2025-06-01T18:24:20,433 Created temporary directory: /tmp/pip-build-tracker-54hicaz7 2025-06-01T18:24:20,435 Initialized build tracking at /tmp/pip-build-tracker-54hicaz7 2025-06-01T18:24:20,435 Created build tracker: /tmp/pip-build-tracker-54hicaz7 2025-06-01T18:24:20,435 Entered build tracker: /tmp/pip-build-tracker-54hicaz7 2025-06-01T18:24:20,436 Created temporary directory: /tmp/pip-wheel-aofzg9ue 2025-06-01T18:24:20,440 Created temporary directory: /tmp/pip-ephem-wheel-cache-c7w53ugw 2025-06-01T18:24:20,489 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T18:24:20,491 2 location(s) to search for versions of sigprofilermatrixgenerator: 2025-06-01T18:24:20,491 * https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:20,491 * https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:20,492 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:20,493 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https://files.pythonhosted.org/packages/e0/23/1ed924d3c2cb9a25decfa9b83720b34472b2004136f5c6fa1507318401e5/SigProfilerMatrixGenerator-1.2.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,842 Found link https://files.pythonhosted.org/packages/5e/94/7152ba5b194812bb1c8dc2b3871e20d5b79cb36dd215ad88431f011e84fc/SigProfilerMatrixGenerator-1.2.16.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.16 2025-06-01T18:24:20,842 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/73/77/0ba3d1c0d2d44962dac23b0a89627c0198726407e2f28381c24e797516af/SigProfilerMatrixGenerator-1.2.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,843 Found link https://files.pythonhosted.org/packages/a1/1c/23eada3a0890dc1e50f4cc0c7fb40fd5b41c7711249432fcb8fa86c79005/SigProfilerMatrixGenerator-1.2.17.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.17 2025-06-01T18:24:20,844 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/1a/33/a35f640f9ad72c7e0411fb155d08dd0f973e1bcd065a0ea0d73c74668c7f/SigProfilerMatrixGenerator-1.2.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,844 Found link https://files.pythonhosted.org/packages/3f/29/31789419c026c961b8231e17939bb5cbca732b5825d5ea5a885d51537e2e/SigProfilerMatrixGenerator-1.2.18.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.18 2025-06-01T18:24:20,845 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/02/ed/f1741989f17206b0652034e3f5e0026c579d8271fad749852654e3c6f7b8/SigProfilerMatrixGenerator-1.2.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,846 Found link https://files.pythonhosted.org/packages/44/04/11299859bbba1ec2d6b0391394e02ed21d9e239e0ed7d26d3a40ecb3b09b/SigProfilerMatrixGenerator-1.2.19.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.19 2025-06-01T18:24:20,846 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/f0/4b/dcabca5fc451135a128814c7dc1c79253aaaa8d2546ff63c0578ea13cb4c/SigProfilerMatrixGenerator-1.2.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,847 Found link https://files.pythonhosted.org/packages/0a/fb/ca080b8c78c970bde3282e068402fa427bad7ccac21e9d5a75809b82478a/SigProfilerMatrixGenerator-1.2.20.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.20 2025-06-01T18:24:20,848 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/db/71/6ae2286872761f748db754499a79593179ead23c1817314f353e4b38becb/SigProfilerMatrixGenerator-1.2.21-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,848 Found link https://files.pythonhosted.org/packages/04/e8/f01891a955aa00f8f67b5cd550f41df861dbb92541a71502a56e149acb13/SigProfilerMatrixGenerator-1.2.21.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.21 2025-06-01T18:24:20,849 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/bd/49/0d5b7779835fb45a3dedb51612746c3f3c82ca41f3d209dc66e6ecb9fc91/SigProfilerMatrixGenerator-1.2.22-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,850 Found link https://files.pythonhosted.org/packages/52/5a/98ba066b8a27697468680c78581756cf788e51a3832d19cb0a7a585825f5/SigProfilerMatrixGenerator-1.2.22.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.22 2025-06-01T18:24:20,850 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/b6/5b/930b9864dd897ea475ea1021490792ae4f5d4c333b2ac03b199c22755b25/SigProfilerMatrixGenerator-1.2.23-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,851 Found link https://files.pythonhosted.org/packages/ce/97/6591eb6f95af9fee2edd1d9ffa7d547e03b47ad96411da0310cd6743ab0d/SigProfilerMatrixGenerator-1.2.23.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.23 2025-06-01T18:24:20,852 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/73/09/7dbadcc5413cbfaa7fdd3cf27d6a9b96cf90d3c1629d61a57873c00d3035/SigProfilerMatrixGenerator-1.2.24-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,853 Found link https://files.pythonhosted.org/packages/58/b5/da65fdd2d9a87f232ba95d26ea9a4ea1aca03ef6c0b1b88d095bdd25dc9b/SigProfilerMatrixGenerator-1.2.24.