2025-06-01T13:07:44,424 Created temporary directory: /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:07:44,426 Initialized build tracking at /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:07:44,427 Created build tracker: /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:07:44,428 Entered build tracker: /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:07:44,430 Created temporary directory: /tmp/pip-wheel-8awu2uw6
2025-06-01T13:07:44,444 Created temporary directory: /tmp/pip-ephem-wheel-cache-nresztd3
2025-06-01T13:07:44,608 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-01T13:07:44,622 2 location(s) to search for versions of resolwe-bio:
2025-06-01T13:07:44,622 * https://pypi.org/simple/resolwe-bio/
2025-06-01T13:07:44,622 * https://www.piwheels.org/simple/resolwe-bio/
2025-06-01T13:07:44,624 Fetching project page and analyzing links: https://pypi.org/simple/resolwe-bio/
2025-06-01T13:07:44,625 Getting page https://pypi.org/simple/resolwe-bio/
2025-06-01T13:07:44,629 Found index url https://pypi.org/simple/
2025-06-01T13:07:45,305 Fetched page https://pypi.org/simple/resolwe-bio/ as application/vnd.pypi.simple.v1+json
2025-06-01T13:07:45,462   Link requires a different Python (3.11.2 not in: '>=3.6, <3.11'): https://files.pythonhosted.org/packages/ad/95/a4793259054276ae7dda756167f01c007f7581b92e1c5f8fa3cda29d042e/resolwe-bio-0.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-06-01T13:07:45,464   Skipping link: 0.0.0 Requires-Python >=3.6,<3.11: https://files.pythonhosted.org/packages/ad/95/a4793259054276ae7dda756167f01c007f7581b92e1c5f8fa3cda29d042e/resolwe-bio-0.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-06-01T13:07:45,465   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/95/de/73c1035653e8c125c76be9545eedbf3a41418b7638700ed9886d67d9fafc/resolwe_bio-0.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11)
2025-06-01T13:07:45,467   Found link https://files.pythonhosted.org/packages/b0/ae/1d6c2547f092bd996ee679b1533cce7cae3854eef9b7eb1b9332149f200a/resolwe-bio-1.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.0.0
2025-06-01T13:07:45,468   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/48/47/7a55fae40c66badbab7908c2e11d70adf6ba0611fe7b3bd608ebc0916a3a/resolwe_bio-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,470   Found link https://files.pythonhosted.org/packages/b7/48/4bb863f4ce66ca2672cce010bcaee96aafdb49c6e1e0053674a127f0b7b0/resolwe-bio-1.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.1.0
2025-06-01T13:07:45,471   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ed/f3/52b7868be10affa941d9991adf257142af1aa2790f2a29943bcfd637d441/resolwe_bio-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,473   Found link https://files.pythonhosted.org/packages/50/a4/a42ea25308515a97c788eb20fd90dc8c3e5957f0452d108da6867d7362be/resolwe-bio-1.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.2.0
2025-06-01T13:07:45,474   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/5c/78/be7031bc2af69322be03d07fa9f5e94a2d57466ca78d8ff6581b6727af7a/resolwe_bio-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,475   Found link https://files.pythonhosted.org/packages/c1/e8/0aa7b6d353e1a3d5a826d642b7d0cee29e81a0457ddd554c68afcc986ca0/resolwe-bio-1.2.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.2.1
2025-06-01T13:07:45,477   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/c1/f1/5681372bc6b3619201a8deb043902c701e1aaa572b2c241dd0f619d44eae/resolwe_bio-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,478   Found link https://files.pythonhosted.org/packages/6f/a8/ae64d668e83ddd1a193d75eeaf81c74a522484694e44b1a38ae86cf2d967/resolwe-bio-1.3.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.3.0
2025-06-01T13:07:45,479   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/9f/23/d547ddc184580ed53f3950c8bde84e88add48be1bf600d5f78a7db7cc2eb/resolwe_bio-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,481   Found link https://files.pythonhosted.org/packages/b3/a8/89b51a28bbc228c725b73484686f6e653855e2b6b7e461ca4a29e70b9295/resolwe-bio-1.4.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.4.0
2025-06-01T13:07:45,482   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/c7/aa/04e5b5463fdedb8ee8c95f4963ed30c314e3e9d3dbc0595d190ae7ddcd01/resolwe_bio-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,483   Found link https://files.pythonhosted.org/packages/3b/53/51e75ea37cdfd1d3fb6c512c25b4fc71023ee61b2e9f2a993e090fc6b755/resolwe-bio-1.4.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 1.4.1
2025-06-01T13:07:45,484   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ed/9c/1115261096cbd33d9edf52285b32150063b2e2dee35e46248fb704e8458c/resolwe_bio-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,486   Found link https://files.pythonhosted.org/packages/2c/54/06690b448f2baa5265e313a6b35d2f665c11fac89123b76a9140b0e107ee/resolwe-bio-2.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 2.0.0
2025-06-01T13:07:45,487   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/33/34/b0bc185bd85359e9250b48b836e6729fba8e0cf04a47f42ad4d4492cc766/resolwe_bio-2.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,492   Found link https://files.pythonhosted.org/packages/31/fd/d22b978b5dbb4a2941faac926484dcfb1180b9b97df07b6da5f6b07b0ec3/resolwe-bio-3.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.0.0
2025-06-01T13:07:45,493   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/1c/d2/17c98dcea7fa0d74843b4b3512e1c9273e356a99add2e87a2bc9c125cd3e/resolwe_bio-3.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,495   Found link https://files.pythonhosted.org/packages/13/e7/bfb8a11ccca36c345dc16d0f988ed4674fe2d2ffc0cb3119597008fd42ed/resolwe-bio-3.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.1.0
2025-06-01T13:07:45,496   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/e9/0c/f89721568b37e1cd5ab852e39891bb83ded44162446c30f334c2b302d44a/resolwe_bio-3.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,497   Found link https://files.pythonhosted.org/packages/5b/51/5f2086186bdc6e79f18c5f119c87cbfc5b1aba99b8f97dacc54da3268b3f/resolwe-bio-3.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 3.2.0
2025-06-01T13:07:45,498   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/f4/97/d4be02a40a526adf9ff61af2b00507bd0d7d25d1240878577c9d9c1ed8cd/resolwe_bio-3.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,500   Found link https://files.pythonhosted.org/packages/52/7a/3f9a6abee4e2745e3113553d499ba218f2267506e09274c10a42e04c06ee/resolwe-bio-4.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.0.0
2025-06-01T13:07:45,501   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/15/09/9e12acdaa52bef8848fba33474605c18ada1e4f2d817e21a9103b57e7988/resolwe_bio-4.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,502   Found link https://files.pythonhosted.org/packages/e6/57/ef94623e6f7301888ba42c73008d6318f098945d7a47b55dce17620e6a42/resolwe-bio-4.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.1.0a1
2025-06-01T13:07:45,503   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/f4/db/dc3edbf625ba604805fcf3930b676765df79e55be923ce9c6500037f29e3/resolwe_bio-4.1.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,505   Found link https://files.pythonhosted.org/packages/20/7b/352af47c1fd629de7198397d76533164f57615334aa99529a8a313797f05/resolwe-bio-4.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.1.0
2025-06-01T13:07:45,508   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/5e/a6/d67d02c4ead593ec0533fbe8f70974fc8481133431d42a20601918ea5b39/resolwe_bio-4.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,509   Found link https://files.pythonhosted.org/packages/1f/2c/34f8c5ed059c36874fa4632756e7709a1b63d5aff53662cd60a825486a3f/resolwe-bio-4.2.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.2.0a1
2025-06-01T13:07:45,511   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/62/6d/36d8c15472c5b3d3042a4fb3c6931c19ab43999d41212e6e8639bde7de6d/resolwe_bio-4.2.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,514   Found link https://files.pythonhosted.org/packages/71/b9/5a86bdbb715d8e82f8a9d92b85cdb857cbe57215181fd69fabaca9935f44/resolwe-bio-4.2.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 4.2.0
2025-06-01T13:07:45,516   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/d7/64/5a3a2b8c1ab91141a9ad79fbcdc5e240b0316098c8fd9681b534db211e91/resolwe_bio-4.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,517   Found link https://files.pythonhosted.org/packages/9c/65/bb2b788e8076e80d21ed99a9b0b913e02a3945f16ef2eab5ec41523200a8/resolwe-bio-5.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 5.0.0
2025-06-01T13:07:45,527   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/78/db/42757947fdc6af159bff593a866a5bda46fe6e055a0230ec8caee7fdb75a/resolwe_bio-5.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,528   Found link https://files.pythonhosted.org/packages/08/ab/b7c589a13d48f0396703c14af9473a7143324e01c0b7711f0a16fc8cc0c0/resolwe-bio-5.0.1.tar.gz (from https://pypi.org/simple/resolwe-bio/), version: 5.0.1
2025-06-01T13:07:45,529   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/b9/82/3b51311b69e96717b91f731f8eb0549ec496ba1a1ca397f8092f4abd981b/resolwe_bio-5.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/)
2025-06-01T13:07:45,531   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/f8/1c/0529423eba8c0148e57bad9cc420c318277fea638dafa36d153e3c889ff2/resolwe-bio-5.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,533   Skipping link: 5.1.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/f8/1c/0529423eba8c0148e57bad9cc420c318277fea638dafa36d153e3c889ff2/resolwe-bio-5.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,534   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/42/ef/607e6612de99c7aedf4abd4d11250aa3e410c9c7afc261e1342f0625b013/resolwe_bio-5.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,536   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/e5/e9/c7355a1c4cf6fec14135867686798030ef886b0603afaf90ea04a303d016/resolwe-bio-5.1.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,538   Skipping link: 5.1.0a2 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/e5/e9/c7355a1c4cf6fec14135867686798030ef886b0603afaf90ea04a303d016/resolwe-bio-5.1.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,539   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/1c/38/6fc26a0cbac16f39794aa79ee783cb77aff06d94ed05e953828e039ce8d2/resolwe_bio-5.1.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,541   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/b5/5d/4ebdd5f42878c251c99c00a082a5387f9d5e5afe50a04db53c9f91179a6a/resolwe-bio-6.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,546   Skipping link: 6.0.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/b5/5d/4ebdd5f42878c251c99c00a082a5387f9d5e5afe50a04db53c9f91179a6a/resolwe-bio-6.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,547   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/be/4f/b8fb275321692faf4720c92684cda1cb034e284cdfdb26204bf06f6ff9ff/resolwe_bio-6.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,548   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/1c/20/41ffca19f33c9fc245591aa48a25479333419d42c147a65fb9d0dbc4e41e/resolwe-bio-6.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,554   Skipping link: 6.0.0 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/1c/20/41ffca19f33c9fc245591aa48a25479333419d42c147a65fb9d0dbc4e41e/resolwe-bio-6.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,555   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/68/a3/25ff3567850cf97b95142fe1cef005c25410aed3a14921b5c8337dd8a610/resolwe_bio-6.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,556   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/65/c7/259bd54854d1750aa008278f8b02c8f700d30b518cb2d394dc6113c38af9/resolwe-bio-6.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,558   Skipping link: 6.1.0a1 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/65/c7/259bd54854d1750aa008278f8b02c8f700d30b518cb2d394dc6113c38af9/resolwe-bio-6.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,559   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/65/d2d1c811087c543c453f6acb23c04e79af346d7258b93f9051ce91c5fb57/resolwe_bio-6.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,569   Link requires a different Python (3.11.2 not in: '>=3.4, <3.6'): https://files.pythonhosted.org/packages/cb/e4/60a917b4b9fb6208188256447f7c60c1e0c40413758da13f2c1cbd645b95/resolwe-bio-6.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,570   Skipping link: 6.1.0 Requires-Python >=3.4,<3.6: https://files.pythonhosted.org/packages/cb/e4/60a917b4b9fb6208188256447f7c60c1e0c40413758da13f2c1cbd645b95/resolwe-bio-6.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
2025-06-01T13:07:45,571   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/a9/cc/64a3d8c8558028dea8f8bf76893ff110560f621a40baf190ddfa3364224c/resolwe_bio-6.1.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:>=3.4, <3.6)
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2025-06-01T13:07:47,729   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/9f/50/97c17dacaafe4900052f3f3ef48c7939c78eeef4ffec47c7777e13bfeb06/resolwe_bio-62.0.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,731   Found link https://files.pythonhosted.org/packages/30/93/2f5f51bc1aaa9ecaf5a0164267028557f0f0b0e795e28214c45d257f6030/resolwe_bio-62.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a2
2025-06-01T13:07:47,732   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/25/99/9d4b134da109df98d207417a363be80c582b58d6203c8e59813322fd3b96/resolwe_bio-62.0.0a3-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,734   Found link https://files.pythonhosted.org/packages/05/d2/ff95da6adac0fb8215df416630e6fa4a6420e4ed5fa52400fb8921f82944/resolwe_bio-62.0.0a3.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a3
2025-06-01T13:07:47,735   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/d4/a1/d9f532295b0522234038e0c8c71d7cb2331706917659378588fc7a3086c7/resolwe_bio-62.0.0a4-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,737   Found link https://files.pythonhosted.org/packages/b3/be/014846ca1f2ff8b38e974fcf3b9abd51f2a1b6a5745f70223e29de9b929b/resolwe_bio-62.0.0a4.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a4
2025-06-01T13:07:47,738   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/20/fd/cf9cb65f4bc61770476509aed97431449750b2dd612e59ea040b73fc8567/resolwe_bio-62.0.0a5-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,739   Found link https://files.pythonhosted.org/packages/20/8d/dbab6219600c0d99e7d109d90d586386426aadea2b1a80411acdb11d5c9f/resolwe_bio-62.0.0a5.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0a5
2025-06-01T13:07:47,740   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/01/95/c046a0588fc0732159765d94cf4343cb09e80dd3954936eb7bb7e0a2135f/resolwe_bio-62.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,742   Found link https://files.pythonhosted.org/packages/b7/84/9a9129f7e840b70773f21fc383269dd692964df6e3ff53c64665c2517219/resolwe_bio-62.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 62.0.0
2025-06-01T13:07:47,743   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/95/81/e0ea3bcddb4143469be8919233f31d7d1b42419a80c5fb0681ecbf76656a/resolwe_bio-63.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,744   Found link https://files.pythonhosted.org/packages/5a/1c/4252c35fb574d69751c265398fbe5c06595de3ba7b4ff5387dfba077e1ec/resolwe_bio-63.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a1
2025-06-01T13:07:47,745   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/23/16/68df8e3b0398c48025f0ae0cf2faf3385991d2f31cda23dede4126250c0c/resolwe_bio-63.0.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,747   Found link https://files.pythonhosted.org/packages/2a/74/db93a3e19fbd7697a26dc3568b252145deab8d96b612b948bd98ba8f862b/resolwe_bio-63.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a2
2025-06-01T13:07:47,748   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/90/74/358b242a5b5b9252323aaf0e5faa60ecce4ccdb1c027837f8265805245a9/resolwe_bio-63.0.0a3-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,749   Found link https://files.pythonhosted.org/packages/55/2a/6a84262d7814bc438b8e1d9480a6d47648f91ce93b6a128dce78cddb2c5b/resolwe_bio-63.0.0a3.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a3
2025-06-01T13:07:47,758   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/d9/861d98266e4485bbe0e9ee394f47c7730d635fad3ed95d213f1e4f025ea8/resolwe_bio-63.0.0a4-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,759   Found link https://files.pythonhosted.org/packages/ae/65/a6cd7cf59bed472e2158e29d6ec117596a6918d9bca868c8a56cedb6a723/resolwe_bio-63.0.0a4.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0a4
2025-06-01T13:07:47,761   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/39/20/c1cda0b1d0d18e4025f1ea6802d10b47a63ff9a07fed5c4d2260fc7fd8e3/resolwe_bio-63.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,762   Found link https://files.pythonhosted.org/packages/44/3a/7c34839513f4be3119b07926c7a73f6e15f26b1e447a92d3117893de7501/resolwe_bio-63.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.0.0
2025-06-01T13:07:47,763   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ef/63/ffa662707e75621eae721f1bea7c61ecc34313e77eb67595d0d69e9bc2d0/resolwe_bio-63.1.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,765   Found link https://files.pythonhosted.org/packages/ae/0d/63a44697b75290b0c646dec6ca5cd2e1158b36a31808ca59cc8ac5c5bfcc/resolwe_bio-63.1.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.1.0a1
2025-06-01T13:07:47,766   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/ee/08/633e78b20c63f93832418c9dd53d3f0d5b5555156fa2a7eeff568ae98968/resolwe_bio-63.1.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,767   Found link https://files.pythonhosted.org/packages/47/df/fb819ecf23f3486dd71d65a795c6e7abc22ea8d4886f8f28771cf20f8b59/resolwe_bio-63.1.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 63.1.0
2025-06-01T13:07:47,769   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/86/4e/88fc47d757b9ee3d393a005793f069158ebfacf8970aaf161ea478f10020/resolwe_bio-64.0.0a1-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,770   Found link https://files.pythonhosted.org/packages/f5/44/47228e8e0aeee840997458a756d030cfd5b811bbce93ea04887f30309080/resolwe_bio-64.0.0a1.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0a1
2025-06-01T13:07:47,771   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/6d/f6/257d3de72abdffad4cb34679a97f435eb8cc3a02cf2cadc0386832ad9dfd/resolwe_bio-64.0.0a2-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,773   Found link https://files.pythonhosted.org/packages/7a/dd/e2d4f70e50dc8b82844410885a1b02977871049e2ae71081d57bf0538f11/resolwe_bio-64.0.0a2.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0a2
2025-06-01T13:07:47,774   Skipping link: No binaries permitted for resolwe-bio: https://files.pythonhosted.org/packages/32/5d/4e97745dc216366e0a7b05deb9afa3e6c4cdefd7766bc62e2a959db3bdd4/resolwe_bio-64.0.0-py3-none-any.whl (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10)
2025-06-01T13:07:47,775   Found link https://files.pythonhosted.org/packages/61/25/2a3042b45c8b8236cd4e1e41c7c5dc9684833f10a1b8b7b39eeff787ea0e/resolwe_bio-64.0.0.tar.gz (from https://pypi.org/simple/resolwe-bio/) (requires-python:<3.14,>=3.10), version: 64.0.0
2025-06-01T13:07:47,777 Fetching project page and analyzing links: https://www.piwheels.org/simple/resolwe-bio/
2025-06-01T13:07:47,778 Getting page https://www.piwheels.org/simple/resolwe-bio/
2025-06-01T13:07:47,781 Found index url https://www.piwheels.org/simple/
2025-06-01T13:07:48,197 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-06-01T13:07:49,094 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-06-01T13:07:50,499 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-06-01T13:07:52,898 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-06-01T13:07:57,255 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/resolwe-bio/
2025-06-01T13:07:57,687 Could not fetch URL https://www.piwheels.org/simple/resolwe-bio/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/resolwe-bio/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-01T13:07:57,690 Skipping link: not a file: https://www.piwheels.org/simple/resolwe-bio/
2025-06-01T13:07:57,691 Skipping link: not a file: https://pypi.org/simple/resolwe-bio/
2025-06-01T13:07:57,761 Given no hashes to check 1 links for project 'resolwe-bio': discarding no candidates
2025-06-01T13:07:57,770 Collecting resolwe-bio==63.1.0
2025-06-01T13:07:57,790   Created temporary directory: /tmp/pip-unpack-bafrsm9_
2025-06-01T13:07:58,125   Downloading resolwe_bio-63.1.0.tar.gz (22.5 MB)
2025-06-01T13:08:09,079   Added resolwe-bio==63.1.0 from https://files.pythonhosted.org/packages/47/df/fb819ecf23f3486dd71d65a795c6e7abc22ea8d4886f8f28771cf20f8b59/resolwe_bio-63.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-k8d6l31t'
2025-06-01T13:08:09,097   Created temporary directory: /tmp/pip-build-env-gy44qyq9
2025-06-01T13:08:09,104   Installing build dependencies: started
2025-06-01T13:08:09,106   Running command pip subprocess to install build dependencies
2025-06-01T13:08:11,976   Using pip 25.2 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2025-06-01T13:08:11,977   Non-user install by explicit request
2025-06-01T13:08:13,180   Created build tracker: /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:08:13,182   Entered build tracker: /tmp/pip-build-tracker-k8d6l31t
2025-06-01T13:08:13,186   Created temporary directory: /tmp/pip-install-v9jsnt_w
2025-06-01T13:08:13,200   Created temporary directory: /tmp/pip-ephem-wheel-cache-4zsdpvag
2025-06-01T13:08:13,358   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-01T13:08:13,362   2 location(s) to search for versions of setuptools:
2025-06-01T13:08:13,363   * https://pypi.org/simple/setuptools/
2025-06-01T13:08:13,364   * https://www.piwheels.org/simple/setuptools/
2025-06-01T13:08:13,370   Fetching project page and analyzing links: https://pypi.org/simple/setuptools/
2025-06-01T13:08:13,373   Getting page https://pypi.org/simple/setuptools/
2025-06-01T13:08:13,383   Found index url https://pypi.org/simple/
2025-06-01T13:08:13,390   Looking up "https://pypi.org/simple/setuptools/" in the cache
2025-06-01T13:08:13,393   Request header has "max_age" as 0, cache bypassed
2025-06-01T13:08:13,414   Starting new HTTPS connection (1): pypi.org:443
2025-06-01T13:08:13,825   https://pypi.org:443 "GET /simple/setuptools/ HTTP/1.1" 304 0
2025-06-01T13:08:13,874   Fetched page https://pypi.org/simple/setuptools/ as application/vnd.pypi.simple.v1+json
2025-06-01T13:08:14,372     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/77/38/90cae8fd99c5dc402d25930e1c91f5fcf6de5c8e982fd152a5a061e3df56/setuptools-0.6b1-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,374     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1f/ab/1ed6131b5112d1d47cb89e1cbea08f783f0ed49d6fc795ed2ff63f84d20c/setuptools-0.6b1-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,375     Found link https://files.pythonhosted.org/packages/82/cb/906d051fdf1c8b7703d288d3cc44ff32746090378f7f8539c8476a21ce9a/setuptools-0.6b1.zip (from https://pypi.org/simple/setuptools/), version: 0.6b1
2025-06-01T13:08:14,377     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/61/52/c84d22f3669ea8d4e54126f6241d7ed9828e3a382596f170043dfdaddbcc/setuptools-0.6b2-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,398     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9b/87/48c155a10c4561fe9b8a83dcf9361ddb9cc9ab5c3ed1b504ac12ab11ed6a/setuptools-0.6b2-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,400     Found link https://files.pythonhosted.org/packages/0e/3b/53daeaf6623a2bab3d3c40b19a35ff5bd7c4e1fbad2f537a61c1fe8c5069/setuptools-0.6b2.zip (from https://pypi.org/simple/setuptools/), version: 0.6b2
2025-06-01T13:08:14,401     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c3/13/a3129905c118a7004e4bbc6db2c24d73de9e15960fd749a61e16fb114f30/setuptools-0.6b3-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,403     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/10/b3/7166e400d3b953fa4714f97806f077a3f7791cd48ea71df708814234283a/setuptools-0.6b3-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,404     Found link https://files.pythonhosted.org/packages/ff/33/635de67bf3010651ba8db9d8064721274bfb6fbb778a110089f34beabaf2/setuptools-0.6b3.zip (from https://pypi.org/simple/setuptools/), version: 0.6b3
2025-06-01T13:08:14,406     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1c/d7/6927233caddaa4f466a8b957c94be00810e751edb2655283c04fc3b680f2/setuptools-0.6b4-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,408     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b3/79/8c94b6c99192df5f5d900ce17405cb5cfcdab8643d2e4aaf6ce1ee948576/setuptools-0.6b4-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,409     Found link https://files.pythonhosted.org/packages/82/be/b2e51157a4debc4ebcab179aeb839948a0f02ce06cbc7749c8ab866c0aa9/setuptools-0.6b4.zip (from https://pypi.org/simple/setuptools/), version: 0.6b4
2025-06-01T13:08:14,411     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/54/f7/6f443db0df0a1706d8af3a8fa7d18528e5557f588cbddce7f7b47ff08ba5/setuptools-0.6c1-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,413     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/59/61/1ab6a87cec11ffb403280338aacc2c7a1e44eff0d7e431076fba1e61895e/setuptools-0.6c1-py2.4.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,414     Found link https://files.pythonhosted.org/packages/4e/2d/555dc3106b42c977a2f7c7e6f28e5b3104c9bd9306005d304d2ddc1c6587/setuptools-0.6c1.zip (from https://pypi.org/simple/setuptools/), version: 0.6c1
2025-06-01T13:08:14,416     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/24/01/51f2d3ede491f51990b99ab0bfc5bad473c9b45fcf9b1c7b8c7bc3ff0e14/setuptools-0.6c2-py2.3.egg (from https://pypi.org/simple/setuptools/)
2025-06-01T13:08:14,418     Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/c4/cb2718f8851517aba754c4f25d79f2a65430d4a4979375d78ea51f217123/setuptools-0.6c2-py2.4.egg (from https://pypi.org/simple/setuptools/)
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2025-06-01T13:08:32,900   WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/setuptools-scm/
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2025-06-01T13:08:34,173   WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/setuptools-scm/
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2025-06-01T13:08:42,239     Found link https://files.pythonhosted.org/packages/91/32/58bc30e646e55eab8b21abf89e353f59c0cc02c417e42929f4a9546e1b1d/packaging-19.0-py2.py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 19.0
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2025-06-01T13:08:42,245     Found link https://files.pythonhosted.org/packages/cf/94/9672c2d4b126e74c4496c6b3c58a8b51d6419267be9e70660ba23374c875/packaging-19.2-py2.py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 19.2
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2025-06-01T13:08:42,259     Found link https://files.pythonhosted.org/packages/d8/5b/3098db49a61ccc8583ffead6aedc226f08ff56dc03106b6ec54451e27a30/packaging-20.0-py2.py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 20.0
2025-06-01T13:08:42,260     Found link https://files.pythonhosted.org/packages/c7/cf/d84b72480a556d9bd4a191a91b0a8ea71cb48e6f6132f12d9d365c51bdb6/packaging-20.0.tar.gz (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 20.0
2025-06-01T13:08:42,262     Found link https://files.pythonhosted.org/packages/98/42/87c585dd3b113c775e65fd6b8d9d0a43abe1819c471d7af702d4e01e9b20/packaging-20.1-py2.py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 20.1
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2025-06-01T13:08:42,284     Found link https://files.pythonhosted.org/packages/0e/75/dc57e8d75c9f4e7ada4d30230875b66633e250504566bdb4d98615808cd1/packaging-20.5-py2.py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 20.5
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2025-06-01T13:08:42,379     Found link https://files.pythonhosted.org/packages/08/aa/cc0199a5f0ad350994d660967a8efb233fe0416e4639146c089643407ce6/packaging-24.1-py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 24.1
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2025-06-01T13:08:42,382     Found link https://files.pythonhosted.org/packages/88/ef/eb23f262cca3c0c4eb7ab1933c3b1f03d021f2c48f54763065b6f0e321be/packaging-24.2-py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 24.2
2025-06-01T13:08:42,383     Found link https://files.pythonhosted.org/packages/d0/63/68dbb6eb2de9cb10ee4c9c14a0148804425e13c4fb20d61cce69f53106da/packaging-24.2.tar.gz (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 24.2
2025-06-01T13:08:42,385     Found link https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 25.0
2025-06-01T13:08:42,386     Found link https://files.pythonhosted.org/packages/a1/d4/1fc4078c65507b51b96ca8f8c3ba19e6a61c8253c72794544580a7b6c24d/packaging-25.0.tar.gz (from https://pypi.org/simple/packaging/) (requires-python:>=3.8), version: 25.0
2025-06-01T13:08:42,398   Fetching project page and analyzing links: https://www.piwheels.org/simple/packaging/
2025-06-01T13:08:42,399   Getting page https://www.piwheels.org/simple/packaging/
2025-06-01T13:08:42,401   Found index url https://www.piwheels.org/simple/
2025-06-01T13:08:42,403   Looking up "https://www.piwheels.org/simple/packaging/" in the cache
2025-06-01T13:08:42,404   Request header has "max_age" as 0, cache bypassed
2025-06-01T13:08:42,418   No cache entry available
2025-06-01T13:08:42,420   Starting new HTTPS connection (13): www.piwheels.org:443
2025-06-01T13:08:42,824   Incremented Retry for (url='/simple/packaging/'): Retry(total=4, connect=None, read=None, redirect=None, status=None)
2025-06-01T13:08:42,826   WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-06-01T13:08:42,837   Starting new HTTPS connection (14): www.piwheels.org:443
2025-06-01T13:08:43,268   Incremented Retry for (url='/simple/packaging/'): Retry(total=3, connect=None, read=None, redirect=None, status=None)
2025-06-01T13:08:43,769   WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-06-01T13:08:43,771   Starting new HTTPS connection (15): www.piwheels.org:443
2025-06-01T13:08:44,189   Incremented Retry for (url='/simple/packaging/'): Retry(total=2, connect=None, read=None, redirect=None, status=None)
2025-06-01T13:08:45,191   WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-06-01T13:08:45,193   Starting new HTTPS connection (16): www.piwheels.org:443
2025-06-01T13:08:45,631   Incremented Retry for (url='/simple/packaging/'): Retry(total=1, connect=None, read=None, redirect=None, status=None)
2025-06-01T13:08:47,633   WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-06-01T13:08:47,634   Starting new HTTPS connection (17): www.piwheels.org:443
2025-06-01T13:08:48,088   Incremented Retry for (url='/simple/packaging/'): Retry(total=0, connect=None, read=None, redirect=None, status=None)
2025-06-01T13:08:52,090   WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/packaging/
2025-06-01T13:08:52,091   Starting new HTTPS connection (18): www.piwheels.org:443
2025-06-01T13:08:52,523   Could not fetch URL https://www.piwheels.org/simple/packaging/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/packaging/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-01T13:08:52,539   Skipping link: not a file: https://www.piwheels.org/simple/packaging/
2025-06-01T13:08:52,541   Skipping link: not a file: https://pypi.org/simple/packaging/
2025-06-01T13:08:52,556   Given no hashes to check 44 links for project 'packaging': discarding no candidates
2025-06-01T13:08:52,592   Collecting packaging>=20 (from setuptools_scm~=8.1.0)
2025-06-01T13:08:52,598     Obtaining dependency information for packaging>=20 from https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl.metadata
2025-06-01T13:08:52,619     Created temporary directory: /tmp/pip-unpack-l86z_kwz
2025-06-01T13:08:52,623     Looking up "https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl.metadata" in the cache
2025-06-01T13:08:52,630     Current age based on date: 0
2025-06-01T13:08:52,633     Ignoring unknown cache-control directive: immutable
2025-06-01T13:08:52,635     Freshness lifetime from max-age: 365000000
2025-06-01T13:08:52,637     The response is "fresh", returning cached response
2025-06-01T13:08:52,639     365000000 > 0
2025-06-01T13:08:52,649     Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
2025-06-01T13:08:52,655     Created temporary directory: /tmp/pip-metadata-2wsrrpsm
2025-06-01T13:08:52,698   Created temporary directory: /tmp/pip-unpack-ltqtgsxx
2025-06-01T13:08:52,702   Looking up "https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl" in the cache
2025-06-01T13:08:52,706   No cache entry available
2025-06-01T13:08:52,708   No cache entry available
2025-06-01T13:08:52,716   https://files.pythonhosted.org:443 "GET /packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl HTTP/1.1" 200 1224467
2025-06-01T13:08:52,734   Downloading setuptools-75.7.0-py3-none-any.whl (1.2 MB)
2025-06-01T13:08:52,916   Ignoring unknown cache-control directive: immutable
2025-06-01T13:08:52,917   Updating cache with response from "https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl"
2025-06-01T13:08:52,918   etag object cached for 1209600 seconds
2025-06-01T13:08:52,919   Caching due to etag
2025-06-01T13:08:52,979      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 7.0 MB/s  0:00:00
2025-06-01T13:08:53,014   Downloading link https://files.pythonhosted.org/packages/4e/6e/abdfaaf5c294c553e7a81cf5d801fbb4f53f5c5b6646de651f92a2667547/setuptools-75.7.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.9) to /tmp/pip-unpack-ltqtgsxx/setuptools-75.7.0-py3-none-any.whl
2025-06-01T13:08:53,015   Looking up "https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl" in the cache
2025-06-01T13:08:53,028   No cache entry available
2025-06-01T13:08:53,031   No cache entry available
2025-06-01T13:08:53,045   https://files.pythonhosted.org:443 "GET /packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl HTTP/1.1" 200 43666
2025-06-01T13:08:53,064   Downloading setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
2025-06-01T13:08:53,067   Ignoring unknown cache-control directive: immutable
2025-06-01T13:08:53,070   Updating cache with response from "https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl"
2025-06-01T13:08:53,072   etag object cached for 1209600 seconds
2025-06-01T13:08:53,074   Caching due to etag
2025-06-01T13:08:53,108   Downloading link https://files.pythonhosted.org/packages/a0/b9/1906bfeb30f2fc13bb39bf7ddb8749784c05faadbd18a21cf141ba37bff2/setuptools_scm-8.1.0-py3-none-any.whl (from https://pypi.org/simple/setuptools-scm/) (requires-python:>=3.8) to /tmp/pip-unpack-ltqtgsxx/setuptools_scm-8.1.0-py3-none-any.whl
2025-06-01T13:08:53,112   Looking up "https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl" in the cache
2025-06-01T13:08:53,140   Current age based on date: 0
2025-06-01T13:08:53,142   Ignoring unknown cache-control directive: immutable
2025-06-01T13:08:53,144   Freshness lifetime from max-age: 365000000
2025-06-01T13:08:53,146   The response is "fresh", returning cached response
2025-06-01T13:08:53,148   365000000 > 0
2025-06-01T13:08:53,169   Using cached packaging-25.0-py3-none-any.whl (66 kB)
2025-06-01T13:08:53,175   Downloading link https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl (from https://pypi.org/simple/packaging/) (requires-python:>=3.8) to /tmp/pip-unpack-ltqtgsxx/packaging-25.0-py3-none-any.whl
2025-06-01T13:08:55,261   Installing collected packages: setuptools, packaging, setuptools_scm

2025-06-01T13:08:57,188   Successfully installed packaging-25.0 setuptools-75.7.0 setuptools_scm-8.1.0
2025-06-01T13:08:57,189   Removed build tracker: '/tmp/pip-build-tracker-k8d6l31t'
2025-06-01T13:08:57,866   Installing build dependencies: finished with status 'done'
2025-06-01T13:08:57,872   Getting requirements to build wheel: started
2025-06-01T13:08:57,887   Running command Getting requirements to build wheel
2025-06-01T13:09:03,631   running egg_info
2025-06-01T13:09:03,647   writing resolwe_bio.egg-info/PKG-INFO
2025-06-01T13:09:03,673   writing dependency_links to resolwe_bio.egg-info/dependency_links.txt
2025-06-01T13:09:03,688   writing requirements to resolwe_bio.egg-info/requires.txt
2025-06-01T13:09:03,691   writing top-level names to resolwe_bio.egg-info/top_level.txt
2025-06-01T13:09:04,429   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-06-01T13:09:04,454   reading manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:04,672   reading manifest template 'MANIFEST.in'
2025-06-01T13:09:04,751   warning: no files found matching '.pylintrc'
2025-06-01T13:09:04,753   warning: no files found matching 'tests/docker-compose.yml'
2025-06-01T13:09:04,799   warning: no files found matching '*.yml' under directory 'tests'
2025-06-01T13:09:07,044   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-06-01T13:09:07,045   adding license file 'LICENSE'
2025-06-01T13:09:07,184   writing manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:07,442   Getting requirements to build wheel: finished with status 'done'
2025-06-01T13:09:07,449   Created temporary directory: /tmp/pip-modern-metadata-g52uoj3_
2025-06-01T13:09:07,453   Preparing metadata (pyproject.toml): started
2025-06-01T13:09:07,455   Running command Preparing metadata (pyproject.toml)
2025-06-01T13:09:10,541   running dist_info
2025-06-01T13:09:10,602   creating /tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info
2025-06-01T13:09:10,603   writing /tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/PKG-INFO
2025-06-01T13:09:10,660   writing dependency_links to /tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/dependency_links.txt
2025-06-01T13:09:10,674   writing requirements to /tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/requires.txt
2025-06-01T13:09:10,689   writing top-level names to /tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/top_level.txt
2025-06-01T13:09:10,692   writing manifest file '/tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:11,756   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-06-01T13:09:11,769   reading manifest file '/tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:11,772   reading manifest template 'MANIFEST.in'
2025-06-01T13:09:11,860   warning: no files found matching '.pylintrc'
2025-06-01T13:09:11,862   warning: no files found matching 'tests/docker-compose.yml'
2025-06-01T13:09:11,960   warning: no files found matching '*.yml' under directory 'tests'
2025-06-01T13:09:14,147   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-06-01T13:09:14,148   adding license file 'LICENSE'
2025-06-01T13:09:14,199   writing manifest file '/tmp/pip-modern-metadata-g52uoj3_/resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:14,206   creating '/tmp/pip-modern-metadata-g52uoj3_/resolwe_bio-63.1.0.dist-info'
2025-06-01T13:09:14,485   Preparing metadata (pyproject.toml): finished with status 'done'
2025-06-01T13:09:14,494   Source in /tmp/pip-wheel-8awu2uw6/resolwe-bio_547e72f597b146b8a4bc777a4c310df1 has version 63.1.0, which satisfies requirement resolwe-bio==63.1.0 from https://files.pythonhosted.org/packages/47/df/fb819ecf23f3486dd71d65a795c6e7abc22ea8d4886f8f28771cf20f8b59/resolwe_bio-63.1.0.tar.gz
2025-06-01T13:09:14,496   Removed resolwe-bio==63.1.0 from https://files.pythonhosted.org/packages/47/df/fb819ecf23f3486dd71d65a795c6e7abc22ea8d4886f8f28771cf20f8b59/resolwe_bio-63.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-k8d6l31t'
2025-06-01T13:09:14,552 Created temporary directory: /tmp/pip-unpack-by3rool5
2025-06-01T13:09:14,554 Created temporary directory: /tmp/pip-unpack-8nxg1k1p
2025-06-01T13:09:14,555 Building wheels for collected packages: resolwe-bio
2025-06-01T13:09:14,573   Created temporary directory: /tmp/pip-wheel-y4lxys0i
2025-06-01T13:09:14,574   Destination directory: /tmp/pip-wheel-y4lxys0i
2025-06-01T13:09:14,578   Building wheel for resolwe-bio (pyproject.toml): started
2025-06-01T13:09:14,683   Running command Building wheel for resolwe-bio (pyproject.toml)
2025-06-01T13:09:17,032   running bdist_wheel
2025-06-01T13:09:17,151   running build
2025-06-01T13:09:17,152   running build_py
2025-06-01T13:09:17,185   creating build/lib/resolwe_bio
2025-06-01T13:09:17,196   copying resolwe_bio/filters.py -> build/lib/resolwe_bio
2025-06-01T13:09:17,200   copying resolwe_bio/__init__.py -> build/lib/resolwe_bio
2025-06-01T13:09:17,204   copying resolwe_bio/models.py -> build/lib/resolwe_bio
2025-06-01T13:09:17,207   copying resolwe_bio/apps.py -> build/lib/resolwe_bio
2025-06-01T13:09:17,220   copying resolwe_bio/extensions.py -> build/lib/resolwe_bio
2025-06-01T13:09:17,225   creating build/lib/resolwe_bio/utils
2025-06-01T13:09:17,228   copying resolwe_bio/utils/__init__.py -> build/lib/resolwe_bio/utils
