2025-05-31T05:03:15,461 Created temporary directory: /tmp/pip-build-tracker-bi1r2wmb 2025-05-31T05:03:15,462 Initialized build tracking at /tmp/pip-build-tracker-bi1r2wmb 2025-05-31T05:03:15,463 Created build tracker: /tmp/pip-build-tracker-bi1r2wmb 2025-05-31T05:03:15,463 Entered build tracker: /tmp/pip-build-tracker-bi1r2wmb 2025-05-31T05:03:15,464 Created temporary directory: /tmp/pip-wheel-ps4hrhzm 2025-05-31T05:03:15,468 Created temporary directory: /tmp/pip-ephem-wheel-cache-yokr9h7b 2025-05-31T05:03:15,524 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-31T05:03:15,526 2 location(s) to search for versions of wgs-analysis: 2025-05-31T05:03:15,526 * https://pypi.org/simple/wgs-analysis/ 2025-05-31T05:03:15,526 * https://www.piwheels.org/simple/wgs-analysis/ 2025-05-31T05:03:15,527 Fetching project page and analyzing links: https://pypi.org/simple/wgs-analysis/ 2025-05-31T05:03:15,528 Getting page https://pypi.org/simple/wgs-analysis/ 2025-05-31T05:03:15,529 Found index url https://pypi.org/simple/ 2025-05-31T05:03:15,751 Fetched page https://pypi.org/simple/wgs-analysis/ as application/vnd.pypi.simple.v1+json 2025-05-31T05:03:15,754 Found link https://files.pythonhosted.org/packages/ea/41/e71b578f8e83982d7807eb45a68c072a55c919b9800542fdff88ee5e5b29/wgs_analysis-0.0.3.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.3 2025-05-31T05:03:15,755 Found link https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.4 2025-05-31T05:03:15,756 Found link https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.5 2025-05-31T05:03:15,758 Found link https://files.pythonhosted.org/packages/fb/c8/861aca92681a2e17d3175e83d6593d0b6dce38ea4896d9798c0fc4273eeb/wgs_analysis-0.0.6.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.6 2025-05-31T05:03:15,759 Found link https://files.pythonhosted.org/packages/a7/a7/616d11f01c23bf6d60e812bcd52a6210df93b48399e8df4bda0271cea781/wgs_analysis-0.0.7.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.7 2025-05-31T05:03:15,760 Fetching project page and analyzing links: https://www.piwheels.org/simple/wgs-analysis/ 2025-05-31T05:03:15,761 Getting page https://www.piwheels.org/simple/wgs-analysis/ 2025-05-31T05:03:15,763 Found index url https://www.piwheels.org/simple/ 2025-05-31T05:03:15,923 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wgs-analysis/ 2025-05-31T05:03:16,578 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wgs-analysis/ 2025-05-31T05:03:17,762 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wgs-analysis/ 2025-05-31T05:03:19,928 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wgs-analysis/ 2025-05-31T05:03:24,104 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wgs-analysis/ 2025-05-31T05:03:24,285 Could not fetch URL https://www.piwheels.org/simple/wgs-analysis/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/wgs-analysis/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-31T05:03:24,287 Skipping link: not a file: https://www.piwheels.org/simple/wgs-analysis/ 2025-05-31T05:03:24,288 Skipping link: not a file: https://pypi.org/simple/wgs-analysis/ 2025-05-31T05:03:24,309 Given no hashes to check 1 links for project 'wgs-analysis': discarding no candidates 2025-05-31T05:03:24,311 Collecting wgs-analysis==0.0.7 2025-05-31T05:03:24,313 Created temporary directory: /tmp/pip-unpack-8sb4u991 2025-05-31T05:03:24,537 Downloading wgs_analysis-0.0.7.tar.gz (86 kB) 2025-05-31T05:03:24,739 Added wgs-analysis==0.0.7 from https://files.pythonhosted.org/packages/a7/a7/616d11f01c23bf6d60e812bcd52a6210df93b48399e8df4bda0271cea781/wgs_analysis-0.