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.24 2025-06-01T18:24:20,853 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ff/65/26059d79cd6c48ad4388e7813eecc56f77e6e8bb3626414c94d552103fc8/SigProfilerMatrixGenerator-1.2.25-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,854 Found link https://files.pythonhosted.org/packages/c1/ba/79e4acefa0262d69538848d6652420f182041b31f66425ba44cefc95e90e/SigProfilerMatrixGenerator-1.2.25.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.25 2025-06-01T18:24:20,854 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/a2/90/9f3fb1cdd7c9cace3cfe645e0635f978e9c7ef938301691943e86f2af573/SigProfilerMatrixGenerator-1.2.26-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,855 Found link https://files.pythonhosted.org/packages/41/60/9933d86ea9e982cd684eff2313cd233fabe06fa9901fa4d16f87c6c9ab92/SigProfilerMatrixGenerator-1.2.26.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.26 2025-06-01T18:24:20,855 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ea/43/791f7741f152dadd488e30846d986c77bfc1cd37ab989f50d963976c4f29/SigProfilerMatrixGenerator-1.2.27-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,856 Found link https://files.pythonhosted.org/packages/17/31/d5ab5957d3267c803970d15aea1bb7363fbe61d20a26d24f393beadf665e/SigProfilerMatrixGenerator-1.2.27.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.27 2025-06-01T18:24:20,857 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/ee/d0/fa1fc000174edd008efd67a489cccafdc3ed624c3d08ebc025073e1e5d0e/SigProfilerMatrixGenerator-1.2.28-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,857 Found link https://files.pythonhosted.org/packages/98/2c/1a80b4b318b0e5dfb758e86907eefc5912e3448fd4cd9f9416a2f406bce5/SigProfilerMatrixGenerator-1.2.28.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.28 2025-06-01T18:24:20,858 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/25/aa/8472dfaea9856f68d34ec4889bf350ca269d7a138fd629767c30c6d586ef/SigProfilerMatrixGenerator-1.2.29-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,859 Found link https://files.pythonhosted.org/packages/ae/b8/c0500b3a18f0eb6f7250216582942ff128576afe5661feaea9bb4fcbc62e/SigProfilerMatrixGenerator-1.2.29.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.29 2025-06-01T18:24:20,859 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/58/49/f2d56087944c562c86f7071b4306d94894a200f0208be956e4d12b4fe5dc/SigProfilerMatrixGenerator-1.2.30-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,860 Found link https://files.pythonhosted.org/packages/9a/87/627452fe76c9a58105fd5644a16aec98d00b837993af85d6d586578d9e5d/SigProfilerMatrixGenerator-1.2.30.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.30 2025-06-01T18:24:20,861 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/9d/91/2f8a0f2691d8e22de5d143cd14166155686904043aa0ea3f0451e38a354d/SigProfilerMatrixGenerator-1.2.31-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8) 2025-06-01T18:24:20,861 Found link https://files.pythonhosted.org/packages/4f/fd/8369d583f0f66a009cda3ab7e4cdedc02379eb687bc278f2953e2e336d69/SigProfilerMatrixGenerator-1.2.31.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.8), version: 1.2.31 2025-06-01T18:24:20,862 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/a1/40/ef6e4103386115fb01b2efd4c5ad793ca32c6bc30f94a997dc8accba9c1a/SigProfilerMatrixGenerator-1.3.0-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,863 Found link https://files.pythonhosted.org/packages/69/82/7c044afbd5817ca79d9a2cb758ec0f1e06bcc39a76925b245ae8af023777/sigprofilermatrixgenerator-1.3.0.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.0 2025-06-01T18:24:20,864 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/b7/e0/9a8be7a7b75a539c7d767df7e56558b00b8888a62df20e1e9dcaf499b04d/SigProfilerMatrixGenerator-1.3.1-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,864 Found link https://files.pythonhosted.org/packages/60/ba/3879400b9e8d4e26429cf8e16ac26f8f883f1624f96485ace63fa5b03638/sigprofilermatrixgenerator-1.3.1.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.1 2025-06-01T18:24:20,865 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/2b/60/db28d75b7f43a1fe5f5ef594f33aa1ce67d78d01ef525bae6138c196b5ad/SigProfilerMatrixGenerator-1.3.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,866 Found link https://files.pythonhosted.org/packages/47/22/57c7612954588a7ec782dd45210998174349784fbf92899bc3c15120dafe/SigProfilerMatrixGenerator-1.3.2.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.2 2025-06-01T18:24:20,866 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/61/fa/ed3656aff58bd84d5790c67654fd956206432bf2b314dda5a2ba95685f8b/SigProfilerMatrixGenerator-1.3.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,867 Found link https://files.pythonhosted.org/packages/7f/58/aa14c094cdcd944c0f9d309100dd62f0ae577a592c68df29f847d0153bf2/SigProfilerMatrixGenerator-1.3.3.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.3 2025-06-01T18:24:20,867 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/9e/17/a399d30ea460f41747bf71e92473dfb739670109904b249e7d50994a4a95/sigprofilermatrixgenerator-1.3.