2025-06-01T13:09:17,233   copying resolwe_bio/utils/filter.py -> build/lib/resolwe_bio/utils
2025-06-01T13:09:17,237   copying resolwe_bio/utils/test.py -> build/lib/resolwe_bio/utils
2025-06-01T13:09:17,242   creating build/lib/resolwe_bio/tests
2025-06-01T13:09:17,244   copying resolwe_bio/tests/__init__.py -> build/lib/resolwe_bio/tests
2025-06-01T13:09:17,248   creating build/lib/resolwe_bio/kb
2025-06-01T13:09:17,250   copying resolwe_bio/kb/filters.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,253   copying resolwe_bio/kb/__init__.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,257   copying resolwe_bio/kb/backends.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,261   copying resolwe_bio/kb/listener_plugin.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,264   copying resolwe_bio/kb/views.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,269   copying resolwe_bio/kb/admin.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,273   copying resolwe_bio/kb/pagination.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,277   copying resolwe_bio/kb/models.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,282   copying resolwe_bio/kb/apps.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,285   copying resolwe_bio/kb/serializers.py -> build/lib/resolwe_bio/kb
2025-06-01T13:09:17,289   creating build/lib/resolwe_bio/process
2025-06-01T13:09:17,291   copying resolwe_bio/process/__init__.py -> build/lib/resolwe_bio/process
2025-06-01T13:09:17,295   copying resolwe_bio/process/runtime.py -> build/lib/resolwe_bio/process
2025-06-01T13:09:17,299   copying resolwe_bio/process/models.py -> build/lib/resolwe_bio/process
2025-06-01T13:09:17,305   creating build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,307   copying resolwe_bio/migrations/__init__.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,310   copying resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,314   copying resolwe_bio/migrations/0006_update_sql_methods.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,317   copying resolwe_bio/migrations/0002_metadata_table_type.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,320   copying resolwe_bio/migrations/0003_sample_indices.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,324   copying resolwe_bio/migrations/0005_remove_descriptor_indices.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,327   copying resolwe_bio/migrations/0004_merge_fastq_type.py -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:17,331   creating build/lib/resolwe_bio/variants
2025-06-01T13:09:17,333   copying resolwe_bio/variants/filters.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,337   copying resolwe_bio/variants/__init__.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,341   copying resolwe_bio/variants/listener_plugin.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,345   copying resolwe_bio/variants/views.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,349   copying resolwe_bio/variants/models.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,353   copying resolwe_bio/variants/apps.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,357   copying resolwe_bio/variants/serializers.py -> build/lib/resolwe_bio/variants
2025-06-01T13:09:17,361   creating build/lib/resolwe_bio/expression_filters
2025-06-01T13:09:17,363   copying resolwe_bio/expression_filters/__init__.py -> build/lib/resolwe_bio/expression_filters
2025-06-01T13:09:17,367   copying resolwe_bio/expression_filters/relation.py -> build/lib/resolwe_bio/expression_filters
2025-06-01T13:09:17,370   copying resolwe_bio/expression_filters/sample.py -> build/lib/resolwe_bio/expression_filters
2025-06-01T13:09:17,375   creating build/lib/resolwe_bio/tools
2025-06-01T13:09:17,377   copying resolwe_bio/tools/merge_chipqc_archive.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,381   copying resolwe_bio/tools/spikeins_report.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,384   copying resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,388   copying resolwe_bio/tools/xexpression.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,392   copying resolwe_bio/tools/mergebowtiestats.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,396   copying resolwe_bio/tools/plot_enhancers.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,400   copying resolwe_bio/tools/expression2storage.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,404   copying resolwe_bio/tools/unique_sample_names.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,409   copying resolwe_bio/tools/mergebowtie2stats_paired.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,413   copying resolwe_bio/tools/bamliquidator_table.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,417   copying resolwe_bio/tools/parse_library_type.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,420   copying resolwe_bio/tools/postprocess_snpeff.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,424   copying resolwe_bio/tools/mappability.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,428   copying resolwe_bio/tools/expressionmerge_archive.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,432   copying resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,436   copying resolwe_bio/tools/parse_diffexp.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,439   copying resolwe_bio/tools/create_gene_sets.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,443   copying resolwe_bio/tools/parse_encoding_type.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,446   copying resolwe_bio/tools/mergebowtie2stats.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,449   copying resolwe_bio/tools/expressionmerge.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,453   copying resolwe_bio/tools/spikein_pairwise.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,457   copying resolwe_bio/tools/utils.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,461   copying resolwe_bio/tools/gff3_to_gtf.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,464   copying resolwe_bio/tools/convert_DE_excel_table.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,467   copying resolwe_bio/tools/parse_cuffnorm.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,471   copying resolwe_bio/tools/star_sj_to_bed12.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,475   copying resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,479   copying resolwe_bio/tools/novel_splice_junctions.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,482   copying resolwe_bio/tools/cufflinks_sample_groups.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,486   copying resolwe_bio/tools/make_igv_session_archive.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,490   copying resolwe_bio/tools/cuffnorm_group_labels.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,493   copying resolwe_bio/tools/validate_fastq.py -> build/lib/resolwe_bio/tools
2025-06-01T13:09:17,501   creating build/lib/resolwe_bio/tests/unit
2025-06-01T13:09:17,502   copying resolwe_bio/tests/unit/test_expression_filters.py -> build/lib/resolwe_bio/tests/unit
2025-06-01T13:09:17,507   copying resolwe_bio/tests/unit/__init__.py -> build/lib/resolwe_bio/tests/unit
2025-06-01T13:09:17,510   copying resolwe_bio/tests/unit/test_api.py -> build/lib/resolwe_bio/tests/unit
2025-06-01T13:09:17,513   copying resolwe_bio/tests/unit/test_tools.py -> build/lib/resolwe_bio/tests/unit
2025-06-01T13:09:17,518   creating build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,520   copying resolwe_bio/tests/workflows/test_geo_import.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,524   copying resolwe_bio/tests/workflows/test_fusion_calling_arriba.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,528   copying resolwe_bio/tests/workflows/__init__.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,531   copying resolwe_bio/tests/workflows/test_atac_seq.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,535   copying resolwe_bio/tests/workflows/test_wgs.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,540   copying resolwe_bio/tests/workflows/test_rna_seq.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,547   copying resolwe_bio/tests/workflows/test_chemut.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,551   copying resolwe_bio/tests/workflows/test_wes.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,555   copying resolwe_bio/tests/workflows/test_cut_and_run.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,559   copying resolwe_bio/tests/workflows/test_mirna.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,563   copying resolwe_bio/tests/workflows/test_wgbs.py -> build/lib/resolwe_bio/tests/workflows
2025-06-01T13:09:17,569   creating build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,571   copying resolwe_bio/tests/processes/test_samtools.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,576   copying resolwe_bio/tests/processes/test_files_to_reads.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,580   copying resolwe_bio/tests/processes/test_chipseq.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,586   copying resolwe_bio/tests/processes/__init__.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,590   copying resolwe_bio/tests/processes/test_ml_ready.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,595   copying resolwe_bio/tests/processes/test_junctions.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,600   copying resolwe_bio/tests/processes/test_wgs.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,604   copying resolwe_bio/tests/processes/test_arriba.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,608   copying resolwe_bio/tests/processes/test_annotation.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,613   copying resolwe_bio/tests/processes/test_expression.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,619   copying resolwe_bio/tests/processes/test_enrichment.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,623   copying resolwe_bio/tests/processes/test_metadata_upload.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,627   copying resolwe_bio/tests/processes/test_pca.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,631   copying resolwe_bio/tests/processes/test_support_processors.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,638   copying resolwe_bio/tests/processes/test_alignment.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,644   copying resolwe_bio/tests/processes/test_processor.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,648   copying resolwe_bio/tests/processes/test_import.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,652   copying resolwe_bio/tests/processes/test_reads_filtering.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,659   copying resolwe_bio/tests/processes/test_microarray.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,663   copying resolwe_bio/tests/processes/test_upload.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,669   copying resolwe_bio/tests/processes/test_variant_calling.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,676   copying resolwe_bio/tests/processes/test_clustering.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,687   copying resolwe_bio/tests/processes/test_diff_expression.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,692   copying resolwe_bio/tests/processes/test_expression_aggregator.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,696   copying resolwe_bio/tests/processes/test_plots.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,700   copying resolwe_bio/tests/processes/test_wgbs.py -> build/lib/resolwe_bio/tests/processes
2025-06-01T13:09:17,905   creating build/lib/resolwe_bio/kb/tests
2025-06-01T13:09:17,908   copying resolwe_bio/kb/tests/__init__.py -> build/lib/resolwe_bio/kb/tests
2025-06-01T13:09:17,913   copying resolwe_bio/kb/tests/test_feature.py -> build/lib/resolwe_bio/kb/tests
2025-06-01T13:09:17,920   copying resolwe_bio/kb/tests/test_import_kb.py -> build/lib/resolwe_bio/kb/tests
2025-06-01T13:09:17,928   copying resolwe_bio/kb/tests/test_mapping.py -> build/lib/resolwe_bio/kb/tests
2025-06-01T13:09:17,948   creating build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,956   copying resolwe_bio/kb/migrations/0005_species.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,973   copying resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,977   copying resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,980   copying resolwe_bio/kb/migrations/0014_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,984   copying resolwe_bio/kb/migrations/0003_add_map_index.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,988   copying resolwe_bio/kb/migrations/0001_initial.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,993   copying resolwe_bio/kb/migrations/0013_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:17,997   copying resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,002   copying resolwe_bio/kb/migrations/__init__.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,007   copying resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,013   copying resolwe_bio/kb/migrations/0009_full_text_search.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,019   copying resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,026   copying resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,035   copying resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,048   copying resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,063   copying resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:18,073   creating build/lib/resolwe_bio/kb/management
2025-06-01T13:09:18,075   copying resolwe_bio/kb/management/__init__.py -> build/lib/resolwe_bio/kb/management
2025-06-01T13:09:18,080   creating build/lib/resolwe_bio/kb/management/commands
2025-06-01T13:09:18,082   copying resolwe_bio/kb/management/commands/insert_mappings.py -> build/lib/resolwe_bio/kb/management/commands
2025-06-01T13:09:18,086   copying resolwe_bio/kb/management/commands/__init__.py -> build/lib/resolwe_bio/kb/management/commands
2025-06-01T13:09:18,090   copying resolwe_bio/kb/management/commands/insert_features.py -> build/lib/resolwe_bio/kb/management/commands
2025-06-01T13:09:18,110   copying resolwe_bio/kb/management/commands/utils.py -> build/lib/resolwe_bio/kb/management/commands
2025-06-01T13:09:18,115   creating build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,117   copying resolwe_bio/processes/samtools/samtools_depth.py -> build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,122   copying resolwe_bio/processes/samtools/samtools_coverage.py -> build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,126   copying resolwe_bio/processes/samtools/samtools_bedcov.py -> build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,148   copying resolwe_bio/processes/samtools/samtools_mpileup.py -> build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,153   copying resolwe_bio/processes/samtools/samtools_view.py -> build/lib/resolwe_bio/processes/samtools
2025-06-01T13:09:18,158   creating build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:18,160   copying resolwe_bio/processes/WGBS/walt_index.py -> build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:18,165   copying resolwe_bio/processes/WGBS/bsrate.py -> build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:18,178   creating build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,180   copying resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,187   copying resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,191   copying resolwe_bio/processes/workflows/geo_import.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,196   copying resolwe_bio/processes/workflows/wgs_gvcf.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,201   copying resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,223   copying resolwe_bio/processes/workflows/bbduk_star.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,229   copying resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,236   copying resolwe_bio/processes/workflows/quantseq.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,240   copying resolwe_bio/processes/workflows/cut_and_run.py -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:18,259   creating build/lib/resolwe_bio/processes/microarray
2025-06-01T13:09:18,261   copying resolwe_bio/processes/microarray/methylation_arrays.py -> build/lib/resolwe_bio/processes/microarray
2025-06-01T13:09:18,266   copying resolwe_bio/processes/microarray/microarray_expression.py -> build/lib/resolwe_bio/processes/microarray
2025-06-01T13:09:18,270   copying resolwe_bio/processes/microarray/map_probes.py -> build/lib/resolwe_bio/processes/microarray
2025-06-01T13:09:18,276   creating build/lib/resolwe_bio/processes/fusion_calling
2025-06-01T13:09:18,278   copying resolwe_bio/processes/fusion_calling/arriba.py -> build/lib/resolwe_bio/processes/fusion_calling
2025-06-01T13:09:18,284   creating build/lib/resolwe_bio/processes/clustering
2025-06-01T13:09:18,286   copying resolwe_bio/processes/clustering/find_similar.py -> build/lib/resolwe_bio/processes/clustering
2025-06-01T13:09:18,301   copying resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/lib/resolwe_bio/processes/clustering
2025-06-01T13:09:18,307   copying resolwe_bio/processes/clustering/pca.py -> build/lib/resolwe_bio/processes/clustering
2025-06-01T13:09:18,311   copying resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/lib/resolwe_bio/processes/clustering
2025-06-01T13:09:18,317   creating build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,319   copying resolwe_bio/processes/reads_processing/trimgalore.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,325   copying resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,328   copying resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,333   copying resolwe_bio/processes/reads_processing/bamclipper.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,337   copying resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,342   copying resolwe_bio/processes/reads_processing/xengsort.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,347   copying resolwe_bio/processes/reads_processing/markduplicates.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,351   copying resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,355   copying resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,360   copying resolwe_bio/processes/reads_processing/bbduk.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,366   copying resolwe_bio/processes/reads_processing/bqsr.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,370   copying resolwe_bio/processes/reads_processing/split_ncigar.py -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:18,375   creating build/lib/resolwe_bio/processes/annotation
2025-06-01T13:09:18,378   copying resolwe_bio/processes/annotation/variant_annotation.py -> build/lib/resolwe_bio/processes/annotation
2025-06-01T13:09:18,384   creating build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,387   copying resolwe_bio/processes/support_processors/multiqc.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,393   copying resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,397   copying resolwe_bio/processes/support_processors/qorts_qc.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,401   copying resolwe_bio/processes/support_processors/umi_tools.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,406   copying resolwe_bio/processes/support_processors/bam_conversion.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,411   copying resolwe_bio/processes/support_processors/seqtk.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,415   copying resolwe_bio/processes/support_processors/rnaseqc_qc.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,420   copying resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,425   copying resolwe_bio/processes/support_processors/wgs_metrics.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,429   copying resolwe_bio/processes/support_processors/gtf_to_bed.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,434   copying resolwe_bio/processes/support_processors/alignment_summary.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,438   copying resolwe_bio/processes/support_processors/mutations_table.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,443   copying resolwe_bio/processes/support_processors/merge_samples.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,447   copying resolwe_bio/processes/support_processors/insert_size.py -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:18,453   creating build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,456   copying resolwe_bio/processes/import_data/expressions.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,461   copying resolwe_bio/processes/import_data/metadata.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,465   copying resolwe_bio/processes/import_data/geneset.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,470   copying resolwe_bio/processes/import_data/annotation_bedpe.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,474   copying resolwe_bio/processes/import_data/nucleotide_seq.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,479   copying resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,483   copying resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,487   copying resolwe_bio/processes/import_data/sra_file.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,492   copying resolwe_bio/processes/import_data/ml_ready_reference.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,497   copying resolwe_bio/processes/import_data/basespace.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,502   copying resolwe_bio/processes/import_data/seq_reads.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,508   copying resolwe_bio/processes/import_data/methylation_array_idat.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,512   copying resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:18,517   creating build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:18,519   copying resolwe_bio/processes/expression/expression_aggregator.py -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:18,525   copying resolwe_bio/processes/expression/featureCounts.py -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:18,531   copying resolwe_bio/processes/expression/salmon.py -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:18,536   copying resolwe_bio/processes/expression/star_quantification.py -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:18,543   creating build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:18,545   copying resolwe_bio/processes/chip_seq/rose2.py -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:18,550   copying resolwe_bio/processes/chip_seq/macs2.py -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:18,557   copying resolwe_bio/processes/chip_seq/chipqc.py -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:18,564   creating build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,566   copying resolwe_bio/processes/alignment/hisat2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,571   copying resolwe_bio/processes/alignment/bwamem2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,575   copying resolwe_bio/processes/alignment/star_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,580   copying resolwe_bio/processes/alignment/bowtie2_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,584   copying resolwe_bio/processes/alignment/bowtie_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,588   copying resolwe_bio/processes/alignment/star.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,594   copying resolwe_bio/processes/alignment/bwa_index.py -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:18,599   creating build/lib/resolwe_bio/processes/differential_expression
2025-06-01T13:09:18,602   copying resolwe_bio/processes/differential_expression/edgeR.py -> build/lib/resolwe_bio/processes/differential_expression
2025-06-01T13:09:18,607   copying resolwe_bio/processes/differential_expression/deseq.py -> build/lib/resolwe_bio/processes/differential_expression
2025-06-01T13:09:18,612   copying resolwe_bio/processes/differential_expression/cuffdiff.py -> build/lib/resolwe_bio/processes/differential_expression
2025-06-01T13:09:18,618   creating build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,620   copying resolwe_bio/processes/variant_calling/vc_chemut.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,625   copying resolwe_bio/processes/variant_calling/variants_to_table.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,630   copying resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,634   copying resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,639   copying resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,643   copying resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,648   copying resolwe_bio/processes/variant_calling/vqsr.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,653   copying resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,659   copying resolwe_bio/processes/variant_calling/snpeff.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,664   copying resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,669   copying resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,674   copying resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,679   copying resolwe_bio/processes/variant_calling/gatk4.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,692   copying resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,705   copying resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/lib/resolwe_bio/processes/variant_calling
2025-06-01T13:09:18,717   creating build/lib/resolwe_bio/processes/go_enrichment
2025-06-01T13:09:18,723   copying resolwe_bio/processes/go_enrichment/go.py -> build/lib/resolwe_bio/processes/go_enrichment
2025-06-01T13:09:18,737   creating build/lib/resolwe_bio/variants/tests
2025-06-01T13:09:18,742   copying resolwe_bio/variants/tests/__init__.py -> build/lib/resolwe_bio/variants/tests
2025-06-01T13:09:18,755   copying resolwe_bio/variants/tests/test_process.py -> build/lib/resolwe_bio/variants/tests
2025-06-01T13:09:18,766   copying resolwe_bio/variants/tests/test_variant.py -> build/lib/resolwe_bio/variants/tests
2025-06-01T13:09:18,812   creating build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,815   copying resolwe_bio/variants/migrations/0001_initial.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,822   copying resolwe_bio/variants/migrations/__init__.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,828   copying resolwe_bio/variants/migrations/0005_alter_variantannotation_clinical_diagnosis.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,834   copying resolwe_bio/variants/migrations/0009_alter_variant_alternative_alter_variant_reference.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,839   copying resolwe_bio/variants/migrations/0002_rename_unfiltered_allele_depth_variantcall_alternative_allele_depth.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,843   copying resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,847   copying resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,852   copying resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,856   copying resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,860   copying resolwe_bio/variants/migrations/0008_alter_variantannotation_clinical_diagnosis_and_more.py -> build/lib/resolwe_bio/variants/migrations
2025-06-01T13:09:18,882   running egg_info
2025-06-01T13:09:18,948   writing resolwe_bio.egg-info/PKG-INFO
2025-06-01T13:09:18,989   writing dependency_links to resolwe_bio.egg-info/dependency_links.txt
2025-06-01T13:09:19,002   writing requirements to resolwe_bio.egg-info/requires.txt
2025-06-01T13:09:19,019   writing top-level names to resolwe_bio.egg-info/top_level.txt
2025-06-01T13:09:19,987   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2025-06-01T13:09:20,009   reading manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:20,207   reading manifest template 'MANIFEST.in'
2025-06-01T13:09:20,287   warning: no files found matching '.pylintrc'
2025-06-01T13:09:20,288   warning: no files found matching 'tests/docker-compose.yml'
2025-06-01T13:09:20,339   warning: no files found matching '*.yml' under directory 'tests'
2025-06-01T13:09:22,666   no previously-included directories found matching 'resolwe_bio/tests/files/large'
2025-06-01T13:09:22,667   adding license file 'LICENSE'
2025-06-01T13:09:22,818   writing manifest file 'resolwe_bio.egg-info/SOURCES.txt'
2025-06-01T13:09:23,473   creating build/lib/resolwe_bio/descriptors
2025-06-01T13:09:23,475   copying resolwe_bio/descriptors/geneset.yml -> build/lib/resolwe_bio/descriptors
2025-06-01T13:09:23,480   copying resolwe_bio/descriptors/reads.yml -> build/lib/resolwe_bio/descriptors
2025-06-01T13:09:23,484   copying resolwe_bio/descriptors/diffexp.yml -> build/lib/resolwe_bio/descriptors
2025-06-01T13:09:23,489   copying resolwe_bio/descriptors/dicty_time_series.yml -> build/lib/resolwe_bio/descriptors
2025-06-01T13:09:23,495   creating build/lib/resolwe_bio/fixtures
2025-06-01T13:09:23,504   copying resolwe_bio/fixtures/relationtypes.yaml -> build/lib/resolwe_bio/fixtures
2025-06-01T13:09:23,508   copying resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:23,513   copying resolwe_bio/kb/migrations/triggers_feature_2.sql -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:23,518   copying resolwe_bio/kb/migrations/triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations
2025-06-01T13:09:23,522   copying resolwe_bio/migrations/remove_resolwe_indexes.sql -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:23,528   copying resolwe_bio/migrations/resolwe_indexes_2.sql -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:23,533   copying resolwe_bio/migrations/resolwe_indexes_3.sql -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:23,538   copying resolwe_bio/migrations/resolwe_indexes.sql -> build/lib/resolwe_bio/migrations
2025-06-01T13:09:23,544   copying resolwe_bio/processes/WGBS/hmr.yml -> build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:23,550   copying resolwe_bio/processes/WGBS/walt.yml -> build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:23,568   copying resolwe_bio/processes/WGBS/methcounts.yml -> build/lib/resolwe_bio/processes/WGBS
2025-06-01T13:09:23,573   creating build/lib/resolwe_bio/processes/junctions
2025-06-01T13:09:23,575   copying resolwe_bio/processes/junctions/regtools.yml -> build/lib/resolwe_bio/processes/junctions
2025-06-01T13:09:23,580   copying resolwe_bio/processes/workflows/wgbs.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,586   copying resolwe_bio/processes/workflows/wgs.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,591   copying resolwe_bio/processes/workflows/corall.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,596   copying resolwe_bio/processes/workflows/wes.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,601   copying resolwe_bio/processes/workflows/atac_seq.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,607   copying resolwe_bio/processes/workflows/chemut.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,610   copying resolwe_bio/processes/workflows/mirna.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,614   copying resolwe_bio/processes/workflows/chip_seq.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,621   copying resolwe_bio/processes/workflows/cuffquant.yml -> build/lib/resolwe_bio/processes/workflows
2025-06-01T13:09:23,624   creating build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,627   copying resolwe_bio/processes/unit_tests/test_basic_fields.yml -> build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,631   copying resolwe_bio/processes/unit_tests/test_disabled_fields.yml -> build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,636   copying resolwe_bio/processes/unit_tests/test_list.yml -> build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,640   copying resolwe_bio/processes/unit_tests/test_sleep_progress.yml -> build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,644   copying resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/lib/resolwe_bio/processes/unit_tests
2025-06-01T13:09:23,649   copying resolwe_bio/processes/reads_processing/cutadapt.yml -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:23,654   copying resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/lib/resolwe_bio/processes/reads_processing
2025-06-01T13:09:23,663   copying resolwe_bio/processes/annotation/abstract.yml -> build/lib/resolwe_bio/processes/annotation
2025-06-01T13:09:23,667   copying resolwe_bio/processes/support_processors/archive.yml -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:23,672   copying resolwe_bio/processes/support_processors/library_strandedness.yml -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:23,676   copying resolwe_bio/processes/support_processors/gff_to_gtf.yml -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:23,681   copying resolwe_bio/processes/support_processors/spikeins_qc.yml -> build/lib/resolwe_bio/processes/support_processors
2025-06-01T13:09:23,685   copying resolwe_bio/processes/import_data/mappability_tab.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,690   copying resolwe_bio/processes/import_data/go_obo.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,694   copying resolwe_bio/processes/import_data/bam.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,699   copying resolwe_bio/processes/import_data/annotation.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,704   copying resolwe_bio/processes/import_data/abstract_bed.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,708   copying resolwe_bio/processes/import_data/cuffquant.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,712   copying resolwe_bio/processes/import_data/variants_vcf.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,715   copying resolwe_bio/processes/import_data/differential_exp.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,720   copying resolwe_bio/processes/import_data/go_gaf.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,724   copying resolwe_bio/processes/import_data/annotation_bed.yml -> build/lib/resolwe_bio/processes/import_data
2025-06-01T13:09:23,728   copying resolwe_bio/processes/expression/abstract.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,732   copying resolwe_bio/processes/expression/dicty_bcm.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,736   copying resolwe_bio/processes/expression/salmon_index.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,740   copying resolwe_bio/processes/expression/merge_expressions.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,745   copying resolwe_bio/processes/expression/cuffquant.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,749   copying resolwe_bio/processes/expression/mappability.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,753   copying resolwe_bio/processes/expression/cuffnorm.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,758   copying resolwe_bio/processes/expression/cufflinks.yml -> build/lib/resolwe_bio/processes/expression
2025-06-01T13:09:23,763   copying resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:23,768   copying resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:23,772   copying resolwe_bio/processes/chip_seq/macs14.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:23,776   copying resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml -> build/lib/resolwe_bio/processes/chip_seq
2025-06-01T13:09:23,781   creating build/lib/resolwe_bio/processes/plots
2025-06-01T13:09:23,783   copying resolwe_bio/processes/plots/bamplot.yml -> build/lib/resolwe_bio/processes/plots
2025-06-01T13:09:23,788   copying resolwe_bio/processes/plots/bamliquidator.yml -> build/lib/resolwe_bio/processes/plots
2025-06-01T13:09:23,792   copying resolwe_bio/processes/alignment/abstract.yml -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:23,795   copying resolwe_bio/processes/alignment/bowtie.yml -> build/lib/resolwe_bio/processes/alignment
2025-06-01T13:09:23,801   copying resolwe_bio/processes/alignment/bwamem2.yml -> build/lib/resolwe_bio/processes/alignment
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2025-06-01T13:09:25,370   creating build/lib/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:25,373   copying resolwe_bio/tests/files/report_variants/output/ensembl_variants.tsv -> build/lib/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:25,377   copying resolwe_bio/tests/files/report_variants/output/mutations_KRAS.tsv -> build/lib/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:25,381   copying resolwe_bio/tests/files/report_variants/output/mutations_clinvar.tsv -> build/lib/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:25,386   copying resolwe_bio/tests/files/report_variants/output/no_mutations.tsv -> build/lib/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:25,390   creating build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,392   copying resolwe_bio/tests/files/report_variants/input/KRAS_annotated.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,396   copying resolwe_bio/tests/files/report_variants/input/KRAS_mutation.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,401   copying resolwe_bio/tests/files/report_variants/input/chr12_KRAS_sorted.bam -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,408   copying resolwe_bio/tests/files/report_variants/input/empty.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,412   copying resolwe_bio/tests/files/report_variants/input/ensembl.bam -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,416   copying resolwe_bio/tests/files/report_variants/input/ensembl.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,421   copying resolwe_bio/tests/files/report_variants/input/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,426   copying resolwe_bio/tests/files/report_variants/input/filtered_variants_clinvar.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,430   copying resolwe_bio/tests/files/report_variants/input/no_mutation.vcf.gz -> build/lib/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:25,434   creating build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,437   copying resolwe_bio/tests/files/samtools/inputs/regions.txt -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,441   copying resolwe_bio/tests/files/samtools/inputs/regions_bed.bed -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,445   copying resolwe_bio/tests/files/samtools/inputs/samtools_in.bam -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,450   copying resolwe_bio/tests/files/samtools/inputs/samtools_in.bam.bai -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,456   copying resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,461   copying resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam.bai -> build/lib/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:25,467   creating build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,469   copying resolwe_bio/tests/files/samtools/outputs/bedfile.bam_stats.txt -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,473   copying resolwe_bio/tests/files/samtools/outputs/coverage_multi.tsv -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,477   copying resolwe_bio/tests/files/samtools/outputs/coverage_single.tsv -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,481   copying resolwe_bio/tests/files/samtools/outputs/regions.bam_stats.txt -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,485   copying resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,489   copying resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage_mean.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,493   copying resolwe_bio/tests/files/samtools/outputs/samtools_bed.bam -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,498   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_counts.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,502   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_depth.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,506   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,510   copying resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup_2.txt.gz -> build/lib/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:25,513   creating build/lib/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:25,516   copying resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_index.bai -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:25,520   copying resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_stats.txt -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:25,525   copying resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:25,528   copying resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam.bai -> build/lib/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:25,532   creating build/lib/resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:25,533   copying resolwe_bio/tests/files/test_bam/input/alignment_bam_upload_index.bam.bai -> build/lib/resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:25,537   copying resolwe_bio/tests/files/test_bam/input/alignment_name_sorted.bam -> build/lib/resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:25,541   creating build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,544   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bai -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,548   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,555   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,559   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,563   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam.bai -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,568   copying resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_recalibration.table -> build/lib/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:25,575   creating build/lib/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:25,577   copying resolwe_bio/tests/files/bqsr/input/TP53.bed -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:25,581   copying resolwe_bio/tests/files/bqsr/input/dbsnp_STK11.vcf.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:25,585   copying resolwe_bio/tests/files/bqsr/input/dbsnp_TP53.vcf.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:25,590   copying resolwe_bio/tests/files/bqsr/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/lib/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:25,678   creating build/lib/resolwe_bio/tests/files/variant_refinement/output