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-bi1r2wmb' 2025-05-31T05:03:24,741 Running setup.py (path:/tmp/pip-wheel-ps4hrhzm/wgs-analysis_3f38fe3e52c84b95aa7805ce437aff8e/setup.py) egg_info for package wgs-analysis 2025-05-31T05:03:24,742 Created temporary directory: /tmp/pip-pip-egg-info-mls57h9g 2025-05-31T05:03:24,743 Preparing metadata (setup.py): started 2025-05-31T05:03:24,744 Running command python setup.py egg_info 2025-05-31T05:03:25,653 running egg_info 2025-05-31T05:03:25,683 creating /tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info 2025-05-31T05:03:25,684 writing /tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/PKG-INFO 2025-05-31T05:03:25,687 writing dependency_links to /tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/dependency_links.txt 2025-05-31T05:03:25,690 writing top-level names to /tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/top_level.txt 2025-05-31T05:03:25,691 writing manifest file '/tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/SOURCES.txt' 2025-05-31T05:03:25,765 reading manifest file '/tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/SOURCES.txt' 2025-05-31T05:03:25,767 reading manifest template 'MANIFEST.in' 2025-05-31T05:03:25,771 writing manifest file '/tmp/pip-pip-egg-info-mls57h9g/wgs_analysis.egg-info/SOURCES.txt' 2025-05-31T05:03:25,876 Preparing metadata (setup.py): finished with status 'done' 2025-05-31T05:03:25,880 Source in /tmp/pip-wheel-ps4hrhzm/wgs-analysis_3f38fe3e52c84b95aa7805ce437aff8e has version 0.0.7, which satisfies requirement wgs-analysis==0.0.7 from https://files.pythonhosted.org/packages/a7/a7/616d11f01c23bf6d60e812bcd52a6210df93b48399e8df4bda0271cea781/wgs_analysis-0.0.7.tar.gz 2025-05-31T05:03:25,881 Removed wgs-analysis==0.0.7 from https://files.pythonhosted.org/packages/a7/a7/616d11f01c23bf6d60e812bcd52a6210df93b48399e8df4bda0271cea781/wgs_analysis-0.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-bi1r2wmb' 2025-05-31T05:03:25,884 Created temporary directory: /tmp/pip-unpack-at5ooi7n 2025-05-31T05:03:25,885 Created temporary directory: /tmp/pip-unpack-esfc2g_d 2025-05-31T05:03:25,886 Building wheels for collected packages: wgs-analysis 2025-05-31T05:03:25,890 Created temporary directory: /tmp/pip-wheel-h5ec4grc 2025-05-31T05:03:25,891 DEPRECATION: Building 'wgs-analysis' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'wgs-analysis'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-31T05:03:25,892 Building wheel for wgs-analysis (setup.py): started 2025-05-31T05:03:25,894 Destination directory: /tmp/pip-wheel-h5ec4grc 2025-05-31T05:03:25,894 Running command python setup.py bdist_wheel 2025-05-31T05:03:26,735 running bdist_wheel 2025-05-31T05:03:26,840 running build 2025-05-31T05:03:26,841 running build_py 2025-05-31T05:03:26,846 creating build/lib/wgs_analysis 2025-05-31T05:03:26,848 copying wgs_analysis/refgenome.py -> build/lib/wgs_analysis 2025-05-31T05:03:26,850 copying wgs_analysis/__init__.py -> build/lib/wgs_analysis 2025-05-31T05:03:26,852 copying wgs_analysis/_version.py -> build/lib/wgs_analysis 2025-05-31T05:03:26,854 creating build/lib/wgs_analysis/snvs 2025-05-31T05:03:26,855 copying wgs_analysis/snvs/__init__.py -> build/lib/wgs_analysis/snvs 2025-05-31T05:03:26,857 copying wgs_analysis/snvs/mutsig.py -> build/lib/wgs_analysis/snvs 2025-05-31T05:03:26,860 creating build/lib/wgs_analysis/plots 2025-05-31T05:03:26,862 copying wgs_analysis/plots/clones.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,864 copying wgs_analysis/plots/cnv.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,868 copying wgs_analysis/plots/__init__.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,869 copying wgs_analysis/plots/rearrangement.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,873 copying wgs_analysis/plots/circos.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,875 copying wgs_analysis/plots/colors.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,877 copying wgs_analysis/plots/heatmap.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,880 copying wgs_analysis/plots/utils.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,882 copying wgs_analysis/plots/trees.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,884 copying wgs_analysis/plots/positions.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,886 copying wgs_analysis/plots/snv.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,889 copying wgs_analysis/plots/singlecell.