,117   copying resolwe_bio/tests/files/wgs/input/vcf_2.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:14,120   creating build/lib/resolwe_bio/tests/files/goenrichment/output
2025-05-31T02:11:14,122   copying resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_dicty.json.gz -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-05-31T02:11:14,125   copying resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_mouse.json.gz -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-05-31T02:11:14,127   copying resolwe_bio/tests/files/goenrichment/output/mapped_ids.txt -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-05-31T02:11:14,130   creating build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,131   copying resolwe_bio/tests/files/goenrichment/input/gaf_dicty_cropped.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,134   copying resolwe_bio/tests/files/goenrichment/input/gaf_mgi_cropped.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,137   copying resolwe_bio/tests/files/goenrichment/input/go.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,139   copying resolwe_bio/tests/files/goenrichment/input/goa_human.gaf.txt.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,142   copying resolwe_bio/tests/files/goenrichment/input/ontology_dicty_cropped.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,145   copying resolwe_bio/tests/files/goenrichment/input/ontology_mus_cropped.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-05-31T02:11:14,148   creating build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,150   copying resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_genes.json.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,152   copying resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_sample.json.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,155   copying resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_data.json.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,157   copying resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_filtered.json.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,160   copying resolwe_bio/tests/files/hierarchical_clustering/output/sample_cluster_data.json.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:14,163   creating build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,164   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_1.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,167   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_2.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,170   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_3.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,172   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_4.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,175   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_5.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,177   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_6.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,180   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_7.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,183   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int1.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,185   copying resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int2.tab.gz -> build/lib/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:14,188   creating build/lib/resolwe_bio/tests/files/ml_ready/output
2025-05-31T02:11:14,190   copying resolwe_bio/tests/files/ml_ready/output/features.json.gz -> build/lib/resolwe_bio/tests/files/ml_ready/output
2025-05-31T02:11:14,192   creating build/lib/resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:14,194   copying resolwe_bio/tests/files/ml_ready/input/exp_matrix.tsv -> build/lib/resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:14,197   copying resolwe_bio/tests/files/ml_ready/input/preprocessor.pickle -> build/lib/resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:14,199   creating build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,201   copying resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R1_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,204   copying resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R2_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,206   copying resolwe_bio/tests/files/test_fastq_upload/output/Test_S1_L001_R1_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,210   copying resolwe_bio/tests/files/test_fastq_upload/output/merged_single_end_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,213   copying resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,216   copying resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,218   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,221   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw_single.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,224   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:14,226   creating build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,228   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,230   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,233   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,236   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,238   copying resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,241   copying resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,244   copying resolwe_bio/tests/files/test_fastq_upload/input/empty.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,247   copying resolwe_bio/tests/files/test_fastq_upload/input/garbage.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,249   copying resolwe_bio/tests/files/test_fastq_upload/input/garbage2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,252   copying resolwe_bio/tests/files/test_fastq_upload/input/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,255   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,257   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1_diff_num_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,260   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1_reordered.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,262   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,265   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2_diff_num_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,268   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2_reordered.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,270   copying resolwe_bio/tests/files/test_fastq_upload/input/missing_qual.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,273   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,276   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,278   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,281   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,284   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,286   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,289   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,292   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,294   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,297   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:14,299   creating build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,301   copying resolwe_bio/tests/files/geo_import/outputs/ERR019653.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,304   copying resolwe_bio/tests/files/geo_import/outputs/GSE166144_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,307   copying resolwe_bio/tests/files/geo_import/outputs/GSE172293_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,310   copying resolwe_bio/tests/files/geo_import/outputs/GSE176232_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,314   copying resolwe_bio/tests/files/geo_import/outputs/GSE24998_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,318   copying resolwe_bio/tests/files/geo_import/outputs/GSM5252014_mapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,326   copying resolwe_bio/tests/files/geo_import/outputs/SRR13627912.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,329   copying resolwe_bio/tests/files/geo_import/outputs/SRR14743655.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:14,332   creating build/lib/resolwe_bio/tests/files/geo_import/inputs
2025-05-31T02:11:14,333   copying resolwe_bio/tests/files/geo_import/inputs/HuGene-2_0-st_mapping.tsv.gz -> build/lib/resolwe_bio/tests/files/geo_import/inputs
2025-05-31T02:11:14,351   creating build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,352   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,355   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,357   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,360   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,363   copying resolwe_bio/tests/files/basespace_import/output/single_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,366   copying resolwe_bio/tests/files/basespace_import/output/single_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:14,369   creating build/lib/resolwe_bio/tests/files/microarray_mapping/output
2025-05-31T02:11:14,370   copying resolwe_bio/tests/files/microarray_mapping/output/GSM971957_mapped.tsv.gz -> build/lib/resolwe_bio/tests/files/microarray_mapping/output
2025-05-31T02:11:14,373   creating build/lib/resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:14,375   copying resolwe_bio/tests/files/microarray_mapping/input/GSM971957_unmapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:14,377   copying resolwe_bio/tests/files/microarray_mapping/input/mapping.tsv -> build/lib/resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:14,380   creating build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,382   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,384   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,387   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,389   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,392   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_paired_report.txt -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,395   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_report.txt -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,397   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,400   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,402   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:14,404   creating build/lib/resolwe_bio/tests/files/test_hisat2/input
2025-05-31T02:11:14,405   copying resolwe_bio/tests/files/test_hisat2/input/g.enome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/input
2025-05-31T02:11:14,408   creating build/lib/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:14,410   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:14,413   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam.bai -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:14,415   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:14,417   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped_metrics.txt -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:14,420   creating build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:14,421   copying resolwe_bio/tests/files/bamtofastq/output/output_reads_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:14,426   copying resolwe_bio/tests/files/bamtofastq/output/output_reads_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:14,429   creating build/lib/resolwe_bio/tests/files/bamtofastq/input
2025-05-31T02:11:14,431   copying resolwe_bio/tests/files/bamtofastq/input/alignment.bam -> build/lib/resolwe_bio/tests/files/bamtofastq/input
2025-05-31T02:11:14,436   creating build/lib/resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:14,437   copying resolwe_bio/tests/files/arriba/output/expected_discarded_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:14,440   copying resolwe_bio/tests/files/arriba/output/expected_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:14,442   creating build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,444   copying resolwe_bio/tests/files/arriba/input/aligned_samples.bam -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,464   copying resolwe_bio/tests/files/arriba/input/aligned_samples_error.bam -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,478   copying resolwe_bio/tests/files/arriba/input/known_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,481   copying resolwe_bio/tests/files/arriba/input/minigenome.fasta.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,484   copying resolwe_bio/tests/files/arriba/input/minigenome.gtf.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,487   copying resolwe_bio/tests/files/arriba/input/reads_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,498   copying resolwe_bio/tests/files/arriba/input/reads_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:14,507   creating build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:14,509   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_alignment_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:14,512   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_chr2_17k_single.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:14,514   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:14,516   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_wgs_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:14,519   creating build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,520   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_chr2_17k_paired.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,523   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_alignment_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,525   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_insert_size_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,528   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_rrbs_summary_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,530   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_wgs_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:14,533   creating build/lib/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:14,534   copying resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_index.bai -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:14,537   copying resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_stats.txt -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:14,539   copying resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:14,541   copying resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam.bai -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:14,544   creating build/lib/resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:14,545   copying resolwe_bio/tests/files/test_bam/input/alignment_bam_upload_index.bam.bai -> build/lib/resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:14,548   copying resolwe_bio/tests/files/test_bam/input/alignment_name_sorted.bam -> build/lib/resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:14,550   creating build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,552   copying resolwe_bio/tests/files/corall/output/corall_workfow_expression_paired.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,555   copying resolwe_bio/tests/files/corall/output/corall_workfow_expression_single.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,557   copying resolwe_bio/tests/files/corall/output/dedup_paired_stats.txt -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,559   copying resolwe_bio/tests/files/corall/output/dedup_single_stats.txt -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,562   copying resolwe_bio/tests/files/corall/output/mate1_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,564   copying resolwe_bio/tests/files/corall/output/mate2_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,567   copying resolwe_bio/tests/files/corall/output/single_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,570   copying resolwe_bio/tests/files/corall/output/stringtie_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,572   copying resolwe_bio/tests/files/corall/output/stringtie_tpm.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,575   copying resolwe_bio/tests/files/corall/output/stringtie_transcripts.ctab -> build/lib/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:14,577   creating build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,579   copying resolwe_bio/tests/files/corall/input/Homo_sapiens_globin_reference.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,583   copying resolwe_bio/tests/files/corall/input/Homo_sapiens_rRNA.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,586   copying resolwe_bio/tests/files/corall/input/corall_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,588   copying resolwe_bio/tests/files/corall/input/corall_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,591   copying resolwe_bio/tests/files/corall/input/corall_paired.bam -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,594   copying resolwe_bio/tests/files/corall/input/corall_single.bam -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,597   copying resolwe_bio/tests/files/corall/input/corall_single.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,600   copying resolwe_bio/tests/files/corall/input/hs_annotation_chr2_1_45000.gtf.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,602   copying resolwe_bio/tests/files/corall/input/hs_genome_chr2_1_45000.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:14,605   creating build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,607   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bai -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,610   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,612   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,615   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,618   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam.bai -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,620   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_recalibration.table -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:14,624   creating build/lib/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:14,626   copying resolwe_bio/tests/files/bqsr/input/TP53.bed -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:14,628   copying resolwe_bio/tests/files/bqsr/input/dbsnp_STK11.vcf.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:14,631   copying resolwe_bio/tests/files/bqsr/input/dbsnp_TP53.vcf.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:14,635   copying resolwe_bio/tests/files/bqsr/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:14,674   creating build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,676   copying resolwe_bio/tests/files/test_featurecounts/outputs/auto_detect_strand_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,679   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_exp_set.json.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,681   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,683   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,686   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,688   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,691   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,695   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc_with_rg.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,697   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,700   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,703   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,705   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_paired_lanes_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,708   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_per_lane_rc.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,710   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_single_lanes_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,712   copying resolwe_bio/tests/files/test_featurecounts/outputs/per_lane_rc.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:14,715   creating build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,716   copying resolwe_bio/tests/files/test_featurecounts/inputs/annotation_rsem.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,718   copying resolwe_bio/tests/files/test_featurecounts/inputs/bam_with_read_group.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,722   copying resolwe_bio/tests/files/test_featurecounts/inputs/cuffquant_mapping.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,725   copying resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,729   copying resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs_paired.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,735   copying resolwe_bio/tests/files/test_featurecounts/inputs/hg19_chr20_small_modified.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,737   copying resolwe_bio/tests/files/test_featurecounts/inputs/paired_lanes.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,741   copying resolwe_bio/tests/files/test_featurecounts/inputs/reads.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,743   copying resolwe_bio/tests/files/test_featurecounts/inputs/salmon_cds.fa.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,746   copying resolwe_bio/tests/files/test_featurecounts/inputs/single_lanes.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:14,749   creating build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:14,751   copying resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_paired_stats.txt -> build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:14,754   copying resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_stats.txt -> build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:14,756   creating build/lib/resolwe_bio/tests/files/test_subsample_align/input
2025-05-31T02:11:14,757   copying resolwe_bio/tests/files/test_subsample_align/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_subsample_align/input
2025-05-31T02:11:14,760   creating build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:14,761   copying resolwe_bio/tests/files/trimgalore/outputs/mate1_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:14,764   copying resolwe_bio/tests/files/trimgalore/outputs/mate2_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:14,767   creating build/lib/resolwe_bio/tests/files/trimgalore/inputs
2025-05-31T02:11:14,768   copying resolwe_bio/tests/files/trimgalore/inputs/illumina_universal_adapters.fasta.gz -> build/lib/resolwe_bio/tests/files/trimgalore/inputs
2025-05-31T02:11:14,771   creating build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:14,773   copying resolwe_bio/tests/files/rnaseqc/output/chr1_region.bam.metrics_ENSEMBL.tsv -> build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:14,776   copying resolwe_bio/tests/files/rnaseqc/output/chr1_region_ucsc.bam.metrics_UCSC.tsv -> build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:14,779   creating build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,781   copying resolwe_bio/tests/files/metadata_upload/inputs/empty.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,783   copying resolwe_bio/tests/files/metadata_upload/inputs/iris_legacy.TAB -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,785   copying resolwe_bio/tests/files/metadata_upload/inputs/mixed_case_sufix.TsV -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,788   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,790   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.xlsx -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,794   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable_one_to_many.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,796   copying resolwe_bio/tests/files/metadata_upload/inputs/upper_case_sufix.TSV -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:14,798   creating build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:14,800   copying resolwe_bio/tests/files/upload_microarray/output/GSM971958.json.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:14,802   copying resolwe_bio/tests/files/upload_microarray/output/GSM971958_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:14,805   creating build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:14,806   copying resolwe_bio/tests/files/upload_microarray/input/GSM971957_mapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:14,808   copying resolwe_bio/tests/files/upload_microarray/input/GSM971957_unmapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:14,811   creating build/lib/resolwe_bio/tests/files/workflow_wes/output
2025-05-31T02:11:14,812   copying resolwe_bio/tests/files/workflow_wes/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/output