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,868 Found link https://files.pythonhosted.org/packages/ae/02/e3022b605fbaaf445ad1c81f0f899d86bf5457ce9f94734cc04a13bde688/sigprofilermatrixgenerator-1.3.4.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.4 2025-06-01T18:24:20,869 Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://files.pythonhosted.org/packages/03/ec/2d912534d838335f7f8a2c3426be79764c71661a0bccc62fabe36d9c5719/sigprofilermatrixgenerator-1.3.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9) 2025-06-01T18:24:20,870 Found link https://files.pythonhosted.org/packages/df/6f/ea2e6afdea604bce9c007ed0fe51c69f0d921621ce4a28a2a0086d2597ef/sigprofilermatrixgenerator-1.3.5.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/) (requires-python:>=3.9), version: 1.3.5 2025-06-01T18:24:20,870 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:20,871 Getting page https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:20,872 Found index url https://www.piwheels.org/simple/ 2025-06-01T18:24:21,020 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:21,671 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:22,869 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:25,086 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:29,285 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:29,488 Could not fetch URL https://www.piwheels.org/simple/sigprofilermatrixgenerator/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/sigprofilermatrixgenerator/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T18:24:29,489 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:29,490 Skipping link: not a file: https://pypi.org/simple/sigprofilermatrixgenerator/ 2025-06-01T18:24:29,520 Given no hashes to check 1 links for project 'sigprofilermatrixgenerator': discarding no candidates 2025-06-01T18:24:29,522 Collecting sigprofilermatrixgenerator==1.3.3 2025-06-01T18:24:29,524 Created temporary directory: /tmp/pip-unpack-373wyvxe 2025-06-01T18:24:30,043 Downloading SigProfilerMatrixGenerator-1.3.3.tar.gz (46.6 MB) 2025-06-01T18:24:47,969 Added sigprofilermatrixgenerator==1.3.3 from https://files.pythonhosted.org/packages/7f/58/aa14c094cdcd944c0f9d309100dd62f0ae577a592c68df29f847d0153bf2/SigProfilerMatrixGenerator-1.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-54hicaz7' 2025-06-01T18:24:47,971 Running setup.py (path:/tmp/pip-wheel-aofzg9ue/sigprofilermatrixgenerator_196bda50e2de49c782d18ba07419ffcd/setup.py) egg_info for package sigprofilermatrixgenerator 2025-06-01T18:24:47,972 Created temporary directory: /tmp/pip-pip-egg-info-m9coc30a 2025-06-01T18:24:47,973 Preparing metadata (setup.py): started 2025-06-01T18:24:47,974 Running command python setup.py egg_info 2025-06-01T18:24:48,845 running egg_info 2025-06-01T18:24:48,873 creating /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info 2025-06-01T18:24:48,874 writing /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/PKG-INFO 2025-06-01T18:24:48,878 writing dependency_links to /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/dependency_links.txt 2025-06-01T18:24:48,880 writing entry points to /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/entry_points.txt 2025-06-01T18:24:48,882 writing requirements to /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/requires.txt 2025-06-01T18:24:48,883 writing top-level names to /tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/top_level.txt 2025-06-01T18:24:48,884 writing manifest file '/tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-06-01T18:24:48,971 reading manifest file '/tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-06-01T18:24:48,972 reading manifest template 'MANIFEST.in' 2025-06-01T18:24:49,707 adding license file 'LICENSE' 2025-06-01T18:24:49,742 writing manifest file '/tmp/pip-pip-egg-info-m9coc30a/SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-06-01T18:24:49,850 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T18:24:49,854 Source in /tmp/pip-wheel-aofzg9ue/sigprofilermatrixgenerator_196bda50e2de49c782d18ba07419ffcd has version 1.3.3, which satisfies requirement sigprofilermatrixgenerator==1.3.3 from https://files.pythonhosted.org/packages/7f/58/aa14c094cdcd944c0f9d309100dd62f0ae577a592c68df29f847d0153bf2/SigProfilerMatrixGenerator-1.3.3.tar.gz 2025-06-01T18:24:49,855 Removed sigprofilermatrixgenerator==1.3.3 from https://files.pythonhosted.org/packages/7f/58/aa14c094cdcd944c0f9d309100dd62f0ae577a592c68df29f847d0153bf2/SigProfilerMatrixGenerator-1.