2025-06-01T13:09:25,681   copying resolwe_bio/tests/files/variant_refinement/output/variants.refined.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/output
2025-06-01T13:09:25,686   creating build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:25,688   copying resolwe_bio/tests/files/variant_refinement/input/chrX_1_28000.fa.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:25,693   copying resolwe_bio/tests/files/variant_refinement/input/chrX_28000.renamed.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:25,699   copying resolwe_bio/tests/files/variant_refinement/input/snp.recalibrated_chrX_28000.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:25,703   creating build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,706   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,711   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_paired_reads_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,715   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_single_reads_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,719   copying resolwe_bio/tests/files/test_bowtie/output/bowtie_use_SE_report.tab.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,724   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,728   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,732   copying resolwe_bio/tests/files/test_bowtie/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:25,736   creating build/lib/resolwe_bio/tests/files/test_bowtie/input
2025-06-01T13:09:25,738   copying resolwe_bio/tests/files/test_bowtie/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie/input
2025-06-01T13:09:25,742   creating build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,745   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,750   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants_mask.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,755   copying resolwe_bio/tests/files/variant_filtration/output/filtered_variants_multi_sample.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,759   copying resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,763   copying resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants_multi.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:25,767   creating build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:25,769   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000.fasta.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:25,773   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:25,777   copying resolwe_bio/tests/files/variant_filtration/input/chr1_19000_multi_sample.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:25,782   creating build/lib/resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:25,785   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:25,788   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:25,792   copying resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_single_end.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:25,796   creating build/lib/resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:25,798   copying resolwe_bio/tests/files/seqtk/input/hs_paired_R1_workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:25,803   copying resolwe_bio/tests/files/seqtk/input/hs_paired_R2_workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:25,807   copying resolwe_bio/tests/files/seqtk/input/hs_single_bbduk_star_htseq_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:25,811   creating build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,814   copying resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R1_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,818   copying resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R2_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,822   copying resolwe_bio/tests/files/test_fastq_upload/output/Test_S1_L001_R1_001_merged.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,826   copying resolwe_bio/tests/files/test_fastq_upload/output/merged_single_end_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,830   copying resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,835   copying resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,839   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,842   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw_single.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,846   copying resolwe_bio/tests/files/test_fastq_upload/output/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:25,849   creating build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,851   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,855   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,858   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,862   copying resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,866   copying resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,870   copying resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,874   copying resolwe_bio/tests/files/test_fastq_upload/input/empty.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,877   copying resolwe_bio/tests/files/test_fastq_upload/input/garbage.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,881   copying resolwe_bio/tests/files/test_fastq_upload/input/garbage2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,885   copying resolwe_bio/tests/files/test_fastq_upload/input/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,889   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,893   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1_diff_num_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,897   copying resolwe_bio/tests/files/test_fastq_upload/input/mate1_reordered.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,901   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,905   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2_diff_num_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,909   copying resolwe_bio/tests/files/test_fastq_upload/input/mate2_reordered.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,913   copying resolwe_bio/tests/files/test_fastq_upload/input/missing_qual.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,917   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,921   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,925   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,930   copying resolwe_bio/tests/files/test_fastq_upload/input/old_encoding_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,933   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,938   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,942   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,946   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,950   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,954   copying resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fq.gz -> build/lib/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:25,957   creating build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,960   copying resolwe_bio/tests/files/chemut/output/GATKvariants_raw.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,964   copying resolwe_bio/tests/files/chemut/output/chemut.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,968   copying resolwe_bio/tests/files/chemut/output/indel_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,972   copying resolwe_bio/tests/files/chemut/output/snv_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,976   copying resolwe_bio/tests/files/chemut/output/variant_filtered.txt -> build/lib/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:25,980   creating build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:25,982   copying resolwe_bio/tests/files/chemut/input/AX4_mate1.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:25,987   copying resolwe_bio/tests/files/chemut/input/AX4_mate2.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:25,993   copying resolwe_bio/tests/files/chemut/input/CM_mate1.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:25,999   copying resolwe_bio/tests/files/chemut/input/CM_mate2.fq.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:26,006   copying resolwe_bio/tests/files/chemut/input/chemut_genome.fasta.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:26,009   copying resolwe_bio/tests/files/chemut/input/dd_chr1.fasta.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:26,014   copying resolwe_bio/tests/files/chemut/input/variant_calling_filtering.vcf.gz -> build/lib/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:26,017   creating build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,020   copying resolwe_bio/tests/files/test_upload_expression/output/cuffquant_exp_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,024   copying resolwe_bio/tests/files/test_upload_expression/output/exp.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,028   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,032   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_norm.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,036   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,040   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions3.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,044   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions5.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,049   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,053   copying resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,058   copying resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,061   copying resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,065   copying resolwe_bio/tests/files/test_upload_expression/output/mm_ncbi_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,069   copying resolwe_bio/tests/files/test_upload_expression/output/upload_exp_norm_set.json.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:26,074   creating build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,076   copying resolwe_bio/tests/files/test_upload_expression/input/cuffquant_exp.tab -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,080   copying resolwe_bio/tests/files/test_upload_expression/input/exp.1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,084   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,088   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.xlsx.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,091   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,095   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,099   copying resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tsv.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,103   copying resolwe_bio/tests/files/test_upload_expression/input/exp_mac_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,107   copying resolwe_bio/tests/files/test_upload_expression/input/exp_unix_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,111   copying resolwe_bio/tests/files/test_upload_expression/input/exp_windows_line_ending.txt.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,115   copying resolwe_bio/tests/files/test_upload_expression/input/mm_ncbi_exp.tab.gz -> build/lib/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:26,119   creating build/lib/resolwe_bio/tests/files/chipqc/output
2025-06-01T13:09:26,122   copying resolwe_bio/tests/files/chipqc/output/PeakProfile_mqc.png -> build/lib/resolwe_bio/tests/files/chipqc/output
2025-06-01T13:09:26,129   creating build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,132   copying resolwe_bio/tests/files/chipqc/input/SRR5675973_chr17_peaks.xls -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,137   copying resolwe_bio/tests/files/chipqc/input/SRR5675976_chr17.bam -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,176   copying resolwe_bio/tests/files/chipqc/input/macs14_case_duplicated.bam -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,182   copying resolwe_bio/tests/files/chipqc/input/macs14_peaks.bed.gz -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,186   copying resolwe_bio/tests/files/chipqc/input/postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:26,190   creating build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,193   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_cpm.tab.g -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,197   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,201   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,204   copying resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,209   copying resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,213   copying resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_rc.tab.gz -> build/lib/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:26,217   creating build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,220   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,224   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.meth.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,228   copying resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.mr.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,235   copying resolwe_bio/tests/files/wgbs/output/Escherichia_phage_bsrate.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,240   copying resolwe_bio/tests/files/wgbs/output/genome.fasta -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,244   copying resolwe_bio/tests/files/wgbs/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,248   copying resolwe_bio/tests/files/wgbs/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,252   copying resolwe_bio/tests/files/wgbs/output/methconts_report.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,257   copying resolwe_bio/tests/files/wgbs/output/walt_index.tar.gz -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,273   copying resolwe_bio/tests/files/wgbs/output/walt_report.txt -> build/lib/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:26,277   creating build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,278   copying resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,285   copying resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,291   copying resolwe_bio/tests/files/wgbs/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,295   copying resolwe_bio/tests/files/wgbs/input/hg19_chr2 17k.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,300   copying resolwe_bio/tests/files/wgbs/input/spike_in_lambda.mr.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,306   copying resolwe_bio/tests/files/wgbs/input/unmethylated_lambda_J02459.fasta.gz -> build/lib/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:26,311   creating build/lib/resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:26,313   copying resolwe_bio/tests/files/bam_processing/output/reads.SInorm.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:26,317   copying resolwe_bio/tests/files/bam_processing/output/reads.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:26,321   copying resolwe_bio/tests/files/bam_processing/output/reads_2.bigwig -> build/lib/resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:26,325   creating build/lib/resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:26,327   copying resolwe_bio/tests/files/bam_processing/input/reads.bedpe -> build/lib/resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:26,331   copying resolwe_bio/tests/files/bam_processing/input/scaffold_418_subset.bed -> build/lib/resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:26,334   creating build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,337   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,341   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,345   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,349   copying resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R2_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,353   copying resolwe_bio/tests/files/basespace_import/output/single_S1_L001_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,357   copying resolwe_bio/tests/files/basespace_import/output/single_S1_L002_R1_001.fastq.gz -> build/lib/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:26,361   creating build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,364   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_chr2_17k_paired.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,369   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_alignment_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,373   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_insert_size_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,377   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_rrbs_summary_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,381   copying resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_wgs_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:26,385   creating build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:26,387   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_alignment_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:26,391   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_chr2_17k_single.hmr.gz -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:26,395   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:26,400   copying resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_wgs_metrics.txt -> build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:26,404   creating build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:26,407   copying resolwe_bio/tests/files/salmon_quant/output/salmon_counts.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:26,411   copying resolwe_bio/tests/files/salmon_quant/output/salmon_quant_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:26,416   copying resolwe_bio/tests/files/salmon_quant/output/salmon_transcripts_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:26,420   copying resolwe_bio/tests/files/salmon_quant/output/variance_salmon.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:26,423   creating build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:26,425   copying resolwe_bio/tests/files/salmon_quant/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:26,429   copying resolwe_bio/tests/files/salmon_quant/input/hs cdna.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:26,433   copying resolwe_bio/tests/files/salmon_quant/input/hs sim_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:26,438   creating build/lib/resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:26,441   copying resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_dicty.json.gz -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:26,445   copying resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_mouse.json.gz -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:26,449   copying resolwe_bio/tests/files/goenrichment/output/mapped_ids.txt -> build/lib/resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:26,453   creating build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,455   copying resolwe_bio/tests/files/goenrichment/input/gaf_dicty_cropped.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,459   copying resolwe_bio/tests/files/goenrichment/input/gaf_mgi_cropped.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,463   copying resolwe_bio/tests/files/goenrichment/input/go.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,467   copying resolwe_bio/tests/files/goenrichment/input/goa_human.gaf.txt.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,471   copying resolwe_bio/tests/files/goenrichment/input/ontology_dicty_cropped.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,475   copying resolwe_bio/tests/files/goenrichment/input/ontology_mus_cropped.obo.gz -> build/lib/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:26,479   creating build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,482   copying resolwe_bio/tests/files/xengsort/output/classification_stats_paired.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,486   copying resolwe_bio/tests/files/xengsort/output/classification_stats_single.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,490   copying resolwe_bio/tests/files/xengsort/output/graft_reads_1.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,494   copying resolwe_bio/tests/files/xengsort/output/graft_reads_2.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,499   copying resolwe_bio/tests/files/xengsort/output/graft_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,503   copying resolwe_bio/tests/files/xengsort/output/index_stats.txt -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,507   copying resolwe_bio/tests/files/xengsort/output/xgensort_index.tar.gz -> build/lib/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:26,512   creating build/lib/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:26,515   copying resolwe_bio/tests/files/xengsort/input/SRR9130497_100_1.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:26,519   copying resolwe_bio/tests/files/xengsort/input/SRR9130497_100_2.fastq.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:26,524   copying resolwe_bio/tests/files/xengsort/input/hsa_GRCh38_chr8_127735500-127736500.fasta.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:26,528   copying resolwe_bio/tests/files/xengsort/input/mmu_GRCm38_chr15_61857500-61858500.fasta.gz -> build/lib/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:26,533   creating build/lib/resolwe_bio/tests/files/annotation_bedpe/input
2025-06-01T13:09:26,536   copying resolwe_bio/tests/files/annotation_bedpe/input/alk.bedpe -> build/lib/resolwe_bio/tests/files/annotation_bedpe/input
2025-06-01T13:09:26,540   creating build/lib/resolwe_bio/tests/files/trimgalore/inputs
2025-06-01T13:09:26,542   copying resolwe_bio/tests/files/trimgalore/inputs/illumina_universal_adapters.fasta.gz -> build/lib/resolwe_bio/tests/files/trimgalore/inputs
2025-06-01T13:09:26,547   creating build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:26,549   copying resolwe_bio/tests/files/trimgalore/outputs/mate1_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:26,553   copying resolwe_bio/tests/files/trimgalore/outputs/mate2_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:26,558   creating build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,561   copying resolwe_bio/tests/files/test_featurecounts/inputs/annotation_rsem.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,565   copying resolwe_bio/tests/files/test_featurecounts/inputs/bam_with_read_group.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,570   copying resolwe_bio/tests/files/test_featurecounts/inputs/cuffquant_mapping.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,576   copying resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,581   copying resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs_paired.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,591   copying resolwe_bio/tests/files/test_featurecounts/inputs/hg19_chr20_small_modified.gtf.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,595   copying resolwe_bio/tests/files/test_featurecounts/inputs/paired_lanes.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,600   copying resolwe_bio/tests/files/test_featurecounts/inputs/reads.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,605   copying resolwe_bio/tests/files/test_featurecounts/inputs/salmon_cds.fa.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,609   copying resolwe_bio/tests/files/test_featurecounts/inputs/single_lanes.bam -> build/lib/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:26,614   creating build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,616   copying resolwe_bio/tests/files/test_featurecounts/outputs/auto_detect_strand_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,620   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_exp_set.json.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,624   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_cpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,628   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,632   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,637   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,641   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,645   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc_with_rg.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,649   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,653   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,658   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,662   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_paired_lanes_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,665   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_per_lane_rc.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,670   copying resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_single_lanes_rc.tab.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,674   copying resolwe_bio/tests/files/test_featurecounts/outputs/per_lane_rc.txt.gz -> build/lib/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:26,678   creating build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:26,680   copying resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_paired_stats.txt -> build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:26,684   copying resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_stats.txt -> build/lib/resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:26,688   creating build/lib/resolwe_bio/tests/files/test_subsample_align/input
2025-06-01T13:09:26,690   copying resolwe_bio/tests/files/test_subsample_align/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_subsample_align/input
2025-06-01T13:09:26,694   creating build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,697   copying resolwe_bio/tests/files/bbduk/output/bbduk_fw_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,701   copying resolwe_bio/tests/files/bbduk/output/bbduk_rv_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,705   copying resolwe_bio/tests/files/bbduk/output/bbduk_test_reads_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,709   copying resolwe_bio/tests/files/bbduk/output/fw_reads_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,713   copying resolwe_bio/tests/files/bbduk/output/rRNA_forw_preprocessed.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:26,717   creating build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,719   copying resolwe_bio/tests/files/bbduk/input/barcodes.fasta -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,723   copying resolwe_bio/tests/files/bbduk/input/bbduk_adapters.fasta -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,728   copying resolwe_bio/tests/files/bbduk/input/bbduk_test_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,732   copying resolwe_bio/tests/files/bbduk/input/rRNA_forw.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,736   copying resolwe_bio/tests/files/bbduk/input/rRNA_rew.fastq.gz -> build/lib/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:26,739   creating build/lib/resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:26,742   copying resolwe_bio/tests/files/qorts/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:26,746   copying resolwe_bio/tests/files/qorts/input/hs paired.bam -> build/lib/resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:26,749   copying resolwe_bio/tests/files/qorts/input/salmon_cds.fa.gz -> build/lib/resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:26,753   creating build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,756   copying resolwe_bio/tests/files/test_bwa/output/bwa-mem2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,761   copying resolwe_bio/tests/files/test_bwa/output/bwa_bt_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,765   copying resolwe_bio/tests/files/test_bwa/output/bwa_bt_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,768   copying resolwe_bio/tests/files/test_bwa/output/bwa_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,773   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem1_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,777   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem1_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,781   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,784   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,788   copying resolwe_bio/tests/files/test_bwa/output/bwa_mem_unmapped_reads.fastq.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,792   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_mapped.bam -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,797   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,801   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_mapped.bam -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,805   copying resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,809   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,813   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,816   copying resolwe_bio/tests/files/test_bwa/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:26,820   creating build/lib/resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:26,822   copying resolwe_bio/tests/files/test_bwa/input/bwa-mem2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:26,827   copying resolwe_bio/tests/files/test_bwa/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:26,831   creating build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:26,833   copying resolwe_bio/tests/files/test_alignmentsieve/output/filtered_max_149_stats.txt -> build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:26,837   copying resolwe_bio/tests/files/test_alignmentsieve/output/filtered_min_150_stats.txt -> build/lib/resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:26,842   creating build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,844   copying resolwe_bio/tests/files/wgs/output/cohort_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,849   copying resolwe_bio/tests/files/wgs/output/combined_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,852   copying resolwe_bio/tests/files/wgs/output/selected_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,856   copying resolwe_bio/tests/files/wgs/output/selected_variants_filtered.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,860   copying resolwe_bio/tests/files/wgs/output/variants.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,864   copying resolwe_bio/tests/files/wgs/output/variants_from_workflow.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,869   copying resolwe_bio/tests/files/wgs/output/wgs_preprocess_bam_stats.txt -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,873   copying resolwe_bio/tests/files/wgs/output/wgs_preprocess_markdups_metrics.txt -> build/lib/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:26,877   creating build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,879   copying resolwe_bio/tests/files/wgs/input/TP53.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,883   copying resolwe_bio/tests/files/wgs/input/TP53_1.fastq.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,889   copying resolwe_bio/tests/files/wgs/input/TP53_2.fastq.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,896   copying resolwe_bio/tests/files/wgs/input/TP53_aligned_reads.bam -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,904   copying resolwe_bio/tests/files/wgs/input/analysis_ready.bam -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,910   copying resolwe_bio/tests/files/wgs/input/chr17_single_interval.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,914   copying resolwe_bio/tests/files/wgs/input/dbsnp_STK11.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,918   copying resolwe_bio/tests/files/wgs/input/dbsnp_TP53.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,923   copying resolwe_bio/tests/files/wgs/input/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,927   copying resolwe_bio/tests/files/wgs/input/hg38.intervals.bed -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:26,931   copying resolwe_bio/tests/files/wgs/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,018   copying resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,023   copying resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz.tbi -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,027   copying resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,031   copying resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz.tbi -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,035   copying resolwe_bio/tests/files/wgs/input/vcf_1.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,039   copying resolwe_bio/tests/files/wgs/input/vcf_2.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:27,044   creating build/lib/resolwe_bio/tests/files/variants_to_table/output
2025-06-01T13:09:27,046   copying resolwe_bio/tests/files/variants_to_table/output/variants_to_table.tsv -> build/lib/resolwe_bio/tests/files/variants_to_table/output
2025-06-01T13:09:27,050   creating build/lib/resolwe_bio/tests/files/variants_to_table/input
2025-06-01T13:09:27,052   copying resolwe_bio/tests/files/variants_to_table/input/refined_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variants_to_table/input
2025-06-01T13:09:27,057   creating build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,061   copying resolwe_bio/tests/files/metadata_upload/inputs/empty.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,064   copying resolwe_bio/tests/files/metadata_upload/inputs/iris_legacy.TAB -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,071   copying resolwe_bio/tests/files/metadata_upload/inputs/mixed_case_sufix.TsV -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,075   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,078   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.xlsx -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,083   copying resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable_one_to_many.tsv -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,088   copying resolwe_bio/tests/files/metadata_upload/inputs/upper_case_sufix.TSV -> build/lib/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:27,091   creating build/lib/resolwe_bio/tests/files/workflow_cutnrun/output
2025-06-01T13:09:27,094   copying resolwe_bio/tests/files/workflow_cutnrun/output/normalized.bigwig -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/output
2025-06-01T13:09:27,099   creating build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:27,101   copying resolwe_bio/tests/files/workflow_cutnrun/input/GRCh38_chr1_1_1M.fasta.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:27,115   copying resolwe_bio/tests/files/workflow_cutnrun/input/mate1.fq.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:27,130   copying resolwe_bio/tests/files/workflow_cutnrun/input/mate2.fq.gz -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:27,148   copying resolwe_bio/tests/files/workflow_cutnrun/input/promoters_hsapiens_grch38_ensembl_109_small.bed -> build/lib/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:27,154   creating build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,157   copying resolwe_bio/tests/files/test_star/output/ReadsPerGene.out.tab.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,171   copying resolwe_bio/tests/files/test_star/output/exp_summary.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,175   copying resolwe_bio/tests/files/test_star/output/hs_paired_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,179   copying resolwe_bio/tests/files/test_star/output/hs_single_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,183   copying resolwe_bio/tests/files/test_star/output/paired_lanes_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,187   copying resolwe_bio/tests/files/test_star/output/single_lanes_stats.txt -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,191   copying resolwe_bio/tests/files/test_star/output/star_single_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,210   copying resolwe_bio/tests/files/test_star/output/star_tpm.tab.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,214   copying resolwe_bio/tests/files/test_star/output/workflow_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,219   copying resolwe_bio/tests/files/test_star/output/workflow_expressions_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:27,224   creating build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,226   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,232   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,239   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,247   copying resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,262   copying resolwe_bio/tests/files/test_star/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,265   copying resolwe_bio/tests/files/test_star/input/hs genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,270   copying resolwe_bio/tests/files/test_star/input/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,274   copying resolwe_bio/tests/files/test_star/input/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,279   copying resolwe_bio/tests/files/test_star/input/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:27,285   creating build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:27,291   copying resolwe_bio/tests/files/upload_microarray/output/GSM971958.json.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:27,297   copying resolwe_bio/tests/files/upload_microarray/output/GSM971958_expressions.txt.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:27,301   creating build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:27,306   copying resolwe_bio/tests/files/upload_microarray/input/GSM971957_mapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:27,310   copying resolwe_bio/tests/files/upload_microarray/input/GSM971957_unmapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:27,317   creating build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:27,320   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_1_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:27,328   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_2_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:27,332   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_3_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:27,336   copying resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_4_norm.txt.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:27,340   creating build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:27,342   copying resolwe_bio/tests/files/test_nanostring_deseq2/outputs/count_matrix.tab.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:27,346   copying resolwe_bio/tests/files/test_nanostring_deseq2/outputs/de_data_deseq.json.gz -> build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:27,350   creating build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,352   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,356   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,360   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,363   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,367   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2_partial_match.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,371   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,375   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h_2.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,378   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_constant_8h.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,381   copying resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_different_genes.txt.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:27,385   creating build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:27,387   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:27,391   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_euclidean.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:27,394   copying resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_genes.json.gz -> build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:27,398   creating build/lib/resolwe_bio/tests/files/ml_ready/output