2025-05-31T02:11:14,815   creating build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:14,816   copying resolwe_bio/tests/files/workflow_wes/input/TP53_1.fastq.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:14,820   copying resolwe_bio/tests/files/workflow_wes/input/TP53_2.fastq.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:14,823   creating build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:14,825   copying resolwe_bio/tests/files/test_nanostring_deseq2/outputs/count_matrix.tab.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:14,828   copying resolwe_bio/tests/files/test_nanostring_deseq2/outputs/de_data_deseq.json.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:14,830   creating build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:14,831   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_1_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:14,835   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_2_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:14,837   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_3_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:14,839   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_4_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:14,842   creating build/lib/resolwe_bio/tests/files/variant_refinement/output
2025-05-31T02:11:14,843   copying resolwe_bio/tests/files/variant_refinement/output/variants.refined.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/output
2025-05-31T02:11:14,846   creating build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:14,848   copying resolwe_bio/tests/files/variant_refinement/input/chrX_1_28000.fa.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:14,851   copying resolwe_bio/tests/files/variant_refinement/input/chrX_28000.renamed.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:14,855   copying resolwe_bio/tests/files/variant_refinement/input/snp.recalibrated_chrX_28000.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:14,858   creating build/lib/resolwe_bio/tests/files/variant_annotation/output
2025-05-31T02:11:14,859   copying resolwe_bio/tests/files/variant_annotation/output/annotated_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/output
2025-05-31T02:11:14,862   creating build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,863   copying resolwe_bio/tests/files/variant_annotation/input/canonical_transcripts_ens109.txt.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,874   copying resolwe_bio/tests/files/variant_annotation/input/clinvar.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,876   copying resolwe_bio/tests/files/variant_annotation/input/clinvar_2.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,878   copying resolwe_bio/tests/files/variant_annotation/input/dbsnp.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,882   copying resolwe_bio/tests/files/variant_annotation/input/dbsnp_2.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:14,885   creating build/lib/resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:14,886   copying resolwe_bio/tests/files/diff_exp/output/deseq2_volcano_plot.json.gz -> build/lib/resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:14,889   copying resolwe_bio/tests/files/diff_exp/output/diff_exp_check_types.json.gz -> build/lib/resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:14,891   creating build/lib/resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:14,892   copying resolwe_bio/tests/files/diff_exp/input/deseq2_bad_output.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:14,894   copying resolwe_bio/tests/files/diff_exp/input/deseq2_output.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:14,897   copying resolwe_bio/tests/files/diff_exp/input/diff_exp_check_geneid_type.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:14,899   creating build/lib/resolwe_bio/tests/files/wgs_workflow/output
2025-05-31T02:11:14,901   copying resolwe_bio/tests/files/wgs_workflow/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs_workflow/output
2025-05-31T02:11:14,903   creating build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,905   copying resolwe_bio/tests/files/macs2/output/batch_case_postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,908   copying resolwe_bio/tests/files/macs2/output/batch_case_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,910   copying resolwe_bio/tests/files/macs2/output/case_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,912   copying resolwe_bio/tests/files/macs2/output/control_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,915   copying resolwe_bio/tests/files/macs2/output/postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,917   copying resolwe_bio/tests/files/macs2/output/rose2_enhancer_table.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:14,920   creating build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:14,921   copying resolwe_bio/tests/files/macs2/input/SRR5675973_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:14,940   copying resolwe_bio/tests/files/macs2/input/SRR5675974_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:14,968   copying resolwe_bio/tests/files/macs2/input/SRR5675975_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:14,992   copying resolwe_bio/tests/files/macs2/input/SRR5675976_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:15,022   copying resolwe_bio/tests/files/macs2/input/paired_end_discodeum.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:15,025   copying resolwe_bio/tests/files/macs2/input/promoter_regions.bed -> build/lib/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:15,027   creating build/lib/resolwe_bio/tests/files/annotation_bedpe/input
2025-05-31T02:11:15,029   copying resolwe_bio/tests/files/annotation_bedpe/input/alk.bedpe -> build/lib/resolwe_bio/tests/files/annotation_bedpe/input
2025-05-31T02:11:15,031   creating build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,033   copying resolwe_bio/tests/files/bbduk/output/bbduk_fw_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,035   copying resolwe_bio/tests/files/bbduk/output/bbduk_rv_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,038   copying resolwe_bio/tests/files/bbduk/output/bbduk_test_reads_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,040   copying resolwe_bio/tests/files/bbduk/output/fw_reads_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,042   copying resolwe_bio/tests/files/bbduk/output/rRNA_forw_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:15,045   creating build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,046   copying resolwe_bio/tests/files/bbduk/input/barcodes.fasta -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,048   copying resolwe_bio/tests/files/bbduk/input/bbduk_adapters.fasta -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,051   copying resolwe_bio/tests/files/bbduk/input/bbduk_test_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,054   copying resolwe_bio/tests/files/bbduk/input/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,056   copying resolwe_bio/tests/files/bbduk/input/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:15,058   creating build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,060   copying resolwe_bio/tests/files/samtools/outputs/bedfile.bam_stats.txt -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,062   copying resolwe_bio/tests/files/samtools/outputs/coverage_multi.tsv -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,065   copying resolwe_bio/tests/files/samtools/outputs/coverage_single.tsv -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,068   copying resolwe_bio/tests/files/samtools/outputs/regions.bam_stats.txt -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,070   copying resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,072   copying resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage_mean.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,075   copying resolwe_bio/tests/files/samtools/outputs/samtools_bed.bam -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,077   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_counts.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,080   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_depth.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,082   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,084   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup_2.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:15,086   creating build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,088   copying resolwe_bio/tests/files/samtools/inputs/regions.txt -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,090   copying resolwe_bio/tests/files/samtools/inputs/regions_bed.bed -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,092   copying resolwe_bio/tests/files/samtools/inputs/samtools_in.bam -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,095   copying resolwe_bio/tests/files/samtools/inputs/samtools_in.bam.bai -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,099   copying resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,102   copying resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam.bai -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:15,106   creating build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,107   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1.bam_stats.txt -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,110   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1_markduplicates_metrics.txt -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,112   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,115   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_bam.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,118   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_geneset.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:15,121   creating build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,122   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.fasta.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,125   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.vcf.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,128   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,133   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/dbsnp-hg38.vcf.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,136   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/hg38.intervals.bed -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:15,139   creating build/lib/resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:15,140   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:15,145   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam.bai -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:15,148   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam_stats.txt -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:15,150   creating build/lib/resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:15,152   copying resolwe_bio/tests/files/bamclipper/input/TP53.bam -> build/lib/resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:15,156   copying resolwe_bio/tests/files/bamclipper/input/TP53.bedpe -> build/lib/resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:15,159   creating build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:15,160   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:15,163   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_euclidean.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:15,165   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_genes.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:15,167   creating build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,169   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,171   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,174   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,176   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,178   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2_partial_match.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,181   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,183   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,186   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_constant_8h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,188   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_different_genes.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:15,190   creating build/lib/resolwe_bio/tests/files/splitNcigar_reads/output
2025-05-31T02:11:15,192   copying resolwe_bio/tests/files/splitNcigar_reads/output/split_cigar_stats.txt -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/output
2025-05-31T02:11:15,195   creating build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:15,196   copying resolwe_bio/tests/files/splitNcigar_reads/input/chr1_1-15000.fasta.gz -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:15,198   copying resolwe_bio/tests/files/splitNcigar_reads/input/chr1_500.bam -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:15,201   creating build/lib/resolwe_bio/tests/files/variants_to_table/output
2025-05-31T02:11:15,203   copying resolwe_bio/tests/files/variants_to_table/output/variants_to_table.tsv -> build/lib/resolwe_bio/tests/files/variants_to_table/output
2025-05-31T02:11:15,205   creating build/lib/resolwe_bio/tests/files/variants_to_table/input
2025-05-31T02:11:15,207   copying resolwe_bio/tests/files/variants_to_table/input/refined_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variants_to_table/input
2025-05-31T02:11:15,357   installing to build/bdist.linux-armv7l/wheel
2025-05-31T02:11:15,358   running install
2025-05-31T02:11:15,383   running install_lib
2025-05-31T02:11:15,391   creating build/bdist.linux-armv7l/wheel
2025-05-31T02:11:15,393   creating build/bdist.linux-armv7l/wheel/resolwe_bio
2025-05-31T02:11:15,395   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests
2025-05-31T02:11:15,397   copying build/lib/resolwe_bio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests
2025-05-31T02:11:15,404   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files
2025-05-31T02:11:15,407   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow
2025-05-31T02:11:15,409   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow/output
2025-05-31T02:11:15,411   copying build/lib/resolwe_bio/tests/files/salmon_workflow/output/single_end_exp.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/output
2025-05-31T02:11:15,413   copying build/lib/resolwe_bio/tests/files/salmon_workflow/output/paired_end_exp.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/output
2025-05-31T02:11:15,416   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,418   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,422   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,425   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,428   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,434   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,436   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,439   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,441   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,444   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-05-31T02:11:15,447   copying build/lib/resolwe_bio/tests/files/subread_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,450   copying build/lib/resolwe_bio/tests/files/hisat2_paired_ncbi_bigwig.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,453   copying build/lib/resolwe_bio/tests/files/features_update.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,456   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation
2025-05-31T02:11:15,458   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation/inputs
2025-05-31T02:11:15,460   copying build/lib/resolwe_bio/tests/files/methylation/inputs/wrong_sample_name_Blue.idat.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/inputs
2025-05-31T02:11:15,463   copying build/lib/resolwe_bio/tests/files/methylation/inputs/illumina_probe_ids_to_ensembl.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/inputs
2025-05-31T02:11:15,466   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation/output
2025-05-31T02:11:15,467   copying build/lib/resolwe_bio/tests/files/methylation/output/QC_data.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/output
2025-05-31T02:11:15,470   copying build/lib/resolwe_bio/tests/files/sp_test.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,473   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants
2025-05-31T02:11:15,475   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants/output
2025-05-31T02:11:15,477   copying build/lib/resolwe_bio/tests/files/report_variants/output/mutations_KRAS.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-05-31T02:11:15,479   copying build/lib/resolwe_bio/tests/files/report_variants/output/ensembl_variants.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-05-31T02:11:15,482   copying build/lib/resolwe_bio/tests/files/report_variants/output/mutations_clinvar.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-05-31T02:11:15,485   copying build/lib/resolwe_bio/tests/files/report_variants/output/no_mutations.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-05-31T02:11:15,489   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,490   copying build/lib/resolwe_bio/tests/files/report_variants/input/ensembl.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,493   copying build/lib/resolwe_bio/tests/files/report_variants/input/filtered_variants_clinvar.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,495   copying build/lib/resolwe_bio/tests/files/report_variants/input/KRAS_annotated.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,498   copying build/lib/resolwe_bio/tests/files/report_variants/input/ensembl.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,501   copying build/lib/resolwe_bio/tests/files/report_variants/input/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,504   copying build/lib/resolwe_bio/tests/files/report_variants/input/no_mutation.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,506   copying build/lib/resolwe_bio/tests/files/report_variants/input/KRAS_mutation.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,509   copying build/lib/resolwe_bio/tests/files/report_variants/input/chr12_KRAS_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,513   copying build/lib/resolwe_bio/tests/files/report_variants/input/empty.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-05-31T02:11:15,516   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun
2025-05-31T02:11:15,517   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun/output
2025-05-31T02:11:15,519   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/output/normalized.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/output
2025-05-31T02:11:15,522   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:15,523   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:15,534   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/GRCh38_chr1_1_1M.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:15,543   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/promoters_hsapiens_grch38_ensembl_109_small.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:15,545   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-05-31T02:11:15,556   copying build/lib/resolwe_bio/tests/files/macs14_control.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,561   copying build/lib/resolwe_bio/tests/files/cutadapt_paired_forward_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,563   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/snpeff
2025-05-31T02:11:15,565   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:15,566   copying build/lib/resolwe_bio/tests/files/snpeff/output/variants_set.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:15,569   copying build/lib/resolwe_bio/tests/files/snpeff/output/extracted_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:15,571   copying build/lib/resolwe_bio/tests/files/snpeff/output/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:15,574   copying build/lib/resolwe_bio/tests/files/snpeff/output/multi_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-05-31T02:11:15,577   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:15,579   copying build/lib/resolwe_bio/tests/files/snpeff/input/filtered_snpeff.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:15,581   copying build/lib/resolwe_bio/tests/files/snpeff/input/dbsnp.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:15,584   copying build/lib/resolwe_bio/tests/files/snpeff/input/set_of_genes.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/input
2025-05-31T02:11:15,586   copying build/lib/resolwe_bio/tests/files/geneset_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,588   copying build/lib/resolwe_bio/tests/files/prepeak_se_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,590   copying build/lib/resolwe_bio/tests/files/nanostring_qc_2.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,592   copying build/lib/resolwe_bio/tests/files/feature counts_detect_strandedness.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,595   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2
2025-05-31T02:11:15,597   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,599   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,601   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,603   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,606   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,609   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_unal_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,612   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,614   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_paired_end_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,616   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_use_SE_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,618   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_overlap_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-05-31T02:11:15,621   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2/input
2025-05-31T02:11:15,622   copying build/lib/resolwe_bio/tests/files/test_bowtie2/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/input
2025-05-31T02:11:15,625   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort
2025-05-31T02:11:15,627   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,628   copying build/lib/resolwe_bio/tests/files/xengsort/output/xgensort_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,631   copying build/lib/resolwe_bio/tests/files/xengsort/output/classification_stats_paired.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,633   copying build/lib/resolwe_bio/tests/files/xengsort/output/classification_stats_single.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,635   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,637   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,639   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,641   copying build/lib/resolwe_bio/tests/files/xengsort/output/index_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-05-31T02:11:15,644   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:15,646   copying build/lib/resolwe_bio/tests/files/xengsort/input/SRR9130497_100_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:15,648   copying build/lib/resolwe_bio/tests/files/xengsort/input/hsa_GRCh38_chr8_127735500-127736500.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:15,650   copying build/lib/resolwe_bio/tests/files/xengsort/input/mmu_GRCm38_chr15_61857500-61858500.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:15,653   copying build/lib/resolwe_bio/tests/files/xengsort/input/SRR9130497_100_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-05-31T02:11:15,655   copying build/lib/resolwe_bio/tests/files/reads-map-to-nowhere.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,658   copying build/lib/resolwe_bio/tests/files/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,660   copying build/lib/resolwe_bio/tests/files/exp_7_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,662   copying build/lib/resolwe_bio/tests/files/cuffquant 1.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,665   copying build/lib/resolwe_bio/tests/files/annotation dicty.gff.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,667   copying build/lib/resolwe_bio/tests/files/Test_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,670   copying build/lib/resolwe_bio/tests/files/hs sim_reads2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,672   copying build/lib/resolwe_bio/tests/files/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,676   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs
2025-05-31T02:11:15,678   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,679   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,682   copying build/lib/resolwe_bio/tests/files/wgbs/output/walt_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,684   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,686   copying build/lib/resolwe_bio/tests/files/wgbs/output/walt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,694   copying build/lib/resolwe_bio/tests/files/wgbs/output/methconts_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,696   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,698   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.meth.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,701   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,703   copying build/lib/resolwe_bio/tests/files/wgbs/output/Escherichia_phage_bsrate.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,706   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.mr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-05-31T02:11:15,710   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,711   copying build/lib/resolwe_bio/tests/files/wgbs/input/unmethylated_lambda_J02459.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,715   copying build/lib/resolwe_bio/tests/files/wgbs/input/spike_in_lambda.mr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,718   copying build/lib/resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,723   copying build/lib/resolwe_bio/tests/files/wgbs/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,725   copying build/lib/resolwe_bio/tests/files/wgbs/input/hg19_chr2 17k.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,727   copying build/lib/resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-05-31T02:11:15,731   copying build/lib/resolwe_bio/tests/files/feature_counts hs_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,740   copying build/lib/resolwe_bio/tests/files/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,742   copying build/lib/resolwe_bio/tests/files/fw reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,745   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/import-sra