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,892 copying wgs_analysis/plots/general.py -> build/lib/wgs_analysis/plots 2025-05-31T05:03:26,894 creating build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,895 copying wgs_analysis/annotation/cnv.py -> build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,898 copying wgs_analysis/annotation/__init__.py -> build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,900 copying wgs_analysis/annotation/rearrangement.py -> build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,903 copying wgs_analysis/annotation/position.py -> build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,905 copying wgs_analysis/annotation/snv.py -> build/lib/wgs_analysis/annotation 2025-05-31T05:03:26,907 creating build/lib/wgs_analysis/tests 2025-05-31T05:03:26,908 copying wgs_analysis/tests/test_breakpoint_db.py -> build/lib/wgs_analysis/tests 2025-05-31T05:03:26,911 copying wgs_analysis/tests/__init__.py -> build/lib/wgs_analysis/tests 2025-05-31T05:03:26,913 creating build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,914 copying wgs_analysis/experiments/design_primers.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,918 copying wgs_analysis/experiments/design_experiment.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,920 copying wgs_analysis/experiments/design_utils.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,922 copying wgs_analysis/experiments/__init__.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,924 copying wgs_analysis/experiments/design_break_primers.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,926 copying wgs_analysis/experiments/blat_server.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,929 copying wgs_analysis/experiments/design_snv_primers.py -> build/lib/wgs_analysis/experiments 2025-05-31T05:03:26,932 creating build/lib/wgs_analysis/tables 2025-05-31T05:03:26,934 copying wgs_analysis/tables/clones.py -> build/lib/wgs_analysis/tables 2025-05-31T05:03:26,937 copying wgs_analysis/tables/__init__.py -> build/lib/wgs_analysis/tables 2025-05-31T05:03:26,939 copying wgs_analysis/tables/trees.py -> build/lib/wgs_analysis/tables 2025-05-31T05:03:26,943 copying wgs_analysis/tables/gene_matrix.py -> build/lib/wgs_analysis/tables 2025-05-31T05:03:26,946 copying wgs_analysis/tables/io.py -> build/lib/wgs_analysis/tables 2025-05-31T05:03:26,949 creating build/lib/wgs_analysis/utils 2025-05-31T05:03:26,950 copying wgs_analysis/utils/__init__.py -> build/lib/wgs_analysis/utils 2025-05-31T05:03:26,953 copying wgs_analysis/utils/trees.py -> build/lib/wgs_analysis/utils 2025-05-31T05:03:26,956 creating build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,957 copying wgs_analysis/algorithms/cnv.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,960 copying wgs_analysis/algorithms/merge.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,962 copying wgs_analysis/algorithms/__init__.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,964 copying wgs_analysis/algorithms/rearrangement.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,966 copying wgs_analysis/algorithms/position.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,968 copying wgs_analysis/algorithms/tree.py -> build/lib/wgs_analysis/algorithms 2025-05-31T05:03:26,977 creating build/lib/wgs_analysis/data 2025-05-31T05:03:26,978 copying wgs_analysis/data/GRCh38.fa.fai -> build/lib/wgs_analysis/data 2025-05-31T05:03:26,980 copying wgs_analysis/data/GRCh37-lite.fa.fai -> build/lib/wgs_analysis/data 2025-05-31T05:03:26,983 copying wgs_analysis/data/signatures_probabilities.tsv -> build/lib/wgs_analysis/data 2025-05-31T05:03:26,990 UPDATING build/lib/wgs_analysis/_version.py 2025-05-31T05:03:26,991 set build/lib/wgs_analysis/_version.py to '0.0.7' 2025-05-31T05:03:27,019 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-31T05:03:27,020 !! 2025-05-31T05:03:27,021 ******************************************************************************** 2025-05-31T05:03:27,021 Please avoid running ``setup.py`` directly. 