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-54hicaz7' 2025-06-01T18:24:49,863 Created temporary directory: /tmp/pip-unpack-ictfk72a 2025-06-01T18:24:49,864 Created temporary directory: /tmp/pip-unpack-xpzwmhv7 2025-06-01T18:24:49,865 Building wheels for collected packages: sigprofilermatrixgenerator 2025-06-01T18:24:49,868 Created temporary directory: /tmp/pip-wheel-087qobca 2025-06-01T18:24:49,869 DEPRECATION: Building 'sigprofilermatrixgenerator' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'sigprofilermatrixgenerator'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T18:24:49,871 Building wheel for sigprofilermatrixgenerator (setup.py): started 2025-06-01T18:24:49,872 Destination directory: /tmp/pip-wheel-087qobca 2025-06-01T18:24:49,873 Running command python setup.py bdist_wheel 2025-06-01T18:24:50,723 running bdist_wheel 2025-06-01T18:24:50,853 running build 2025-06-01T18:24:50,854 running build_py 2025-06-01T18:24:50,884 creating build/lib/SigProfilerMatrixGenerator 2025-06-01T18:24:50,886 copying SigProfilerMatrixGenerator/__init__.py -> build/lib/SigProfilerMatrixGenerator 2025-06-01T18:24:50,888 copying SigProfilerMatrixGenerator/version.py -> build/lib/SigProfilerMatrixGenerator 2025-06-01T18:24:50,890 copying SigProfilerMatrixGenerator/install.py -> build/lib/SigProfilerMatrixGenerator 2025-06-01T18:24:50,892 copying SigProfilerMatrixGenerator/test_helpers.py -> build/lib/SigProfilerMatrixGenerator 2025-06-01T18:24:50,894 running egg_info 2025-06-01T18:24:50,922 writing SigProfilerMatrixGenerator.egg-info/PKG-INFO 2025-06-01T18:24:50,927 writing dependency_links to SigProfilerMatrixGenerator.egg-info/dependency_links.txt 2025-06-01T18:24:50,929 writing entry points to SigProfilerMatrixGenerator.egg-info/entry_points.txt 2025-06-01T18:24:50,930 writing requirements to SigProfilerMatrixGenerator.egg-info/requires.txt 2025-06-01T18:24:50,931 writing top-level names to SigProfilerMatrixGenerator.egg-info/top_level.txt 2025-06-01T18:24:50,961 reading manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-06-01T18:24:51,015 reading manifest template 'MANIFEST.in' 2025-06-01T18:24:51,340 adding license file 'LICENSE' 2025-06-01T18:24:51,390 writing manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt' 2025-06-01T18:24:51,393 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.controllers' is absent from the `packages` configuration. 2025-06-01T18:24:51,394 !! 2025-06-01T18:24:51,395 ******************************************************************************** 2025-06-01T18:24:51,395 ############################ 2025-06-01T18:24:51,396 # Package would be ignored # 2025-06-01T18:24:51,396 ############################ 2025-06-01T18:24:51,397 Python recognizes 'SigProfilerMatrixGenerator.controllers' as an importable package[^1], 2025-06-01T18:24:51,397 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,398 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,398 package, please make sure that 'SigProfilerMatrixGenerator.controllers' is explicitly added 2025-06-01T18:24:51,399 to the `packages` configuration field. 2025-06-01T18:24:51,400 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,401 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,403 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,405 If you don't want 'SigProfilerMatrixGenerator.controllers' to be distributed and are 2025-06-01T18:24:51,406 already explicitly excluding 'SigProfilerMatrixGenerator.controllers' via 2025-06-01T18:24:51,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,407 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,408 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,412 even if it does not contain any `.py` files. 2025-06-01T18:24:51,412 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,413 directory, all directories are treated like packages. 2025-06-01T18:24:51,413 ******************************************************************************** 2025-06-01T18:24:51,414 !! 2025-06-01T18:24:51,415 check.warn(importable) 2025-06-01T18:24:51,415 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV' is absent from the `packages` configuration. 2025-06-01T18:24:51,416 !! 2025-06-01T18:24:51,417 ******************************************************************************** 2025-06-01T18:24:51,418 ############################ 2025-06-01T18:24:51,418 # Package would be ignored # 2025-06-01T18:24:51,419 ############################ 2025-06-01T18:24:51,420 Python recognizes 'SigProfilerMatrixGenerator.references.CNV' as an importable package[^1], 2025-06-01T18:24:51,421 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,422 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,422 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV' is explicitly added 2025-06-01T18:24:51,422 to the `packages` configuration field. 2025-06-01T18:24:51,423 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,424 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,425 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,426 If you don't want 'SigProfilerMatrixGenerator.references.CNV' to be distributed and are 2025-06-01T18:24:51,427 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV' via 2025-06-01T18:24:51,427 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,428 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,429 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,433 even if it does not contain any `.py` files. 2025-06-01T18:24:51,433 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,434 directory, all directories are treated like packages. 