2025-05-31T02:11:15,746   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/import-sra/output
2025-05-31T02:11:15,748   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR1661332.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-05-31T02:11:15,750   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR2124780.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-05-31T02:11:15,752   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR1661333.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-05-31T02:11:15,754   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR2124781.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-05-31T02:11:15,756   copying build/lib/resolwe_bio/tests/files/3_prime_adapter.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,758   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq
2025-05-31T02:11:15,760   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:15,761   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:15,763   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:15,765   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.dict -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:15,768   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-05-31T02:11:15,771   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,773   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,776   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,778   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,781   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,784   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/incomplete.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,786   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/malformed.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,788   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,790   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/empty.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-05-31T02:11:15,792   copying build/lib/resolwe_bio/tests/files/exp2_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,794   copying build/lib/resolwe_bio/tests/files/cutadapt single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,797   copying build/lib/resolwe_bio/tests/files/expression_htseq.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,799   copying build/lib/resolwe_bio/tests/files/cuffquant_mapping.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,802   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_alignmentsieve
2025-05-31T02:11:15,804   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:15,805   copying build/lib/resolwe_bio/tests/files/test_alignmentsieve/output/filtered_min_150_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:15,808   copying build/lib/resolwe_bio/tests/files/test_alignmentsieve/output/filtered_max_149_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_alignmentsieve/output
2025-05-31T02:11:15,810   copying build/lib/resolwe_bio/tests/files/regtools_from_bam.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,813   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/find_similar
2025-05-31T02:11:15,815   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:15,816   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes_pearson.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:15,818   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes_euclidean.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:15,820   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
2025-05-31T02:11:15,822   copying build/lib/resolwe_bio/tests/files/macs14_chr22.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,825   copying build/lib/resolwe_bio/tests/files/hg19_encode_blacklist_chr22.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,827   copying build/lib/resolwe_bio/tests/files/macs14_peaks.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,829   copying build/lib/resolwe_bio/tests/files/feature counts_detect_strandedness_single.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,831   copying build/lib/resolwe_bio/tests/files/4-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,834   copying build/lib/resolwe_bio/tests/files/hs_gatk_alignment_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,837   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant
2025-05-31T02:11:15,838   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:15,840   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/variance_salmon.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:15,842   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_counts.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:15,844   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_quant_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:15,846   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_transcripts_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-05-31T02:11:15,849   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:15,851   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:15,854   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:15,856   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-05-31T02:11:15,858   copying build/lib/resolwe_bio/tests/files/macs14_summits.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,860   copying build/lib/resolwe_bio/tests/files/exp4_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,863   copying build/lib/resolwe_bio/tests/files/cutadapt_single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,866   copying build/lib/resolwe_bio/tests/files/empty.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,868   copying build/lib/resolwe_bio/tests/files/PGSC upload_sorted.gff3 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,871   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/quantseq
2025-05-31T02:11:15,873   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,875   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,877   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,879   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_cpm.tab.g -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,882   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,884   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,886   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-05-31T02:11:15,888   copying build/lib/resolwe_bio/tests/files/bamplot_alignment.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,892   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa
2025-05-31T02:11:15,894   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,895   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,897   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,899   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_mapped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,901   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa-mem2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,906   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,908   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_unmapped_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,911   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,913   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,916   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,918   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_bt_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,921   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_mapped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,924   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem1_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,926   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem1_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,928   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_bt_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,931   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,933   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-05-31T02:11:15,936   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:15,937   copying build/lib/resolwe_bio/tests/files/test_bwa/input/bwa-mem2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:15,940   copying build/lib/resolwe_bio/tests/files/test_bwa/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/input
2025-05-31T02:11:15,943   copying build/lib/resolwe_bio/tests/files/peaks.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:15,946   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression
2025-05-31T02:11:15,948   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,950   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/cuffquant_exp_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,952   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,954   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions5.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,957   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/mm_ncbi_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,959   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,962   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,965   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_norm.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,967   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions3.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,970   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,973   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/upload_exp_norm_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,976   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,978   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,981   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-05-31T02:11:15,984   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,985   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,987   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_windows_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,989   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp.1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,992   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_unix_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,994   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,996   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:15,998   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:16,000   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.xlsx.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:16,003   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/cuffquant_exp.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:16,005   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_mac_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:16,007   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/mm_ncbi_exp.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-05-31T02:11:16,009   copying build/lib/resolwe_bio/tests/files/fw reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,012   copying build/lib/resolwe_bio/tests/files/walt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,023   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration
2025-05-31T02:11:16,025   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,027   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants_multi_sample.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,031   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants_mask.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,034   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,036   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,039   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants_multi.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-05-31T02:11:16,042   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:16,043   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000_multi_sample.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:16,046   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:16,048   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-05-31T02:11:16,050   copying build/lib/resolwe_bio/tests/files/box_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,052   copying build/lib/resolwe_bio/tests/files/cuffnorm_genes.fpkm_table -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,054   copying build/lib/resolwe_bio/tests/files/rw reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,057   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie
2025-05-31T02:11:16,059   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,061   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,063   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,066   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_single_reads_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,068   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,070   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,074   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_use_SE_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,078   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_paired_reads_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-05-31T02:11:16,080   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie/input
2025-05-31T02:11:16,082   copying build/lib/resolwe_bio/tests/files/test_bowtie/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/input
2025-05-31T02:11:16,084   copying build/lib/resolwe_bio/tests/files/cutadapt_3prime_single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,087   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut
2025-05-31T02:11:16,089   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,090   copying build/lib/resolwe_bio/tests/files/chemut/output/indel_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,092   copying build/lib/resolwe_bio/tests/files/chemut/output/chemut.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,094   copying build/lib/resolwe_bio/tests/files/chemut/output/snv_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,096   copying build/lib/resolwe_bio/tests/files/chemut/output/variant_filtered.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,098   copying build/lib/resolwe_bio/tests/files/chemut/output/GATKvariants_raw.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-05-31T02:11:16,101   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,102   copying build/lib/resolwe_bio/tests/files/chemut/input/CM_mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,106   copying build/lib/resolwe_bio/tests/files/chemut/input/variant_calling_filtering.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,108   copying build/lib/resolwe_bio/tests/files/chemut/input/AX4_mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,112   copying build/lib/resolwe_bio/tests/files/chemut/input/chemut_genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,114   copying build/lib/resolwe_bio/tests/files/chemut/input/AX4_mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,118   copying build/lib/resolwe_bio/tests/files/chemut/input/dd_chr1.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,120   copying build/lib/resolwe_bio/tests/files/chemut/input/CM_mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-05-31T02:11:16,126   copying build/lib/resolwe_bio/tests/files/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,132   copying build/lib/resolwe_bio/tests/files/expression_bcm_rpkm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,135   copying build/lib/resolwe_bio/tests/files/mm10_chr17_44M-45M.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,144   copying build/lib/resolwe_bio/tests/files/atac_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,158   copying build/lib/resolwe_bio/tests/files/deseq2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,161   copying build/lib/resolwe_bio/tests/files/mappings_update.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,163   copying build/lib/resolwe_bio/tests/files/atac_seq_prepeak_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,167   copying build/lib/resolwe_bio/tests/files/sp_test.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,173   copying build/lib/resolwe_bio/tests/files/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,175   copying build/lib/resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,177   copying build/lib/resolwe_bio/tests/files/atac_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,204   copying build/lib/resolwe_bio/tests/files/macs14_treat.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,210   copying build/lib/resolwe_bio/tests/files/rRNA forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,212   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired_wo_adapter_trim_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,214   copying build/lib/resolwe_bio/tests/files/nanostring_lane_attr.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,217   copying build/lib/resolwe_bio/tests/files/SRR2141558_chr1_20k_SJ.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,219   copying build/lib/resolwe_bio/tests/files/reads_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,222   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller
2025-05-31T02:11:16,224   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:16,225   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:16,228   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:16,230   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:16,233   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.gatkHC4.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-05-31T02:11:16,236   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller/input
2025-05-31T02:11:16,238   copying build/lib/resolwe_bio/tests/files/haplotypecaller/input/56G_masterfile_test_merged_targets_5col.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/input
2025-05-31T02:11:16,240   copying build/lib/resolwe_bio/tests/files/reads rsem2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,244   copying build/lib/resolwe_bio/tests/files/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,247   copying build/lib/resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,251   copying build/lib/resolwe_bio/tests/files/pca_plot_3.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,253   copying build/lib/resolwe_bio/tests/files/cutadapt_paired_reverse_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,255   copying build/lib/resolwe_bio/tests/files/igv_human.lf.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,258   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk
2025-05-31T02:11:16,260   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:16,261   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:16,264   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:16,266   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_single_end.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-05-31T02:11:16,270   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:16,271   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_paired_R1_workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:16,274   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_paired_R2_workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:16,276   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_single_bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-05-31T02:11:16,280   copying build/lib/resolwe_bio/tests/files/mappings_gsea.tab.zip -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,494   copying build/lib/resolwe_bio/tests/files/00Hr.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,497   copying build/lib/resolwe_bio/tests/files/matabolic pathway.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,501   copying build/lib/resolwe_bio/tests/files/diffexp_edgeR.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,504   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star
2025-05-31T02:11:16,507   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,509   copying build/lib/resolwe_bio/tests/files/test_star/output/workflow_expressions_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,512   copying build/lib/resolwe_bio/tests/files/test_star/output/paired_lanes_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,516   copying build/lib/resolwe_bio/tests/files/test_star/output/star_single_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,518   copying build/lib/resolwe_bio/tests/files/test_star/output/workflow_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,520   copying build/lib/resolwe_bio/tests/files/test_star/output/hs_single_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,522   copying build/lib/resolwe_bio/tests/files/test_star/output/ReadsPerGene.out.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,524   copying build/lib/resolwe_bio/tests/files/test_star/output/single_lanes_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,526   copying build/lib/resolwe_bio/tests/files/test_star/output/exp_summary.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,528   copying build/lib/resolwe_bio/tests/files/test_star/output/star_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,530   copying build/lib/resolwe_bio/tests/files/test_star/output/hs_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-05-31T02:11:16,533   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,535   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,537   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,540   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,543   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,546   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,550   copying build/lib/resolwe_bio/tests/files/test_star/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,552   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,555   copying build/lib/resolwe_bio/tests/files/test_star/input/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,557   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-05-31T02:11:16,560   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing
2025-05-31T02:11:16,562   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:16,564   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads.SInorm.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:16,566   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads_2.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:16,568   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-05-31T02:11:16,571   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:16,573   copying build/lib/resolwe_bio/tests/files/bam_processing/input/reads.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:16,575   copying build/lib/resolwe_bio/tests/files/bam_processing/input/scaffold_418_subset.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/input
2025-05-31T02:11:16,578   copying build/lib/resolwe_bio/tests/files/old_encoding_transformed_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,580   copying build/lib/resolwe_bio/tests/files/exp_matrix.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,582   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,584   copying build/lib/resolwe_bio/tests/files/hs_b37_chr2_small.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,587   copying build/lib/resolwe_bio/tests/files/igv_human.lf.vcf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,590   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,592   copying build/lib/resolwe_bio/tests/files/PGSC upload.gff3 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,594   copying build/lib/resolwe_bio/tests/files/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,598   copying build/lib/resolwe_bio/tests/files/mirna_featurecounts_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,601   copying build/lib/resolwe_bio/tests/files/features_gsea.tab.zip -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,603   copying build/lib/resolwe_bio/tests/files/s_1_3.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,605   copying build/lib/resolwe_bio/tests/files/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,608   copying build/lib/resolwe_bio/tests/files/HS chr21_ensembl.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,637   copying build/lib/resolwe_bio/tests/files/cutadapt mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,639   copying build/lib/resolwe_bio/tests/files/chr21_sorted_exons.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,641   copying build/lib/resolwe_bio/tests/files/chr21_sorted_gene_id_exon_id.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,644   copying build/lib/resolwe_bio/tests/files/hisat2_paired_ucsc_bigwig.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,646   copying build/lib/resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,649   copying build/lib/resolwe_bio/tests/files/exp_7_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,654   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chipqc/output