2025-05-31T05:03:27,022 Instead, use pypa/build, pypa/installer or other 2025-05-31T05:03:27,023 standards-based tools. 2025-05-31T05:03:27,024 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-31T05:03:27,024 or your builds will no longer be supported. 2025-05-31T05:03:27,025 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-31T05:03:27,026 ******************************************************************************** 2025-05-31T05:03:27,027 !! 2025-05-31T05:03:27,028 self.initialize_options() 2025-05-31T05:03:27,048 installing to build/bdist.linux-armv7l/wheel 2025-05-31T05:03:27,049 running install 2025-05-31T05:03:27,072 running install_lib 2025-05-31T05:03:27,100 creating build/bdist.linux-armv7l/wheel 2025-05-31T05:03:27,102 creating build/bdist.linux-armv7l/wheel/wgs_analysis 2025-05-31T05:03:27,103 copying build/lib/wgs_analysis/refgenome.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2025-05-31T05:03:27,106 creating build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2025-05-31T05:03:27,107 copying build/lib/wgs_analysis/snvs/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/snvs 2025-05-31T05:03:27,109 copying build/lib/wgs_analysis/snvs/mutsig.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/snvs 2025-05-31T05:03:27,112 creating build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2025-05-31T05:03:27,113 copying build/lib/wgs_analysis/plots/clones.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,116 copying build/lib/wgs_analysis/plots/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,119 copying build/lib/wgs_analysis/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,121 copying build/lib/wgs_analysis/plots/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,124 copying build/lib/wgs_analysis/plots/circos.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,127 copying build/lib/wgs_analysis/plots/colors.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,129 copying build/lib/wgs_analysis/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,131 copying build/lib/wgs_analysis/plots/utils.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,133 copying build/lib/wgs_analysis/plots/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,136 copying build/lib/wgs_analysis/plots/positions.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,138 copying build/lib/wgs_analysis/plots/snv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,141 copying build/lib/wgs_analysis/plots/singlecell.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,143 copying build/lib/wgs_analysis/plots/general.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2025-05-31T05:03:27,146 creating build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2025-05-31T05:03:27,148 copying build/lib/wgs_analysis/annotation/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2025-05-31T05:03:27,150 copying build/lib/wgs_analysis/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2025-05-31T05:03:27,152 copying build/lib/wgs_analysis/annotation/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2025-05-31T05:03:27,155 copying build/lib/wgs_analysis/annotation/position.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2025-05-31T05:03:27,157 copying build/lib/wgs_analysis/annotation/snv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2025-05-31T05:03:27,159 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2025-05-31T05:03:27,161 copying build/lib/wgs_analysis/tests/test_breakpoint_db.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tests 2025-05-31T05:03:27,163 copying build/lib/wgs_analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tests 2025-05-31T05:03:27,165 creating build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2025-05-31T05:03:27,167 copying build/lib/wgs_analysis/experiments/design_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,170 copying build/lib/wgs_analysis/experiments/design_experiment.