2025-06-01T13:09:27,401   copying resolwe_bio/tests/files/ml_ready/output/features.json.gz -> build/lib/resolwe_bio/tests/files/ml_ready/output
2025-06-01T13:09:27,404   creating build/lib/resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:27,406   copying resolwe_bio/tests/files/ml_ready/input/exp_matrix.tsv -> build/lib/resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:27,410   copying resolwe_bio/tests/files/ml_ready/input/preprocessor.pickle -> build/lib/resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:27,413   creating build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:27,415   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.gatkHC4.vcf.gz -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:27,419   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:27,424   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam.bai -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:27,428   copying resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:27,431   creating build/lib/resolwe_bio/tests/files/haplotypecaller/input
2025-06-01T13:09:27,433   copying resolwe_bio/tests/files/haplotypecaller/input/56G_masterfile_test_merged_targets_5col.bed -> build/lib/resolwe_bio/tests/files/haplotypecaller/input
2025-06-01T13:09:27,436   creating build/lib/resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:27,439   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:27,446   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam.bai -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:27,450   copying resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam_stats.txt -> build/lib/resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:27,454   creating build/lib/resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:27,456   copying resolwe_bio/tests/files/bamclipper/input/TP53.bam -> build/lib/resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:27,464   copying resolwe_bio/tests/files/bamclipper/input/TP53.bedpe -> build/lib/resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:27,468   creating build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,470   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,474   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,478   copying resolwe_bio/tests/files/test_hisat2/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,482   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,487   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_paired_report.txt -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,491   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_report.txt -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,494   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,498   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_1.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,501   copying resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_2.fastq.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:27,505   creating build/lib/resolwe_bio/tests/files/test_hisat2/input
2025-06-01T13:09:27,507   copying resolwe_bio/tests/files/test_hisat2/input/g.enome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_hisat2/input
2025-06-01T13:09:27,511   creating build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:27,513   copying resolwe_bio/tests/files/rnaseqc/output/chr1_region.bam.metrics_ENSEMBL.tsv -> build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:27,517   copying resolwe_bio/tests/files/rnaseqc/output/chr1_region_ucsc.bam.metrics_UCSC.tsv -> build/lib/resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:27,521   creating build/lib/resolwe_bio/tests/files/geo_import/inputs
2025-06-01T13:09:27,524   copying resolwe_bio/tests/files/geo_import/inputs/HuGene-2_0-st_mapping.tsv.gz -> build/lib/resolwe_bio/tests/files/geo_import/inputs
2025-06-01T13:09:27,538   creating build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,540   copying resolwe_bio/tests/files/geo_import/outputs/ERR019653.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,543   copying resolwe_bio/tests/files/geo_import/outputs/GSE166144_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,548   copying resolwe_bio/tests/files/geo_import/outputs/GSE172293_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,552   copying resolwe_bio/tests/files/geo_import/outputs/GSE176232_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,557   copying resolwe_bio/tests/files/geo_import/outputs/GSE24998_metadata.tsv -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,562   copying resolwe_bio/tests/files/geo_import/outputs/GSM5252014_mapped_exp.tsv.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,572   copying resolwe_bio/tests/files/geo_import/outputs/SRR13627912.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,577   copying resolwe_bio/tests/files/geo_import/outputs/SRR14743655.fastq.gz -> build/lib/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:27,580   creating build/lib/resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:27,584   copying resolwe_bio/tests/files/salmon_workflow/output/paired_end_exp.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:27,588   copying resolwe_bio/tests/files/salmon_workflow/output/single_end_exp.txt.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:27,592   creating build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,594   copying resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_globin_reference.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,600   copying resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_rRNA.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,620   copying resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,624   copying resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,627   copying resolwe_bio/tests/files/salmon_workflow/input/hs cdna.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,631   copying resolwe_bio/tests/files/salmon_workflow/input/hs genome.fasta.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,635   copying resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads1.fastq.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,639   copying resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads2.fastq.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,643   copying resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads_single.fastq.gz -> build/lib/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:27,649   creating build/lib/resolwe_bio/tests/files/wgs_workflow/output
2025-06-01T13:09:27,651   copying resolwe_bio/tests/files/wgs_workflow/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/wgs_workflow/output
2025-06-01T13:09:27,655   creating build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,658   copying resolwe_bio/tests/files/corall/output/corall_workfow_expression_paired.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,662   copying resolwe_bio/tests/files/corall/output/corall_workfow_expression_single.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,665   copying resolwe_bio/tests/files/corall/output/dedup_paired_stats.txt -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,669   copying resolwe_bio/tests/files/corall/output/dedup_single_stats.txt -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,674   copying resolwe_bio/tests/files/corall/output/mate1_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,678   copying resolwe_bio/tests/files/corall/output/mate2_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,683   copying resolwe_bio/tests/files/corall/output/single_trimmed.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,687   copying resolwe_bio/tests/files/corall/output/stringtie_exp_set.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,691   copying resolwe_bio/tests/files/corall/output/stringtie_tpm.txt.gz -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,695   copying resolwe_bio/tests/files/corall/output/stringtie_transcripts.ctab -> build/lib/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:27,698   creating build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,700   copying resolwe_bio/tests/files/corall/input/Homo_sapiens_globin_reference.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,707   copying resolwe_bio/tests/files/corall/input/Homo_sapiens_rRNA.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,711   copying resolwe_bio/tests/files/corall/input/corall_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,715   copying resolwe_bio/tests/files/corall/input/corall_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,719   copying resolwe_bio/tests/files/corall/input/corall_paired.bam -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,723   copying resolwe_bio/tests/files/corall/input/corall_single.bam -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,727   copying resolwe_bio/tests/files/corall/input/corall_single.fastq.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,732   copying resolwe_bio/tests/files/corall/input/hs_annotation_chr2_1_45000.gtf.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,736   copying resolwe_bio/tests/files/corall/input/hs_genome_chr2_1_45000.fasta.gz -> build/lib/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:27,740   creating build/lib/resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:27,743   copying resolwe_bio/tests/files/arriba/output/expected_discarded_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:27,746   copying resolwe_bio/tests/files/arriba/output/expected_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:27,750   creating build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,752   copying resolwe_bio/tests/files/arriba/input/aligned_samples.bam -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,783   copying resolwe_bio/tests/files/arriba/input/aligned_samples_error.bam -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,810   copying resolwe_bio/tests/files/arriba/input/known_fusions.tsv.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,813   copying resolwe_bio/tests/files/arriba/input/minigenome.fasta.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,818   copying resolwe_bio/tests/files/arriba/input/minigenome.gtf.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,823   copying resolwe_bio/tests/files/arriba/input/reads_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,832   copying resolwe_bio/tests/files/arriba/input/reads_R2.fastq.gz -> build/lib/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:27,845   creating build/lib/resolwe_bio/tests/files/workflow_wes/output
2025-06-01T13:09:27,848   copying resolwe_bio/tests/files/workflow_wes/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/output
2025-06-01T13:09:27,852   creating build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:27,854   copying resolwe_bio/tests/files/workflow_wes/input/TP53_1.fastq.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:27,860   copying resolwe_bio/tests/files/workflow_wes/input/TP53_2.fastq.gz -> build/lib/resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:27,865   creating build/lib/resolwe_bio/tests/files/splitNcigar_reads/output
2025-06-01T13:09:27,868   copying resolwe_bio/tests/files/splitNcigar_reads/output/split_cigar_stats.txt -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/output
2025-06-01T13:09:27,872   creating build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:27,874   copying resolwe_bio/tests/files/splitNcigar_reads/input/chr1_1-15000.fasta.gz -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:27,878   copying resolwe_bio/tests/files/splitNcigar_reads/input/chr1_500.bam -> build/lib/resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:27,883   creating build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,886   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1.bam_stats.txt -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,891   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1_markduplicates_metrics.txt -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,900   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,905   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_bam.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,909   copying resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_geneset.tsv -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:27,913   creating build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,914   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.fasta.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,919   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.vcf.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,923   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000_R1.fastq.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,932   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/dbsnp-hg38.vcf.gz -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,937   copying resolwe_bio/tests/files/rnaseq_variantcalling/input/hg38.intervals.bed -> build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:27,941   creating build/lib/resolwe_bio/tests/files/variant_annotation/output
2025-06-01T13:09:27,943   copying resolwe_bio/tests/files/variant_annotation/output/annotated_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/output
2025-06-01T13:09:27,952   creating build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,954   copying resolwe_bio/tests/files/variant_annotation/input/canonical_transcripts_ens109.txt.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,965   copying resolwe_bio/tests/files/variant_annotation/input/clinvar.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,968   copying resolwe_bio/tests/files/variant_annotation/input/clinvar_2.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,972   copying resolwe_bio/tests/files/variant_annotation/input/dbsnp.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,979   copying resolwe_bio/tests/files/variant_annotation/input/dbsnp_2.vcf.gz -> build/lib/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:27,985   creating build/lib/resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:27,988   copying resolwe_bio/tests/files/diff_exp/output/deseq2_volcano_plot.json.gz -> build/lib/resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:27,994   copying resolwe_bio/tests/files/diff_exp/output/diff_exp_check_types.json.gz -> build/lib/resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:28,001   creating build/lib/resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:28,003   copying resolwe_bio/tests/files/diff_exp/input/deseq2_bad_output.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:28,011   copying resolwe_bio/tests/files/diff_exp/input/deseq2_output.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:28,016   copying resolwe_bio/tests/files/diff_exp/input/diff_exp_check_geneid_type.tab.gz -> build/lib/resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:28,022   creating build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:28,026   copying resolwe_bio/tests/files/bamtofastq/output/output_reads_mate1.fastq.gz -> build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:28,035   copying resolwe_bio/tests/files/bamtofastq/output/output_reads_mate2.fastq.gz -> build/lib/resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:28,040   creating build/lib/resolwe_bio/tests/files/bamtofastq/input
2025-06-01T13:09:28,042   copying resolwe_bio/tests/files/bamtofastq/input/alignment.bam -> build/lib/resolwe_bio/tests/files/bamtofastq/input
2025-06-01T13:09:28,049   creating build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:28,052   copying resolwe_bio/tests/files/nucl_seq/output/genome.dict -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:28,055   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:28,058   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:28,062   copying resolwe_bio/tests/files/nucl_seq/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:28,065   creating build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,066   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fa.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,070   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,075   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,079   copying resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fastq.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,083   copying resolwe_bio/tests/files/nucl_seq/input/empty.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,086   copying resolwe_bio/tests/files/nucl_seq/input/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,089   copying resolwe_bio/tests/files/nucl_seq/input/incomplete.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,093   copying resolwe_bio/tests/files/nucl_seq/input/malformed.fasta -> build/lib/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:28,096   creating build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,099   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_index.tar.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,103   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_overlap_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,106   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_unal_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,110   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_paired_end_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,114   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_reads_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,117   copying resolwe_bio/tests/files/test_bowtie2/output/bowtie2_use_SE_report.txt -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,121   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,125   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.fai -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,129   copying resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:28,132   creating build/lib/resolwe_bio/tests/files/test_bowtie2/input
2025-06-01T13:09:28,134   copying resolwe_bio/tests/files/test_bowtie2/input/g.en ome.fasta.gz -> build/lib/resolwe_bio/tests/files/test_bowtie2/input
2025-06-01T13:09:28,138   creating build/lib/resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:28,140   copying resolwe_bio/tests/files/methylation/inputs/illumina_probe_ids_to_ensembl.tab -> build/lib/resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:28,144   copying resolwe_bio/tests/files/methylation/inputs/wrong_sample_name_Blue.idat.gz -> build/lib/resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:28,147   creating build/lib/resolwe_bio/tests/files/methylation/output
2025-06-01T13:09:28,148   copying resolwe_bio/tests/files/methylation/output/QC_data.txt -> build/lib/resolwe_bio/tests/files/methylation/output
2025-06-01T13:09:28,152   creating build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,154   copying resolwe_bio/tests/files/macs2/output/batch_case_postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,157   copying resolwe_bio/tests/files/macs2/output/batch_case_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,161   copying resolwe_bio/tests/files/macs2/output/case_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,164   copying resolwe_bio/tests/files/macs2/output/control_prepeak_qc.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,168   copying resolwe_bio/tests/files/macs2/output/postpeak_qc_report.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,171   copying resolwe_bio/tests/files/macs2/output/rose2_enhancer_table.txt -> build/lib/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:28,175   creating build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,176   copying resolwe_bio/tests/files/macs2/input/SRR5675973_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,204   copying resolwe_bio/tests/files/macs2/input/SRR5675974_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,237   copying resolwe_bio/tests/files/macs2/input/SRR5675975_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,269   copying resolwe_bio/tests/files/macs2/input/SRR5675976_chr17.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,304   copying resolwe_bio/tests/files/macs2/input/paired_end_discodeum.bam -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,309   copying resolwe_bio/tests/files/macs2/input/promoter_regions.bed -> build/lib/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:28,312   creating build/lib/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:28,314   copying resolwe_bio/tests/files/snpeff/output/extracted_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:28,318   copying resolwe_bio/tests/files/snpeff/output/filtered_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:28,324   copying resolwe_bio/tests/files/snpeff/output/multi_variants.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:28,328   copying resolwe_bio/tests/files/snpeff/output/variants_set.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:28,331   creating build/lib/resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:28,333   copying resolwe_bio/tests/files/snpeff/input/dbsnp.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:28,337   copying resolwe_bio/tests/files/snpeff/input/filtered_snpeff.vcf.gz -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:28,341   copying resolwe_bio/tests/files/snpeff/input/set_of_genes.txt -> build/lib/resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:28,345   creating build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:28,347   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:28,351   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes_euclidean.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:28,355   copying resolwe_bio/tests/files/find_similar/outputs/similar_genes_pearson.json.gz -> build/lib/resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:28,358   creating build/lib/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:28,360   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:28,364   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam.bai -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:28,368   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:28,372   copying resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped_metrics.txt -> build/lib/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:28,763   installing to build/bdist.linux-armv7l/wheel
2025-06-01T13:09:28,764   running install
2025-06-01T13:09:28,795   running install_lib
2025-06-01T13:09:28,809   creating build/bdist.linux-armv7l/wheel
2025-06-01T13:09:28,812   creating build/bdist.linux-armv7l/wheel/resolwe_bio
2025-06-01T13:09:28,814   copying build/lib/resolwe_bio/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-06-01T13:09:28,819   creating build/bdist.linux-armv7l/wheel/resolwe_bio/utils
2025-06-01T13:09:28,821   copying build/lib/resolwe_bio/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-06-01T13:09:28,824   copying build/lib/resolwe_bio/utils/filter.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-06-01T13:09:28,827   copying build/lib/resolwe_bio/utils/test.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/utils
2025-06-01T13:09:28,831   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests
2025-06-01T13:09:28,840   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files
2025-06-01T13:09:28,842   copying build/lib/resolwe_bio/tests/files/reads_fpkm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,845   copying build/lib/resolwe_bio/tests/files/hs_gatk_insert_size_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,848   copying build/lib/resolwe_bio/tests/files/prepeak_pe.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,864   copying build/lib/resolwe_bio/tests/files/macs14_peaks.bb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,868   copying build/lib/resolwe_bio/tests/files/bamplot_alignment.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,872   copying build/lib/resolwe_bio/tests/files/clustering_expressions_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,876   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping
2025-06-01T13:09:28,879   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping/output
2025-06-01T13:09:28,880   copying build/lib/resolwe_bio/tests/files/microarray_mapping/output/GSM971957_mapped.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/output
2025-06-01T13:09:28,884   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/microarray_mapping/input
2025-06-01T13:09:28,885   copying build/lib/resolwe_bio/tests/files/microarray_mapping/input/mapping.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/input
2025-06-01T13:09:28,888   copying build/lib/resolwe_bio/tests/files/microarray_mapping/input/GSM971957_unmapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/microarray_mapping/input
2025-06-01T13:09:28,891   copying build/lib/resolwe_bio/tests/files/chr1_paired_R1_workflow_bbduk_star_htseq_preprocessed_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,895   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/hierarchical_clustering
2025-06-01T13:09:28,898   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,900   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_data.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,904   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/sample_cluster_data.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,907   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/gene_cluster_filtered.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,910   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_sample.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,912   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/output/clustering_out_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/output
2025-06-01T13:09:28,916   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,917   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,921   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,924   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,927   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_5.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,931   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_4.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,934   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_int1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,937   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_7.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,940   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,943   copying build/lib/resolwe_bio/tests/files/hierarchical_clustering/input/clustering_ensembl_6.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/hierarchical_clustering/input
2025-06-01T13:09:28,946   copying build/lib/resolwe_bio/tests/files/old_encoding1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,949   copying build/lib/resolwe_bio/tests/files/hs sim_reads2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:28,954   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants
2025-06-01T13:09:28,957   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:28,959   copying build/lib/resolwe_bio/tests/files/report_variants/output/no_mutations.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:28,963   copying build/lib/resolwe_bio/tests/files/report_variants/output/mutations_KRAS.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:28,966   copying build/lib/resolwe_bio/tests/files/report_variants/output/ensembl_variants.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:28,969   copying build/lib/resolwe_bio/tests/files/report_variants/output/mutations_clinvar.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/output
2025-06-01T13:09:28,974   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,975   copying build/lib/resolwe_bio/tests/files/report_variants/input/ensembl.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,979   copying build/lib/resolwe_bio/tests/files/report_variants/input/chr12_KRAS_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,984   copying build/lib/resolwe_bio/tests/files/report_variants/input/KRAS_annotated.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,987   copying build/lib/resolwe_bio/tests/files/report_variants/input/empty.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,991   copying build/lib/resolwe_bio/tests/files/report_variants/input/KRAS_mutation.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,994   copying build/lib/resolwe_bio/tests/files/report_variants/input/no_mutation.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:28,997   copying build/lib/resolwe_bio/tests/files/report_variants/input/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:29,001   copying build/lib/resolwe_bio/tests/files/report_variants/input/ensembl.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:29,004   copying build/lib/resolwe_bio/tests/files/report_variants/input/filtered_variants_clinvar.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/report_variants/input
2025-06-01T13:09:29,008   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools
2025-06-01T13:09:29,011   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,013   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,018   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,021   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,026   copying build/lib/resolwe_bio/tests/files/samtools/inputs/regions_bed.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,029   copying build/lib/resolwe_bio/tests/files/samtools/inputs/regions.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,033   copying build/lib/resolwe_bio/tests/files/samtools/inputs/samtools_in_downsampled.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/inputs
2025-06-01T13:09:29,039   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,041   copying build/lib/resolwe_bio/tests/files/samtools/outputs/coverage_multi.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,045   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage_mean.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,048   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_bed.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,053   copying build/lib/resolwe_bio/tests/files/samtools/outputs/coverage_single.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,056   copying build/lib/resolwe_bio/tests/files/samtools/outputs/bedfile.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,059   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions_bed_coverage.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,062   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,064   copying build/lib/resolwe_bio/tests/files/samtools/outputs/regions.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,067   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_counts.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,071   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_depth.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,074   copying build/lib/resolwe_bio/tests/files/samtools/outputs/samtools_in_mpileup_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/samtools/outputs
2025-06-01T13:09:29,078   copying build/lib/resolwe_bio/tests/files/regtools_novel_SJ.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,081   copying build/lib/resolwe_bio/tests/files/geneset_cuffdiff_all.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,084   copying build/lib/resolwe_bio/tests/files/macs14_peaks.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,087   copying build/lib/resolwe_bio/tests/files/mappings_gsea.tab.zip -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,090   copying build/lib/resolwe_bio/tests/files/fw reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,094   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam
2025-06-01T13:09:29,096   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:29,098   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_index.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:29,101   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_bam_upload_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:29,105   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:29,108   copying build/lib/resolwe_bio/tests/files/test_bam/output/alignment_position_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/output
2025-06-01T13:09:29,112   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:29,114   copying build/lib/resolwe_bio/tests/files/test_bam/input/alignment_bam_upload_index.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:29,117   copying build/lib/resolwe_bio/tests/files/test_bam/input/alignment_name_sorted.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bam/input
2025-06-01T13:09:29,120   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,123   copying build/lib/resolwe_bio/tests/files/bamplot.gff -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,127   copying build/lib/resolwe_bio/tests/files/s_1_3.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,131   copying build/lib/resolwe_bio/tests/files/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,134   copying build/lib/resolwe_bio/tests/files/fw reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,137   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_paired_rw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,140   copying build/lib/resolwe_bio/tests/files/diffexp_edgeR.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,144   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr
2025-06-01T13:09:29,146   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,148   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,152   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,156   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_recalibration.table -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,162   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,166   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,169   copying build/lib/resolwe_bio/tests/files/bqsr/output/TP53.primerclipped.markduplicates_RG.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/output
2025-06-01T13:09:29,172   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:29,174   copying build/lib/resolwe_bio/tests/files/bqsr/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:29,281   copying build/lib/resolwe_bio/tests/files/bqsr/input/TP53.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:29,284   copying build/lib/resolwe_bio/tests/files/bqsr/input/dbsnp_TP53.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:29,287   copying build/lib/resolwe_bio/tests/files/bqsr/input/dbsnp_STK11.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bqsr/input
2025-06-01T13:09:29,292   copying build/lib/resolwe_bio/tests/files/exp2_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,297   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement
2025-06-01T13:09:29,300   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement/output
2025-06-01T13:09:29,302   copying build/lib/resolwe_bio/tests/files/variant_refinement/output/variants.refined.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/output
2025-06-01T13:09:29,307   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:29,309   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/chrX_1_28000.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:29,326   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/snp.recalibrated_chrX_28000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:29,330   copying build/lib/resolwe_bio/tests/files/variant_refinement/input/chrX_28000.renamed.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_refinement/input
2025-06-01T13:09:29,334   copying build/lib/resolwe_bio/tests/files/HS chr21_short.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,350   copying build/lib/resolwe_bio/tests/files/markdup_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,356   copying build/lib/resolwe_bio/tests/files/exp 4_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,360   copying build/lib/resolwe_bio/tests/files/atac_seq_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,364   copying build/lib/resolwe_bio/tests/files/deseq2_exp2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,367   copying build/lib/resolwe_bio/tests/files/adapters.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,386   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie
2025-06-01T13:09:29,389   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,391   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,394   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,398   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_single_reads_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,409   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,413   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,416   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_paired_reads_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,421   copying build/lib/resolwe_bio/tests/files/test_bowtie/output/bowtie_use_SE_report.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/output
2025-06-01T13:09:29,438   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie/input
2025-06-01T13:09:29,441   copying build/lib/resolwe_bio/tests/files/test_bowtie/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie/input
2025-06-01T13:09:29,444   copying build/lib/resolwe_bio/tests/files/feature counts_detect_strandedness.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,448   copying build/lib/resolwe_bio/tests/files/merged_expset_all.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,451   copying build/lib/resolwe_bio/tests/files/hisat2_paired_ncbi_bigwig.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,455   copying build/lib/resolwe_bio/tests/files/my.strange.genome name$.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,459   copying build/lib/resolwe_bio/tests/files/atac_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,472   copying build/lib/resolwe_bio/tests/files/rw reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,476   copying build/lib/resolwe_bio/tests/files/feature_counts hs_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,482   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,486   copying build/lib/resolwe_bio/tests/files/exp_matrix.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,490   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired_wo_adapter_trim_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,494   copying build/lib/resolwe_bio/tests/files/deseq2_count_matrix.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,499   copying build/lib/resolwe_bio/tests/files/exp_6_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,503   copying build/lib/resolwe_bio/tests/files/chr1_region.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,507   copying build/lib/resolwe_bio/tests/files/macs14_case.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,512   copying build/lib/resolwe_bio/tests/files/hg19_chr20_small.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,516   copying build/lib/resolwe_bio/tests/files/cutadapt_paired_reverse_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,520   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration
2025-06-01T13:09:29,528   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,530   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants_multi.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,535   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants_multi_sample.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,540   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/genotype_filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,544   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants_mask.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,549   copying build/lib/resolwe_bio/tests/files/variant_filtration/output/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/output
2025-06-01T13:09:29,553   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:29,555   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:29,559   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000_multi_sample.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:29,564   copying build/lib/resolwe_bio/tests/files/variant_filtration/input/chr1_19000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_filtration/input
2025-06-01T13:09:29,568   copying build/lib/resolwe_bio/tests/files/old_encoding1_transformed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,572   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk
2025-06-01T13:09:29,575   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:29,578   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:29,582   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:29,586   copying build/lib/resolwe_bio/tests/files/seqtk/output/seqtk_subsampled_reads_single_end.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/output
2025-06-01T13:09:29,591   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:29,593   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_paired_R2_workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:29,597   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_single_bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:29,602   copying build/lib/resolwe_bio/tests/files/seqtk/input/hs_paired_R1_workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/seqtk/input
2025-06-01T13:09:29,607   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload
2025-06-01T13:09:29,620   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,622   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R1_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,626   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,630   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,634   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/paired_end_merged_lanes_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,639   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/Test_S1_L001_R1_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,643   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/merged_single_end_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,647   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/TestPaired_S1_L001_R2_001_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,651   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,654   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/output/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/output
2025-06-01T13:09:29,659   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,661   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,665   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/garbage.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,669   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,673   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,676   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,680   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,685   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1_diff_num_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,689   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,692   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,696   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,701   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,706   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/missing_qual.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,709   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,713   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_rew.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,716   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate1_reordered.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,720   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2_diff_num_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,725   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,729   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/old_encoding1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,732   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,736   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/garbage2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,740   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,745   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,749   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/empty.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,752   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/TestPaired_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,756   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,760   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/mate2_reordered.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,764   copying build/lib/resolwe_bio/tests/files/test_fastq_upload/input/Test_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_fastq_upload/input
2025-06-01T13:09:29,770   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut
2025-06-01T13:09:29,773   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,775   copying build/lib/resolwe_bio/tests/files/chemut/output/GATKvariants_raw.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,779   copying build/lib/resolwe_bio/tests/files/chemut/output/indel_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,784   copying build/lib/resolwe_bio/tests/files/chemut/output/variant_filtered.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,788   copying build/lib/resolwe_bio/tests/files/chemut/output/snv_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,792   copying build/lib/resolwe_bio/tests/files/chemut/output/chemut.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/output
2025-06-01T13:09:29,796   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,799   copying build/lib/resolwe_bio/tests/files/chemut/input/variant_calling_filtering.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,805   copying build/lib/resolwe_bio/tests/files/chemut/input/CM_mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,811   copying build/lib/resolwe_bio/tests/files/chemut/input/AX4_mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,816   copying build/lib/resolwe_bio/tests/files/chemut/input/dd_chr1.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,819   copying build/lib/resolwe_bio/tests/files/chemut/input/CM_mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,839   copying build/lib/resolwe_bio/tests/files/chemut/input/AX4_mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,844   copying build/lib/resolwe_bio/tests/files/chemut/input/chemut_genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chemut/input
2025-06-01T13:09:29,848   copying build/lib/resolwe_bio/tests/files/geneset_edgeR_up.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,851   copying build/lib/resolwe_bio/tests/files/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,857   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression
2025-06-01T13:09:29,860   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,863   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/mm_ncbi_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,868   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,872   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/cuffquant_exp_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,875   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_mac_line_ending_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,879   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,883   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/upload_exp_norm_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,887   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,890   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,894   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_norm.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,897   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,901   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions5.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,905   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,909   copying build/lib/resolwe_bio/tests/files/test_upload_expression/output/exp_1_rc_expressions3.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/output
2025-06-01T13:09:29,914   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,916   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/mm_ncbi_exp.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,930   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp.1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,934   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_windows_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,938   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.xlsx.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,942   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,946   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_mac_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,950   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/cuffquant_exp.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,953   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,957   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_unix_line_ending.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,962   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_tpm.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,966   copying build/lib/resolwe_bio/tests/files/test_upload_expression/input/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_upload_expression/input
2025-06-01T13:09:29,970   copying build/lib/resolwe_bio/tests/files/rRNA_forw_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,974   copying build/lib/resolwe_bio/tests/files/peaks.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,978   copying build/lib/resolwe_bio/tests/files/pca_plot_3.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,982   copying build/lib/resolwe_bio/tests/files/cutadapt_single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,986   copying build/lib/resolwe_bio/tests/files/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,990   copying build/lib/resolwe_bio/tests/files/nanostring_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:29,995   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chipqc
2025-06-01T13:09:29,998   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chipqc/output
2025-06-01T13:09:30,001   copying build/lib/resolwe_bio/tests/files/chipqc/output/PeakProfile_mqc.png -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/output
2025-06-01T13:09:30,009   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,012   copying build/lib/resolwe_bio/tests/files/chipqc/input/macs14_peaks.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,016   copying build/lib/resolwe_bio/tests/files/chipqc/input/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,020   copying build/lib/resolwe_bio/tests/files/chipqc/input/macs14_case_duplicated.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,026   copying build/lib/resolwe_bio/tests/files/chipqc/input/SRR5675976_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,059   copying build/lib/resolwe_bio/tests/files/chipqc/input/SRR5675973_chr17_peaks.xls -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/chipqc/input
2025-06-01T13:09:30,063   copying build/lib/resolwe_bio/tests/files/00Hr.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,068   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/quantseq
2025-06-01T13:09:30,071   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,074   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,078   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,082   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_paired_cpm.tab.g -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,086   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,090   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_cutadapt_star_fc_quant_single_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,094   copying build/lib/resolwe_bio/tests/files/quantseq/output/workflow_bbduk_star_fc_quant_single_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/quantseq/output
2025-06-01T13:09:30,099   copying build/lib/resolwe_bio/tests/files/macs14_treat.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,105   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs
2025-06-01T13:09:30,108   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,111   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,115   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.meth.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,119   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.mr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,125   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,129   copying build/lib/resolwe_bio/tests/files/wgbs/output/methconts_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,132   copying build/lib/resolwe_bio/tests/files/wgbs/output/walt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,146   copying build/lib/resolwe_bio/tests/files/wgbs/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,151   copying build/lib/resolwe_bio/tests/files/wgbs/output/walt_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,155   copying build/lib/resolwe_bio/tests/files/wgbs/output/3A_WT_WGBS_chr2_17k.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,159   copying build/lib/resolwe_bio/tests/files/wgbs/output/Escherichia_phage_bsrate.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/output
2025-06-01T13:09:30,165   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,168   copying build/lib/resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,174   copying build/lib/resolwe_bio/tests/files/wgbs/input/unmethylated_lambda_J02459.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,180   copying build/lib/resolwe_bio/tests/files/wgbs/input/hg19_chr2 17k.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,184   copying build/lib/resolwe_bio/tests/files/wgbs/input/3A_WT_WGBS_chr2_17k_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,193   copying build/lib/resolwe_bio/tests/files/wgbs/input/spike_in_lambda.mr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,198   copying build/lib/resolwe_bio/tests/files/wgbs/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs/input
2025-06-01T13:09:30,203   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing
2025-06-01T13:09:30,206   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:30,209   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads.SInorm.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:30,216   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads_2.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:30,222   copying build/lib/resolwe_bio/tests/files/bam_processing/output/reads.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/output
2025-06-01T13:09:30,227   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:30,230   copying build/lib/resolwe_bio/tests/files/bam_processing/input/reads.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:30,235   copying build/lib/resolwe_bio/tests/files/bam_processing/input/scaffold_418_subset.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bam_processing/input
2025-06-01T13:09:30,239   copying build/lib/resolwe_bio/tests/files/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,242   copying build/lib/resolwe_bio/tests/files/cuffnorm_all_fpkm_means.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,246   copying build/lib/resolwe_bio/tests/files/hs_b37_chr2_small.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,250   copying build/lib/resolwe_bio/tests/files/mm10_chr17_44M-45M.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,263   copying build/lib/resolwe_bio/tests/files/macs14_control.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,288   copying build/lib/resolwe_bio/tests/files/prepeak_se.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,305   copying build/lib/resolwe_bio/tests/files/old_encoding.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,310   copying build/lib/resolwe_bio/tests/files/cuffquant_mapping.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,331   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired_wo_adapter_trim.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,334   copying build/lib/resolwe_bio/tests/files/expression_htseq.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,338   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/basespace_import
2025-06-01T13:09:30,341   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,348   copying build/lib/resolwe_bio/tests/files/basespace_import/output/single_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,351   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,354   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,358   copying build/lib/resolwe_bio/tests/files/basespace_import/output/single_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,361   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,363   copying build/lib/resolwe_bio/tests/files/basespace_import/output/paired_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/basespace_import/output
2025-06-01T13:09:30,367   copying build/lib/resolwe_bio/tests/files/htseq_cpm_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,380   copying build/lib/resolwe_bio/tests/files/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,384   copying build/lib/resolwe_bio/tests/files/bt2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,389   copying build/lib/resolwe_bio/tests/files/clustering_expressions_1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,392   copying build/lib/resolwe_bio/tests/files/chr1_region_ucsc.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,396   copying build/lib/resolwe_bio/tests/files/4-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,400   copying build/lib/resolwe_bio/tests/files/SRR2141558_chr1_20k.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,410   copying build/lib/resolwe_bio/tests/files/control_macs2.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,421   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow
2025-06-01T13:09:30,424   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output
2025-06-01T13:09:30,428   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,431   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_insert_size_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,434   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_rrbs_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,439   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_chr2_17k_paired.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,442   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,454   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_alignment_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/paired_end
2025-06-01T13:09:30,458   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:30,460   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_alignment_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:30,463   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_chr2_17k_single.hmr.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:30,468   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:30,472   copying build/lib/resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgbs_workflow/output/single_end
2025-06-01T13:09:30,476   copying build/lib/resolwe_bio/tests/files/macs14_summits.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,481   copying build/lib/resolwe_bio/tests/files/raw_cuffdiff.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,499   copying build/lib/resolwe_bio/tests/files/reads_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,502   copying build/lib/resolwe_bio/tests/files/cuffnorm_expression.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,506   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant
2025-06-01T13:09:30,509   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:30,511   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_quant_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:30,515   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_counts.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:30,518   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/variance_salmon.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:30,522   copying build/lib/resolwe_bio/tests/files/salmon_quant/output/salmon_transcripts_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/output
2025-06-01T13:09:30,540   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:30,542   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:30,547   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:30,551   copying build/lib/resolwe_bio/tests/files/salmon_quant/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_quant/input
2025-06-01T13:09:30,554   copying build/lib/resolwe_bio/tests/files/bamplot.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,558   copying build/lib/resolwe_bio/tests/files/reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,561   copying build/lib/resolwe_bio/tests/files/annotation dicty.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,565   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/goenrichment
2025-06-01T13:09:30,579   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:30,581   copying build/lib/resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_dicty.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:30,584   copying build/lib/resolwe_bio/tests/files/goenrichment/output/go_enriched_terms_mouse.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:30,588   copying build/lib/resolwe_bio/tests/files/goenrichment/output/mapped_ids.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/output
2025-06-01T13:09:30,591   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,593   copying build/lib/resolwe_bio/tests/files/goenrichment/input/goa_human.gaf.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,610   copying build/lib/resolwe_bio/tests/files/goenrichment/input/ontology_dicty_cropped.obo.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,614   copying build/lib/resolwe_bio/tests/files/goenrichment/input/gaf_dicty_cropped.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,617   copying build/lib/resolwe_bio/tests/files/goenrichment/input/ontology_mus_cropped.obo.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,621   copying build/lib/resolwe_bio/tests/files/goenrichment/input/gaf_mgi_cropped.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,624   copying build/lib/resolwe_bio/tests/files/goenrichment/input/go.obo.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/goenrichment/input
2025-06-01T13:09:30,628   copying build/lib/resolwe_bio/tests/files/cuffquant_2.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,632   copying build/lib/resolwe_bio/tests/files/hisat2_paired_ucsc_bigwig.bw -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,635   copying build/lib/resolwe_bio/tests/files/bad.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,639   copying build/lib/resolwe_bio/tests/files/clustering_expressions_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,642   copying build/lib/resolwe_bio/tests/files/hs_gatk_alignment_summary_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,646   copying build/lib/resolwe_bio/tests/files/PGSC upload.gff3 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,660   copying build/lib/resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,664   copying build/lib/resolwe_bio/tests/files/regtools_SJ_from_bam.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,667   copying build/lib/resolwe_bio/tests/files/merged_expset_subset.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,670   copying build/lib/resolwe_bio/tests/files/s_1_1.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,675   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/import-sra
2025-06-01T13:09:30,678   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/import-sra/output
2025-06-01T13:09:30,680   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR1661333.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-06-01T13:09:30,684   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR2124780.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-06-01T13:09:30,700   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR2124781.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-06-01T13:09:30,703   copying build/lib/resolwe_bio/tests/files/import-sra/output/SRR1661332.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/import-sra/output
2025-06-01T13:09:30,706   copying build/lib/resolwe_bio/tests/files/subread_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,710   copying build/lib/resolwe_bio/tests/files/s_1_2.qseq.small.txt.bz2 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,713   copying build/lib/resolwe_bio/tests/files/box_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,717   copying build/lib/resolwe_bio/tests/files/features_update.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,720   copying build/lib/resolwe_bio/tests/files/bt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,725   copying build/lib/resolwe_bio/tests/files/cutadapt mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,728   copying build/lib/resolwe_bio/tests/files/exp1_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,748   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort
2025-06-01T13:09:30,750   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,753   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,756   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,759   copying build/lib/resolwe_bio/tests/files/xengsort/output/xgensort_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,763   copying build/lib/resolwe_bio/tests/files/xengsort/output/classification_stats_single.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,766   copying build/lib/resolwe_bio/tests/files/xengsort/output/index_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,778   copying build/lib/resolwe_bio/tests/files/xengsort/output/classification_stats_paired.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,781   copying build/lib/resolwe_bio/tests/files/xengsort/output/graft_reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/output
2025-06-01T13:09:30,784   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:30,786   copying build/lib/resolwe_bio/tests/files/xengsort/input/mmu_GRCm38_chr15_61857500-61858500.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:30,790   copying build/lib/resolwe_bio/tests/files/xengsort/input/SRR9130497_100_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:30,794   copying build/lib/resolwe_bio/tests/files/xengsort/input/hsa_GRCh38_chr8_127735500-127736500.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:30,797   copying build/lib/resolwe_bio/tests/files/xengsort/input/SRR9130497_100_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/xengsort/input
2025-06-01T13:09:30,801   copying build/lib/resolwe_bio/tests/files/bamplot_ alignment1.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,806   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/annotation_bedpe
2025-06-01T13:09:30,818   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/annotation_bedpe/input
2025-06-01T13:09:30,820   copying build/lib/resolwe_bio/tests/files/annotation_bedpe/input/alk.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/annotation_bedpe/input
2025-06-01T13:09:30,824   copying build/lib/resolwe_bio/tests/files/exp_1_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,827   copying build/lib/resolwe_bio/tests/files/regtools_from_bam.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,830   copying build/lib/resolwe_bio/tests/files/prepeak_pe_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,833   copying build/lib/resolwe_bio/tests/files/igv_human.lf.vcf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,838   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore
2025-06-01T13:09:30,841   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore/inputs
2025-06-01T13:09:30,843   copying build/lib/resolwe_bio/tests/files/trimgalore/inputs/illumina_universal_adapters.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/inputs
2025-06-01T13:09:30,847   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:30,858   copying build/lib/resolwe_bio/tests/files/trimgalore/outputs/mate2_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:30,862   copying build/lib/resolwe_bio/tests/files/trimgalore/outputs/mate1_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/trimgalore/outputs
2025-06-01T13:09:30,864   copying build/lib/resolwe_bio/tests/files/Hs GRCh38_86 upload_sorted.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,868   copying build/lib/resolwe_bio/tests/files/samtools_idxstats_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,871   copying build/lib/resolwe_bio/tests/files/chr1_paired_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,875   copying build/lib/resolwe_bio/tests/files/exp3_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:30,879   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts
2025-06-01T13:09:30,882   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,899   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/hg19_chr20_small_modified.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,902   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,905   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,911   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/cuffquant_mapping.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,915   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/annotation_rsem.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,918   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/bam_with_read_group.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,922   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/paired_lanes.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,926   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,930   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/single_lanes.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,933   copying build/lib/resolwe_bio/tests/files/test_featurecounts/inputs/feature_counts hs.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/inputs
2025-06-01T13:09:30,939   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,948   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_single_lanes_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,952   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,955   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,958   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,961   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc_with_rg.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,964   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/auto_detect_strand_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,967   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,970   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,990   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/per_lane_rc.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,993   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_per_lane_rc.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,996   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_paired_lanes_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:30,999   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_gff3_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:31,003   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_ucsc_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:31,006   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:31,019   copying build/lib/resolwe_bio/tests/files/test_featurecounts/outputs/feature_counts_out_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_featurecounts/outputs
2025-06-01T13:09:31,023   copying build/lib/resolwe_bio/tests/files/exp_6_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,028   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align
2025-06-01T13:09:31,030   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:31,033   copying build/lib/resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:31,036   copying build/lib/resolwe_bio/tests/files/test_subsample_align/output/downsampled_aligned_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/output
2025-06-01T13:09:31,041   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_subsample_align/input
2025-06-01T13:09:31,043   copying build/lib/resolwe_bio/tests/files/test_subsample_align/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_subsample_align/input
2025-06-01T13:09:31,060   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_paired_end_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,063   copying build/lib/resolwe_bio/tests/files/log_box_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,066   copying build/lib/resolwe_bio/tests/files/cutadapt mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,070   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk
2025-06-01T13:09:31,073   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,075   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_fw_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,079   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_rv_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,089   copying build/lib/resolwe_bio/tests/files/bbduk/output/bbduk_test_reads_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,093   copying build/lib/resolwe_bio/tests/files/bbduk/output/rRNA_forw_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,097   copying build/lib/resolwe_bio/tests/files/bbduk/output/fw_reads_preprocessed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/output
2025-06-01T13:09:31,102   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,104   copying build/lib/resolwe_bio/tests/files/bbduk/input/barcodes.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,108   copying build/lib/resolwe_bio/tests/files/bbduk/input/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,120   copying build/lib/resolwe_bio/tests/files/bbduk/input/bbduk_test_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,123   copying build/lib/resolwe_bio/tests/files/bbduk/input/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,127   copying build/lib/resolwe_bio/tests/files/bbduk/input/bbduk_adapters.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bbduk/input
2025-06-01T13:09:31,131   copying build/lib/resolwe_bio/tests/files/3_prime_adapter.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,134   copying build/lib/resolwe_bio/tests/files/deseq2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,137   copying build/lib/resolwe_bio/tests/files/prepeak_pe_qc_report_tn5.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,141   copying build/lib/resolwe_bio/tests/files/regtools_SJ.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,158   copying build/lib/resolwe_bio/tests/files/rRNA_rew.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,161   copying build/lib/resolwe_bio/tests/files/gff_to_gtf_annotation.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,164   copying build/lib/resolwe_bio/tests/files/3-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,168   copying build/lib/resolwe_bio/tests/files/exp_7_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,171   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_paired.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,174   copying build/lib/resolwe_bio/tests/files/matabolic pathway.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,178   copying build/lib/resolwe_bio/tests/files/geneset_3.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,181   copying build/lib/resolwe_bio/tests/files/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,201   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/qorts
2025-06-01T13:09:31,204   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:31,206   copying build/lib/resolwe_bio/tests/files/qorts/input/salmon_cds.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:31,209   copying build/lib/resolwe_bio/tests/files/qorts/input/hs paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:31,213   copying build/lib/resolwe_bio/tests/files/qorts/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/qorts/input
2025-06-01T13:09:31,228   copying build/lib/resolwe_bio/tests/files/hs sim_reads1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,231   copying build/lib/resolwe_bio/tests/files/Hs GRCh38_86 upload.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,235   copying build/lib/resolwe_bio/tests/files/annotation_rsem.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,240   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa
2025-06-01T13:09:31,242   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,244   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,248   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,260   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,263   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_unmapped_reads.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,267   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_bt_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,270   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,273   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_bt_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,276   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,288   copying build/lib/resolwe_bio/tests/files/test_bwa/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,291   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,294   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa-mem2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,298   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem1_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,302   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem1_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,305   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_reads_mapped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,308   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_sw_paired_reads_mapped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,320   copying build/lib/resolwe_bio/tests/files/test_bwa/output/bwa_mem_paired_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/output
2025-06-01T13:09:31,324   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:31,326   copying build/lib/resolwe_bio/tests/files/test_bwa/input/bwa-mem2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:31,330   copying build/lib/resolwe_bio/tests/files/test_bwa/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bwa/input
2025-06-01T13:09:31,334   copying build/lib/resolwe_bio/tests/files/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,338   copying build/lib/resolwe_bio/tests/files/de_file_cuffdiff.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,342   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_alignmentsieve
2025-06-01T13:09:31,358   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:31,360   copying build/lib/resolwe_bio/tests/files/test_alignmentsieve/output/filtered_max_149_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:31,363   copying build/lib/resolwe_bio/tests/files/test_alignmentsieve/output/filtered_min_150_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_alignmentsieve/output
2025-06-01T13:09:31,367   copying build/lib/resolwe_bio/tests/files/walt_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,377   copying build/lib/resolwe_bio/tests/files/cuffnorm_out_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,380   copying build/lib/resolwe_bio/tests/files/cutadapt_3prime_single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,384   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs
2025-06-01T13:09:31,387   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,399   copying build/lib/resolwe_bio/tests/files/wgs/output/wgs_preprocess_bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,402   copying build/lib/resolwe_bio/tests/files/wgs/output/variants_from_workflow.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,406   copying build/lib/resolwe_bio/tests/files/wgs/output/variants.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,410   copying build/lib/resolwe_bio/tests/files/wgs/output/selected_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,413   copying build/lib/resolwe_bio/tests/files/wgs/output/wgs_preprocess_markdups_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,416   copying build/lib/resolwe_bio/tests/files/wgs/output/cohort_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,430   copying build/lib/resolwe_bio/tests/files/wgs/output/selected_variants_filtered.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,436   copying build/lib/resolwe_bio/tests/files/wgs/output/combined_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/output
2025-06-01T13:09:31,440   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,442   copying build/lib/resolwe_bio/tests/files/wgs/input/chr17_single_interval.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,445   copying build/lib/resolwe_bio/tests/files/wgs/input/hg38.intervals.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,448   copying build/lib/resolwe_bio/tests/files/wgs/input/hs_b37_chr17_upto_TP53.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,498   copying build/lib/resolwe_bio/tests/files/wgs/input/analysis_ready.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,504   copying build/lib/resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,508   copying build/lib/resolwe_bio/tests/files/wgs/input/vcf_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,512   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,515   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,520   copying build/lib/resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,525   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,532   copying build/lib/resolwe_bio/tests/files/wgs/input/dbsnp_TP53.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,538   copying build/lib/resolwe_bio/tests/files/wgs/input/TP53_aligned_reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,549   copying build/lib/resolwe_bio/tests/files/wgs/input/vcf_1.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,556   copying build/lib/resolwe_bio/tests/files/wgs/input/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,561   copying build/lib/resolwe_bio/tests/files/wgs/input/dbsnp_STK11.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,564   copying build/lib/resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,568   copying build/lib/resolwe_bio/tests/files/wgs/input/variants2.g.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs/input
2025-06-01T13:09:31,573   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table
2025-06-01T13:09:31,576   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table/output
2025-06-01T13:09:31,579   copying build/lib/resolwe_bio/tests/files/variants_to_table/output/variants_to_table.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variants_to_table/output
2025-06-01T13:09:31,584   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variants_to_table/input
2025-06-01T13:09:31,587   copying build/lib/resolwe_bio/tests/files/variants_to_table/input/refined_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variants_to_table/input
2025-06-01T13:09:31,592   copying build/lib/resolwe_bio/tests/files/chr21_sorted_exons_strand.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,598   copying build/lib/resolwe_bio/tests/files/cutadapt single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,601   copying build/lib/resolwe_bio/tests/files/bwa_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,611   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/metadata_upload
2025-06-01T13:09:31,614   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,616   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable_one_to_many.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,620   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,623   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/empty.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,627   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/upper_case_sufix.TSV -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,633   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/sample_metatable.xlsx -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,642   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/mixed_case_sufix.TsV -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,645   copying build/lib/resolwe_bio/tests/files/metadata_upload/inputs/iris_legacy.TAB -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/metadata_upload/inputs
2025-06-01T13:09:31,649   copying build/lib/resolwe_bio/tests/files/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,653   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun
2025-06-01T13:09:31,665   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun/output
2025-06-01T13:09:31,668   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/output/normalized.bigwig -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/output
2025-06-01T13:09:31,675   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:31,678   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/promoters_hsapiens_grch38_ensembl_109_small.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:31,682   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/mate1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:31,700   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/mate2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:31,723   copying build/lib/resolwe_bio/tests/files/workflow_cutnrun/input/GRCh38_chr1_1_1M.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_cutnrun/input
2025-06-01T13:09:31,733   copying build/lib/resolwe_bio/tests/files/old_encoding_transformed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,737   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star
2025-06-01T13:09:31,740   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,742   copying build/lib/resolwe_bio/tests/files/test_star/output/single_lanes_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,746   copying build/lib/resolwe_bio/tests/files/test_star/output/paired_lanes_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,750   copying build/lib/resolwe_bio/tests/files/test_star/output/exp_summary.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,754   copying build/lib/resolwe_bio/tests/files/test_star/output/workflow_expressions_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,757   copying build/lib/resolwe_bio/tests/files/test_star/output/star_single_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,760   copying build/lib/resolwe_bio/tests/files/test_star/output/workflow_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,770   copying build/lib/resolwe_bio/tests/files/test_star/output/star_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,774   copying build/lib/resolwe_bio/tests/files/test_star/output/hs_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,778   copying build/lib/resolwe_bio/tests/files/test_star/output/ReadsPerGene.out.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,782   copying build/lib/resolwe_bio/tests/files/test_star/output/hs_single_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/output
2025-06-01T13:09:31,786   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,788   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,793   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_paired_R2 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,811   copying build/lib/resolwe_bio/tests/files/test_star/input/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,814   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,819   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,823   copying build/lib/resolwe_bio/tests/files/test_star/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,826   copying build/lib/resolwe_bio/tests/files/test_star/input/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,831   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R1_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,836   copying build/lib/resolwe_bio/tests/files/test_star/input/chr1_paired_R2_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_star/input
2025-06-01T13:09:31,843   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_paired_fw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,848   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray
2025-06-01T13:09:31,851   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:31,853   copying build/lib/resolwe_bio/tests/files/upload_microarray/output/GSM971958.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:31,857   copying build/lib/resolwe_bio/tests/files/upload_microarray/output/GSM971958_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/output
2025-06-01T13:09:31,861   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:31,878   copying build/lib/resolwe_bio/tests/files/upload_microarray/input/GSM971957_mapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:31,882   copying build/lib/resolwe_bio/tests/files/upload_microarray/input/GSM971957_unmapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/upload_microarray/input
2025-06-01T13:09:31,885   copying build/lib/resolwe_bio/tests/files/old_encoding1_transformed_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,890   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2
2025-06-01T13:09:31,893   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:31,895   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_3_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:31,910   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_4_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:31,914   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_1_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:31,918   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/inputs/exp_2_norm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/inputs
2025-06-01T13:09:31,922   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:31,924   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs/count_matrix.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:31,938   copying build/lib/resolwe_bio/tests/files/test_nanostring_deseq2/outputs/de_data_deseq.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_nanostring_deseq2/outputs
2025-06-01T13:09:31,941   copying build/lib/resolwe_bio/tests/files/geneset_out.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,944   copying build/lib/resolwe_bio/tests/files/regtools.bed.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:31,949   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering
2025-06-01T13:09:31,952   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,968   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,971   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,974   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,977   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_constant_8h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,980   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,983   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_12h.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:31,998   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_4h_2_partial_match.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:32,001   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_different_genes.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:32,004   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/inputs/discoideum_8h_2.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/inputs
2025-06-01T13:09:32,008   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:32,010   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:32,014   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:32,017   copying build/lib/resolwe_bio/tests/files/test_etc_clustering/outputs/clustering_euclidean.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_etc_clustering/outputs
2025-06-01T13:09:32,028   copying build/lib/resolwe_bio/tests/files/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,031   copying build/lib/resolwe_bio/tests/files/cufflinks_transcripts.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,035   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready
2025-06-01T13:09:32,038   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready/output
2025-06-01T13:09:32,040   copying build/lib/resolwe_bio/tests/files/ml_ready/output/features.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/output
2025-06-01T13:09:32,044   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:32,058   copying build/lib/resolwe_bio/tests/files/ml_ready/input/exp_matrix.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:32,061   copying build/lib/resolwe_bio/tests/files/ml_ready/input/preprocessor.pickle -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ml_ready/input
2025-06-01T13:09:32,064   copying build/lib/resolwe_bio/tests/files/SRR2124780_2 1k.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,074   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller
2025-06-01T13:09:32,077   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:32,079   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:32,084   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:32,087   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.rna-seq.gatkHC.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:32,091   copying build/lib/resolwe_bio/tests/files/haplotypecaller/output/56GSID_10k.gatkHC4.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/output
2025-06-01T13:09:32,107   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/haplotypecaller/input
2025-06-01T13:09:32,109   copying build/lib/resolwe_bio/tests/files/haplotypecaller/input/56G_masterfile_test_merged_targets_5col.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/haplotypecaller/input
2025-06-01T13:09:32,113   copying build/lib/resolwe_bio/tests/files/chr1_region_salmon.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,117   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper
2025-06-01T13:09:32,120   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:32,122   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:32,140   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:32,145   copying build/lib/resolwe_bio/tests/files/bamclipper/output/TP53.primerclipped.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/output
2025-06-01T13:09:32,149   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:32,151   copying build/lib/resolwe_bio/tests/files/bamclipper/input/TP53.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:32,160   copying build/lib/resolwe_bio/tests/files/bamclipper/input/TP53.bedpe -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamclipper/input
2025-06-01T13:09:32,163   copying build/lib/resolwe_bio/tests/files/rw reads_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,167   copying build/lib/resolwe_bio/tests/files/geneset_deseq2_up.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,171   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2
2025-06-01T13:09:32,174   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,189   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,193   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,196   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,199   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,202   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,206   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_paired_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,217   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,220   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,225   copying build/lib/resolwe_bio/tests/files/test_hisat2/output/hisat2_unmapped_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/output
2025-06-01T13:09:32,229   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_hisat2/input
2025-06-01T13:09:32,231   copying build/lib/resolwe_bio/tests/files/test_hisat2/input/g.enome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_hisat2/input
2025-06-01T13:09:32,234   copying build/lib/resolwe_bio/tests/files/promoters_chr21_subregion.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,246   copying build/lib/resolwe_bio/tests/files/cuffquant 1.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,250   copying build/lib/resolwe_bio/tests/files/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,255   copying build/lib/resolwe_bio/tests/files/old_encoding_transformed_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,258   copying build/lib/resolwe_bio/tests/files/6-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,263   copying build/lib/resolwe_bio/tests/files/edgeR.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,267   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseqc
2025-06-01T13:09:32,270   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:32,279   copying build/lib/resolwe_bio/tests/files/rnaseqc/output/chr1_region.bam.metrics_ENSEMBL.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:32,282   copying build/lib/resolwe_bio/tests/files/rnaseqc/output/chr1_region_ucsc.bam.metrics_UCSC.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseqc/output
2025-06-01T13:09:32,285   copying build/lib/resolwe_bio/tests/files/mappings_update.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,289   copying build/lib/resolwe_bio/tests/files/empty.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,293   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import
2025-06-01T13:09:32,309   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import/inputs
2025-06-01T13:09:32,311   copying build/lib/resolwe_bio/tests/files/geo_import/inputs/HuGene-2_0-st_mapping.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/inputs
2025-06-01T13:09:32,332   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,334   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/ERR019653.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,338   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE24998_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,341   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSM5252014_mapped_exp.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,352   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE166144_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,356   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/SRR13627912.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,359   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE172293_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,363   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/SRR14743655.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,366   copying build/lib/resolwe_bio/tests/files/geo_import/outputs/GSE176232_metadata.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/geo_import/outputs
2025-06-01T13:09:32,370   copying build/lib/resolwe_bio/tests/files/rRNA forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,373   copying build/lib/resolwe_bio/tests/files/hs_gatk_wgs_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,390   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow
2025-06-01T13:09:32,393   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:32,395   copying build/lib/resolwe_bio/tests/files/salmon_workflow/output/single_end_exp.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:32,398   copying build/lib/resolwe_bio/tests/files/salmon_workflow/output/paired_end_exp.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/output
2025-06-01T13:09:32,403   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,404   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,408   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,421   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs cdna.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,424   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,427   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,431   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs sim_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,435   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,438   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,444   copying build/lib/resolwe_bio/tests/files/salmon_workflow/input/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/salmon_workflow/input
2025-06-01T13:09:32,447   copying build/lib/resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,460   copying build/lib/resolwe_bio/tests/files/geneset.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,463   copying build/lib/resolwe_bio/tests/files/SRR2124780_1 1k.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,469   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs_workflow
2025-06-01T13:09:32,472   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/wgs_workflow/output
2025-06-01T13:09:32,474   copying build/lib/resolwe_bio/tests/files/wgs_workflow/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/wgs_workflow/output
2025-06-01T13:09:32,478   copying build/lib/resolwe_bio/tests/files/annotation dicty.gff.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,491   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall
2025-06-01T13:09:32,494   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,496   copying build/lib/resolwe_bio/tests/files/corall/output/dedup_paired_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,499   copying build/lib/resolwe_bio/tests/files/corall/output/single_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,503   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_exp_set.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,518   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_tpm.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,522   copying build/lib/resolwe_bio/tests/files/corall/output/mate2_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,525   copying build/lib/resolwe_bio/tests/files/corall/output/stringtie_transcripts.ctab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,529   copying build/lib/resolwe_bio/tests/files/corall/output/corall_workfow_expression_single.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,532   copying build/lib/resolwe_bio/tests/files/corall/output/mate1_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,535   copying build/lib/resolwe_bio/tests/files/corall/output/dedup_single_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,550   copying build/lib/resolwe_bio/tests/files/corall/output/corall_workfow_expression_paired.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/output
2025-06-01T13:09:32,554   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,556   copying build/lib/resolwe_bio/tests/files/corall/input/corall_single.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,560   copying build/lib/resolwe_bio/tests/files/corall/input/corall_paired.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,565   copying build/lib/resolwe_bio/tests/files/corall/input/corall_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,568   copying build/lib/resolwe_bio/tests/files/corall/input/hs_genome_chr2_1_45000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,572   copying build/lib/resolwe_bio/tests/files/corall/input/hs_annotation_chr2_1_45000.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,588   copying build/lib/resolwe_bio/tests/files/corall/input/corall_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,591   copying build/lib/resolwe_bio/tests/files/corall/input/Homo_sapiens_rRNA.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,595   copying build/lib/resolwe_bio/tests/files/corall/input/Homo_sapiens_globin_reference.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,600   copying build/lib/resolwe_bio/tests/files/corall/input/corall_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/corall/input
2025-06-01T13:09:32,604   copying build/lib/resolwe_bio/tests/files/seqtk_subsampled_reads_single_end.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,608   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba
2025-06-01T13:09:32,611   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:32,629   copying build/lib/resolwe_bio/tests/files/arriba/output/expected_discarded_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:32,632   copying build/lib/resolwe_bio/tests/files/arriba/output/expected_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/output
2025-06-01T13:09:32,637   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,639   copying build/lib/resolwe_bio/tests/files/arriba/input/reads_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,650   copying build/lib/resolwe_bio/tests/files/arriba/input/minigenome.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,653   copying build/lib/resolwe_bio/tests/files/arriba/input/aligned_samples.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,676   copying build/lib/resolwe_bio/tests/files/arriba/input/known_fusions.tsv.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,679   copying build/lib/resolwe_bio/tests/files/arriba/input/minigenome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,683   copying build/lib/resolwe_bio/tests/files/arriba/input/aligned_samples_error.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,701   copying build/lib/resolwe_bio/tests/files/arriba/input/reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/arriba/input
2025-06-01T13:09:32,711   copying build/lib/resolwe_bio/tests/files/5_prime_adapter.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,714   copying build/lib/resolwe_bio/tests/files/exp_7_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,717   copying build/lib/resolwe_bio/tests/files/prepeak_pe_tn5.tagAlign.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,723   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes
2025-06-01T13:09:32,726   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes/output
2025-06-01T13:09:32,728   copying build/lib/resolwe_bio/tests/files/workflow_wes/output/tp53_1fastqgz.gatkHC.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/output
2025-06-01T13:09:32,741   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:32,743   copying build/lib/resolwe_bio/tests/files/workflow_wes/input/TP53_2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:32,748   copying build/lib/resolwe_bio/tests/files/workflow_wes/input/TP53_1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/workflow_wes/input
2025-06-01T13:09:32,753   copying build/lib/resolwe_bio/tests/files/SRR2141558_chr1_20k_SJ.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,756   copying build/lib/resolwe_bio/tests/files/hisat2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,760   copying build/lib/resolwe_bio/tests/files/chr21_sorted_genes.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,764   copying build/lib/resolwe_bio/tests/files/purpureum_mappability_50.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,769   copying build/lib/resolwe_bio/tests/files/expression_bcm_rpkm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,778   copying build/lib/resolwe_bio/tests/files/geneset.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,784   copying build/lib/resolwe_bio/tests/files/exp_5_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,795   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads
2025-06-01T13:09:32,809   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads/output
2025-06-01T13:09:32,811   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/output/split_cigar_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/output
2025-06-01T13:09:32,817   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:32,819   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/input/chr1_1-15000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:32,823   copying build/lib/resolwe_bio/tests/files/splitNcigar_reads/input/chr1_500.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/splitNcigar_reads/input
2025-06-01T13:09:32,840   copying build/lib/resolwe_bio/tests/files/reads.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,844   copying build/lib/resolwe_bio/tests/files/exp_2_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,847   copying build/lib/resolwe_bio/tests/files/old_encoding_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,850   copying build/lib/resolwe_bio/tests/files/macs14_chr22.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,855   copying build/lib/resolwe_bio/tests/files/old_encoding1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,888   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling
2025-06-01T13:09:32,892   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,895   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1_markduplicates_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,899   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/chr1_19000_R1.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,904   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_bam.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,909   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations_geneset.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,913   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/output/mutations.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/output
2025-06-01T13:09:32,932   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,934   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/dbsnp-hg38.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,939   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,943   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/hg38.intervals.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,947   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,954   copying build/lib/resolwe_bio/tests/files/rnaseq_variantcalling/input/chr1_19000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/rnaseq_variantcalling/input
2025-06-01T13:09:32,959   copying build/lib/resolwe_bio/tests/files/exp_8_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,970   copying build/lib/resolwe_bio/tests/files/deseq2_count_matrix_normalized.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:32,974   copying build/lib/resolwe_bio/tests/files/HS chr21_ensembl.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,005   copying build/lib/resolwe_bio/tests/files/Test_S1_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,010   copying build/lib/resolwe_bio/tests/files/reads rsem2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,013   copying build/lib/resolwe_bio/tests/files/sp_test.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,019   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation
2025-06-01T13:09:33,022   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation/output
2025-06-01T13:09:33,025   copying build/lib/resolwe_bio/tests/files/variant_annotation/output/annotated_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/output
2025-06-01T13:09:33,031   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,049   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/dbsnp.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,054   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/clinvar_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,058   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/dbsnp_2.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,063   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/canonical_transcripts_ens109.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,081   copying build/lib/resolwe_bio/tests/files/variant_annotation/input/clinvar.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/variant_annotation/input
2025-06-01T13:09:33,086   copying build/lib/resolwe_bio/tests/files/deseq2_exp1.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,100   copying build/lib/resolwe_bio/tests/files/sp_test.gtf -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,105   copying build/lib/resolwe_bio/tests/files/reads-map-to-nowhere.fastq -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,108   copying build/lib/resolwe_bio/tests/files/cutadapt_paired_forward_trimmed.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,112   copying build/lib/resolwe_bio/tests/files/good.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,116   copying build/lib/resolwe_bio/tests/files/features.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,120   copying build/lib/resolwe_bio/tests/files/cutadapt_single1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,125   copying build/lib/resolwe_bio/tests/files/hs_single bbduk_star_htseq_reads_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,148   copying build/lib/resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R2.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,153   copying build/lib/resolwe_bio/tests/files/atac_seq_prepeak_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,157   copying build/lib/resolwe_bio/tests/files/mirna_featurecounts_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,160   copying build/lib/resolwe_bio/tests/files/reads rsem.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,164   copying build/lib/resolwe_bio/tests/files/chr1_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,168   copying build/lib/resolwe_bio/tests/files/geneset_2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,172   copying build/lib/resolwe_bio/tests/files/PGSC upload_sorted.gff3 -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,177   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp
2025-06-01T13:09:33,198   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:33,200   copying build/lib/resolwe_bio/tests/files/diff_exp/output/deseq2_volcano_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:33,204   copying build/lib/resolwe_bio/tests/files/diff_exp/output/diff_exp_check_types.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/output
2025-06-01T13:09:33,208   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:33,211   copying build/lib/resolwe_bio/tests/files/diff_exp/input/diff_exp_check_geneid_type.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:33,216   copying build/lib/resolwe_bio/tests/files/diff_exp/input/deseq2_output.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:33,220   copying build/lib/resolwe_bio/tests/files/diff_exp/input/deseq2_bad_output.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/diff_exp/input
2025-06-01T13:09:33,224   copying build/lib/resolwe_bio/tests/files/prepeak_se_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,289   copying build/lib/resolwe_bio/tests/files/chr1_paired_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,367   copying build/lib/resolwe_bio/tests/files/pca_plot.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,376   copying build/lib/resolwe_bio/tests/files/macs14_peaks.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,383   copying build/lib/resolwe_bio/tests/files/hs annotation.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,387   copying build/lib/resolwe_bio/tests/files/hg19_encode_blacklist_chr22.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,392   copying build/lib/resolwe_bio/tests/files/good.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,403   copying build/lib/resolwe_bio/tests/files/dbsnp_138.b37.chr2_small.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,417   copying build/lib/resolwe_bio/tests/files/exp4_cpm_ercc_sirv.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,420   copying build/lib/resolwe_bio/tests/files/genome_rsem.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,423   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq
2025-06-01T13:09:33,426   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:33,428   copying build/lib/resolwe_bio/tests/files/bamtofastq/output/output_reads_mate1.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:33,452   copying build/lib/resolwe_bio/tests/files/bamtofastq/output/output_reads_mate2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/output
2025-06-01T13:09:33,457   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/bamtofastq/input
2025-06-01T13:09:33,459   copying build/lib/resolwe_bio/tests/files/bamtofastq/input/alignment.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/bamtofastq/input
2025-06-01T13:09:33,478   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq
2025-06-01T13:09:33,481   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:33,483   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:33,486   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:33,490   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:33,493   copying build/lib/resolwe_bio/tests/files/nucl_seq/output/genome.dict -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/output
2025-06-01T13:09:33,509   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,510   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,514   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/malformed.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,517   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/empty.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,520   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/incomplete.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,523   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,527   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,541   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,545   copying build/lib/resolwe_bio/tests/files/nucl_seq/input/chrX_1_30000.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/nucl_seq/input
2025-06-01T13:09:33,549   copying build/lib/resolwe_bio/tests/files/atac_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,561   copying build/lib/resolwe_bio/tests/files/exp_8_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,565   copying build/lib/resolwe_bio/tests/files/cuffnorm_genes.fpkm_table -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,568   copying build/lib/resolwe_bio/tests/files/regtools_novel_SJ_from_bam.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,571   copying build/lib/resolwe_bio/tests/files/hs_paired_R1_workflow_bbduk_star_htseq_preprocessed_expressions.txt.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,588   copying build/lib/resolwe_bio/tests/files/feature counts_detect_strandedness_single.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,592   copying build/lib/resolwe_bio/tests/files/exp_4_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,596   copying build/lib/resolwe_bio/tests/files/rose2_enhancer_table.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,600   copying build/lib/resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R1.fq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,605   copying build/lib/resolwe_bio/tests/files/igv_human.lf.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,608   copying build/lib/resolwe_bio/tests/files/cuffdiff.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,611   copying build/lib/resolwe_bio/tests/files/rRNA_forw.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,631   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2
2025-06-01T13:09:33,634   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,636   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,639   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,642   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_index.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,646   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_use_SE_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,659   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_overlap_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,663   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,666   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_no_unal_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,670   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_paired_end_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,674   copying build/lib/resolwe_bio/tests/files/test_bowtie2/output/bowtie2_reads_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/output
2025-06-01T13:09:33,692   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/test_bowtie2/input
2025-06-01T13:09:33,694   copying build/lib/resolwe_bio/tests/files/test_bowtie2/input/g.en ome.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/test_bowtie2/input