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2025-05-31T02:11:16,662   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,664   copying build/lib/resolwe_bio/tests/files/chipqc/input/macs14_case_duplicated.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,668   copying build/lib/resolwe_bio/tests/files/chipqc/input/SRR5675973_chr17_peaks.xls -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,672   copying build/lib/resolwe_bio/tests/files/chipqc/input/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,674   copying build/lib/resolwe_bio/tests/files/chipqc/input/SRR5675976_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,701   copying build/lib/resolwe_bio/tests/files/chipqc/input/macs14_peaks.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-05-31T02:11:16,704   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/qorts
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2025-05-31T02:11:16,706   copying build/lib/resolwe_bio/tests/files/qorts/input/hs paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:16,709   copying build/lib/resolwe_bio/tests/files/qorts/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:16,711   copying build/lib/resolwe_bio/tests/files/qorts/input/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-05-31T02:11:16,712   copying build/lib/resolwe_bio/tests/files/hs_gatk_insert_size_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,716   copying build/lib/resolwe_bio/tests/files/exp1_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-05-31T02:11:16,719   copying build/lib/resolwe_bio/tests/files/regtools_novel_SJ_from_bam.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,721   copying build/lib/resolwe_bio/tests/files/reads_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,724   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs
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2025-05-31T02:11:16,730   copying build/lib/resolwe_bio/tests/files/wgs/output/wgs_preprocess_markdups_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:16,732   copying build/lib/resolwe_bio/tests/files/wgs/output/variants_from_workflow.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:16,734   copying build/lib/resolwe_bio/tests/files/wgs/output/variants.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:16,737   copying build/lib/resolwe_bio/tests/files/wgs/output/combined_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
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2025-05-31T02:11:16,741   copying build/lib/resolwe_bio/tests/files/wgs/output/selected_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:16,744   copying build/lib/resolwe_bio/tests/files/wgs/output/selected_variants_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-05-31T02:11:16,747   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs/input
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2025-05-31T02:11:16,751   copying build/lib/resolwe_bio/tests/files/wgs/input/vcf_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
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2025-05-31T02:11:16,756   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_aligned_reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
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2025-05-31T02:11:16,763   copying build/lib/resolwe_bio/tests/files/wgs/input/dbsnp_STK11.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
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2025-05-31T02:11:16,767   copying build/lib/resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,769   copying build/lib/resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,772   copying build/lib/resolwe_bio/tests/files/wgs/input/analysis_ready.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,775   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,778   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,781   copying build/lib/resolwe_bio/tests/files/wgs/input/chr17_single_interval.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,783   copying build/lib/resolwe_bio/tests/files/wgs/input/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,786   copying build/lib/resolwe_bio/tests/files/wgs/input/hg38.intervals.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,788   copying build/lib/resolwe_bio/tests/files/wgs/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-05-31T02:11:16,827   copying build/lib/resolwe_bio/tests/files/wgs/input/dbsnp_TP53.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
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2025-05-31T02:11:16,846   copying build/lib/resolwe_bio/tests/files/ensembl-vep/output/cache_homo_sapiens_X.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/output
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2025-05-31T02:11:16,955   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/sample_cluster_data.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:16,958   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_sample.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:16,960   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_filtered.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:16,962   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_data.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:16,964   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-05-31T02:11:16,967   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,968   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,971   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_7.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,973   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,975   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_6.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,978   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_5.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,980   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,982   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_4.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,984   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,986   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-05-31T02:11:16,988   copying build/lib/resolwe_bio/tests/files/cutadapt_single1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,991   copying build/lib/resolwe_bio/tests/files/reads rsem.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,993   copying build/lib/resolwe_bio/tests/files/rRNA_forw_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,995   copying build/lib/resolwe_bio/tests/files/chr1_region_UCSC.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:16,997   copying build/lib/resolwe_bio/tests/files/old_encoding1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,000   copying build/lib/resolwe_bio/tests/files/purpureum_mappability_50.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,002   copying build/lib/resolwe_bio/tests/files/hs_paired_R1_workflow_bbduk_star_htseq_preprocessed_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,004   copying build/lib/resolwe_bio/tests/files/exp_2_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,007   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready
2025-05-31T02:11:17,008   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready/output
2025-05-31T02:11:17,010   copying build/lib/resolwe_bio/tests/files/ml_ready/output/features.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/output
2025-05-31T02:11:17,013   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:17,014   copying build/lib/resolwe_bio/tests/files/ml_ready/input/preprocessor.pickle -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:17,017   copying build/lib/resolwe_bio/tests/files/ml_ready/input/exp_matrix.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/input
2025-05-31T02:11:17,019   copying build/lib/resolwe_bio/tests/files/go_genesets.mgi.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,021   copying build/lib/resolwe_bio/tests/files/exp_8_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,024   copying build/lib/resolwe_bio/tests/files/reads_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,026   copying build/lib/resolwe_bio/tests/files/pca_plot_4.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,029   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload
2025-05-31T02:11:17,031   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,032   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,035   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R2_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,037   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R1_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,040   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/Test_S1_L001_R1_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,042   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,045   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/merged_single_end_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,047   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,049   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,052   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-05-31T02:11:17,055   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,056   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,059   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,061   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,063   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2_diff_num_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,066   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,068   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,071   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/empty.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,073   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,075   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,078   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,080   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2_reordered.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,082   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,085   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/missing_qual.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,087   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,089   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,092   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,094   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,096   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/garbage2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,098   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,101   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1_reordered.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,103   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,105   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/garbage.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,107   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,110   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,112   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,115   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,117   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1_diff_num_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-05-31T02:11:17,120   copying build/lib/resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,122   copying build/lib/resolwe_bio/tests/files/workflow_bbduk_star test.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,124   copying build/lib/resolwe_bio/tests/files/htseq_cpm_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,127   copying build/lib/resolwe_bio/tests/files/clustering_expressions_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,129   copying build/lib/resolwe_bio/tests/files/good.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,131   copying build/lib/resolwe_bio/tests/files/bwa_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,134   copying build/lib/resolwe_bio/tests/files/mirna_featurecounts_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,136   copying build/lib/resolwe_bio/tests/files/exp 4_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,138   copying build/lib/resolwe_bio/tests/files/pca_plot_2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,140   copying build/lib/resolwe_bio/tests/files/regtools_SJ.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,143   copying build/lib/resolwe_bio/tests/files/prepeak_pe_qc_report_tn5.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,145   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import
2025-05-31T02:11:17,147   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,149   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE24998_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,152   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/SRR14743655.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,154   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE176232_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,157   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE172293_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,159   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE166144_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,163   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/SRR13627912.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,166   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSM5252014_mapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,173   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/ERR019653.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-05-31T02:11:17,176   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import/inputs
2025-05-31T02:11:17,177   copying build/lib/resolwe_bio/tests/files/geo_import/inputs/HuGene-2_0-st_mapping.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/inputs
2025-05-31T02:11:17,188   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/basespace_import
2025-05-31T02:11:17,190   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,192   copying build/lib/resolwe_bio/tests/files/basespace_import/output/single_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,194   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,197   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,200   copying build/lib/resolwe_bio/tests/files/basespace_import/output/single_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,202   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,205   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-05-31T02:11:17,208   copying build/lib/resolwe_bio/tests/files/geneset_out.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,210   copying build/lib/resolwe_bio/tests/files/chr1_paired_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,214   copying build/lib/resolwe_bio/tests/files/chr1_paired_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,218   copying build/lib/resolwe_bio/tests/files/HS chr21_short.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,221   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping
2025-05-31T02:11:17,223   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping/output
2025-05-31T02:11:17,225   copying build/lib/resolwe_bio/tests/files/microarray_mapping/output/GSM971957_mapped.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/output
2025-05-31T02:11:17,228   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:17,230   copying build/lib/resolwe_bio/tests/files/microarray_mapping/input/mapping.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:17,232   copying build/lib/resolwe_bio/tests/files/microarray_mapping/input/GSM971957_unmapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/input
2025-05-31T02:11:17,236   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2
2025-05-31T02:11:17,238   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,240   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,242   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,245   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,248   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,250   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,253   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,256   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,258   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,261   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_paired_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-05-31T02:11:17,264   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2/input
2025-05-31T02:11:17,265   copying build/lib/resolwe_bio/tests/files/test_hisat2/input/g.enome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/input
2025-05-31T02:11:17,268   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,271   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/markduplicate
2025-05-31T02:11:17,273   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:17,275   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:17,278   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:17,280   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:17,283   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-05-31T02:11:17,286   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_single_end.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,288   copying build/lib/resolwe_bio/tests/files/edgeR.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,291   copying build/lib/resolwe_bio/tests/files/hisat2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,294   copying build/lib/resolwe_bio/tests/files/cuffdiff.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,296   copying build/lib/resolwe_bio/tests/files/cutadapt mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,298   copying build/lib/resolwe_bio/tests/files/chr1_region.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,301   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq
2025-05-31T02:11:17,303   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:17,305   copying build/lib/resolwe_bio/tests/files/bamtofastq/output/output_reads_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:17,308   copying build/lib/resolwe_bio/tests/files/bamtofastq/output/output_reads_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/output
2025-05-31T02:11:17,312   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq/input
2025-05-31T02:11:17,313   copying build/lib/resolwe_bio/tests/files/bamtofastq/input/alignment.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/input
2025-05-31T02:11:17,318   copying build/lib/resolwe_bio/tests/files/geneset_cuffdiff_all.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,321   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba
2025-05-31T02:11:17,323   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:17,325   copying build/lib/resolwe_bio/tests/files/arriba/output/expected_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:17,328   copying build/lib/resolwe_bio/tests/files/arriba/output/expected_discarded_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/output
2025-05-31T02:11:17,332   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,334   copying build/lib/resolwe_bio/tests/files/arriba/input/aligned_samples.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,366   copying build/lib/resolwe_bio/tests/files/arriba/input/known_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,368   copying build/lib/resolwe_bio/tests/files/arriba/input/reads_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,376   copying build/lib/resolwe_bio/tests/files/arriba/input/minigenome.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,378   copying build/lib/resolwe_bio/tests/files/arriba/input/reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,386   copying build/lib/resolwe_bio/tests/files/arriba/input/aligned_samples_error.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,404   copying build/lib/resolwe_bio/tests/files/arriba/input/minigenome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-05-31T02:11:17,407   copying build/lib/resolwe_bio/tests/files/clustering_expressions_1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,409   copying build/lib/resolwe_bio/tests/files/deseq2_count_matrix_normalized.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,411   copying build/lib/resolwe_bio/tests/files/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,414   copying build/lib/resolwe_bio/tests/files/chr1_paired_R1_workflow_bbduk_star_htseq_preprocessed_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,417   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow
2025-05-31T02:11:17,419   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output
2025-05-31T02:11:17,421   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:17,423   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:17,425   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:17,427   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_alignment_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:17,430   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_chr2_17k_single.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-05-31T02:11:17,433   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,434   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_insert_size_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,436   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_alignment_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,439   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,441   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_chr2_17k_paired.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,443   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_rrbs_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-05-31T02:11:17,445   copying build/lib/resolwe_bio/tests/files/old_encoding1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,448   copying build/lib/resolwe_bio/tests/files/gff_to_gtf_annotation.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,450   copying build/lib/resolwe_bio/tests/files/cuffquant_2.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,453   copying build/lib/resolwe_bio/tests/files/control_macs2.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,455   copying build/lib/resolwe_bio/tests/files/chr1_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,457   copying build/lib/resolwe_bio/tests/files/bamplot.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,459   copying build/lib/resolwe_bio/tests/files/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,462   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam
2025-05-31T02:11:17,464   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:17,465   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:17,468   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:17,470   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:17,472   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_index.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-05-31T02:11:17,475   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:17,477   copying build/lib/resolwe_bio/tests/files/test_bam/input/alignment_name_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:17,479   copying build/lib/resolwe_bio/tests/files/test_bam/input/alignment_bam_upload_index.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/input
2025-05-31T02:11:17,482   copying build/lib/resolwe_bio/tests/files/prepeak_pe.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,492   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall
2025-05-31T02:11:17,494   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,496   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_transcripts.ctab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,498   copying build/lib/resolwe_bio/tests/files/corall/output/single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,501   copying build/lib/resolwe_bio/tests/files/corall/output/corall_workfow_expression_paired.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,504   copying build/lib/resolwe_bio/tests/files/corall/output/mate1_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,506   copying build/lib/resolwe_bio/tests/files/corall/output/dedup_single_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,508   copying build/lib/resolwe_bio/tests/files/corall/output/corall_workfow_expression_single.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,510   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_tpm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,512   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,515   copying build/lib/resolwe_bio/tests/files/corall/output/dedup_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,517   copying build/lib/resolwe_bio/tests/files/corall/output/mate2_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-05-31T02:11:17,520   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,521   copying build/lib/resolwe_bio/tests/files/corall/input/hs_annotation_chr2_1_45000.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,523   copying build/lib/resolwe_bio/tests/files/corall/input/corall_single.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,526   copying build/lib/resolwe_bio/tests/files/corall/input/corall_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,529   copying build/lib/resolwe_bio/tests/files/corall/input/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,531   copying build/lib/resolwe_bio/tests/files/corall/input/hs_genome_chr2_1_45000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,534   copying build/lib/resolwe_bio/tests/files/corall/input/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,539   copying build/lib/resolwe_bio/tests/files/corall/input/corall_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,541   copying build/lib/resolwe_bio/tests/files/corall/input/corall_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,543   copying build/lib/resolwe_bio/tests/files/corall/input/corall_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-05-31T02:11:17,545   copying build/lib/resolwe_bio/tests/files/chr1_region.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,556   copying build/lib/resolwe_bio/tests/files/old_encoding1_transformed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,559   copying build/lib/resolwe_bio/tests/files/deseq2_exp2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,561   copying build/lib/resolwe_bio/tests/files/deseq2_count_matrix.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,564   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr
2025-05-31T02:11:17,566   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,567   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,570   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_recalibration.table -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,574   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,577   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,579   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,582   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-05-31T02:11:17,585   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:17,587   copying build/lib/resolwe_bio/tests/files/bqsr/input/TP53.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:17,589   copying build/lib/resolwe_bio/tests/files/bqsr/input/dbsnp_STK11.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:17,592   copying build/lib/resolwe_bio/tests/files/bqsr/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:17,635   copying build/lib/resolwe_bio/tests/files/bqsr/input/dbsnp_TP53.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-05-31T02:11:17,637   copying build/lib/resolwe_bio/tests/files/geneset.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,639   copying build/lib/resolwe_bio/tests/files/bamplot_ alignment1.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,642   copying build/lib/resolwe_bio/tests/files/chr21_sorted_exons_strand.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,644   copying build/lib/resolwe_bio/tests/files/rw reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,646   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_paired_rw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,648   copying build/lib/resolwe_bio/tests/files/geneset.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,649   copying build/lib/resolwe_bio/tests/files/exp_6_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,651   copying build/lib/resolwe_bio/tests/files/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,653   copying build/lib/resolwe_bio/tests/files/s_1_1.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,656   copying build/lib/resolwe_bio/tests/files/exp_8_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,658   copying build/lib/resolwe_bio/tests/files/clustering_expressions_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,660   copying build/lib/resolwe_bio/tests/files/5-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,663   copying build/lib/resolwe_bio/tests/files/old_encoding.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,665   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts
2025-05-31T02:11:17,667   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,669   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_single_lanes_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,671   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/per_lane_rc.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,673   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,675   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,677   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,680   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/auto_detect_strand_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,681   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,683   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,685   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_paired_lanes_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,687   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,689   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,691   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,694   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_per_lane_rc.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,696   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc_with_rg.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,698   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-05-31T02:11:17,701   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,702   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,707   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/cuffquant_mapping.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,711   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/single_lanes.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,714   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,718   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/bam_with_read_group.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,722   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/paired_lanes.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,725   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,728   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/annotation_rsem.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,730   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,733   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/hg19_chr20_small_modified.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-05-31T02:11:17,736   copying build/lib/resolwe_bio/tests/files/cuffnorm_expression.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,738   copying build/lib/resolwe_bio/tests/files/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,740   copying build/lib/resolwe_bio/tests/files/5_prime_adapter.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,743   copying build/lib/resolwe_bio/tests/files/3-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,746   copying build/lib/resolwe_bio/tests/files/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,748   copying build/lib/resolwe_bio/tests/files/chr21_sorted_genes.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,750   copying build/lib/resolwe_bio/tests/files/rose2_enhancer_table.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,753   copying build/lib/resolwe_bio/tests/files/adapters.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,756   copying build/lib/resolwe_bio/tests/files/geneset_deseq2_up.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,758   copying build/lib/resolwe_bio/tests/files/exp_5_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,761   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align
2025-05-31T02:11:17,764   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:17,766   copying build/lib/resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:17,768   copying build/lib/resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/output
2025-05-31T02:11:17,771   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align/input
2025-05-31T02:11:17,773   copying build/lib/resolwe_bio/tests/files/test_subsample_align/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/input
2025-05-31T02:11:17,776   copying build/lib/resolwe_bio/tests/files/deseq2_exp1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,778   copying build/lib/resolwe_bio/tests/files/cufflinks_transcripts.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,780   copying build/lib/resolwe_bio/tests/files/log_box_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,783   copying build/lib/resolwe_bio/tests/files/regtools_SJ_from_bam.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,785   copying build/lib/resolwe_bio/tests/files/exp_3_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,787   copying build/lib/resolwe_bio/tests/files/geneset_2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,790   copying build/lib/resolwe_bio/tests/files/samtools_idxstats_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,794   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/merge-fastq
2025-05-31T02:11:17,796   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/merge-fastq/output
2025-05-31T02:11:17,798   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/fw_reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-05-31T02:11:17,801   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/rw_reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-05-31T02:11:17,804   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-05-31T02:11:17,807   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore
2025-05-31T02:11:17,809   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:17,811   copying build/lib/resolwe_bio/tests/files/trimgalore/outputs/mate1_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:17,814   copying build/lib/resolwe_bio/tests/files/trimgalore/outputs/mate2_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/outputs
2025-05-31T02:11:17,817   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore/inputs
2025-05-31T02:11:17,818   copying build/lib/resolwe_bio/tests/files/trimgalore/inputs/illumina_universal_adapters.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/inputs
2025-05-31T02:11:17,821   copying build/lib/resolwe_bio/tests/files/s_1_2.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,824   copying build/lib/resolwe_bio/tests/files/hs sim_reads1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,826   copying build/lib/resolwe_bio/tests/files/annotation dicty.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,829   copying build/lib/resolwe_bio/tests/files/promoters_mm10_chr17_subregion.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,831   copying build/lib/resolwe_bio/tests/files/nanostring_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,835   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseqc
2025-05-31T02:11:17,837   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:17,839   copying build/lib/resolwe_bio/tests/files/rnaseqc/output/chr1_region.bam.metrics_ENSEMBL.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:17,842   copying build/lib/resolwe_bio/tests/files/rnaseqc/output/chr1_region_ucsc.bam.metrics_UCSC.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseqc/output
2025-05-31T02:11:17,845   copying build/lib/resolwe_bio/tests/files/chr1_region.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,848   copying build/lib/resolwe_bio/tests/files/my.strange.genome name$.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,850   copying build/lib/resolwe_bio/tests/files/atac_seq_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,854   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/metadata_upload
2025-05-31T02:11:17,856   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,858   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/empty.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,860   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/mixed_case_sufix.TsV -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,863   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/iris_legacy.TAB -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,866   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,868   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.xlsx -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,871   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable_one_to_many.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,874   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/upper_case_sufix.TSV -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-05-31T02:11:17,876   copying build/lib/resolwe_bio/tests/files/hs_gatk_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,879   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray
2025-05-31T02:11:17,881   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:17,883   copying build/lib/resolwe_bio/tests/files/upload_microarray/output/GSM971958_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:17,886   copying build/lib/resolwe_bio/tests/files/upload_microarray/output/GSM971958.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/output
2025-05-31T02:11:17,889   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:17,890   copying build/lib/resolwe_bio/tests/files/upload_microarray/input/GSM971957_unmapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:17,893   copying build/lib/resolwe_bio/tests/files/upload_microarray/input/GSM971957_mapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/input
2025-05-31T02:11:17,895   copying build/lib/resolwe_bio/tests/files/macs14_peaks.bb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,898   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes
2025-05-31T02:11:17,900   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes/output
2025-05-31T02:11:17,902   copying build/lib/resolwe_bio/tests/files/workflow_wes/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/output
2025-05-31T02:11:17,905   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:17,907   copying build/lib/resolwe_bio/tests/files/workflow_wes/input/TP53_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:17,911   copying build/lib/resolwe_bio/tests/files/workflow_wes/input/TP53_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/input
2025-05-31T02:11:17,914   copying build/lib/resolwe_bio/tests/files/pca_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,917   copying build/lib/resolwe_bio/tests/files/raw_cuffdiff.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,919   copying build/lib/resolwe_bio/tests/files/reads_fpkm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,921   copying build/lib/resolwe_bio/tests/files/geneset_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,924   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2
2025-05-31T02:11:17,927   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:17,928   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs/de_data_deseq.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:17,931   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs/count_matrix.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-05-31T02:11:17,934   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:17,936   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_3_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:17,939   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_4_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:17,941   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_2_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:17,944   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_1_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-05-31T02:11:17,946   copying build/lib/resolwe_bio/tests/files/old_encoding_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,949   copying build/lib/resolwe_bio/tests/files/Test_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,951   copying build/lib/resolwe_bio/tests/files/old_encoding_transformed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,953   copying build/lib/resolwe_bio/tests/files/geneset_edgeR_up.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,956   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement
2025-05-31T02:11:17,958   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement/output
2025-05-31T02:11:17,960   copying build/lib/resolwe_bio/tests/files/variant_refinement/output/variants.refined.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/output
2025-05-31T02:11:17,964   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:17,965   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/snp.recalibrated_chrX_28000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:17,969   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/chrX_28000.renamed.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:17,972   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/chrX_1_28000.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-05-31T02:11:17,975   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_single.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,977   copying build/lib/resolwe_bio/tests/files/prepeak_se.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,993   copying build/lib/resolwe_bio/tests/files/regtools_novel_SJ.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,996   copying build/lib/resolwe_bio/tests/files/exp3_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:17,999   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation
2025-05-31T02:11:18,001   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation/output
2025-05-31T02:11:18,004   copying build/lib/resolwe_bio/tests/files/variant_annotation/output/annotated_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/output
2025-05-31T02:11:18,008   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,010   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/dbsnp_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,013   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/canonical_transcripts_ens109.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,020   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/clinvar_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,022   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/dbsnp.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,025   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/clinvar.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-05-31T02:11:18,027   copying build/lib/resolwe_bio/tests/files/chr1_region_salmon.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,029   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp
2025-05-31T02:11:18,031   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:18,033   copying build/lib/resolwe_bio/tests/files/diff_exp/output/diff_exp_check_types.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:18,035   copying build/lib/resolwe_bio/tests/files/diff_exp/output/deseq2_volcano_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/output
2025-05-31T02:11:18,037   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:18,039   copying build/lib/resolwe_bio/tests/files/diff_exp/input/deseq2_output.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:18,041   copying build/lib/resolwe_bio/tests/files/diff_exp/input/deseq2_bad_output.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:18,043   copying build/lib/resolwe_bio/tests/files/diff_exp/input/diff_exp_check_geneid_type.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-05-31T02:11:18,045   copying build/lib/resolwe_bio/tests/files/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,047   copying build/lib/resolwe_bio/tests/files/hg19_chr20_small.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,049   copying build/lib/resolwe_bio/tests/files/SRR2124780_1 1k.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,053   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_paired_fw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,056   copying build/lib/resolwe_bio/tests/files/bt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,060   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs_workflow
2025-05-31T02:11:18,062   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs_workflow/output
2025-05-31T02:11:18,063   copying build/lib/resolwe_bio/tests/files/wgs_workflow/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs_workflow/output
2025-05-31T02:11:18,066   copying build/lib/resolwe_bio/tests/files/genome_rsem.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,068   copying build/lib/resolwe_bio/tests/files/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,071   copying build/lib/resolwe_bio/tests/files/SRR2141558_chr1_20k.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,075   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2
2025-05-31T02:11:18,077   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,078   copying build/lib/resolwe_bio/tests/files/macs2/output/batch_case_postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,081   copying build/lib/resolwe_bio/tests/files/macs2/output/case_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,083   copying build/lib/resolwe_bio/tests/files/macs2/output/batch_case_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,085   copying build/lib/resolwe_bio/tests/files/macs2/output/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,304   copying build/lib/resolwe_bio/tests/files/macs2/output/rose2_enhancer_table.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,307   copying build/lib/resolwe_bio/tests/files/macs2/output/control_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-05-31T02:11:18,311   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,313   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675975_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,353   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675973_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,370   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675976_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,390   copying build/lib/resolwe_bio/tests/files/macs2/input/paired_end_discodeum.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,392   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675974_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,412   copying build/lib/resolwe_bio/tests/files/macs2/input/promoter_regions.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-05-31T02:11:18,414   copying build/lib/resolwe_bio/tests/files/de_file_cuffdiff.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,416   copying build/lib/resolwe_bio/tests/files/Hs GRCh38_86 upload.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,418   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/annotation_bedpe
2025-05-31T02:11:18,420   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/annotation_bedpe/input
2025-05-31T02:11:18,421   copying build/lib/resolwe_bio/tests/files/annotation_bedpe/input/alk.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/annotation_bedpe/input
2025-05-31T02:11:18,424   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired_wo_adapter_trim.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,426   copying build/lib/resolwe_bio/tests/files/20Hr.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,428   copying build/lib/resolwe_bio/tests/files/prepeak_pe_tn5.tagAlign.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,432   copying build/lib/resolwe_bio/tests/files/cuffnorm_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,435   copying build/lib/resolwe_bio/tests/files/exp_6_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,437   copying build/lib/resolwe_bio/tests/files/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,440   copying build/lib/resolwe_bio/tests/files/chr1_region_ucsc.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,444   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk
2025-05-31T02:11:18,445   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,447   copying build/lib/resolwe_bio/tests/files/bbduk/output/fw_reads_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,449   copying build/lib/resolwe_bio/tests/files/bbduk/output/rRNA_forw_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,451   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_rv_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,453   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_fw_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,456   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_test_reads_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-05-31T02:11:18,458   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,459   copying build/lib/resolwe_bio/tests/files/bbduk/input/bbduk_test_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,462   copying build/lib/resolwe_bio/tests/files/bbduk/input/bbduk_adapters.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,465   copying build/lib/resolwe_bio/tests/files/bbduk/input/barcodes.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,467   copying build/lib/resolwe_bio/tests/files/bbduk/input/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,469   copying build/lib/resolwe_bio/tests/files/bbduk/input/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-05-31T02:11:18,472   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools