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,173 copying build/lib/wgs_analysis/experiments/design_utils.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,175 copying build/lib/wgs_analysis/experiments/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,176 copying build/lib/wgs_analysis/experiments/design_break_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,179 copying build/lib/wgs_analysis/experiments/blat_server.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,181 copying build/lib/wgs_analysis/experiments/design_snv_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2025-05-31T05:03:27,184 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2025-05-31T05:03:27,185 copying build/lib/wgs_analysis/tables/clones.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2025-05-31T05:03:27,188 copying build/lib/wgs_analysis/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2025-05-31T05:03:27,192 copying build/lib/wgs_analysis/tables/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2025-05-31T05:03:27,195 copying build/lib/wgs_analysis/tables/gene_matrix.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2025-05-31T05:03:27,198 copying build/lib/wgs_analysis/tables/io.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2025-05-31T05:03:27,200 copying build/lib/wgs_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2025-05-31T05:03:27,202 copying build/lib/wgs_analysis/_version.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2025-05-31T05:03:27,204 creating build/bdist.linux-armv7l/wheel/wgs_analysis/data 2025-05-31T05:03:27,205 copying build/lib/wgs_analysis/data/GRCh38.fa.fai -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2025-05-31T05:03:27,207 copying build/lib/wgs_analysis/data/GRCh37-lite.fa.fai -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2025-05-31T05:03:27,210 copying build/lib/wgs_analysis/data/signatures_probabilities.tsv -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2025-05-31T05:03:27,214 creating build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2025-05-31T05:03:27,215 copying build/lib/wgs_analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/utils 2025-05-31T05:03:27,217 copying build/lib/wgs_analysis/utils/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/utils 2025-05-31T05:03:27,220 creating build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2025-05-31T05:03:27,221 copying build/lib/wgs_analysis/algorithms/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,224 copying build/lib/wgs_analysis/algorithms/merge.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,226 copying build/lib/wgs_analysis/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,228 copying build/lib/wgs_analysis/algorithms/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,230 copying build/lib/wgs_analysis/algorithms/position.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,232 copying build/lib/wgs_analysis/algorithms/tree.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2025-05-31T05:03:27,234 running install_egg_info 2025-05-31T05:03:27,271 running egg_info 2025-05-31T05:03:27,302 writing wgs_analysis.egg-info/PKG-INFO 2025-05-31T05:03:27,305 writing dependency_links to wgs_analysis.egg-info/dependency_links.txt 2025-05-31T05:03:27,307 writing top-level names to wgs_analysis.egg-info/top_level.txt 2025-05-31T05:03:27,346 reading manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2025-05-31T05:03:27,351 reading manifest template 'MANIFEST.in' 2025-05-31T05:03:27,356 writing manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2025-05-31T05:03:27,358 Copying wgs_analysis.egg-info to build/bdist.linux-armv7l/wheel/./wgs_analysis-0.0.7-py3.11.egg-info 2025-05-31T05:03:27,366 running install_scripts 2025-05-31T05:03:27,376 creating build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.7.dist-info/WHEEL 2025-05-31T05:03:27,378 creating '/tmp/pip-wheel-h5ec4grc/wgs_analysis-0.