2025-06-01T18:24:51,435 ******************************************************************************** 2025-06-01T18:24:51,436 !! 2025-06-01T18:24:51,437 check.warn(importable) 2025-06-01T18:24:51,437 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_input' is absent from the `packages` configuration. 2025-06-01T18:24:51,438 !! 2025-06-01T18:24:51,439 ******************************************************************************** 2025-06-01T18:24:51,440 ############################ 2025-06-01T18:24:51,440 # Package would be ignored # 2025-06-01T18:24:51,441 ############################ 2025-06-01T18:24:51,441 Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_input' as an importable package[^1], 2025-06-01T18:24:51,441 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,442 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,443 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_input' is explicitly added 2025-06-01T18:24:51,443 to the `packages` configuration field. 2025-06-01T18:24:51,444 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,445 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,445 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,446 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,448 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,449 If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_input' to be distributed and are 2025-06-01T18:24:51,449 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_input' via 2025-06-01T18:24:51,449 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,450 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,450 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,451 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,453 even if it does not contain any `.py` files. 2025-06-01T18:24:51,453 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,454 directory, all directories are treated like packages. 2025-06-01T18:24:51,454 ******************************************************************************** 2025-06-01T18:24:51,455 !! 2025-06-01T18:24:51,455 check.warn(importable) 2025-06-01T18:24:51,455 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_output' is absent from the `packages` configuration. 2025-06-01T18:24:51,456 !! 2025-06-01T18:24:51,457 ******************************************************************************** 2025-06-01T18:24:51,457 ############################ 2025-06-01T18:24:51,457 # Package would be ignored # 2025-06-01T18:24:51,458 ############################ 2025-06-01T18:24:51,459 Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_output' as an importable package[^1], 2025-06-01T18:24:51,459 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,460 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,461 package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_output' is explicitly added 2025-06-01T18:24:51,461 to the `packages` configuration field. 2025-06-01T18:24:51,463 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,464 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,465 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,466 If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_output' to be distributed and are 2025-06-01T18:24:51,467 already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_output' via 2025-06-01T18:24:51,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,468 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,468 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,469 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,473 even if it does not contain any `.py` files. 2025-06-01T18:24:51,473 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,474 directory, all directories are treated like packages. 2025-06-01T18:24:51,474 ******************************************************************************** 2025-06-01T18:24:51,475 !! 2025-06-01T18:24:51,475 check.warn(importable) 2025-06-01T18:24:51,476 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input' is absent from the `packages` configuration. 2025-06-01T18:24:51,476 !! 2025-06-01T18:24:51,477 ******************************************************************************** 2025-06-01T18:24:51,477 ############################ 2025-06-01T18:24:51,477 # Package would be ignored # 2025-06-01T18:24:51,478 ############################ 2025-06-01T18:24:51,478 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input' as an importable package[^1], 2025-06-01T18:24:51,478 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,479 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,479 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input' is explicitly added 2025-06-01T18:24:51,480 to the `packages` configuration field. 