2025-05-31T02:11:18,474   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,476   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage_mean.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,478   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,480   copying build/lib/resolwe_bio/tests/files/samtools/outputs/coverage_multi.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,482   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,484   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,486   copying build/lib/resolwe_bio/tests/files/samtools/outputs/coverage_single.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,489   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_depth.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,491   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_counts.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,493   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,495   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_bed.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,497   copying build/lib/resolwe_bio/tests/files/samtools/outputs/bedfile.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-05-31T02:11:18,500   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,501   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,504   copying build/lib/resolwe_bio/tests/files/samtools/inputs/regions_bed.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,506   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,511   copying build/lib/resolwe_bio/tests/files/samtools/inputs/regions.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,514   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,518   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-05-31T02:11:18,521   copying build/lib/resolwe_bio/tests/files/macs14_case.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,524   copying build/lib/resolwe_bio/tests/files/Hs GRCh38_86 upload_sorted.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,527   copying build/lib/resolwe_bio/tests/files/prepeak_pe_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,529   copying build/lib/resolwe_bio/tests/files/exp_4_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,531   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,534   copying build/lib/resolwe_bio/tests/files/reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,537   copying build/lib/resolwe_bio/tests/files/regtools.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,540   copying build/lib/resolwe_bio/tests/files/old_encoding1_transformed_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,543   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling
2025-05-31T02:11:18,545   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,546   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,549   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_geneset.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,552   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1_markduplicates_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,554   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_bam.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,557   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-05-31T02:11:18,561   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,562   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,565   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/dbsnp-hg38.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,568   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,578   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,580   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/hg38.intervals.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-05-31T02:11:18,582   copying build/lib/resolwe_bio/tests/files/exp_2_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,585   copying build/lib/resolwe_bio/tests/files/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,587   copying build/lib/resolwe_bio/tests/files/annotation_rsem.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,590   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper
2025-05-31T02:11:18,592   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:18,593   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:18,596   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:18,601   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-05-31T02:11:18,604   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:18,605   copying build/lib/resolwe_bio/tests/files/bamclipper/input/TP53.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:18,608   copying build/lib/resolwe_bio/tests/files/bamclipper/input/TP53.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/input
2025-05-31T02:11:18,612   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering
2025-05-31T02:11:18,614   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:18,616   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_euclidean.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:18,618   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:18,620   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-05-31T02:11:18,623   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,624   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,627   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,629   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,631   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,633   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2_partial_match.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,636   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_different_genes.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,638   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_constant_8h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,640   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,642   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-05-31T02:11:18,644   copying build/lib/resolwe_bio/tests/files/bt2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,648   copying build/lib/resolwe_bio/tests/files/s_1.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,650   copying build/lib/resolwe_bio/tests/files/reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,653   copying build/lib/resolwe_bio/tests/files/cuffnorm_all_fpkm_means.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,655   copying build/lib/resolwe_bio/tests/files/promoters_chr21_subregion.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,741   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads
2025-05-31T02:11:18,744   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads/output
2025-05-31T02:11:18,748   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/output/split_cigar_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/output
2025-05-31T02:11:18,753   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:18,755   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/input/chr1_1-15000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:18,759   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/input/chr1_500.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/input
2025-05-31T02:11:18,762   copying build/lib/resolwe_bio/tests/files/dbsnp_138.b37.chr2_small.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,766   copying build/lib/resolwe_bio/tests/files/bad.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,769   copying build/lib/resolwe_bio/tests/files/macs14_peaks.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-05-31T02:11:18,772   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table
2025-05-31T02:11:18,774   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table/output
2025-05-31T02:11:18,776   copying build/lib/resolwe_bio/tests/files/variants_to_table/output/variants_to_table.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variants_to_table/output
2025-05-31T02:11:18,779   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table/input
2025-05-31T02:11:18,781   copying build/lib/resolwe_bio/tests/files/variants_to_table/input/refined_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variants_to_table/input
2025-05-31T02:11:18,785   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/unit
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2025-05-31T02:11:18,791   copying build/lib/resolwe_bio/tests/unit/test_expression_filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/unit
2025-05-31T02:11:18,794   copying build/lib/resolwe_bio/tests/unit/test_api.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/unit
2025-05-31T02:11:18,797   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/workflows
2025-05-31T02:11:18,799   copying build/lib/resolwe_bio/tests/workflows/test_atac_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,801   copying build/lib/resolwe_bio/tests/workflows/test_geo_import.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,804   copying build/lib/resolwe_bio/tests/workflows/test_rna_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,809   copying build/lib/resolwe_bio/tests/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,812   copying build/lib/resolwe_bio/tests/workflows/test_mirna.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,815   copying build/lib/resolwe_bio/tests/workflows/test_fusion_calling_arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
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2025-05-31T02:11:18,821   copying build/lib/resolwe_bio/tests/workflows/test_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,825   copying build/lib/resolwe_bio/tests/workflows/test_wes.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:18,829   copying build/lib/resolwe_bio/tests/workflows/test_wgbs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:19,046   copying build/lib/resolwe_bio/tests/workflows/test_wgs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-05-31T02:11:19,051   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/processes
2025-05-31T02:11:19,054   copying build/lib/resolwe_bio/tests/processes/test_plots.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,058   copying build/lib/resolwe_bio/tests/processes/test_enrichment.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,062   copying build/lib/resolwe_bio/tests/processes/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,066   copying build/lib/resolwe_bio/tests/processes/test_expression_aggregator.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,069   copying build/lib/resolwe_bio/tests/processes/test_support_processors.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,073   copying build/lib/resolwe_bio/tests/processes/test_variant_calling.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,076   copying build/lib/resolwe_bio/tests/processes/test_upload.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,079   copying build/lib/resolwe_bio/tests/processes/test_diff_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,082   copying build/lib/resolwe_bio/tests/processes/test_reads_filtering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,086   copying build/lib/resolwe_bio/tests/processes/test_import.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,089   copying build/lib/resolwe_bio/tests/processes/test_microarray.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,092   copying build/lib/resolwe_bio/tests/processes/test_junctions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,094   copying build/lib/resolwe_bio/tests/processes/test_processor.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,096   copying build/lib/resolwe_bio/tests/processes/test_annotation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,098   copying build/lib/resolwe_bio/tests/processes/test_alignment.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,101   copying build/lib/resolwe_bio/tests/processes/test_ml_ready.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,104   copying build/lib/resolwe_bio/tests/processes/test_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,106   copying build/lib/resolwe_bio/tests/processes/test_clustering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,110   copying build/lib/resolwe_bio/tests/processes/test_arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,112   copying build/lib/resolwe_bio/tests/processes/test_files_to_reads.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,115   copying build/lib/resolwe_bio/tests/processes/test_metadata_upload.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,117   copying build/lib/resolwe_bio/tests/processes/test_chipseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,120   copying build/lib/resolwe_bio/tests/processes/test_pca.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,123   copying build/lib/resolwe_bio/tests/processes/test_wgbs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,126   copying build/lib/resolwe_bio/tests/processes/test_wgs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,128   copying build/lib/resolwe_bio/tests/processes/test_samtools.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-05-31T02:11:19,132   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb
2025-05-31T02:11:19,134   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/tests
2025-05-31T02:11:19,135   copying build/lib/resolwe_bio/kb/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-05-31T02:11:19,137   copying build/lib/resolwe_bio/kb/tests/test_feature.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-05-31T02:11:19,139   copying build/lib/resolwe_bio/kb/tests/test_import_kb.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-05-31T02:11:19,141   copying build/lib/resolwe_bio/kb/tests/test_mapping.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-05-31T02:11:19,144   copying build/lib/resolwe_bio/kb/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,146   copying build/lib/resolwe_bio/kb/backends.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,148   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management
2025-05-31T02:11:19,149   copying build/lib/resolwe_bio/kb/management/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management
2025-05-31T02:11:19,152   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands
2025-05-31T02:11:19,154   copying build/lib/resolwe_bio/kb/management/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-05-31T02:11:19,156   copying build/lib/resolwe_bio/kb/management/commands/insert_mappings.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-05-31T02:11:19,158   copying build/lib/resolwe_bio/kb/management/commands/utils.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-05-31T02:11:19,160   copying build/lib/resolwe_bio/kb/management/commands/insert_features.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-05-31T02:11:19,163   copying build/lib/resolwe_bio/kb/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,165   copying build/lib/resolwe_bio/kb/views.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,167   copying build/lib/resolwe_bio/kb/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,169   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations
2025-05-31T02:11:19,170   copying build/lib/resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,173   copying build/lib/resolwe_bio/kb/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,174   copying build/lib/resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,176   copying build/lib/resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,178   copying build/lib/resolwe_bio/kb/migrations/triggers_feature.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,180   copying build/lib/resolwe_bio/kb/migrations/0009_full_text_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,183   copying build/lib/resolwe_bio/kb/migrations/0005_species.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,185   copying build/lib/resolwe_bio/kb/migrations/triggers_feature_2.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,187   copying build/lib/resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,189   copying build/lib/resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,191   copying build/lib/resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,193   copying build/lib/resolwe_bio/kb/migrations/0014_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,195   copying build/lib/resolwe_bio/kb/migrations/0001_initial.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,197   copying build/lib/resolwe_bio/kb/migrations/0003_add_map_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,199   copying build/lib/resolwe_bio/kb/migrations/0013_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,201   copying build/lib/resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,203   copying build/lib/resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,206   copying build/lib/resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,209   copying build/lib/resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-05-31T02:11:19,211   copying build/lib/resolwe_bio/kb/listener_plugin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,213   copying build/lib/resolwe_bio/kb/pagination.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,215   copying build/lib/resolwe_bio/kb/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,218   copying build/lib/resolwe_bio/kb/admin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,220   copying build/lib/resolwe_bio/kb/serializers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-05-31T02:11:19,223   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tools
2025-05-31T02:11:19,224   copying build/lib/resolwe_bio/tools/parse_diffexp.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,226   copying build/lib/resolwe_bio/tools/tximport_summarize.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,228   copying build/lib/resolwe_bio/tools/extract_umi.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,230   copying build/lib/resolwe_bio/tools/parse_cuffnorm.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,233   copying build/lib/resolwe_bio/tools/postprocess_snpeff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,235   copying build/lib/resolwe_bio/tools/cufflinks_sample_groups.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,237   copying build/lib/resolwe_bio/tools/expressionmerge_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,240   copying build/lib/resolwe_bio/tools/bamliquidator_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,242   copying build/lib/resolwe_bio/tools/mergebowtie2stats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,245   copying build/lib/resolwe_bio/tools/mappability.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,247   copying build/lib/resolwe_bio/tools/plot_enhancers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,249   copying build/lib/resolwe_bio/tools/novel_splice_junctions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,251   copying build/lib/resolwe_bio/tools/mergebowtie2stats_paired.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,253   copying build/lib/resolwe_bio/tools/deseq.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,255   copying build/lib/resolwe_bio/tools/utils.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,257   copying build/lib/resolwe_bio/tools/parse_encoding_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,259   copying build/lib/resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,261   copying build/lib/resolwe_bio/tools/expression2storage.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,263   copying build/lib/resolwe_bio/tools/gff3_to_gtf.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,265   copying build/lib/resolwe_bio/tools/run_edger.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,268   copying build/lib/resolwe_bio/tools/cuffnorm_group_labels.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,270   copying build/lib/resolwe_bio/tools/merge_chipqc_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,272   copying build/lib/resolwe_bio/tools/convert_DE_excel_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,274   copying build/lib/resolwe_bio/tools/parse_library_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,276   copying build/lib/resolwe_bio/tools/mergebowtiestats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,278   copying build/lib/resolwe_bio/tools/sesame.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,280   copying build/lib/resolwe_bio/tools/expressionmerge.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,282   copying build/lib/resolwe_bio/tools/validate_fastq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,285   copying build/lib/resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,287   copying build/lib/resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,293   copying build/lib/resolwe_bio/tools/unique_sample_names.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,295   copying build/lib/resolwe_bio/tools/create_gene_sets.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,298   copying build/lib/resolwe_bio/tools/xexpression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,301   copying build/lib/resolwe_bio/tools/detect_strandedness.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,303   copying build/lib/resolwe_bio/tools/spikeins_report.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,306   copying build/lib/resolwe_bio/tools/star_sj_to_bed12.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,308   copying build/lib/resolwe_bio/tools/spikein_pairwise.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,311   copying build/lib/resolwe_bio/tools/fastqc.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,313   copying build/lib/resolwe_bio/tools/make_igv_session_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-05-31T02:11:19,316   creating build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters
2025-05-31T02:11:19,317   copying build/lib/resolwe_bio/expression_filters/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-05-31T02:11:19,319   copying build/lib/resolwe_bio/expression_filters/sample.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-05-31T02:11:19,321   copying build/lib/resolwe_bio/expression_filters/relation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-05-31T02:11:19,324   copying build/lib/resolwe_bio/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-05-31T02:11:19,326   copying build/lib/resolwe_bio/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-05-31T02:11:19,329   copying build/lib/resolwe_bio/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-05-31T02:11:19,332   creating build/bdist.linux-armv7l/wheel/resolwe_bio/migrations
2025-05-31T02:11:19,333   copying build/lib/resolwe_bio/migrations/0003_sample_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,335   copying build/lib/resolwe_bio/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,337   copying build/lib/resolwe_bio/migrations/0002_metadata_table_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,339   copying build/lib/resolwe_bio/migrations/0006_update_sql_methods.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,342   copying build/lib/resolwe_bio/migrations/0004_merge_fastq_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,344   copying build/lib/resolwe_bio/migrations/resolwe_indexes_3.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,346   copying build/lib/resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,348   copying build/lib/resolwe_bio/migrations/resolwe_indexes_2.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,350   copying build/lib/resolwe_bio/migrations/resolwe_indexes.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,352   copying build/lib/resolwe_bio/migrations/0005_remove_descriptor_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,355   copying build/lib/resolwe_bio/migrations/remove_resolwe_indexes.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-05-31T02:11:19,357   creating build/bdist.linux-armv7l/wheel/resolwe_bio/utils
2025-05-31T02:11:19,358   copying build/lib/resolwe_bio/utils/test.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-05-31T02:11:19,361   copying build/lib/resolwe_bio/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-05-31T02:11:19,363   copying build/lib/resolwe_bio/utils/filter.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-05-31T02:11:19,365   copying build/lib/resolwe_bio/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-05-31T02:11:19,368   creating build/bdist.linux-armv7l/wheel/resolwe_bio/fixtures
2025-05-31T02:11:19,369   copying build/lib/resolwe_bio/fixtures/relationtypes.yaml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/fixtures
2025-05-31T02:11:19,371   copying build/lib/resolwe_bio/extensions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-05-31T02:11:19,374   creating build/bdist.linux-armv7l/wheel/resolwe_bio/process