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-31T05:03:27,380 adding 'wgs_analysis/__init__.py' 2025-05-31T05:03:27,382 adding 'wgs_analysis/_version.py' 2025-05-31T05:03:27,384 adding 'wgs_analysis/refgenome.py' 2025-05-31T05:03:27,385 adding 'wgs_analysis/algorithms/__init__.py' 2025-05-31T05:03:27,387 adding 'wgs_analysis/algorithms/cnv.py' 2025-05-31T05:03:27,389 adding 'wgs_analysis/algorithms/merge.py' 2025-05-31T05:03:27,391 adding 'wgs_analysis/algorithms/position.py' 2025-05-31T05:03:27,393 adding 'wgs_analysis/algorithms/rearrangement.py' 2025-05-31T05:03:27,394 adding 'wgs_analysis/algorithms/tree.py' 2025-05-31T05:03:27,396 adding 'wgs_analysis/annotation/__init__.py' 2025-05-31T05:03:27,398 adding 'wgs_analysis/annotation/cnv.py' 2025-05-31T05:03:27,400 adding 'wgs_analysis/annotation/position.py' 2025-05-31T05:03:27,402 adding 'wgs_analysis/annotation/rearrangement.py' 2025-05-31T05:03:27,403 adding 'wgs_analysis/annotation/snv.py' 2025-05-31T05:03:27,406 adding 'wgs_analysis/data/GRCh37-lite.fa.fai' 2025-05-31T05:03:27,407 adding 'wgs_analysis/data/GRCh38.fa.fai' 2025-05-31T05:03:27,415 adding 'wgs_analysis/data/signatures_probabilities.tsv' 2025-05-31T05:03:27,417 adding 'wgs_analysis/experiments/__init__.py' 2025-05-31T05:03:27,419 adding 'wgs_analysis/experiments/blat_server.py' 2025-05-31T05:03:27,420 adding 'wgs_analysis/experiments/design_break_primers.py' 2025-05-31T05:03:27,422 adding 'wgs_analysis/experiments/design_experiment.py' 2025-05-31T05:03:27,425 adding 'wgs_analysis/experiments/design_primers.py' 2025-05-31T05:03:27,426 adding 'wgs_analysis/experiments/design_snv_primers.py' 2025-05-31T05:03:27,428 adding 'wgs_analysis/experiments/design_utils.py' 2025-05-31T05:03:27,429 adding 'wgs_analysis/plots/__init__.py' 2025-05-31T05:03:27,431 adding 'wgs_analysis/plots/circos.py' 2025-05-31T05:03:27,432 adding 'wgs_analysis/plots/clones.py' 2025-05-31T05:03:27,435 adding 'wgs_analysis/plots/cnv.py' 2025-05-31T05:03:27,437 adding 'wgs_analysis/plots/colors.py' 2025-05-31T05:03:27,438 adding 'wgs_analysis/plots/general.py' 2025-05-31T05:03:27,440 adding 'wgs_analysis/plots/heatmap.py' 2025-05-31T05:03:27,441 adding 'wgs_analysis/plots/positions.py' 2025-05-31T05:03:27,443 adding 'wgs_analysis/plots/rearrangement.py' 2025-05-31T05:03:27,445 adding 'wgs_analysis/plots/singlecell.py' 2025-05-31T05:03:27,447 adding 'wgs_analysis/plots/snv.py' 2025-05-31T05:03:27,449 adding 'wgs_analysis/plots/trees.py' 2025-05-31T05:03:27,450 adding 'wgs_analysis/plots/utils.py' 2025-05-31T05:03:27,452 adding 'wgs_analysis/snvs/__init__.py' 2025-05-31T05:03:27,454 adding 'wgs_analysis/snvs/mutsig.py' 2025-05-31T05:03:27,456 adding 'wgs_analysis/tables/__init__.py' 2025-05-31T05:03:27,458 adding 'wgs_analysis/tables/clones.py' 2025-05-31T05:03:27,460 adding 'wgs_analysis/tables/gene_matrix.py' 2025-05-31T05:03:27,461 adding 'wgs_analysis/tables/io.py' 2025-05-31T05:03:27,463 adding 'wgs_analysis/tables/trees.py' 2025-05-31T05:03:27,465 adding 'wgs_analysis/tests/__init__.py' 2025-05-31T05:03:27,466 adding 'wgs_analysis/tests/test_breakpoint_db.py' 2025-05-31T05:03:27,468 adding 'wgs_analysis/utils/__init__.py' 2025-05-31T05:03:27,469 adding 'wgs_analysis/utils/trees.py' 2025-05-31T05:03:27,471 adding 'wgs_analysis-0.0.7.dist-info/METADATA' 2025-05-31T05:03:27,472 adding 'wgs_analysis-0.0.7.dist-info/WHEEL' 2025-05-31T05:03:27,473 adding 'wgs_analysis-0.0.7.dist-info/top_level.txt' 2025-05-31T05:03:27,475 adding 'wgs_analysis-0.0.7.dist-info/RECORD' 2025-05-31T05:03:27,478 removing build/bdist.linux-armv7l/wheel 2025-05-31T05:03:27,601 Building wheel for wgs-analysis (setup.py): finished with status 'done' 2025-05-31T05:03:27,604 Created wheel for wgs-analysis: filename=wgs_analysis-0.0.7-py3-none-any.whl size=84381 sha256=d9889dd924e752b4889988bb3e706ae2b14454823a1a9e3917b2faa10478c7a9 2025-05-31T05:03:27,605 Stored in directory: /tmp/pip-ephem-wheel-cache-yokr9h7b/wheels/53/62/41/0240779837b9ac6711c7d5735e621a59b90ef2f54d1f9d4e1c 2025-05-31T05:03:27,615 Successfully built wgs-analysis 2025-05-31T05:03:27,621 Removed build tracker: '/tmp/pip-build-tracker-bi1r2wmb'