2025-06-01T18:24:51,480 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,481 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,482 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,483 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,484 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input' to be distributed and are 2025-06-01T18:24:51,485 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input' via 2025-06-01T18:24:51,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,487 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,488 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,491 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,491 even if it does not contain any `.py` files. 2025-06-01T18:24:51,492 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,493 directory, all directories are treated like packages. 2025-06-01T18:24:51,493 ******************************************************************************** 2025-06-01T18:24:51,494 !! 2025-06-01T18:24:51,494 check.warn(importable) 2025-06-01T18:24:51,495 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is absent from the `packages` configuration. 2025-06-01T18:24:51,495 !! 2025-06-01T18:24:51,496 ******************************************************************************** 2025-06-01T18:24:51,497 ############################ 2025-06-01T18:24:51,497 # Package would be ignored # 2025-06-01T18:24:51,498 ############################ 2025-06-01T18:24:51,499 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' as an importable package[^1], 2025-06-01T18:24:51,499 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,500 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,501 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is explicitly added 2025-06-01T18:24:51,501 to the `packages` configuration field. 2025-06-01T18:24:51,502 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,502 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,503 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,505 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' to be distributed and are 2025-06-01T18:24:51,505 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' via 2025-06-01T18:24:51,505 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,506 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,507 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,508 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,509 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,509 even if it does not contain any `.py` files. 2025-06-01T18:24:51,510 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,510 directory, all directories are treated like packages. 2025-06-01T18:24:51,511 ******************************************************************************** 2025-06-01T18:24:51,512 !! 2025-06-01T18:24:51,512 check.warn(importable) 2025-06-01T18:24:51,513 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is absent from the `packages` configuration. 2025-06-01T18:24:51,513 !! 2025-06-01T18:24:51,514 ******************************************************************************** 2025-06-01T18:24:51,515 ############################ 2025-06-01T18:24:51,516 # Package would be ignored # 2025-06-01T18:24:51,516 ############################ 2025-06-01T18:24:51,517 Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' as an importable package[^1], 2025-06-01T18:24:51,517 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,518 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,518 package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is explicitly added 2025-06-01T18:24:51,519 to the `packages` configuration field. 2025-06-01T18:24:51,520 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,520 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,522 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,524 If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' to be distributed and are 2025-06-01T18:24:51,524 already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' via 2025-06-01T18:24:51,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,525 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,526 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,528 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,528 even if it does not contain any `.py` files. 2025-06-01T18:24:51,528 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,529 directory, all directories are treated like packages. 2025-06-01T18:24:51,529 ******************************************************************************** 2025-06-01T18:24:51,530 !! 2025-06-01T18:24:51,530 check.warn(importable) 2025-06-01T18:24:51,530 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is absent from the `packages` configuration. 2025-06-01T18:24:51,531 !! 2025-06-01T18:24:51,531 ******************************************************************************** 2025-06-01T18:24:51,532 ############################ 2025-06-01T18:24:51,532 # Package would be ignored # 2025-06-01T18:24:51,533 ############################ 2025-06-01T18:24:51,533 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' as an importable package[^1], 2025-06-01T18:24:51,534 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,535 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,535 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is explicitly added 2025-06-01T18:24:51,536 to the `packages` configuration field. 