2025-05-31T02:11:19,375   copying build/lib/resolwe_bio/process/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-05-31T02:11:19,377   copying build/lib/resolwe_bio/process/runtime.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-05-31T02:11:19,379   copying build/lib/resolwe_bio/process/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-05-31T02:11:19,382   creating build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors
2025-05-31T02:11:19,383   copying build/lib/resolwe_bio/descriptors/geneset.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-05-31T02:11:19,385   copying build/lib/resolwe_bio/descriptors/reads.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-05-31T02:11:19,388   copying build/lib/resolwe_bio/descriptors/dicty_time_series.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-05-31T02:11:19,390   copying build/lib/resolwe_bio/descriptors/diffexp.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-05-31T02:11:19,393   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes
2025-05-31T02:11:19,395   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression
2025-05-31T02:11:19,396   copying build/lib/resolwe_bio/processes/differential_expression/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-05-31T02:11:19,398   copying build/lib/resolwe_bio/processes/differential_expression/edgeR.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-05-31T02:11:19,401   copying build/lib/resolwe_bio/processes/differential_expression/deseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-05-31T02:11:19,404   copying build/lib/resolwe_bio/processes/differential_expression/cuffdiff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-05-31T02:11:19,407   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/go_enrichment
2025-05-31T02:11:19,408   copying build/lib/resolwe_bio/processes/go_enrichment/go.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/go_enrichment
2025-05-31T02:11:19,412   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression
2025-05-31T02:11:19,413   copying build/lib/resolwe_bio/processes/expression/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,416   copying build/lib/resolwe_bio/processes/expression/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,418   copying build/lib/resolwe_bio/processes/expression/cuffnorm.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,421   copying build/lib/resolwe_bio/processes/expression/expression_aggregator.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,424   copying build/lib/resolwe_bio/processes/expression/mappability.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,426   copying build/lib/resolwe_bio/processes/expression/salmon_index.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,428   copying build/lib/resolwe_bio/processes/expression/merge_expressions.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,430   copying build/lib/resolwe_bio/processes/expression/dicty_bcm.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,432   copying build/lib/resolwe_bio/processes/expression/cufflinks.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,434   copying build/lib/resolwe_bio/processes/expression/star_quantification.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,437   copying build/lib/resolwe_bio/processes/expression/featureCounts.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,440   copying build/lib/resolwe_bio/processes/expression/salmon.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-05-31T02:11:19,445   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/fusion_calling
2025-05-31T02:11:19,446   copying build/lib/resolwe_bio/processes/fusion_calling/arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/fusion_calling
2025-05-31T02:11:19,449   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,450   copying build/lib/resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,453   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,456   copying build/lib/resolwe_bio/processes/reads_processing/bamclipper.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,458   copying build/lib/resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,460   copying build/lib/resolwe_bio/processes/reads_processing/split_ncigar.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,463   copying build/lib/resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,466   copying build/lib/resolwe_bio/processes/reads_processing/markduplicates.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,468   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,471   copying build/lib/resolwe_bio/processes/reads_processing/trimgalore.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,474   copying build/lib/resolwe_bio/processes/reads_processing/bbduk.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,477   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,480   copying build/lib/resolwe_bio/processes/reads_processing/bqsr.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,483   copying build/lib/resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,486   copying build/lib/resolwe_bio/processes/reads_processing/xengsort.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-05-31T02:11:19,490   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,491   copying build/lib/resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,494   copying build/lib/resolwe_bio/processes/chip_seq/macs2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,497   copying build/lib/resolwe_bio/processes/chip_seq/chipqc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,500   copying build/lib/resolwe_bio/processes/chip_seq/rose2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,503   copying build/lib/resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,506   copying build/lib/resolwe_bio/processes/chip_seq/macs14.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,508   copying build/lib/resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-05-31T02:11:19,514   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,515   copying build/lib/resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,518   copying build/lib/resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,521   copying build/lib/resolwe_bio/processes/variant_calling/vc_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,524   copying build/lib/resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,527   copying build/lib/resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,530   copying build/lib/resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,533   copying build/lib/resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,536   copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,539   copying build/lib/resolwe_bio/processes/variant_calling/snpeff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,542   copying build/lib/resolwe_bio/processes/variant_calling/gatk4.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,544   copying build/lib/resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,547   copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,550   copying build/lib/resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,553   copying build/lib/resolwe_bio/processes/variant_calling/variants_to_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,556   copying build/lib/resolwe_bio/processes/variant_calling/vqsr.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-05-31T02:11:19,559   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/plots
2025-05-31T02:11:19,560   copying build/lib/resolwe_bio/processes/plots/bamplot.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/plots
2025-05-31T02:11:19,564   copying build/lib/resolwe_bio/processes/plots/bamliquidator.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/plots
2025-05-31T02:11:19,567   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering
2025-05-31T02:11:19,569   copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-05-31T02:11:19,573   copying build/lib/resolwe_bio/processes/clustering/pca.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-05-31T02:11:19,576   copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-05-31T02:11:19,579   copying build/lib/resolwe_bio/processes/clustering/find_similar.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-05-31T02:11:19,582   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS
2025-05-31T02:11:19,583   copying build/lib/resolwe_bio/processes/WGBS/hmr.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-05-31T02:11:19,586   copying build/lib/resolwe_bio/processes/WGBS/walt.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-05-31T02:11:19,589   copying build/lib/resolwe_bio/processes/WGBS/walt_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-05-31T02:11:19,591   copying build/lib/resolwe_bio/processes/WGBS/bsrate.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-05-31T02:11:19,594   copying build/lib/resolwe_bio/processes/WGBS/methcounts.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-05-31T02:11:19,597   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows
2025-05-31T02:11:19,598   copying build/lib/resolwe_bio/processes/workflows/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,601   copying build/lib/resolwe_bio/processes/workflows/geo_import.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,604   copying build/lib/resolwe_bio/processes/workflows/chip_seq.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,608   copying build/lib/resolwe_bio/processes/workflows/wes.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,611   copying build/lib/resolwe_bio/processes/workflows/atac_seq.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,614   copying build/lib/resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,617   copying build/lib/resolwe_bio/processes/workflows/quantseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,620   copying build/lib/resolwe_bio/processes/workflows/corall.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,623   copying build/lib/resolwe_bio/processes/workflows/bbduk_star.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,626   copying build/lib/resolwe_bio/processes/workflows/mirna.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,629   copying build/lib/resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,632   copying build/lib/resolwe_bio/processes/workflows/cut_and_run.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,637   copying build/lib/resolwe_bio/processes/workflows/wgbs.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,641   copying build/lib/resolwe_bio/processes/workflows/wgs.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,644   copying build/lib/resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,648   copying build/lib/resolwe_bio/processes/workflows/wgs_gvcf.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,651   copying build/lib/resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,654   copying build/lib/resolwe_bio/processes/workflows/chemut.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-05-31T02:11:19,657   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment
2025-05-31T02:11:19,658   copying build/lib/resolwe_bio/processes/alignment/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,660   copying build/lib/resolwe_bio/processes/alignment/bowtie_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,662   copying build/lib/resolwe_bio/processes/alignment/bwamem2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,664   copying build/lib/resolwe_bio/processes/alignment/bwa.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,668   copying build/lib/resolwe_bio/processes/alignment/star.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,671   copying build/lib/resolwe_bio/processes/alignment/bowtie.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,674   copying build/lib/resolwe_bio/processes/alignment/bwamem2.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,677   copying build/lib/resolwe_bio/processes/alignment/star_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,679   copying build/lib/resolwe_bio/processes/alignment/bwa_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,681   copying build/lib/resolwe_bio/processes/alignment/hisat2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,684   copying build/lib/resolwe_bio/processes/alignment/bowtie2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,686   copying build/lib/resolwe_bio/processes/alignment/hisat2.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-05-31T02:11:19,690   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray
2025-05-31T02:11:19,691   copying build/lib/resolwe_bio/processes/microarray/methylation_arrays.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-05-31T02:11:19,694   copying build/lib/resolwe_bio/processes/microarray/microarray_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-05-31T02:11:19,696   copying build/lib/resolwe_bio/processes/microarray/map_probes.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-05-31T02:11:19,700   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/junctions
2025-05-31T02:11:19,701   copying build/lib/resolwe_bio/processes/junctions/regtools.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/junctions
2025-05-31T02:11:19,705   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/annotation
2025-05-31T02:11:19,706   copying build/lib/resolwe_bio/processes/annotation/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/annotation
2025-05-31T02:11:19,708   copying build/lib/resolwe_bio/processes/annotation/variant_annotation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/annotation
2025-05-31T02:11:19,712   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors
2025-05-31T02:11:19,713   copying build/lib/resolwe_bio/processes/support_processors/archive.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,716   copying build/lib/resolwe_bio/processes/support_processors/spikeins_qc.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,718   copying build/lib/resolwe_bio/processes/support_processors/mutations_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,721   copying build/lib/resolwe_bio/processes/support_processors/qorts_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,723   copying build/lib/resolwe_bio/processes/support_processors/insert_size.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,726   copying build/lib/resolwe_bio/processes/support_processors/wgs_metrics.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,729   copying build/lib/resolwe_bio/processes/support_processors/seqtk.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,731   copying build/lib/resolwe_bio/processes/support_processors/rnaseqc_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,734   copying build/lib/resolwe_bio/processes/support_processors/merge_samples.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,736   copying build/lib/resolwe_bio/processes/support_processors/umi_tools.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,738   copying build/lib/resolwe_bio/processes/support_processors/gff_to_gtf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,740   copying build/lib/resolwe_bio/processes/support_processors/library_strandedness.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,743   copying build/lib/resolwe_bio/processes/support_processors/bam_conversion.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,745   copying build/lib/resolwe_bio/processes/support_processors/multiqc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,748   copying build/lib/resolwe_bio/processes/support_processors/gtf_to_bed.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,751   copying build/lib/resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,753   copying build/lib/resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,756   copying build/lib/resolwe_bio/processes/support_processors/alignment_summary.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-05-31T02:11:19,759   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,760   copying build/lib/resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,762   copying build/lib/resolwe_bio/processes/unit_tests/test_basic_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,766   copying build/lib/resolwe_bio/processes/unit_tests/test_list.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,768   copying build/lib/resolwe_bio/processes/unit_tests/test_sleep_progress.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,770   copying build/lib/resolwe_bio/processes/unit_tests/test_disabled_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-05-31T02:11:19,773   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/samtools
2025-05-31T02:11:19,774   copying build/lib/resolwe_bio/processes/samtools/samtools_bedcov.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-05-31T02:11:19,776   copying build/lib/resolwe_bio/processes/samtools/samtools_view.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-05-31T02:11:19,779   copying build/lib/resolwe_bio/processes/samtools/samtools_mpileup.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-05-31T02:11:19,782   copying build/lib/resolwe_bio/processes/samtools/samtools_depth.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-05-31T02:11:19,785   copying build/lib/resolwe_bio/processes/samtools/samtools_coverage.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-05-31T02:11:19,789   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data
2025-05-31T02:11:19,790   copying build/lib/resolwe_bio/processes/import_data/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,793   copying build/lib/resolwe_bio/processes/import_data/ml_ready_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,795   copying build/lib/resolwe_bio/processes/import_data/sra_file.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,798   copying build/lib/resolwe_bio/processes/import_data/go_gaf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,800   copying build/lib/resolwe_bio/processes/import_data/annotation.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,803   copying build/lib/resolwe_bio/processes/import_data/basespace.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,805   copying build/lib/resolwe_bio/processes/import_data/mappability_tab.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,807   copying build/lib/resolwe_bio/processes/import_data/seq_reads.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,811   copying build/lib/resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,813   copying build/lib/resolwe_bio/processes/import_data/differential_exp.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,815   copying build/lib/resolwe_bio/processes/import_data/variants_vcf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,817   copying build/lib/resolwe_bio/processes/import_data/nucleotide_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,820   copying build/lib/resolwe_bio/processes/import_data/metadata.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,823   copying build/lib/resolwe_bio/processes/import_data/geneset.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,825   copying build/lib/resolwe_bio/processes/import_data/methylation_array_idat.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,828   copying build/lib/resolwe_bio/processes/import_data/expressions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,830   copying build/lib/resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,834   copying build/lib/resolwe_bio/processes/import_data/annotation_bedpe.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,836   copying build/lib/resolwe_bio/processes/import_data/bam.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,839   copying build/lib/resolwe_bio/processes/import_data/go_obo.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,841   copying build/lib/resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,843   copying build/lib/resolwe_bio/processes/import_data/abstract_bed.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,845   copying build/lib/resolwe_bio/processes/import_data/annotation_bed.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-05-31T02:11:19,849   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants
2025-05-31T02:11:19,851   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants/tests
2025-05-31T02:11:19,852   copying build/lib/resolwe_bio/variants/tests/test_variant.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-05-31T02:11:19,857   copying build/lib/resolwe_bio/variants/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-05-31T02:11:19,859   copying build/lib/resolwe_bio/variants/tests/test_process.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-05-31T02:11:19,861   copying build/lib/resolwe_bio/variants/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,864   copying build/lib/resolwe_bio/variants/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,866   copying build/lib/resolwe_bio/variants/views.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,869   copying build/lib/resolwe_bio/variants/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,871   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants/migrations
2025-05-31T02:11:19,873   copying build/lib/resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,875   copying build/lib/resolwe_bio/variants/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,877   copying build/lib/resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,879   copying build/lib/resolwe_bio/variants/migrations/0009_alter_variant_alternative_alter_variant_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,881   copying build/lib/resolwe_bio/variants/migrations/0002_rename_unfiltered_allele_depth_variantcall_alternative_allele_depth.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,883   copying build/lib/resolwe_bio/variants/migrations/0005_alter_variantannotation_clinical_diagnosis.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,885   copying build/lib/resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,887   copying build/lib/resolwe_bio/variants/migrations/0001_initial.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,890   copying build/lib/resolwe_bio/variants/migrations/0008_alter_variantannotation_clinical_diagnosis_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,892   copying build/lib/resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-05-31T02:11:19,894   copying build/lib/resolwe_bio/variants/listener_plugin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,897   copying build/lib/resolwe_bio/variants/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,899   copying build/lib/resolwe_bio/variants/serializers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-05-31T02:11:19,902   running install_egg_info
2025-05-31T02:11:19,911   Copying resolwe_bio.egg-info to build/bdist.linux-armv7l/wheel/./resolwe_bio-63.1.0a1-py3.11.egg-info
2025-05-31T02:11:19,925   running install_scripts
2025-05-31T02:11:19,936   creating build/bdist.linux-armv7l/wheel/resolwe_bio-63.1.0a1.dist-info/WHEEL
2025-05-31T02:11:19,939   creating '/tmp/pip-wheel-56o30adl/.tmp-6_c6954e/resolwe_bio-63.1.0a1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-05-31T02:11:19,942   adding 'resolwe_bio/__init__.py'
2025-05-31T02:11:19,943   adding 'resolwe_bio/apps.py'
2025-05-31T02:11:19,945   adding 'resolwe_bio/extensions.py'
2025-05-31T02:11:19,947   adding 'resolwe_bio/filters.py'
2025-05-31T02:11:19,948   adding 'resolwe_bio/models.py'
2025-05-31T02:11:19,950   adding 'resolwe_bio/descriptors/dicty_time_series.yml'
2025-05-31T02:11:19,952   adding 'resolwe_bio/descriptors/diffexp.yml'
2025-05-31T02:11:19,953   adding 'resolwe_bio/descriptors/geneset.yml'
2025-05-31T02:11:19,955   adding 'resolwe_bio/descriptors/reads.yml'
2025-05-31T02:11:19,957   adding 'resolwe_bio/expression_filters/__init__.py'
2025-05-31T02:11:19,958   adding 'resolwe_bio/expression_filters/relation.py'
2025-05-31T02:11:19,960   adding 'resolwe_bio/expression_filters/sample.py'
2025-05-31T02:11:19,961   adding 'resolwe_bio/fixtures/relationtypes.yaml'
2025-05-31T02:11:19,963   adding 'resolwe_bio/kb/__init__.py'
2025-05-31T02:11:19,965   adding 'resolwe_bio/kb/admin.py'
2025-05-31T02:11:19,966   adding 'resolwe_bio/kb/apps.py'
2025-05-31T02:11:19,967   adding 'resolwe_bio/kb/backends.py'
2025-05-31T02:11:19,969   adding 'resolwe_bio/kb/filters.py'
2025-05-31T02:11:19,970   adding 'resolwe_bio/kb/listener_plugin.py'
2025-05-31T02:11:19,972   adding 'resolwe_bio/kb/models.py'
2025-05-31T02:11:19,973   adding 'resolwe_bio/kb/pagination.py'
2025-05-31T02:11:19,974   adding 'resolwe_bio/kb/serializers.py'
2025-05-31T02:11:19,976   adding 'resolwe_bio/kb/views.py'
2025-05-31T02:11:19,978   adding 'resolwe_bio/kb/management/__init__.py'
2025-05-31T02:11:19,979   adding 'resolwe_bio/kb/management/commands/__init__.py'
2025-05-31T02:11:19,981   adding 'resolwe_bio/kb/management/commands/insert_features.py'
2025-05-31T02:11:19,983   adding 'resolwe_bio/kb/management/commands/insert_mappings.py'
2025-05-31T02:11:19,985   adding 'resolwe_bio/kb/management/commands/utils.py'
2025-05-31T02:11:19,987   adding 'resolwe_bio/kb/migrations/0001_initial.py'
2025-05-31T02:11:19,989   adding 'resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py'
2025-05-31T02:11:19,990   adding 'resolwe_bio/kb/migrations/0002_alter_field_max_length.py'
2025-05-31T02:11:19,991   adding 'resolwe_bio/kb/migrations/0003_add_map_index.py'
2025-05-31T02:11:19,993   adding 'resolwe_bio/kb/migrations/0004_add_unique_together.py'
2025-05-31T02:11:19,994   adding 'resolwe_bio/kb/migrations/0005_species.py'
2025-05-31T02:11:19,996   adding 'resolwe_bio/kb/migrations/0006_feature_fullname_300.py'