2025-06-01T13:09:33,697   copying build/lib/resolwe_bio/tests/files/hs_paired_R1 workflow_bbduk_star_htseq.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,702   copying build/lib/resolwe_bio/tests/files/chr21_sorted_exons.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,705   copying build/lib/resolwe_bio/tests/files/reads_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,717   copying build/lib/resolwe_bio/tests/files/mappings.tab.zip -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,721   copying build/lib/resolwe_bio/tests/files/workflow_bbduk_star test.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,725   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ensembl-vep
2025-06-01T13:09:33,727   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ensembl-vep/output
2025-06-01T13:09:33,729   copying build/lib/resolwe_bio/tests/files/ensembl-vep/output/snp_annotated.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/output
2025-06-01T13:09:33,733   copying build/lib/resolwe_bio/tests/files/ensembl-vep/output/snp_annotated.vcf_summary.html -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/output
2025-06-01T13:09:33,737   copying build/lib/resolwe_bio/tests/files/ensembl-vep/output/cache_homo_sapiens_X.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/output
2025-06-01T13:09:33,771   copying build/lib/resolwe_bio/tests/files/ensembl-vep/output/snp_annotated.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/output
2025-06-01T13:09:33,775   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/ensembl-vep/input
2025-06-01T13:09:33,777   copying build/lib/resolwe_bio/tests/files/ensembl-vep/input/chrX_1_28000.fa.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/input
2025-06-01T13:09:33,781   copying build/lib/resolwe_bio/tests/files/ensembl-vep/input/snp.recalibrated_chrX_28000.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/input
2025-06-01T13:09:33,784   copying build/lib/resolwe_bio/tests/files/ensembl-vep/input/cache_homo_sapiens_X.tar.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/input
2025-06-01T13:09:33,826   copying build/lib/resolwe_bio/tests/files/ensembl-vep/input/snp.recalibrated_chrX_28000.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/ensembl-vep/input
2025-06-01T13:09:33,830   copying build/lib/resolwe_bio/tests/files/mirna_featurecounts_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,833   copying build/lib/resolwe_bio/tests/files/filtered_reads_trimmomatic_single.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,837   copying build/lib/resolwe_bio/tests/files/geneset_3.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,840   copying build/lib/resolwe_bio/tests/files/cuffnorm_exp_set.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,843   copying build/lib/resolwe_bio/tests/files/nanostring_qc_2.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,861   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation
2025-06-01T13:09:33,864   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:33,866   copying build/lib/resolwe_bio/tests/files/methylation/inputs/wrong_sample_name_Blue.idat.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:33,870   copying build/lib/resolwe_bio/tests/files/methylation/inputs/illumina_probe_ids_to_ensembl.tab -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/inputs
2025-06-01T13:09:33,874   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/methylation/output
2025-06-01T13:09:33,888   copying build/lib/resolwe_bio/tests/files/methylation/output/QC_data.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/methylation/output
2025-06-01T13:09:33,891   copying build/lib/resolwe_bio/tests/files/pca_plot_4.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,895   copying build/lib/resolwe_bio/tests/files/exp_3_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:33,899   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2
2025-06-01T13:09:33,902   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,904   copying build/lib/resolwe_bio/tests/files/macs2/output/batch_case_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,907   copying build/lib/resolwe_bio/tests/files/macs2/output/postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,920   copying build/lib/resolwe_bio/tests/files/macs2/output/batch_case_postpeak_qc_report.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,923   copying build/lib/resolwe_bio/tests/files/macs2/output/case_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,927   copying build/lib/resolwe_bio/tests/files/macs2/output/control_prepeak_qc.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,930   copying build/lib/resolwe_bio/tests/files/macs2/output/rose2_enhancer_table.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/output
2025-06-01T13:09:33,935   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:33,948   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675974_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:33,970   copying build/lib/resolwe_bio/tests/files/macs2/input/promoter_regions.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:33,974   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675976_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:34,024   copying build/lib/resolwe_bio/tests/files/macs2/input/paired_end_discodeum.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:34,029   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675975_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
2025-06-01T13:09:34,056   copying build/lib/resolwe_bio/tests/files/macs2/input/SRR5675973_chr17.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/macs2/input
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2025-06-01T13:09:34,080   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:34,082   copying build/lib/resolwe_bio/tests/files/snpeff/output/variants_set.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
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2025-06-01T13:09:34,089   copying build/lib/resolwe_bio/tests/files/snpeff/output/extracted_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:34,091   copying build/lib/resolwe_bio/tests/files/snpeff/output/filtered_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/output
2025-06-01T13:09:34,111   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:34,113   copying build/lib/resolwe_bio/tests/files/snpeff/input/dbsnp.vcf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/input
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2025-06-01T13:09:34,121   copying build/lib/resolwe_bio/tests/files/snpeff/input/set_of_genes.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/snpeff/input
2025-06-01T13:09:34,125   copying build/lib/resolwe_bio/tests/files/20Hr.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,128   copying build/lib/resolwe_bio/tests/files/feature_counts_rc_single.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,140   copying build/lib/resolwe_bio/tests/files/exp_1_rc.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,143   copying build/lib/resolwe_bio/tests/files/chr1_region.fasta.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,147   copying build/lib/resolwe_bio/tests/files/5-cuffquant.cxb -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,151   copying build/lib/resolwe_bio/tests/files/chr1_region.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
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2025-06-01T13:09:34,167   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:34,169   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:34,172   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes_pearson.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
2025-06-01T13:09:34,190   copying build/lib/resolwe_bio/tests/files/find_similar/outputs/similar_genes_euclidean.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/find_similar/outputs
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2025-06-01T13:09:34,199   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/rw_reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-06-01T13:09:34,203   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/fw_reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-06-01T13:09:34,206   copying build/lib/resolwe_bio/tests/files/merge-fastq/output/reads_merged.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/merge-fastq/output
2025-06-01T13:09:34,220   copying build/lib/resolwe_bio/tests/files/geneset_2.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,224   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/markduplicate
2025-06-01T13:09:34,226   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:34,228   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam.bai -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:34,232   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped_metrics.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:34,235   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam_stats.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:34,251   copying build/lib/resolwe_bio/tests/files/markduplicate/output/TP53.primerclipped.markduplicates.bam -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files/markduplicate/output
2025-06-01T13:09:34,255   copying build/lib/resolwe_bio/tests/files/chr21_sorted_gene_id_exon_id.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,259   copying build/lib/resolwe_bio/tests/files/s_1.tsv -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,262   copying build/lib/resolwe_bio/tests/files/go_genesets.mgi.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,266   copying build/lib/resolwe_bio/tests/files/nanostring_lane_attr.txt -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,269   copying build/lib/resolwe_bio/tests/files/chr1_region_UCSC.gtf.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,273   copying build/lib/resolwe_bio/tests/files/pca_plot_2.json.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,291   copying build/lib/resolwe_bio/tests/files/exp_2_tpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,294   copying build/lib/resolwe_bio/tests/files/features_gsea.tab.zip -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,298   copying build/lib/resolwe_bio/tests/files/Test_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,301   copying build/lib/resolwe_bio/tests/files/promoters_mm10_chr17_subregion.bed -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,305   copying build/lib/resolwe_bio/tests/files/reads_cpm.tab.gz -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/files
2025-06-01T13:09:34,321   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/unit
2025-06-01T13:09:34,322   copying build/lib/resolwe_bio/tests/unit/test_expression_filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/unit
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2025-06-01T13:09:34,356   copying build/lib/resolwe_bio/tests/workflows/test_fusion_calling_arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,360   copying build/lib/resolwe_bio/tests/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,363   copying build/lib/resolwe_bio/tests/workflows/test_atac_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,367   copying build/lib/resolwe_bio/tests/workflows/test_wgs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,381   copying build/lib/resolwe_bio/tests/workflows/test_rna_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,385   copying build/lib/resolwe_bio/tests/workflows/test_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,389   copying build/lib/resolwe_bio/tests/workflows/test_wes.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,392   copying build/lib/resolwe_bio/tests/workflows/test_cut_and_run.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,396   copying build/lib/resolwe_bio/tests/workflows/test_mirna.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,399   copying build/lib/resolwe_bio/tests/workflows/test_wgbs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/workflows
2025-06-01T13:09:34,403   copying build/lib/resolwe_bio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests
2025-06-01T13:09:34,421   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tests/processes
2025-06-01T13:09:34,423   copying build/lib/resolwe_bio/tests/processes/test_samtools.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,427   copying build/lib/resolwe_bio/tests/processes/test_files_to_reads.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,431   copying build/lib/resolwe_bio/tests/processes/test_chipseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,435   copying build/lib/resolwe_bio/tests/processes/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,439   copying build/lib/resolwe_bio/tests/processes/test_ml_ready.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,442   copying build/lib/resolwe_bio/tests/processes/test_junctions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,461   copying build/lib/resolwe_bio/tests/processes/test_wgs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,465   copying build/lib/resolwe_bio/tests/processes/test_arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,468   copying build/lib/resolwe_bio/tests/processes/test_annotation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,472   copying build/lib/resolwe_bio/tests/processes/test_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,476   copying build/lib/resolwe_bio/tests/processes/test_enrichment.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,480   copying build/lib/resolwe_bio/tests/processes/test_metadata_upload.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,483   copying build/lib/resolwe_bio/tests/processes/test_pca.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,487   copying build/lib/resolwe_bio/tests/processes/test_support_processors.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,492   copying build/lib/resolwe_bio/tests/processes/test_alignment.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,496   copying build/lib/resolwe_bio/tests/processes/test_processor.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,508   copying build/lib/resolwe_bio/tests/processes/test_import.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,512   copying build/lib/resolwe_bio/tests/processes/test_reads_filtering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,517   copying build/lib/resolwe_bio/tests/processes/test_microarray.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,521   copying build/lib/resolwe_bio/tests/processes/test_upload.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,525   copying build/lib/resolwe_bio/tests/processes/test_variant_calling.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,531   copying build/lib/resolwe_bio/tests/processes/test_clustering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,536   copying build/lib/resolwe_bio/tests/processes/test_diff_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,540   copying build/lib/resolwe_bio/tests/processes/test_expression_aggregator.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,543   copying build/lib/resolwe_bio/tests/processes/test_plots.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,546   copying build/lib/resolwe_bio/tests/processes/test_wgbs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tests/processes
2025-06-01T13:09:34,559   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb
2025-06-01T13:09:34,560   copying build/lib/resolwe_bio/kb/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,565   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/tests
2025-06-01T13:09:34,567   copying build/lib/resolwe_bio/kb/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-06-01T13:09:34,570   copying build/lib/resolwe_bio/kb/tests/test_feature.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-06-01T13:09:34,574   copying build/lib/resolwe_bio/kb/tests/test_import_kb.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-06-01T13:09:34,577   copying build/lib/resolwe_bio/kb/tests/test_mapping.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/tests
2025-06-01T13:09:34,591   copying build/lib/resolwe_bio/kb/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,594   copying build/lib/resolwe_bio/kb/backends.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,597   copying build/lib/resolwe_bio/kb/listener_plugin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,601   copying build/lib/resolwe_bio/kb/views.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,605   copying build/lib/resolwe_bio/kb/admin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,609   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations
2025-06-01T13:09:34,611   copying build/lib/resolwe_bio/kb/migrations/0005_species.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,630   copying build/lib/resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,634   copying build/lib/resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,637   copying build/lib/resolwe_bio/kb/migrations/0014_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,641   copying build/lib/resolwe_bio/kb/migrations/0003_add_map_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,644   copying build/lib/resolwe_bio/kb/migrations/0001_initial.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,648   copying build/lib/resolwe_bio/kb/migrations/0013_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,659   copying build/lib/resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,662   copying build/lib/resolwe_bio/kb/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,665   copying build/lib/resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,668   copying build/lib/resolwe_bio/kb/migrations/0009_full_text_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,672   copying build/lib/resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,680   copying build/lib/resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,683   copying build/lib/resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,686   copying build/lib/resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,690   copying build/lib/resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,693   copying build/lib/resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,697   copying build/lib/resolwe_bio/kb/migrations/triggers_feature_2.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,710   copying build/lib/resolwe_bio/kb/migrations/triggers_feature.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/migrations
2025-06-01T13:09:34,713   copying build/lib/resolwe_bio/kb/pagination.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,716   copying build/lib/resolwe_bio/kb/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,720   copying build/lib/resolwe_bio/kb/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,724   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management
2025-06-01T13:09:34,726   copying build/lib/resolwe_bio/kb/management/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management
2025-06-01T13:09:34,730   creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands
2025-06-01T13:09:34,748   copying build/lib/resolwe_bio/kb/management/commands/insert_mappings.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-06-01T13:09:34,752   copying build/lib/resolwe_bio/kb/management/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-06-01T13:09:34,755   copying build/lib/resolwe_bio/kb/management/commands/insert_features.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-06-01T13:09:34,759   copying build/lib/resolwe_bio/kb/management/commands/utils.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb/management/commands
2025-06-01T13:09:34,762   copying build/lib/resolwe_bio/kb/serializers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/kb
2025-06-01T13:09:34,765   copying build/lib/resolwe_bio/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-06-01T13:09:34,769   creating build/bdist.linux-armv7l/wheel/resolwe_bio/process
2025-06-01T13:09:34,778   copying build/lib/resolwe_bio/process/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-06-01T13:09:34,781   copying build/lib/resolwe_bio/process/runtime.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-06-01T13:09:34,784   copying build/lib/resolwe_bio/process/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/process
2025-06-01T13:09:34,789   creating build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors
2025-06-01T13:09:34,790   copying build/lib/resolwe_bio/descriptors/geneset.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-06-01T13:09:34,794   copying build/lib/resolwe_bio/descriptors/reads.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-06-01T13:09:34,808   copying build/lib/resolwe_bio/descriptors/diffexp.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-06-01T13:09:34,811   copying build/lib/resolwe_bio/descriptors/dicty_time_series.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/descriptors
2025-06-01T13:09:34,815   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes
2025-06-01T13:09:34,819   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/samtools
2025-06-01T13:09:34,821   copying build/lib/resolwe_bio/processes/samtools/samtools_depth.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-06-01T13:09:34,825   copying build/lib/resolwe_bio/processes/samtools/samtools_coverage.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-06-01T13:09:34,830   copying build/lib/resolwe_bio/processes/samtools/samtools_bedcov.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-06-01T13:09:34,833   copying build/lib/resolwe_bio/processes/samtools/samtools_mpileup.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-06-01T13:09:34,837   copying build/lib/resolwe_bio/processes/samtools/samtools_view.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/samtools
2025-06-01T13:09:34,858   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS
2025-06-01T13:09:34,859   copying build/lib/resolwe_bio/processes/WGBS/hmr.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-06-01T13:09:34,862   copying build/lib/resolwe_bio/processes/WGBS/walt_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-06-01T13:09:34,866   copying build/lib/resolwe_bio/processes/WGBS/bsrate.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-06-01T13:09:34,869   copying build/lib/resolwe_bio/processes/WGBS/walt.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-06-01T13:09:34,872   copying build/lib/resolwe_bio/processes/WGBS/methcounts.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/WGBS
2025-06-01T13:09:34,876   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/junctions
2025-06-01T13:09:34,878   copying build/lib/resolwe_bio/processes/junctions/regtools.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/junctions
2025-06-01T13:09:34,892   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows
2025-06-01T13:09:34,894   copying build/lib/resolwe_bio/processes/workflows/wgbs.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,898   copying build/lib/resolwe_bio/processes/workflows/wgs.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,902   copying build/lib/resolwe_bio/processes/workflows/corall.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,906   copying build/lib/resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,910   copying build/lib/resolwe_bio/processes/workflows/wes.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,914   copying build/lib/resolwe_bio/processes/workflows/atac_seq.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,918   copying build/lib/resolwe_bio/processes/workflows/chemut.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,938   copying build/lib/resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,942   copying build/lib/resolwe_bio/processes/workflows/geo_import.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,945   copying build/lib/resolwe_bio/processes/workflows/mirna.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,949   copying build/lib/resolwe_bio/processes/workflows/wgs_gvcf.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,954   copying build/lib/resolwe_bio/processes/workflows/chip_seq.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,958   copying build/lib/resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,963   copying build/lib/resolwe_bio/processes/workflows/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,966   copying build/lib/resolwe_bio/processes/workflows/bbduk_star.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,970   copying build/lib/resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,974   copying build/lib/resolwe_bio/processes/workflows/quantseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,991   copying build/lib/resolwe_bio/processes/workflows/cut_and_run.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/workflows
2025-06-01T13:09:34,995   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests
2025-06-01T13:09:34,997   copying build/lib/resolwe_bio/processes/unit_tests/test_basic_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-06-01T13:09:35,001   copying build/lib/resolwe_bio/processes/unit_tests/test_disabled_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-06-01T13:09:35,004   copying build/lib/resolwe_bio/processes/unit_tests/test_list.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-06-01T13:09:35,007   copying build/lib/resolwe_bio/processes/unit_tests/test_sleep_progress.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-06-01T13:09:35,010   copying build/lib/resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/unit_tests
2025-06-01T13:09:35,029   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray
2025-06-01T13:09:35,030   copying build/lib/resolwe_bio/processes/microarray/methylation_arrays.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-06-01T13:09:35,034   copying build/lib/resolwe_bio/processes/microarray/microarray_expression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-06-01T13:09:35,038   copying build/lib/resolwe_bio/processes/microarray/map_probes.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/microarray
2025-06-01T13:09:35,042   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/fusion_calling
2025-06-01T13:09:35,044   copying build/lib/resolwe_bio/processes/fusion_calling/arriba.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/fusion_calling
2025-06-01T13:09:35,049   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering
2025-06-01T13:09:35,058   copying build/lib/resolwe_bio/processes/clustering/find_similar.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-06-01T13:09:35,063   copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-06-01T13:09:35,067   copying build/lib/resolwe_bio/processes/clustering/pca.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-06-01T13:09:35,072   copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/clustering
2025-06-01T13:09:35,076   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,078   copying build/lib/resolwe_bio/processes/reads_processing/trimgalore.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,083   copying build/lib/resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,086   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,091   copying build/lib/resolwe_bio/processes/reads_processing/bamclipper.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,095   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,099   copying build/lib/resolwe_bio/processes/reads_processing/xengsort.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,111   copying build/lib/resolwe_bio/processes/reads_processing/markduplicates.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,115   copying build/lib/resolwe_bio/processes/reads_processing/cutadapt.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,119   copying build/lib/resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,123   copying build/lib/resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,126   copying build/lib/resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,130   copying build/lib/resolwe_bio/processes/reads_processing/bbduk.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,135   copying build/lib/resolwe_bio/processes/reads_processing/bqsr.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,139   copying build/lib/resolwe_bio/processes/reads_processing/split_ncigar.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/reads_processing
2025-06-01T13:09:35,152   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/annotation
2025-06-01T13:09:35,153   copying build/lib/resolwe_bio/processes/annotation/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/annotation
2025-06-01T13:09:35,157   copying build/lib/resolwe_bio/processes/annotation/variant_annotation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/annotation
2025-06-01T13:09:35,161   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors
2025-06-01T13:09:35,163   copying build/lib/resolwe_bio/processes/support_processors/archive.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,167   copying build/lib/resolwe_bio/processes/support_processors/multiqc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,171   copying build/lib/resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,180   copying build/lib/resolwe_bio/processes/support_processors/qorts_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,184   copying build/lib/resolwe_bio/processes/support_processors/umi_tools.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,188   copying build/lib/resolwe_bio/processes/support_processors/library_strandedness.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,191   copying build/lib/resolwe_bio/processes/support_processors/bam_conversion.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,195   copying build/lib/resolwe_bio/processes/support_processors/seqtk.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,199   copying build/lib/resolwe_bio/processes/support_processors/rnaseqc_qc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,211   copying build/lib/resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,214   copying build/lib/resolwe_bio/processes/support_processors/wgs_metrics.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,218   copying build/lib/resolwe_bio/processes/support_processors/gff_to_gtf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,221   copying build/lib/resolwe_bio/processes/support_processors/spikeins_qc.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,224   copying build/lib/resolwe_bio/processes/support_processors/gtf_to_bed.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,229   copying build/lib/resolwe_bio/processes/support_processors/alignment_summary.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,234   copying build/lib/resolwe_bio/processes/support_processors/mutations_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,238   copying build/lib/resolwe_bio/processes/support_processors/merge_samples.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,242   copying build/lib/resolwe_bio/processes/support_processors/insert_size.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/support_processors
2025-06-01T13:09:35,256   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data
2025-06-01T13:09:35,257   copying build/lib/resolwe_bio/processes/import_data/expressions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,262   copying build/lib/resolwe_bio/processes/import_data/metadata.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,266   copying build/lib/resolwe_bio/processes/import_data/mappability_tab.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,270   copying build/lib/resolwe_bio/processes/import_data/geneset.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,275   copying build/lib/resolwe_bio/processes/import_data/go_obo.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,288   copying build/lib/resolwe_bio/processes/import_data/annotation_bedpe.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,291   copying build/lib/resolwe_bio/processes/import_data/nucleotide_seq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,294   copying build/lib/resolwe_bio/processes/import_data/bam.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,298   copying build/lib/resolwe_bio/processes/import_data/annotation.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,303   copying build/lib/resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,307   copying build/lib/resolwe_bio/processes/import_data/abstract_bed.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,310   copying build/lib/resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,313   copying build/lib/resolwe_bio/processes/import_data/sra_file.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,331   copying build/lib/resolwe_bio/processes/import_data/ml_ready_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,335   copying build/lib/resolwe_bio/processes/import_data/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,338   copying build/lib/resolwe_bio/processes/import_data/variants_vcf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,341   copying build/lib/resolwe_bio/processes/import_data/differential_exp.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,345   copying build/lib/resolwe_bio/processes/import_data/basespace.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,349   copying build/lib/resolwe_bio/processes/import_data/seq_reads.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,353   copying build/lib/resolwe_bio/processes/import_data/methylation_array_idat.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,356   copying build/lib/resolwe_bio/processes/import_data/go_gaf.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,369   copying build/lib/resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,373   copying build/lib/resolwe_bio/processes/import_data/annotation_bed.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/import_data
2025-06-01T13:09:35,377   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression
2025-06-01T13:09:35,379   copying build/lib/resolwe_bio/processes/expression/expression_aggregator.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,384   copying build/lib/resolwe_bio/processes/expression/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,388   copying build/lib/resolwe_bio/processes/expression/dicty_bcm.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,391   copying build/lib/resolwe_bio/processes/expression/featureCounts.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,395   copying build/lib/resolwe_bio/processes/expression/salmon_index.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,399   copying build/lib/resolwe_bio/processes/expression/merge_expressions.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,411   copying build/lib/resolwe_bio/processes/expression/cuffquant.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,414   copying build/lib/resolwe_bio/processes/expression/mappability.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,418   copying build/lib/resolwe_bio/processes/expression/cuffnorm.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,422   copying build/lib/resolwe_bio/processes/expression/cufflinks.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,426   copying build/lib/resolwe_bio/processes/expression/salmon.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,430   copying build/lib/resolwe_bio/processes/expression/star_quantification.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/expression
2025-06-01T13:09:35,435   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,449   copying build/lib/resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,453   copying build/lib/resolwe_bio/processes/chip_seq/rose2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,457   copying build/lib/resolwe_bio/processes/chip_seq/macs2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,461   copying build/lib/resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,466   copying build/lib/resolwe_bio/processes/chip_seq/macs14.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,469   copying build/lib/resolwe_bio/processes/chip_seq/chipqc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,473   copying build/lib/resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/chip_seq
2025-06-01T13:09:35,478   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/plots
2025-06-01T13:09:35,488   copying build/lib/resolwe_bio/processes/plots/bamplot.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/plots
2025-06-01T13:09:35,492   copying build/lib/resolwe_bio/processes/plots/bamliquidator.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/plots
2025-06-01T13:09:35,497   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment
2025-06-01T13:09:35,499   copying build/lib/resolwe_bio/processes/alignment/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,502   copying build/lib/resolwe_bio/processes/alignment/hisat2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,505   copying build/lib/resolwe_bio/processes/alignment/bwamem2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,509   copying build/lib/resolwe_bio/processes/alignment/bowtie.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,513   copying build/lib/resolwe_bio/processes/alignment/star_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,530   copying build/lib/resolwe_bio/processes/alignment/bwamem2.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,534   copying build/lib/resolwe_bio/processes/alignment/bowtie2_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,538   copying build/lib/resolwe_bio/processes/alignment/hisat2.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,542   copying build/lib/resolwe_bio/processes/alignment/bowtie_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,545   copying build/lib/resolwe_bio/processes/alignment/bwa.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,550   copying build/lib/resolwe_bio/processes/alignment/star.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,554   copying build/lib/resolwe_bio/processes/alignment/bwa_index.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/alignment
2025-06-01T13:09:35,563   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression
2025-06-01T13:09:35,565   copying build/lib/resolwe_bio/processes/differential_expression/edgeR.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-06-01T13:09:35,580   copying build/lib/resolwe_bio/processes/differential_expression/abstract.yml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-06-01T13:09:35,583   copying build/lib/resolwe_bio/processes/differential_expression/deseq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-06-01T13:09:35,588   copying build/lib/resolwe_bio/processes/differential_expression/cuffdiff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/differential_expression
2025-06-01T13:09:35,593   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,595   copying build/lib/resolwe_bio/processes/variant_calling/vc_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,600   copying build/lib/resolwe_bio/processes/variant_calling/variants_to_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,611   copying build/lib/resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,614   copying build/lib/resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,619   copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,623   copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,627   copying build/lib/resolwe_bio/processes/variant_calling/vqsr.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,632   copying build/lib/resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,636   copying build/lib/resolwe_bio/processes/variant_calling/snpeff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,651   copying build/lib/resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,655   copying build/lib/resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,659   copying build/lib/resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,664   copying build/lib/resolwe_bio/processes/variant_calling/gatk4.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,667   copying build/lib/resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,671   copying build/lib/resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/variant_calling
2025-06-01T13:09:35,676   creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/go_enrichment
2025-06-01T13:09:35,688   copying build/lib/resolwe_bio/processes/go_enrichment/go.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/processes/go_enrichment
2025-06-01T13:09:35,694   creating build/bdist.linux-armv7l/wheel/resolwe_bio/migrations