2025-05-31T02:11:19,997   adding 'resolwe_bio/kb/migrations/0007_feature_fullname_350.py'
2025-05-31T02:11:19,998   adding 'resolwe_bio/kb/migrations/0008_callable_defaults.py'
2025-05-31T02:11:19,999   adding 'resolwe_bio/kb/migrations/0009_full_text_search.py'
2025-05-31T02:11:20,001   adding 'resolwe_bio/kb/migrations/0010_update_indexes_constraints.py'
2025-05-31T02:11:20,002   adding 'resolwe_bio/kb/migrations/0011_feature_type_index.py'
2025-05-31T02:11:20,003   adding 'resolwe_bio/kb/migrations/0012_update_feature_search.py'
2025-05-31T02:11:20,005   adding 'resolwe_bio/kb/migrations/0013_update_feature_search.py'
2025-05-31T02:11:20,006   adding 'resolwe_bio/kb/migrations/0014_update_feature_search.py'
2025-05-31T02:11:20,007   adding 'resolwe_bio/kb/migrations/__init__.py'
2025-05-31T02:11:20,008   adding 'resolwe_bio/kb/migrations/reverse_triggers_feature.sql'
2025-05-31T02:11:20,009   adding 'resolwe_bio/kb/migrations/triggers_feature.sql'
2025-05-31T02:11:20,011   adding 'resolwe_bio/kb/migrations/triggers_feature_2.sql'
2025-05-31T02:11:20,012   adding 'resolwe_bio/kb/tests/__init__.py'
2025-05-31T02:11:20,014   adding 'resolwe_bio/kb/tests/test_feature.py'
2025-05-31T02:11:20,015   adding 'resolwe_bio/kb/tests/test_import_kb.py'
2025-05-31T02:11:20,017   adding 'resolwe_bio/kb/tests/test_mapping.py'
2025-05-31T02:11:20,019   adding 'resolwe_bio/migrations/0001_squashed_0015_sample_indices.py'
2025-05-31T02:11:20,020   adding 'resolwe_bio/migrations/0002_metadata_table_type.py'
2025-05-31T02:11:20,021   adding 'resolwe_bio/migrations/0003_sample_indices.py'
2025-05-31T02:11:20,023   adding 'resolwe_bio/migrations/0004_merge_fastq_type.py'
2025-05-31T02:11:20,024   adding 'resolwe_bio/migrations/0005_remove_descriptor_indices.py'
2025-05-31T02:11:20,025   adding 'resolwe_bio/migrations/0006_update_sql_methods.py'
2025-05-31T02:11:20,026   adding 'resolwe_bio/migrations/__init__.py'
2025-05-31T02:11:20,028   adding 'resolwe_bio/migrations/remove_resolwe_indexes.sql'
2025-05-31T02:11:20,029   adding 'resolwe_bio/migrations/resolwe_indexes.sql'
2025-05-31T02:11:20,030   adding 'resolwe_bio/migrations/resolwe_indexes_2.sql'
2025-05-31T02:11:20,032   adding 'resolwe_bio/migrations/resolwe_indexes_3.sql'
2025-05-31T02:11:20,033   adding 'resolwe_bio/process/__init__.py'
2025-05-31T02:11:20,035   adding 'resolwe_bio/process/models.py'
2025-05-31T02:11:20,036   adding 'resolwe_bio/process/runtime.py'
2025-05-31T02:11:20,039   adding 'resolwe_bio/processes/WGBS/bsrate.py'
2025-05-31T02:11:20,040   adding 'resolwe_bio/processes/WGBS/hmr.yml'
2025-05-31T02:11:20,042   adding 'resolwe_bio/processes/WGBS/methcounts.yml'
2025-05-31T02:11:20,044   adding 'resolwe_bio/processes/WGBS/walt.yml'
2025-05-31T02:11:20,045   adding 'resolwe_bio/processes/WGBS/walt_index.py'
2025-05-31T02:11:20,047   adding 'resolwe_bio/processes/alignment/abstract.yml'
2025-05-31T02:11:20,051   adding 'resolwe_bio/processes/alignment/bowtie.yml'
2025-05-31T02:11:20,053   adding 'resolwe_bio/processes/alignment/bowtie2_index.py'
2025-05-31T02:11:20,054   adding 'resolwe_bio/processes/alignment/bowtie_index.py'
2025-05-31T02:11:20,057   adding 'resolwe_bio/processes/alignment/bwa.yml'
2025-05-31T02:11:20,058   adding 'resolwe_bio/processes/alignment/bwa_index.py'
2025-05-31T02:11:20,060   adding 'resolwe_bio/processes/alignment/bwamem2.yml'
2025-05-31T02:11:20,061   adding 'resolwe_bio/processes/alignment/bwamem2_index.py'
2025-05-31T02:11:20,063   adding 'resolwe_bio/processes/alignment/hisat2.yml'
2025-05-31T02:11:20,065   adding 'resolwe_bio/processes/alignment/hisat2_index.py'
2025-05-31T02:11:20,069   adding 'resolwe_bio/processes/alignment/star.py'
2025-05-31T02:11:20,071   adding 'resolwe_bio/processes/alignment/star_index.py'
2025-05-31T02:11:20,073   adding 'resolwe_bio/processes/annotation/abstract.yml'
2025-05-31T02:11:20,075   adding 'resolwe_bio/processes/annotation/variant_annotation.py'
2025-05-31T02:11:20,077   adding 'resolwe_bio/processes/chip_seq/chipqc.py'
2025-05-31T02:11:20,079   adding 'resolwe_bio/processes/chip_seq/macs14.yml'
2025-05-31T02:11:20,086   adding 'resolwe_bio/processes/chip_seq/macs2.py'
2025-05-31T02:11:20,089   adding 'resolwe_bio/processes/chip_seq/macs2_batch.yml'
2025-05-31T02:11:20,092   adding 'resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml'
2025-05-31T02:11:20,094   adding 'resolwe_bio/processes/chip_seq/prepeak_qc.yml'
2025-05-31T02:11:20,096   adding 'resolwe_bio/processes/chip_seq/rose2.py'
2025-05-31T02:11:20,099   adding 'resolwe_bio/processes/clustering/find_similar.py'
2025-05-31T02:11:20,102   adding 'resolwe_bio/processes/clustering/hierarchical_clustering.py'
2025-05-31T02:11:20,104   adding 'resolwe_bio/processes/clustering/hierarchical_clustering_etc.py'
2025-05-31T02:11:20,106   adding 'resolwe_bio/processes/clustering/pca.py'
2025-05-31T02:11:20,108   adding 'resolwe_bio/processes/differential_expression/abstract.yml'
2025-05-31T02:11:20,110   adding 'resolwe_bio/processes/differential_expression/cuffdiff.py'
2025-05-31T02:11:20,112   adding 'resolwe_bio/processes/differential_expression/deseq.py'
2025-05-31T02:11:20,114   adding 'resolwe_bio/processes/differential_expression/edgeR.py'
2025-05-31T02:11:20,116   adding 'resolwe_bio/processes/expression/abstract.yml'
2025-05-31T02:11:20,118   adding 'resolwe_bio/processes/expression/cufflinks.yml'
2025-05-31T02:11:20,119   adding 'resolwe_bio/processes/expression/cuffnorm.yml'
2025-05-31T02:11:20,121   adding 'resolwe_bio/processes/expression/cuffquant.yml'
2025-05-31T02:11:20,122   adding 'resolwe_bio/processes/expression/dicty_bcm.yml'
2025-05-31T02:11:20,124   adding 'resolwe_bio/processes/expression/expression_aggregator.py'
2025-05-31T02:11:20,128   adding 'resolwe_bio/processes/expression/featureCounts.py'
2025-05-31T02:11:20,130   adding 'resolwe_bio/processes/expression/mappability.yml'
2025-05-31T02:11:20,131   adding 'resolwe_bio/processes/expression/merge_expressions.yml'
2025-05-31T02:11:20,134   adding 'resolwe_bio/processes/expression/salmon.py'
2025-05-31T02:11:20,136   adding 'resolwe_bio/processes/expression/salmon_index.yml'
2025-05-31T02:11:20,138   adding 'resolwe_bio/processes/expression/star_quantification.py'
2025-05-31T02:11:20,140   adding 'resolwe_bio/processes/fusion_calling/arriba.py'
2025-05-31T02:11:20,142   adding 'resolwe_bio/processes/go_enrichment/go.py'
2025-05-31T02:11:20,144   adding 'resolwe_bio/processes/import_data/abstract_bed.yml'
2025-05-31T02:11:20,146   adding 'resolwe_bio/processes/import_data/annotation.yml'
2025-05-31T02:11:20,147   adding 'resolwe_bio/processes/import_data/annotation_bed.yml'
2025-05-31T02:11:20,149   adding 'resolwe_bio/processes/import_data/annotation_bedpe.py'
2025-05-31T02:11:20,150   adding 'resolwe_bio/processes/import_data/bam.yml'
2025-05-31T02:11:20,152   adding 'resolwe_bio/processes/import_data/basespace.py'
2025-05-31T02:11:20,154   adding 'resolwe_bio/processes/import_data/bwamem2_index_files.py'
2025-05-31T02:11:20,155   adding 'resolwe_bio/processes/import_data/cuffquant.yml'
2025-05-31T02:11:20,157   adding 'resolwe_bio/processes/import_data/differential_exp.yml'
2025-05-31T02:11:20,158   adding 'resolwe_bio/processes/import_data/ensembl_vep_cache.py'
2025-05-31T02:11:20,160   adding 'resolwe_bio/processes/import_data/expressions.py'
2025-05-31T02:11:20,162   adding 'resolwe_bio/processes/import_data/geneset.py'
2025-05-31T02:11:20,163   adding 'resolwe_bio/processes/import_data/go_gaf.yml'
2025-05-31T02:11:20,165   adding 'resolwe_bio/processes/import_data/go_obo.yml'
2025-05-31T02:11:20,166   adding 'resolwe_bio/processes/import_data/mappability_tab.yml'
2025-05-31T02:11:20,168   adding 'resolwe_bio/processes/import_data/metadata.py'
2025-05-31T02:11:20,169   adding 'resolwe_bio/processes/import_data/methylation_array_idat.py'
2025-05-31T02:11:20,171   adding 'resolwe_bio/processes/import_data/ml_ready_expressions.py'
2025-05-31T02:11:20,172   adding 'resolwe_bio/processes/import_data/ml_ready_reference.py'
2025-05-31T02:11:20,174   adding 'resolwe_bio/processes/import_data/nucleotide_seq.py'
2025-05-31T02:11:20,177   adding 'resolwe_bio/processes/import_data/seq_reads.py'
2025-05-31T02:11:20,179   adding 'resolwe_bio/processes/import_data/sra_file.py'
2025-05-31T02:11:20,181   adding 'resolwe_bio/processes/import_data/variants_vcf.yml'
2025-05-31T02:11:20,183   adding 'resolwe_bio/processes/junctions/regtools.yml'
2025-05-31T02:11:20,186   adding 'resolwe_bio/processes/microarray/map_probes.py'
2025-05-31T02:11:20,188   adding 'resolwe_bio/processes/microarray/methylation_arrays.py'
2025-05-31T02:11:20,190   adding 'resolwe_bio/processes/microarray/microarray_expression.py'
2025-05-31T02:11:20,193   adding 'resolwe_bio/processes/plots/bamliquidator.yml'
2025-05-31T02:11:20,195   adding 'resolwe_bio/processes/plots/bamplot.yml'
2025-05-31T02:11:20,197   adding 'resolwe_bio/processes/reads_processing/alignmentsieve.py'
2025-05-31T02:11:20,198   adding 'resolwe_bio/processes/reads_processing/bam_to_fastq.py'
2025-05-31T02:11:20,200   adding 'resolwe_bio/processes/reads_processing/bamclipper.py'
2025-05-31T02:11:20,204   adding 'resolwe_bio/processes/reads_processing/bbduk.py'
2025-05-31T02:11:20,206   adding 'resolwe_bio/processes/reads_processing/bqsr.py'
2025-05-31T02:11:20,208   adding 'resolwe_bio/processes/reads_processing/cutadapt.yml'
2025-05-31T02:11:20,210   adding 'resolwe_bio/processes/reads_processing/cutadapt_3prime.py'
2025-05-31T02:11:20,212   adding 'resolwe_bio/processes/reads_processing/cutadapt_corall.py'
2025-05-31T02:11:20,214   adding 'resolwe_bio/processes/reads_processing/markduplicates.py'
2025-05-31T02:11:20,216   adding 'resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py'
2025-05-31T02:11:20,218   adding 'resolwe_bio/processes/reads_processing/split_ncigar.py'
2025-05-31T02:11:20,220   adding 'resolwe_bio/processes/reads_processing/trimgalore.py'
2025-05-31T02:11:20,223   adding 'resolwe_bio/processes/reads_processing/trimmomatic.yml'
2025-05-31T02:11:20,226   adding 'resolwe_bio/processes/reads_processing/xengsort.py'
2025-05-31T02:11:20,228   adding 'resolwe_bio/processes/samtools/samtools_bedcov.py'
2025-05-31T02:11:20,230   adding 'resolwe_bio/processes/samtools/samtools_coverage.py'
2025-05-31T02:11:20,231   adding 'resolwe_bio/processes/samtools/samtools_depth.py'
2025-05-31T02:11:20,234   adding 'resolwe_bio/processes/samtools/samtools_mpileup.py'
2025-05-31T02:11:20,236   adding 'resolwe_bio/processes/samtools/samtools_view.py'
2025-05-31T02:11:20,238   adding 'resolwe_bio/processes/support_processors/alignment_summary.py'
2025-05-31T02:11:20,240   adding 'resolwe_bio/processes/support_processors/archive.yml'
2025-05-31T02:11:20,241   adding 'resolwe_bio/processes/support_processors/bam_conversion.py'
2025-05-31T02:11:20,243   adding 'resolwe_bio/processes/support_processors/gff_to_gtf.yml'
2025-05-31T02:11:20,245   adding 'resolwe_bio/processes/support_processors/gtf_to_bed.py'
2025-05-31T02:11:20,246   adding 'resolwe_bio/processes/support_processors/insert_size.py'
2025-05-31T02:11:20,248   adding 'resolwe_bio/processes/support_processors/library_strandedness.yml'
2025-05-31T02:11:20,250   adding 'resolwe_bio/processes/support_processors/merge_samples.py'
2025-05-31T02:11:20,253   adding 'resolwe_bio/processes/support_processors/multiqc.py'
2025-05-31T02:11:20,257   adding 'resolwe_bio/processes/support_processors/mutations_table.py'
2025-05-31T02:11:20,259   adding 'resolwe_bio/processes/support_processors/qorts_qc.py'
2025-05-31T02:11:20,261   adding 'resolwe_bio/processes/support_processors/rnaseqc_qc.py'
2025-05-31T02:11:20,263   adding 'resolwe_bio/processes/support_processors/rrbs_metrics.py'
2025-05-31T02:11:20,264   adding 'resolwe_bio/processes/support_processors/samtools_idxstats.py'
2025-05-31T02:11:20,266   adding 'resolwe_bio/processes/support_processors/seqtk.py'
2025-05-31T02:11:20,267   adding 'resolwe_bio/processes/support_processors/spikeins_qc.yml'
2025-05-31T02:11:20,269   adding 'resolwe_bio/processes/support_processors/umi_tools.py'
2025-05-31T02:11:20,270   adding 'resolwe_bio/processes/support_processors/wgs_metrics.py'
2025-05-31T02:11:20,272   adding 'resolwe_bio/processes/unit_tests/test_basic_fields.yml'
2025-05-31T02:11:20,274   adding 'resolwe_bio/processes/unit_tests/test_disabled_fields.yml'
2025-05-31T02:11:20,275   adding 'resolwe_bio/processes/unit_tests/test_hidden_fields.yml'
2025-05-31T02:11:20,276   adding 'resolwe_bio/processes/unit_tests/test_list.yml'
2025-05-31T02:11:20,278   adding 'resolwe_bio/processes/unit_tests/test_sleep_progress.yml'
2025-05-31T02:11:20,280   adding 'resolwe_bio/processes/variant_calling/create_genomicsdb.py'
2025-05-31T02:11:20,282   adding 'resolwe_bio/processes/variant_calling/ensembl_vep.py'
2025-05-31T02:11:20,284   adding 'resolwe_bio/processes/variant_calling/filtering_chemut.py'
2025-05-31T02:11:20,286   adding 'resolwe_bio/processes/variant_calling/gatk4.py'
2025-05-31T02:11:20,287   adding 'resolwe_bio/processes/variant_calling/gatk4_hc.py'
2025-05-31T02:11:20,289   adding 'resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py'
2025-05-31T02:11:20,291   adding 'resolwe_bio/processes/variant_calling/gatk_select_variants.py'
2025-05-31T02:11:20,293   adding 'resolwe_bio/processes/variant_calling/gatk_variant_filtration.py'
2025-05-31T02:11:20,295   adding 'resolwe_bio/processes/variant_calling/gatk_variant_refinement.py'
2025-05-31T02:11:20,296   adding 'resolwe_bio/processes/variant_calling/genotype_gvcfs.py'
2025-05-31T02:11:20,298   adding 'resolwe_bio/processes/variant_calling/snpeff.py'
2025-05-31T02:11:20,300   adding 'resolwe_bio/processes/variant_calling/variants_to_table.py'
2025-05-31T02:11:20,302   adding 'resolwe_bio/processes/variant_calling/vc_chemut.py'
2025-05-31T02:11:20,304   adding 'resolwe_bio/processes/variant_calling/vqsr.py'
2025-05-31T02:11:20,306   adding 'resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py'
2025-05-31T02:11:20,310   adding 'resolwe_bio/processes/workflows/atac_seq.yml'
2025-05-31T02:11:20,312   adding 'resolwe_bio/processes/workflows/bbduk_salmon_qc.py'
2025-05-31T02:11:20,316   adding 'resolwe_bio/processes/workflows/bbduk_star.py'
2025-05-31T02:11:20,320   adding 'resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py'
2025-05-31T02:11:20,322   adding 'resolwe_bio/processes/workflows/chemut.yml'
2025-05-31T02:11:20,325   adding 'resolwe_bio/processes/workflows/chip_seq.yml'
2025-05-31T02:11:20,327   adding 'resolwe_bio/processes/workflows/corall.yml'
2025-05-31T02:11:20,328   adding 'resolwe_bio/processes/workflows/cuffquant.yml'
2025-05-31T02:11:20,331   adding 'resolwe_bio/processes/workflows/cut_and_run.py'
2025-05-31T02:11:20,333   adding 'resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py'
2025-05-31T02:11:20,335   adding 'resolwe_bio/processes/workflows/geo_import.py'
2025-05-31T02:11:20,337   adding 'resolwe_bio/processes/workflows/mirna.yml'
2025-05-31T02:11:20,339   adding 'resolwe_bio/processes/workflows/quantseq.py'
2025-05-31T02:11:20,343   adding 'resolwe_bio/processes/workflows/rnaseq_variant_calling.py'
2025-05-31T02:11:20,346   adding 'resolwe_bio/processes/workflows/wes.yml'
2025-05-31T02:11:20,349   adding 'resolwe_bio/processes/workflows/wgbs.yml'
2025-05-31T02:11:20,351   adding 'resolwe_bio/processes/workflows/wgs.yml'
2025-05-31T02:11:20,354   adding 'resolwe_bio/processes/workflows/wgs_gvcf.py'
2025-05-31T02:11:20,355   adding 'resolwe_bio/tests/__init__.py'
2025-05-31T02:11:20,363   adding 'resolwe_bio/tests/files/00Hr.fastq.gz'
2025-05-31T02:11:20,365   adding 'resolwe_bio/tests/files/20Hr.fastq.gz'
2025-05-31T02:11:20,367   adding 'resolwe_bio/tests/files/3-cuffquant.cxb'
2025-05-31T02:11:20,369   adding 'resolwe_bio/tests/files/3_prime_adapter.fasta.gz'
2025-05-31T02:11:20,371   adding 'resolwe_bio/tests/files/4-cuffquant.cxb'
2025-05-31T02:11:20,374   adding 'resolwe_bio/tests/files/5-cuffquant.cxb'
2025-05-31T02:11:20,375   adding 'resolwe_bio/tests/files/5_prime_adapter.fasta.gz'
2025-05-31T02:11:20,378   adding 'resolwe_bio/tests/files/6-cuffquant.cxb'
2025-05-31T02:11:20,381   adding 'resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R1.fq.gz'
2025-05-31T02:11:20,384   adding 'resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R2.fq.gz'
2025-05-31T02:11:20,482   adding 'resolwe_bio/tests/files/HS chr21_ensembl.fa.gz'
2025-05-31T02:11:20,488   adding 'resolwe_bio/tests/files/HS chr21_short.gtf.gz'
2025-05-31T02:11:20,490   adding 'resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.fa.gz'
2025-05-31T02:11:20,491   adding 'resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.gtf.gz'
2025-05-31T02:11:20,500   adding 'resolwe_bio/tests/files/Homo_sapiens_globin_reference.fasta.gz'
2025-05-31T02:11:20,502   adding 'resolwe_bio/tests/files/Homo_sapiens_rRNA.fasta.gz'
2025-05-31T02:11:20,503   adding 'resolwe_bio/tests/files/Hs GRCh38_86 upload.gtf'
2025-05-31T02:11:20,505   adding 'resolwe_bio/tests/files/Hs GRCh38_86 upload_sorted.gtf'
2025-05-31T02:11:20,506   adding 'resolwe_bio/tests/files/PGSC upload.gff3'
2025-05-31T02:11:20,507   adding 'resolwe_bio/tests/files/PGSC upload_sorted.gff3'
2025-05-31T02:11:20,516   adding 'resolwe_bio/tests/files/SRR2124780_1 1k.fastq.gz'
2025-05-31T02:11:20,525   adding 'resolwe_bio/tests/files/SRR2124780_2 1k.fastq.gz'
2025-05-31T02:11:20,530   adding 'resolwe_bio/tests/files/SRR2141558_chr1_20k.fq.gz'
2025-05-31T02:11:20,531   adding 'resolwe_bio/tests/files/SRR2141558_chr1_20k_SJ.bed'
2025-05-31T02:11:20,533   adding 'resolwe_bio/tests/files/Test_S1_L001_R1_001.fastq.gz'
2025-05-31T02:11:20,534   adding 'resolwe_bio/tests/files/Test_S1_L002_R1_001.fastq.gz'
2025-05-31T02:11:20,536   adding 'resolwe_bio/tests/files/adapters.fasta'
2025-05-31T02:11:20,537   adding 'resolwe_bio/tests/files/annotation dicty.gff.gz'
2025-05-31T02:11:20,538   adding 'resolwe_bio/tests/files/annotation dicty.gtf.gz'
2025-05-31T02:11:20,539   adding 'resolwe_bio/tests/files/annotation_rsem.gtf.gz'
2025-05-31T02:11:20,591   adding 'resolwe_bio/tests/files/atac_R1.fastq.gz'
2025-05-31T02:11:20,645   adding 'resolwe_bio/tests/files/atac_R2.fastq.gz'
2025-05-31T02:11:20,649   adding 'resolwe_bio/tests/files/atac_seq_prepeak_report.txt'
2025-05-31T02:11:20,650   adding 'resolwe_bio/tests/files/atac_seq_report.txt'
2025-05-31T02:11:20,652   adding 'resolwe_bio/tests/files/bad.bed'
2025-05-31T02:11:20,653   adding 'resolwe_bio/tests/files/bamplot.bed'
2025-05-31T02:11:20,654   adding 'resolwe_bio/tests/files/bamplot.gff'
2025-05-31T02:11:20,657   adding 'resolwe_bio/tests/files/bamplot_ alignment1.bam'
2025-05-31T02:11:20,661   adding 'resolwe_bio/tests/files/bamplot_alignment.bam'
2025-05-31T02:11:20,662   adding 'resolwe_bio/tests/files/box_plot.json.gz'
2025-05-31T02:11:20,667   adding 'resolwe_bio/tests/files/bt2_index.tar.gz'
2025-05-31T02:11:20,671   adding 'resolwe_bio/tests/files/bt_index.tar.gz'
2025-05-31T02:11:20,672   adding 'resolwe_bio/tests/files/bwa_index.tar.gz'
2025-05-31T02:11:20,677   adding 'resolwe_bio/tests/files/chr1_paired_R1.fastq.gz'
2025-05-31T02:11:20,679   adding 'resolwe_bio/tests/files/chr1_paired_R1_workflow_bbduk_star_htseq_preprocessed_expressions.txt.gz'
2025-05-31T02:11:20,685   adding 'resolwe_bio/tests/files/chr1_paired_R2.fastq.gz'
2025-05-31T02:11:20,724   adding 'resolwe_bio/tests/files/chr1_region.bam'
2025-05-31T02:11:20,728   adding 'resolwe_bio/tests/files/chr1_region.fasta.gz'
2025-05-31T02:11:20,730   adding 'resolwe_bio/tests/files/chr1_region.gtf.gz'
2025-05-31T02:11:20,731   adding 'resolwe_bio/tests/files/chr1_region_UCSC.gtf.gz'
2025-05-31T02:11:20,732   adding 'resolwe_bio/tests/files/chr1_region_salmon.gtf.gz'
2025-05-31T02:11:20,734   adding 'resolwe_bio/tests/files/chr1_region_ucsc.bam'
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2025-05-31T02:11:21,390   adding 'resolwe_bio/tests/files/arriba/input/minigenome.fasta.gz'
2025-05-31T02:11:21,392   adding 'resolwe_bio/tests/files/arriba/input/minigenome.gtf.gz'
2025-05-31T02:11:21,423   adding 'resolwe_bio/tests/files/arriba/input/reads_R1.fastq.gz'
2025-05-31T02:11:21,457   adding 'resolwe_bio/tests/files/arriba/input/reads_R2.fastq.gz'
2025-05-31T02:11:21,461   adding 'resolwe_bio/tests/files/arriba/output/expected_discarded_fusions.tsv.gz'
2025-05-31T02:11:21,462   adding 'resolwe_bio/tests/files/arriba/output/expected_fusions.tsv.gz'
2025-05-31T02:11:21,465   adding 'resolwe_bio/tests/files/bam_processing/input/reads.bedpe'
2025-05-31T02:11:21,466   adding 'resolwe_bio/tests/files/bam_processing/input/scaffold_418_subset.bed'
2025-05-31T02:11:21,468   adding 'resolwe_bio/tests/files/bam_processing/output/reads.SInorm.bigwig'
2025-05-31T02:11:21,469   adding 'resolwe_bio/tests/files/bam_processing/output/reads.bigwig'
2025-05-31T02:11:21,471   adding 'resolwe_bio/tests/files/bam_processing/output/reads_2.bigwig'
2025-05-31T02:11:21,480   adding 'resolwe_bio/tests/files/bamclipper/input/TP53.bam'
2025-05-31T02:11:21,482   adding 'resolwe_bio/tests/files/bamclipper/input/TP53.bedpe'
2025-05-31T02:11:21,491   adding 'resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam'
2025-05-31T02:11:21,493   adding 'resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam.bai'
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2025-05-31T02:11:21,504   adding 'resolwe_bio/tests/files/bamtofastq/input/alignment.bam'
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2025-05-31T02:11:21,513   adding 'resolwe_bio/tests/files/bamtofastq/output/output_reads_mate2.fastq.gz'
2025-05-31T02:11:21,516   adding 'resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R1_001.fastq.gz'
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2025-05-31T02:11:21,526   adding 'resolwe_bio/tests/files/bbduk/input/barcodes.fasta'
2025-05-31T02:11:21,528   adding 'resolwe_bio/tests/files/bbduk/input/bbduk_adapters.fasta'
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2025-05-31T02:11:21,805   adding 'resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam'
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2025-05-31T02:11:22,020   adding 'resolwe_bio/tests/files/corall/output/stringtie_transcripts.ctab'
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2025-05-31T02:11:22,027   adding 'resolwe_bio/tests/files/diff_exp/output/deseq2_volcano_plot.json.gz'
2025-05-31T02:11:22,028   adding 'resolwe_bio/tests/files/diff_exp/output/diff_exp_check_types.json.gz'
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2025-05-31T02:11:22,481   adding 'resolwe_bio/tests/files/macs2/input/SRR5675973_chr17.bam'
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2025-05-31T02:11:22,800   adding 'resolwe_bio/tests/files/macs2/input/paired_end_discodeum.bam'
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2025-05-31T02:11:22,812   adding 'resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam'
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2025-05-31T02:11:23,534   adding 'resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt'
2025-05-31T02:11:23,535   adding 'resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_wgs_metrics.txt'
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2025-05-31T02:11:24,064   adding 'resolwe_bio/tools/bamliquidator_table.py'
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2025-05-31T02:11:24,124   adding 'resolwe_bio/utils/test.py'
2025-05-31T02:11:24,126   adding 'resolwe_bio/variants/__init__.py'
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2025-05-31T02:11:24,134   adding 'resolwe_bio/variants/models.py'
2025-05-31T02:11:24,135   adding 'resolwe_bio/variants/serializers.py'
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2025-05-31T02:11:24,139   adding 'resolwe_bio/variants/migrations/0001_initial.py'
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2025-05-31T02:11:24,142   adding 'resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py'
2025-05-31T02:11:24,143   adding 'resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py'
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2025-05-31T02:11:24,146   adding 'resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py'
2025-05-31T02:11:24,147   adding 'resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py'
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2025-05-31T02:11:24,151   adding 'resolwe_bio/variants/migrations/__init__.py'
2025-05-31T02:11:24,153   adding 'resolwe_bio/variants/tests/__init__.py'
2025-05-31T02:11:24,154   adding 'resolwe_bio/variants/tests/test_process.py'
2025-05-31T02:11:24,160   adding 'resolwe_bio/variants/tests/test_variant.py'
2025-05-31T02:11:24,164   adding 'resolwe_bio-63.1.0a1.dist-info/LICENSE'
2025-05-31T02:11:24,166   adding 'resolwe_bio-63.1.0a1.dist-info/METADATA'
2025-05-31T02:11:24,167   adding 'resolwe_bio-63.1.0a1.dist-info/WHEEL'
2025-05-31T02:11:24,169   adding 'resolwe_bio-63.1.0a1.dist-info/top_level.txt'
2025-05-31T02:11:24,191   adding 'resolwe_bio-63.1.0a1.dist-info/RECORD'
2025-05-31T02:11:24,521   removing build/bdist.linux-armv7l/wheel
2025-05-31T02:11:25,298   Building wheel for resolwe-bio (pyproject.toml): finished with status 'done'
2025-05-31T02:11:27,219   Created wheel for resolwe-bio: filename=resolwe_bio-63.1.0a1-py3-none-any.whl size=22853769 sha256=17f7cbaad3234b96dcbbf1157b5d44ced75cf187119a5184e62e487a7a40d1bb
2025-05-31T02:11:27,220   Stored in directory: /tmp/pip-ephem-wheel-cache-6jeoxu4p/wheels/c7/54/e1/a1b7c190e873e71f3b9ea6624f78e83aefd1483c838b89cfe9
2025-05-31T02:11:27,273 Successfully built resolwe-bio
2025-05-31T02:11:28,237 Removed build tracker: '/tmp/pip-build-tracker-a2oj18tm'