2025-06-01T13:09:35,696   copying build/lib/resolwe_bio/migrations/remove_resolwe_indexes.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,699   copying build/lib/resolwe_bio/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,703   copying build/lib/resolwe_bio/migrations/resolwe_indexes_2.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,706   copying build/lib/resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,712   copying build/lib/resolwe_bio/migrations/0006_update_sql_methods.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,716   copying build/lib/resolwe_bio/migrations/resolwe_indexes_3.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,720   copying build/lib/resolwe_bio/migrations/0002_metadata_table_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,730   copying build/lib/resolwe_bio/migrations/resolwe_indexes.sql -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,734   copying build/lib/resolwe_bio/migrations/0003_sample_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,737   copying build/lib/resolwe_bio/migrations/0005_remove_descriptor_indices.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,741   copying build/lib/resolwe_bio/migrations/0004_merge_fastq_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/migrations
2025-06-01T13:09:35,745   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants
2025-06-01T13:09:35,758   copying build/lib/resolwe_bio/variants/filters.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,763   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants/tests
2025-06-01T13:09:35,765   copying build/lib/resolwe_bio/variants/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-06-01T13:09:35,769   copying build/lib/resolwe_bio/variants/tests/test_process.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-06-01T13:09:35,773   copying build/lib/resolwe_bio/variants/tests/test_variant.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/tests
2025-06-01T13:09:35,778   copying build/lib/resolwe_bio/variants/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,782   copying build/lib/resolwe_bio/variants/listener_plugin.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,800   copying build/lib/resolwe_bio/variants/views.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,805   creating build/bdist.linux-armv7l/wheel/resolwe_bio/variants/migrations
2025-06-01T13:09:35,806   copying build/lib/resolwe_bio/variants/migrations/0001_initial.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,811   copying build/lib/resolwe_bio/variants/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,814   copying build/lib/resolwe_bio/variants/migrations/0005_alter_variantannotation_clinical_diagnosis.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,817   copying build/lib/resolwe_bio/variants/migrations/0009_alter_variant_alternative_alter_variant_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,828   copying build/lib/resolwe_bio/variants/migrations/0002_rename_unfiltered_allele_depth_variantcall_alternative_allele_depth.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,831   copying build/lib/resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,834   copying build/lib/resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,838   copying build/lib/resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,841   copying build/lib/resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,844   copying build/lib/resolwe_bio/variants/migrations/0008_alter_variantannotation_clinical_diagnosis_and_more.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants/migrations
2025-06-01T13:09:35,847   copying build/lib/resolwe_bio/variants/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,851   copying build/lib/resolwe_bio/variants/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,863   copying build/lib/resolwe_bio/variants/serializers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/variants
2025-06-01T13:09:35,869   creating build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters
2025-06-01T13:09:35,871   copying build/lib/resolwe_bio/expression_filters/__init__.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-06-01T13:09:35,875   copying build/lib/resolwe_bio/expression_filters/relation.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-06-01T13:09:35,878   copying build/lib/resolwe_bio/expression_filters/sample.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/expression_filters
2025-06-01T13:09:35,891   copying build/lib/resolwe_bio/models.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-06-01T13:09:35,896   creating build/bdist.linux-armv7l/wheel/resolwe_bio/tools
2025-06-01T13:09:35,898   copying build/lib/resolwe_bio/tools/merge_chipqc_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,902   copying build/lib/resolwe_bio/tools/spikeins_report.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,905   copying build/lib/resolwe_bio/tools/extract_umi.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,911   copying build/lib/resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,914   copying build/lib/resolwe_bio/tools/deseq.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,918   copying build/lib/resolwe_bio/tools/xexpression.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,931   copying build/lib/resolwe_bio/tools/mergebowtiestats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,935   copying build/lib/resolwe_bio/tools/plot_enhancers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,938   copying build/lib/resolwe_bio/tools/expression2storage.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,942   copying build/lib/resolwe_bio/tools/sesame.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,946   copying build/lib/resolwe_bio/tools/unique_sample_names.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,949   copying build/lib/resolwe_bio/tools/mergebowtie2stats_paired.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,952   copying build/lib/resolwe_bio/tools/bamliquidator_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,961   copying build/lib/resolwe_bio/tools/parse_library_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,964   copying build/lib/resolwe_bio/tools/postprocess_snpeff.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,968   copying build/lib/resolwe_bio/tools/mappability.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,971   copying build/lib/resolwe_bio/tools/expressionmerge_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,975   copying build/lib/resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,978   copying build/lib/resolwe_bio/tools/parse_diffexp.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,982   copying build/lib/resolwe_bio/tools/create_gene_sets.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,985   copying build/lib/resolwe_bio/tools/tximport_summarize.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:35,997   copying build/lib/resolwe_bio/tools/fastqc.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,001   copying build/lib/resolwe_bio/tools/parse_encoding_type.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,004   copying build/lib/resolwe_bio/tools/mergebowtie2stats.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,007   copying build/lib/resolwe_bio/tools/expressionmerge.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,011   copying build/lib/resolwe_bio/tools/run_edger.R -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,014   copying build/lib/resolwe_bio/tools/spikein_pairwise.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,018   copying build/lib/resolwe_bio/tools/utils.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,021   copying build/lib/resolwe_bio/tools/gff3_to_gtf.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,024   copying build/lib/resolwe_bio/tools/convert_DE_excel_table.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,030   copying build/lib/resolwe_bio/tools/parse_cuffnorm.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,033   copying build/lib/resolwe_bio/tools/star_sj_to_bed12.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,036   copying build/lib/resolwe_bio/tools/detect_strandedness.sh -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,050   copying build/lib/resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,054   copying build/lib/resolwe_bio/tools/novel_splice_junctions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,057   copying build/lib/resolwe_bio/tools/cufflinks_sample_groups.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,060   copying build/lib/resolwe_bio/tools/make_igv_session_archive.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,064   copying build/lib/resolwe_bio/tools/cuffnorm_group_labels.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,067   copying build/lib/resolwe_bio/tools/validate_fastq.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio/tools
2025-06-01T13:09:36,071   copying build/lib/resolwe_bio/apps.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-06-01T13:09:36,090   copying build/lib/resolwe_bio/extensions.py -> build/bdist.linux-armv7l/wheel/./resolwe_bio
2025-06-01T13:09:36,095   creating build/bdist.linux-armv7l/wheel/resolwe_bio/fixtures
2025-06-01T13:09:36,097   copying build/lib/resolwe_bio/fixtures/relationtypes.yaml -> build/bdist.linux-armv7l/wheel/./resolwe_bio/fixtures
2025-06-01T13:09:36,100   running install_egg_info
2025-06-01T13:09:36,130   Copying resolwe_bio.egg-info to build/bdist.linux-armv7l/wheel/./resolwe_bio-63.1.0-py3.11.egg-info
2025-06-01T13:09:36,153   running install_scripts
2025-06-01T13:09:36,179   creating build/bdist.linux-armv7l/wheel/resolwe_bio-63.1.0.dist-info/WHEEL
2025-06-01T13:09:36,184   creating '/tmp/pip-wheel-y4lxys0i/.tmp-jgpedmey/resolwe_bio-63.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-01T13:09:36,188   adding 'resolwe_bio/__init__.py'
2025-06-01T13:09:36,190   adding 'resolwe_bio/apps.py'
2025-06-01T13:09:36,208   adding 'resolwe_bio/extensions.py'
2025-06-01T13:09:36,211   adding 'resolwe_bio/filters.py'
2025-06-01T13:09:36,213   adding 'resolwe_bio/models.py'
2025-06-01T13:09:36,216   adding 'resolwe_bio/descriptors/dicty_time_series.yml'
2025-06-01T13:09:36,218   adding 'resolwe_bio/descriptors/diffexp.yml'
2025-06-01T13:09:36,228   adding 'resolwe_bio/descriptors/geneset.yml'
2025-06-01T13:09:36,230   adding 'resolwe_bio/descriptors/reads.yml'
2025-06-01T13:09:36,234   adding 'resolwe_bio/expression_filters/__init__.py'
2025-06-01T13:09:36,236   adding 'resolwe_bio/expression_filters/relation.py'
2025-06-01T13:09:36,249   adding 'resolwe_bio/expression_filters/sample.py'
2025-06-01T13:09:36,252   adding 'resolwe_bio/fixtures/relationtypes.yaml'
2025-06-01T13:09:36,255   adding 'resolwe_bio/kb/__init__.py'
2025-06-01T13:09:36,257   adding 'resolwe_bio/kb/admin.py'
2025-06-01T13:09:36,263   adding 'resolwe_bio/kb/apps.py'
2025-06-01T13:09:36,265   adding 'resolwe_bio/kb/backends.py'
2025-06-01T13:09:36,267   adding 'resolwe_bio/kb/filters.py'
2025-06-01T13:09:36,279   adding 'resolwe_bio/kb/listener_plugin.py'
2025-06-01T13:09:36,281   adding 'resolwe_bio/kb/models.py'
2025-06-01T13:09:36,283   adding 'resolwe_bio/kb/pagination.py'
2025-06-01T13:09:36,285   adding 'resolwe_bio/kb/serializers.py'
2025-06-01T13:09:36,287   adding 'resolwe_bio/kb/views.py'
2025-06-01T13:09:36,295   adding 'resolwe_bio/kb/management/__init__.py'
2025-06-01T13:09:36,298   adding 'resolwe_bio/kb/management/commands/__init__.py'
2025-06-01T13:09:36,301   adding 'resolwe_bio/kb/management/commands/insert_features.py'
2025-06-01T13:09:36,311   adding 'resolwe_bio/kb/management/commands/insert_mappings.py'
2025-06-01T13:09:36,313   adding 'resolwe_bio/kb/management/commands/utils.py'
2025-06-01T13:09:36,316   adding 'resolwe_bio/kb/migrations/0001_initial.py'
2025-06-01T13:09:36,318   adding 'resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py'
2025-06-01T13:09:36,326   adding 'resolwe_bio/kb/migrations/0002_alter_field_max_length.py'
2025-06-01T13:09:36,329   adding 'resolwe_bio/kb/migrations/0003_add_map_index.py'
2025-06-01T13:09:36,330   adding 'resolwe_bio/kb/migrations/0004_add_unique_together.py'
2025-06-01T13:09:36,332   adding 'resolwe_bio/kb/migrations/0005_species.py'
2025-06-01T13:09:36,334   adding 'resolwe_bio/kb/migrations/0006_feature_fullname_300.py'
2025-06-01T13:09:36,336   adding 'resolwe_bio/kb/migrations/0007_feature_fullname_350.py'
2025-06-01T13:09:36,338   adding 'resolwe_bio/kb/migrations/0008_callable_defaults.py'
2025-06-01T13:09:36,349   adding 'resolwe_bio/kb/migrations/0009_full_text_search.py'
2025-06-01T13:09:36,350   adding 'resolwe_bio/kb/migrations/0010_update_indexes_constraints.py'
2025-06-01T13:09:36,352   adding 'resolwe_bio/kb/migrations/0011_feature_type_index.py'
2025-06-01T13:09:36,354   adding 'resolwe_bio/kb/migrations/0012_update_feature_search.py'
2025-06-01T13:09:36,356   adding 'resolwe_bio/kb/migrations/0013_update_feature_search.py'
2025-06-01T13:09:36,367   adding 'resolwe_bio/kb/migrations/0014_update_feature_search.py'
2025-06-01T13:09:36,369   adding 'resolwe_bio/kb/migrations/__init__.py'
2025-06-01T13:09:36,370   adding 'resolwe_bio/kb/migrations/reverse_triggers_feature.sql'
2025-06-01T13:09:36,372   adding 'resolwe_bio/kb/migrations/triggers_feature.sql'
2025-06-01T13:09:36,374   adding 'resolwe_bio/kb/migrations/triggers_feature_2.sql'
2025-06-01T13:09:36,376   adding 'resolwe_bio/kb/tests/__init__.py'
2025-06-01T13:09:36,379   adding 'resolwe_bio/kb/tests/test_feature.py'
2025-06-01T13:09:36,384   adding 'resolwe_bio/kb/tests/test_import_kb.py'
2025-06-01T13:09:36,388   adding 'resolwe_bio/kb/tests/test_mapping.py'
2025-06-01T13:09:36,397   adding 'resolwe_bio/migrations/0001_squashed_0015_sample_indices.py'
2025-06-01T13:09:36,398   adding 'resolwe_bio/migrations/0002_metadata_table_type.py'
2025-06-01T13:09:36,408   adding 'resolwe_bio/migrations/0003_sample_indices.py'
2025-06-01T13:09:36,410   adding 'resolwe_bio/migrations/0004_merge_fastq_type.py'
2025-06-01T13:09:36,412   adding 'resolwe_bio/migrations/0005_remove_descriptor_indices.py'
2025-06-01T13:09:36,414   adding 'resolwe_bio/migrations/0006_update_sql_methods.py'
2025-06-01T13:09:36,416   adding 'resolwe_bio/migrations/__init__.py'
2025-06-01T13:09:36,418   adding 'resolwe_bio/migrations/remove_resolwe_indexes.sql'
2025-06-01T13:09:36,421   adding 'resolwe_bio/migrations/resolwe_indexes.sql'
2025-06-01T13:09:36,425   adding 'resolwe_bio/migrations/resolwe_indexes_2.sql'
2025-06-01T13:09:36,429   adding 'resolwe_bio/migrations/resolwe_indexes_3.sql'
2025-06-01T13:09:36,438   adding 'resolwe_bio/process/__init__.py'
2025-06-01T13:09:36,440   adding 'resolwe_bio/process/models.py'
2025-06-01T13:09:36,459   adding 'resolwe_bio/process/runtime.py'
2025-06-01T13:09:36,464   adding 'resolwe_bio/processes/WGBS/bsrate.py'
2025-06-01T13:09:36,466   adding 'resolwe_bio/processes/WGBS/hmr.yml'
2025-06-01T13:09:36,469   adding 'resolwe_bio/processes/WGBS/methcounts.yml'
2025-06-01T13:09:36,473   adding 'resolwe_bio/processes/WGBS/walt.yml'
2025-06-01T13:09:36,489   adding 'resolwe_bio/processes/WGBS/walt_index.py'
2025-06-01T13:09:36,492   adding 'resolwe_bio/processes/alignment/abstract.yml'
2025-06-01T13:09:36,497   adding 'resolwe_bio/processes/alignment/bowtie.yml'
2025-06-01T13:09:36,500   adding 'resolwe_bio/processes/alignment/bowtie2_index.py'
2025-06-01T13:09:36,519   adding 'resolwe_bio/processes/alignment/bowtie_index.py'
2025-06-01T13:09:36,522   adding 'resolwe_bio/processes/alignment/bwa.yml'
2025-06-01T13:09:36,525   adding 'resolwe_bio/processes/alignment/bwa_index.py'
2025-06-01T13:09:36,529   adding 'resolwe_bio/processes/alignment/bwamem2.yml'
2025-06-01T13:09:36,532   adding 'resolwe_bio/processes/alignment/bwamem2_index.py'
2025-06-01T13:09:36,550   adding 'resolwe_bio/processes/alignment/hisat2.yml'
2025-06-01T13:09:36,553   adding 'resolwe_bio/processes/alignment/hisat2_index.py'
2025-06-01T13:09:36,558   adding 'resolwe_bio/processes/alignment/star.py'
2025-06-01T13:09:36,561   adding 'resolwe_bio/processes/alignment/star_index.py'
2025-06-01T13:09:36,570   adding 'resolwe_bio/processes/annotation/abstract.yml'
2025-06-01T13:09:36,574   adding 'resolwe_bio/processes/annotation/variant_annotation.py'
2025-06-01T13:09:36,591   adding 'resolwe_bio/processes/chip_seq/chipqc.py'
2025-06-01T13:09:36,593   adding 'resolwe_bio/processes/chip_seq/macs14.yml'
2025-06-01T13:09:36,603   adding 'resolwe_bio/processes/chip_seq/macs2.py'
2025-06-01T13:09:36,621   adding 'resolwe_bio/processes/chip_seq/macs2_batch.yml'
2025-06-01T13:09:36,626   adding 'resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml'
2025-06-01T13:09:36,629   adding 'resolwe_bio/processes/chip_seq/prepeak_qc.yml'
2025-06-01T13:09:36,650   adding 'resolwe_bio/processes/chip_seq/rose2.py'
2025-06-01T13:09:36,654   adding 'resolwe_bio/processes/clustering/find_similar.py'
2025-06-01T13:09:36,659   adding 'resolwe_bio/processes/clustering/hierarchical_clustering.py'
2025-06-01T13:09:36,663   adding 'resolwe_bio/processes/clustering/hierarchical_clustering_etc.py'
2025-06-01T13:09:36,690   adding 'resolwe_bio/processes/clustering/pca.py'
2025-06-01T13:09:36,693   adding 'resolwe_bio/processes/differential_expression/abstract.yml'
2025-06-01T13:09:36,695   adding 'resolwe_bio/processes/differential_expression/cuffdiff.py'
2025-06-01T13:09:36,709   adding 'resolwe_bio/processes/differential_expression/deseq.py'
2025-06-01T13:09:36,712   adding 'resolwe_bio/processes/differential_expression/edgeR.py'
2025-06-01T13:09:36,714   adding 'resolwe_bio/processes/expression/abstract.yml'
2025-06-01T13:09:36,717   adding 'resolwe_bio/processes/expression/cufflinks.yml'
2025-06-01T13:09:36,729   adding 'resolwe_bio/processes/expression/cuffnorm.yml'
2025-06-01T13:09:36,731   adding 'resolwe_bio/processes/expression/cuffquant.yml'
2025-06-01T13:09:36,734   adding 'resolwe_bio/processes/expression/dicty_bcm.yml'
2025-06-01T13:09:36,736   adding 'resolwe_bio/processes/expression/expression_aggregator.py'
2025-06-01T13:09:36,752   adding 'resolwe_bio/processes/expression/featureCounts.py'
2025-06-01T13:09:36,754   adding 'resolwe_bio/processes/expression/mappability.yml'
2025-06-01T13:09:36,761   adding 'resolwe_bio/processes/expression/merge_expressions.yml'
2025-06-01T13:09:36,765   adding 'resolwe_bio/processes/expression/salmon.py'
2025-06-01T13:09:36,767   adding 'resolwe_bio/processes/expression/salmon_index.yml'
2025-06-01T13:09:36,780   adding 'resolwe_bio/processes/expression/star_quantification.py'
2025-06-01T13:09:36,783   adding 'resolwe_bio/processes/fusion_calling/arriba.py'
2025-06-01T13:09:36,786   adding 'resolwe_bio/processes/go_enrichment/go.py'
2025-06-01T13:09:36,800   adding 'resolwe_bio/processes/import_data/abstract_bed.yml'
2025-06-01T13:09:36,802   adding 'resolwe_bio/processes/import_data/annotation.yml'
2025-06-01T13:09:36,804   adding 'resolwe_bio/processes/import_data/annotation_bed.yml'
2025-06-01T13:09:36,806   adding 'resolwe_bio/processes/import_data/annotation_bedpe.py'
2025-06-01T13:09:36,809   adding 'resolwe_bio/processes/import_data/bam.yml'
2025-06-01T13:09:36,819   adding 'resolwe_bio/processes/import_data/basespace.py'
2025-06-01T13:09:36,821   adding 'resolwe_bio/processes/import_data/bwamem2_index_files.py'
2025-06-01T13:09:36,823   adding 'resolwe_bio/processes/import_data/cuffquant.yml'
2025-06-01T13:09:36,825   adding 'resolwe_bio/processes/import_data/differential_exp.yml'
2025-06-01T13:09:36,828   adding 'resolwe_bio/processes/import_data/ensembl_vep_cache.py'
2025-06-01T13:09:36,839   adding 'resolwe_bio/processes/import_data/expressions.py'
2025-06-01T13:09:36,841   adding 'resolwe_bio/processes/import_data/geneset.py'
2025-06-01T13:09:36,844   adding 'resolwe_bio/processes/import_data/go_gaf.yml'
2025-06-01T13:09:36,846   adding 'resolwe_bio/processes/import_data/go_obo.yml'
2025-06-01T13:09:36,848   adding 'resolwe_bio/processes/import_data/mappability_tab.yml'
2025-06-01T13:09:36,859   adding 'resolwe_bio/processes/import_data/metadata.py'
2025-06-01T13:09:36,861   adding 'resolwe_bio/processes/import_data/methylation_array_idat.py'
2025-06-01T13:09:36,864   adding 'resolwe_bio/processes/import_data/ml_ready_expressions.py'
2025-06-01T13:09:36,866   adding 'resolwe_bio/processes/import_data/ml_ready_reference.py'
2025-06-01T13:09:36,879   adding 'resolwe_bio/processes/import_data/nucleotide_seq.py'
2025-06-01T13:09:36,882   adding 'resolwe_bio/processes/import_data/seq_reads.py'
2025-06-01T13:09:36,885   adding 'resolwe_bio/processes/import_data/sra_file.py'
2025-06-01T13:09:36,899   adding 'resolwe_bio/processes/import_data/variants_vcf.yml'
2025-06-01T13:09:36,902   adding 'resolwe_bio/processes/junctions/regtools.yml'
2025-06-01T13:09:36,905   adding 'resolwe_bio/processes/microarray/map_probes.py'
2025-06-01T13:09:36,914   adding 'resolwe_bio/processes/microarray/methylation_arrays.py'
2025-06-01T13:09:36,916   adding 'resolwe_bio/processes/microarray/microarray_expression.py'
2025-06-01T13:09:36,919   adding 'resolwe_bio/processes/plots/bamliquidator.yml'
2025-06-01T13:09:36,929   adding 'resolwe_bio/processes/plots/bamplot.yml'
2025-06-01T13:09:36,932   adding 'resolwe_bio/processes/reads_processing/alignmentsieve.py'
2025-06-01T13:09:36,934   adding 'resolwe_bio/processes/reads_processing/bam_to_fastq.py'
2025-06-01T13:09:36,936   adding 'resolwe_bio/processes/reads_processing/bamclipper.py'
2025-06-01T13:09:36,952   adding 'resolwe_bio/processes/reads_processing/bbduk.py'
2025-06-01T13:09:36,955   adding 'resolwe_bio/processes/reads_processing/bqsr.py'
2025-06-01T13:09:36,964   adding 'resolwe_bio/processes/reads_processing/cutadapt.yml'
2025-06-01T13:09:36,967   adding 'resolwe_bio/processes/reads_processing/cutadapt_3prime.py'
2025-06-01T13:09:36,969   adding 'resolwe_bio/processes/reads_processing/cutadapt_corall.py'
2025-06-01T13:09:36,979   adding 'resolwe_bio/processes/reads_processing/markduplicates.py'
2025-06-01T13:09:36,982   adding 'resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py'
2025-06-01T13:09:36,984   adding 'resolwe_bio/processes/reads_processing/split_ncigar.py'
2025-06-01T13:09:36,987   adding 'resolwe_bio/processes/reads_processing/trimgalore.py'
2025-06-01T13:09:37,000   adding 'resolwe_bio/processes/reads_processing/trimmomatic.yml'
2025-06-01T13:09:37,003   adding 'resolwe_bio/processes/reads_processing/xengsort.py'
2025-06-01T13:09:37,014   adding 'resolwe_bio/processes/samtools/samtools_bedcov.py'
2025-06-01T13:09:37,017   adding 'resolwe_bio/processes/samtools/samtools_coverage.py'
2025-06-01T13:09:37,019   adding 'resolwe_bio/processes/samtools/samtools_depth.py'
2025-06-01T13:09:37,022   adding 'resolwe_bio/processes/samtools/samtools_mpileup.py'
2025-06-01T13:09:37,039   adding 'resolwe_bio/processes/samtools/samtools_view.py'
2025-06-01T13:09:37,042   adding 'resolwe_bio/processes/support_processors/alignment_summary.py'
2025-06-01T13:09:37,044   adding 'resolwe_bio/processes/support_processors/archive.yml'
2025-06-01T13:09:37,047   adding 'resolwe_bio/processes/support_processors/bam_conversion.py'
2025-06-01T13:09:37,058   adding 'resolwe_bio/processes/support_processors/gff_to_gtf.yml'
2025-06-01T13:09:37,061   adding 'resolwe_bio/processes/support_processors/gtf_to_bed.py'
2025-06-01T13:09:37,063   adding 'resolwe_bio/processes/support_processors/insert_size.py'
2025-06-01T13:09:37,066   adding 'resolwe_bio/processes/support_processors/library_strandedness.yml'
2025-06-01T13:09:37,069   adding 'resolwe_bio/processes/support_processors/merge_samples.py'
2025-06-01T13:09:37,081   adding 'resolwe_bio/processes/support_processors/multiqc.py'
2025-06-01T13:09:37,085   adding 'resolwe_bio/processes/support_processors/mutations_table.py'
2025-06-01T13:09:37,099   adding 'resolwe_bio/processes/support_processors/qorts_qc.py'
2025-06-01T13:09:37,102   adding 'resolwe_bio/processes/support_processors/rnaseqc_qc.py'
2025-06-01T13:09:37,104   adding 'resolwe_bio/processes/support_processors/rrbs_metrics.py'
2025-06-01T13:09:37,107   adding 'resolwe_bio/processes/support_processors/samtools_idxstats.py'
2025-06-01T13:09:37,115   adding 'resolwe_bio/processes/support_processors/seqtk.py'
2025-06-01T13:09:37,117   adding 'resolwe_bio/processes/support_processors/spikeins_qc.yml'
2025-06-01T13:09:37,119   adding 'resolwe_bio/processes/support_processors/umi_tools.py'
2025-06-01T13:09:37,129   adding 'resolwe_bio/processes/support_processors/wgs_metrics.py'
2025-06-01T13:09:37,132   adding 'resolwe_bio/processes/unit_tests/test_basic_fields.yml'
2025-06-01T13:09:37,134   adding 'resolwe_bio/processes/unit_tests/test_disabled_fields.yml'
2025-06-01T13:09:37,136   adding 'resolwe_bio/processes/unit_tests/test_hidden_fields.yml'
2025-06-01T13:09:37,148   adding 'resolwe_bio/processes/unit_tests/test_list.yml'
2025-06-01T13:09:37,150   adding 'resolwe_bio/processes/unit_tests/test_sleep_progress.yml'
2025-06-01T13:09:37,154   adding 'resolwe_bio/processes/variant_calling/create_genomicsdb.py'
2025-06-01T13:09:37,156   adding 'resolwe_bio/processes/variant_calling/ensembl_vep.py'
2025-06-01T13:09:37,165   adding 'resolwe_bio/processes/variant_calling/filtering_chemut.py'
2025-06-01T13:09:37,167   adding 'resolwe_bio/processes/variant_calling/gatk4.py'
2025-06-01T13:09:37,169   adding 'resolwe_bio/processes/variant_calling/gatk4_hc.py'
2025-06-01T13:09:37,171   adding 'resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py'
2025-06-01T13:09:37,189   adding 'resolwe_bio/processes/variant_calling/gatk_select_variants.py'
2025-06-01T13:09:37,192   adding 'resolwe_bio/processes/variant_calling/gatk_variant_filtration.py'
2025-06-01T13:09:37,194   adding 'resolwe_bio/processes/variant_calling/gatk_variant_refinement.py'
2025-06-01T13:09:37,209   adding 'resolwe_bio/processes/variant_calling/genotype_gvcfs.py'
2025-06-01T13:09:37,212   adding 'resolwe_bio/processes/variant_calling/snpeff.py'
2025-06-01T13:09:37,214   adding 'resolwe_bio/processes/variant_calling/variants_to_table.py'
2025-06-01T13:09:37,216   adding 'resolwe_bio/processes/variant_calling/vc_chemut.py'
2025-06-01T13:09:37,229   adding 'resolwe_bio/processes/variant_calling/vqsr.py'
2025-06-01T13:09:37,232   adding 'resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py'
2025-06-01T13:09:37,237   adding 'resolwe_bio/processes/workflows/atac_seq.yml'
2025-06-01T13:09:37,250   adding 'resolwe_bio/processes/workflows/bbduk_salmon_qc.py'
2025-06-01T13:09:37,255   adding 'resolwe_bio/processes/workflows/bbduk_star.py'
2025-06-01T13:09:37,267   adding 'resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py'
2025-06-01T13:09:37,270   adding 'resolwe_bio/processes/workflows/chemut.yml'
2025-06-01T13:09:37,274   adding 'resolwe_bio/processes/workflows/chip_seq.yml'
2025-06-01T13:09:37,289   adding 'resolwe_bio/processes/workflows/corall.yml'
2025-06-01T13:09:37,291   adding 'resolwe_bio/processes/workflows/cuffquant.yml'
2025-06-01T13:09:37,295   adding 'resolwe_bio/processes/workflows/cut_and_run.py'
2025-06-01T13:09:37,299   adding 'resolwe_bio/processes/workflows/gene-fusion-calling-arriba.py'
2025-06-01T13:09:37,304   adding 'resolwe_bio/processes/workflows/geo_import.py'
2025-06-01T13:09:37,311   adding 'resolwe_bio/processes/workflows/mirna.yml'
2025-06-01T13:09:37,328   adding 'resolwe_bio/processes/workflows/quantseq.py'
2025-06-01T13:09:37,332   adding 'resolwe_bio/processes/workflows/rnaseq_variant_calling.py'
2025-06-01T13:09:37,349   adding 'resolwe_bio/processes/workflows/wes.yml'
2025-06-01T13:09:37,353   adding 'resolwe_bio/processes/workflows/wgbs.yml'
2025-06-01T13:09:37,360   adding 'resolwe_bio/processes/workflows/wgs.yml'
2025-06-01T13:09:37,363   adding 'resolwe_bio/processes/workflows/wgs_gvcf.py'
2025-06-01T13:09:37,379   adding 'resolwe_bio/tests/__init__.py'
2025-06-01T13:09:37,390   adding 'resolwe_bio/tests/files/00Hr.fastq.gz'
2025-06-01T13:09:37,392   adding 'resolwe_bio/tests/files/20Hr.fastq.gz'
2025-06-01T13:09:37,395   adding 'resolwe_bio/tests/files/3-cuffquant.cxb'
2025-06-01T13:09:37,408   adding 'resolwe_bio/tests/files/3_prime_adapter.fasta.gz'
2025-06-01T13:09:37,411   adding 'resolwe_bio/tests/files/4-cuffquant.cxb'
2025-06-01T13:09:37,415   adding 'resolwe_bio/tests/files/5-cuffquant.cxb'
2025-06-01T13:09:37,417   adding 'resolwe_bio/tests/files/5_prime_adapter.fasta.gz'
2025-06-01T13:09:37,429   adding 'resolwe_bio/tests/files/6-cuffquant.cxb'
2025-06-01T13:09:37,433   adding 'resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R1.fq.gz'
2025-06-01T13:09:37,437   adding 'resolwe_bio/tests/files/GRCh38.p12_NCBIchr21_R2.fq.gz'
2025-06-01T13:09:37,582   adding 'resolwe_bio/tests/files/HS chr21_ensembl.fa.gz'
2025-06-01T13:09:37,592   adding 'resolwe_bio/tests/files/HS chr21_short.gtf.gz'
2025-06-01T13:09:37,594   adding 'resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.fa.gz'
2025-06-01T13:09:37,596   adding 'resolwe_bio/tests/files/Homo_sapiens.GRCh38.92.chr1_20k.gtf.gz'
2025-06-01T13:09:37,606   adding 'resolwe_bio/tests/files/Homo_sapiens_globin_reference.fasta.gz'
2025-06-01T13:09:37,610   adding 'resolwe_bio/tests/files/Homo_sapiens_rRNA.fasta.gz'
2025-06-01T13:09:37,612   adding 'resolwe_bio/tests/files/Hs GRCh38_86 upload.gtf'
2025-06-01T13:09:37,614   adding 'resolwe_bio/tests/files/Hs GRCh38_86 upload_sorted.gtf'
2025-06-01T13:09:37,615   adding 'resolwe_bio/tests/files/PGSC upload.gff3'
2025-06-01T13:09:37,617   adding 'resolwe_bio/tests/files/PGSC upload_sorted.gff3'
2025-06-01T13:09:37,632   adding 'resolwe_bio/tests/files/SRR2124780_1 1k.fastq.gz'
2025-06-01T13:09:37,645   adding 'resolwe_bio/tests/files/SRR2124780_2 1k.fastq.gz'
2025-06-01T13:09:37,652   adding 'resolwe_bio/tests/files/SRR2141558_chr1_20k.fq.gz'
2025-06-01T13:09:37,654   adding 'resolwe_bio/tests/files/SRR2141558_chr1_20k_SJ.bed'
2025-06-01T13:09:37,657   adding 'resolwe_bio/tests/files/Test_S1_L001_R1_001.fastq.gz'
2025-06-01T13:09:37,659   adding 'resolwe_bio/tests/files/Test_S1_L002_R1_001.fastq.gz'
2025-06-01T13:09:37,662   adding 'resolwe_bio/tests/files/adapters.fasta'
2025-06-01T13:09:37,664   adding 'resolwe_bio/tests/files/annotation dicty.gff.gz'
2025-06-01T13:09:37,667   adding 'resolwe_bio/tests/files/annotation dicty.gtf.gz'
2025-06-01T13:09:37,670   adding 'resolwe_bio/tests/files/annotation_rsem.gtf.gz'
2025-06-01T13:09:37,740   adding 'resolwe_bio/tests/files/atac_R1.fastq.gz'
2025-06-01T13:09:37,866   adding 'resolwe_bio/tests/files/atac_R2.fastq.gz'
2025-06-01T13:09:37,892   adding 'resolwe_bio/tests/files/atac_seq_prepeak_report.txt'
2025-06-01T13:09:37,894   adding 'resolwe_bio/tests/files/atac_seq_report.txt'
2025-06-01T13:09:37,896   adding 'resolwe_bio/tests/files/bad.bed'
2025-06-01T13:09:37,898   adding 'resolwe_bio/tests/files/bamplot.bed'
2025-06-01T13:09:37,900   adding 'resolwe_bio/tests/files/bamplot.gff'
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2025-06-01T13:09:44,849   adding 'resolwe_bio/tests/files/wgbs/output/walt_report.txt'
2025-06-01T13:09:44,854   adding 'resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_chr2_17k_paired.hmr.gz'
2025-06-01T13:09:44,857   adding 'resolwe_bio/tests/files/wgbs_workflow/output/paired_end/3A_WT_WGBS_paired_alignment_metrics.txt'
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2025-06-01T13:09:44,883   adding 'resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_alignment_metrics.txt'
2025-06-01T13:09:44,885   adding 'resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_chr2_17k_single.hmr.gz'
2025-06-01T13:09:44,887   adding 'resolwe_bio/tests/files/wgbs_workflow/output/single_end/3A_WT_WGBS_rrbs_summary_metrics.txt'
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2025-06-01T13:09:44,903   adding 'resolwe_bio/tests/files/wgs/input/TP53.bed'
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2025-06-01T13:09:44,959   adding 'resolwe_bio/tests/files/wgs/input/TP53_aligned_reads.bam'
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2025-06-01T13:09:45,565   adding 'resolwe_bio/tests/files/wgs/input/variants.g.vcf.gz.tbi'
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2025-06-01T13:09:45,629   adding 'resolwe_bio/tests/files/wgs/output/wgs_preprocess_bam_stats.txt'
2025-06-01T13:09:45,631   adding 'resolwe_bio/tests/files/wgs/output/wgs_preprocess_markdups_metrics.txt'
2025-06-01T13:09:45,636   adding 'resolwe_bio/tests/files/wgs_workflow/output/tp53_1fastqgz.gatkHC.vcf.gz'
2025-06-01T13:09:45,676   adding 'resolwe_bio/tests/files/workflow_cutnrun/input/GRCh38_chr1_1_1M.fasta.gz'
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2025-06-01T13:09:45,780   adding 'resolwe_bio/tests/files/workflow_cutnrun/output/normalized.bigwig'
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2025-06-01T13:09:45,808   adding 'resolwe_bio/tests/files/xengsort/input/hsa_GRCh38_chr8_127735500-127736500.fasta.gz'
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2025-06-01T13:09:45,832   adding 'resolwe_bio/tests/files/xengsort/output/classification_stats_paired.txt'
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2025-06-01T13:09:45,855   adding 'resolwe_bio/tests/files/xengsort/output/index_stats.txt'
2025-06-01T13:09:45,858   adding 'resolwe_bio/tests/files/xengsort/output/xgensort_index.tar.gz'
2025-06-01T13:09:45,880   adding 'resolwe_bio/tests/processes/__init__.py'
2025-06-01T13:09:45,884   adding 'resolwe_bio/tests/processes/test_alignment.py'
2025-06-01T13:09:45,887   adding 'resolwe_bio/tests/processes/test_annotation.py'
2025-06-01T13:09:45,899   adding 'resolwe_bio/tests/processes/test_arriba.py'
2025-06-01T13:09:45,904   adding 'resolwe_bio/tests/processes/test_chipseq.py'
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2025-06-01T13:09:45,929   adding 'resolwe_bio/tests/processes/test_diff_expression.py'
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2025-06-01T13:09:45,936   adding 'resolwe_bio/tests/processes/test_expression.py'
2025-06-01T13:09:45,939   adding 'resolwe_bio/tests/processes/test_expression_aggregator.py'
2025-06-01T13:09:45,949   adding 'resolwe_bio/tests/processes/test_files_to_reads.py'
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2025-06-01T13:09:45,976   adding 'resolwe_bio/tests/processes/test_ml_ready.py'
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2025-06-01T13:09:45,984   adding 'resolwe_bio/tests/processes/test_plots.py'
2025-06-01T13:09:45,990   adding 'resolwe_bio/tests/processes/test_processor.py'
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2025-06-01T13:09:46,009   adding 'resolwe_bio/tests/processes/test_samtools.py'
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2025-06-01T13:09:46,034   adding 'resolwe_bio/tests/processes/test_variant_calling.py'
2025-06-01T13:09:46,041   adding 'resolwe_bio/tests/processes/test_wgbs.py'
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2025-06-01T13:09:46,060   adding 'resolwe_bio/tests/unit/__init__.py'
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2025-06-01T13:09:46,079   adding 'resolwe_bio/tests/workflows/__init__.py'
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2025-06-01T13:09:46,107   adding 'resolwe_bio/tests/workflows/test_rna_seq.py'
2025-06-01T13:09:46,109   adding 'resolwe_bio/tests/workflows/test_wes.py'
2025-06-01T13:09:46,118   adding 'resolwe_bio/tests/workflows/test_wgbs.py'
2025-06-01T13:09:46,122   adding 'resolwe_bio/tests/workflows/test_wgs.py'
2025-06-01T13:09:46,128   adding 'resolwe_bio/tools/bamliquidator_table.py'
2025-06-01T13:09:46,131   adding 'resolwe_bio/tools/bed_file_corrections_genome_browsers.py'
2025-06-01T13:09:46,149   adding 'resolwe_bio/tools/convert_DE_excel_table.py'
2025-06-01T13:09:46,152   adding 'resolwe_bio/tools/create_gene_sets.py'
2025-06-01T13:09:46,154   adding 'resolwe_bio/tools/cufflinks_sample_groups.py'
2025-06-01T13:09:46,156   adding 'resolwe_bio/tools/cuffnorm_group_labels.py'
2025-06-01T13:09:46,159   adding 'resolwe_bio/tools/cuffnorm_output_table_headers.py'
2025-06-01T13:09:46,165   adding 'resolwe_bio/tools/deseq.R'
2025-06-01T13:09:46,168   adding 'resolwe_bio/tools/detect_strandedness.sh'
2025-06-01T13:09:46,179   adding 'resolwe_bio/tools/expression2storage.py'
2025-06-01T13:09:46,182   adding 'resolwe_bio/tools/expressionmerge.py'
2025-06-01T13:09:46,184   adding 'resolwe_bio/tools/expressionmerge_archive.py'
2025-06-01T13:09:46,187   adding 'resolwe_bio/tools/extract_umi.sh'
2025-06-01T13:09:46,189   adding 'resolwe_bio/tools/fastqc.sh'
2025-06-01T13:09:46,209   adding 'resolwe_bio/tools/gff3_to_gtf.py'
2025-06-01T13:09:46,212   adding 'resolwe_bio/tools/lofreq2_indel_ovlp.py'
2025-06-01T13:09:46,214   adding 'resolwe_bio/tools/make_igv_session_archive.py'
2025-06-01T13:09:46,217   adding 'resolwe_bio/tools/mappability.py'
2025-06-01T13:09:46,220   adding 'resolwe_bio/tools/merge_chipqc_archive.py'
2025-06-01T13:09:46,239   adding 'resolwe_bio/tools/mergebowtie2stats.py'
2025-06-01T13:09:46,242   adding 'resolwe_bio/tools/mergebowtie2stats_paired.py'
2025-06-01T13:09:46,245   adding 'resolwe_bio/tools/mergebowtiestats.py'
2025-06-01T13:09:46,247   adding 'resolwe_bio/tools/novel_splice_junctions.py'
2025-06-01T13:09:46,249   adding 'resolwe_bio/tools/parse_cuffnorm.py'
2025-06-01T13:09:46,252   adding 'resolwe_bio/tools/parse_diffexp.py'
2025-06-01T13:09:46,255   adding 'resolwe_bio/tools/parse_encoding_type.py'
2025-06-01T13:09:46,258   adding 'resolwe_bio/tools/parse_library_type.py'
2025-06-01T13:09:46,261   adding 'resolwe_bio/tools/plot_enhancers.py'
2025-06-01T13:09:46,264   adding 'resolwe_bio/tools/postprocess_snpeff.py'
2025-06-01T13:09:46,267   adding 'resolwe_bio/tools/run_edger.R'
2025-06-01T13:09:46,270   adding 'resolwe_bio/tools/sesame.R'
2025-06-01T13:09:46,274   adding 'resolwe_bio/tools/spikein_pairwise.py'
2025-06-01T13:09:46,277   adding 'resolwe_bio/tools/spikeins_report.py'
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2025-06-01T13:09:46,285   adding 'resolwe_bio/tools/unique_sample_names.py'
2025-06-01T13:09:46,287   adding 'resolwe_bio/tools/utils.py'
2025-06-01T13:09:46,290   adding 'resolwe_bio/tools/validate_fastq.py'
2025-06-01T13:09:46,294   adding 'resolwe_bio/tools/xexpression.py'
2025-06-01T13:09:46,298   adding 'resolwe_bio/utils/__init__.py'
2025-06-01T13:09:46,300   adding 'resolwe_bio/utils/filter.py'
2025-06-01T13:09:46,303   adding 'resolwe_bio/utils/test.py'
2025-06-01T13:09:46,307   adding 'resolwe_bio/variants/__init__.py'
2025-06-01T13:09:46,310   adding 'resolwe_bio/variants/apps.py'
2025-06-01T13:09:46,313   adding 'resolwe_bio/variants/filters.py'
2025-06-01T13:09:46,316   adding 'resolwe_bio/variants/listener_plugin.py'
2025-06-01T13:09:46,319   adding 'resolwe_bio/variants/models.py'
2025-06-01T13:09:46,322   adding 'resolwe_bio/variants/serializers.py'
2025-06-01T13:09:46,324   adding 'resolwe_bio/variants/views.py'
2025-06-01T13:09:46,328   adding 'resolwe_bio/variants/migrations/0001_initial.py'
2025-06-01T13:09:46,331   adding 'resolwe_bio/variants/migrations/0002_rename_unfiltered_allele_depth_variantcall_alternative_allele_depth.py'
2025-06-01T13:09:46,334   adding 'resolwe_bio/variants/migrations/0003_remove_variantannotationtranscript_transcript_ids_and_more.py'
2025-06-01T13:09:46,337   adding 'resolwe_bio/variants/migrations/0004_alter_variantannotation_clinical_diagnosis_and_more.py'
2025-06-01T13:09:46,339   adding 'resolwe_bio/variants/migrations/0005_alter_variantannotation_clinical_diagnosis.py'
2025-06-01T13:09:46,342   adding 'resolwe_bio/variants/migrations/0006_alter_variantannotation_clinvar_id_and_more.py'
2025-06-01T13:09:46,344   adding 'resolwe_bio/variants/migrations/0007_alter_variant_alternative_alter_variant_reference.py'
2025-06-01T13:09:46,346   adding 'resolwe_bio/variants/migrations/0008_alter_variantannotation_clinical_diagnosis_and_more.py'
2025-06-01T13:09:46,349   adding 'resolwe_bio/variants/migrations/0009_alter_variant_alternative_alter_variant_reference.py'
2025-06-01T13:09:46,352   adding 'resolwe_bio/variants/migrations/__init__.py'
2025-06-01T13:09:46,355   adding 'resolwe_bio/variants/tests/__init__.py'
2025-06-01T13:09:46,358   adding 'resolwe_bio/variants/tests/test_process.py'
2025-06-01T13:09:46,365   adding 'resolwe_bio/variants/tests/test_variant.py'
2025-06-01T13:09:46,371   adding 'resolwe_bio-63.1.0.dist-info/LICENSE'
2025-06-01T13:09:46,374   adding 'resolwe_bio-63.1.0.dist-info/METADATA'
2025-06-01T13:09:46,376   adding 'resolwe_bio-63.1.0.dist-info/WHEEL'
2025-06-01T13:09:46,379   adding 'resolwe_bio-63.1.0.dist-info/top_level.txt'
2025-06-01T13:09:46,402   adding 'resolwe_bio-63.1.0.dist-info/RECORD'
2025-06-01T13:09:46,815   removing build/bdist.linux-armv7l/wheel
2025-06-01T13:09:47,655   Building wheel for resolwe-bio (pyproject.toml): finished with status 'done'
2025-06-01T13:09:48,486   Created wheel for resolwe-bio: filename=resolwe_bio-63.1.0-py3-none-any.whl size=22853746 sha256=aebc95a4060c4325387dd88632b2fb184fa87f7b2b58daa802bd0595bd992c36
2025-06-01T13:09:48,488   Stored in directory: /tmp/pip-ephem-wheel-cache-nresztd3/wheels/de/e4/24/4528fba583e633e80cc6a9f3a1a8dba6b11235c9ef1cfeb1cc
2025-06-01T13:09:48,569 Successfully built resolwe-bio
2025-06-01T13:09:49,626 Removed build tracker: '/tmp/pip-build-tracker-k8d6l31t'
2025-06-01T13:09:54,685 Failed to remove a temporary file '/tmp/pip-unpack-bafrsm9_/.nfs000000000020cbe100008643' due to OSError: [Errno 16] Device or resource busy: '.nfs000000000020cbe100008643'.

2025-06-01T13:09:54,686 WARNING: Failed to remove contents in a temporary directory '/tmp/pip-unpack-bafrsm9_'.
2025-06-01T13:09:54,686 You can safely remove it manually.