2025-06-01T18:24:51,537 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,537 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,538 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,539 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,541 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' to be distributed and are 2025-06-01T18:24:51,541 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' via 2025-06-01T18:24:51,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,542 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,543 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,545 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,546 even if it does not contain any `.py` files. 2025-06-01T18:24:51,546 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,547 directory, all directories are treated like packages. 2025-06-01T18:24:51,547 ******************************************************************************** 2025-06-01T18:24:51,548 !! 2025-06-01T18:24:51,549 check.warn(importable) 2025-06-01T18:24:51,549 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome' is absent from the `packages` configuration. 2025-06-01T18:24:51,549 !! 2025-06-01T18:24:51,550 ******************************************************************************** 2025-06-01T18:24:51,550 ############################ 2025-06-01T18:24:51,551 # Package would be ignored # 2025-06-01T18:24:51,551 ############################ 2025-06-01T18:24:51,551 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome' as an importable package[^1], 2025-06-01T18:24:51,552 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,553 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome' is explicitly added 2025-06-01T18:24:51,553 to the `packages` configuration field. 2025-06-01T18:24:51,554 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,555 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,556 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,558 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome' to be distributed and are 2025-06-01T18:24:51,559 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome' via 2025-06-01T18:24:51,559 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,560 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,561 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,562 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,564 even if it does not contain any `.py` files. 2025-06-01T18:24:51,565 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,565 directory, all directories are treated like packages. 2025-06-01T18:24:51,566 ******************************************************************************** 2025-06-01T18:24:51,566 !! 2025-06-01T18:24:51,567 check.warn(importable) 2025-06-01T18:24:51,567 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is absent from the `packages` configuration. 2025-06-01T18:24:51,568 !! 2025-06-01T18:24:51,569 ******************************************************************************** 2025-06-01T18:24:51,569 ############################ 2025-06-01T18:24:51,570 # Package would be ignored # 2025-06-01T18:24:51,570 ############################ 2025-06-01T18:24:51,571 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' as an importable package[^1], 2025-06-01T18:24:51,571 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,572 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,573 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is explicitly added 2025-06-01T18:24:51,574 to the `packages` configuration field. 2025-06-01T18:24:51,574 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,575 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,576 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,577 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' to be distributed and are 2025-06-01T18:24:51,577 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' via 2025-06-01T18:24:51,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,578 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,579 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,580 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,582 even if it does not contain any `.py` files. 2025-06-01T18:24:51,582 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,583 directory, all directories are treated like packages. 2025-06-01T18:24:51,583 ******************************************************************************** 2025-06-01T18:24:51,584 !! 2025-06-01T18:24:51,585 check.warn(importable) 2025-06-01T18:24:51,585 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is absent from the `packages` configuration. 2025-06-01T18:24:51,586 !! 2025-06-01T18:24:51,587 ******************************************************************************** 2025-06-01T18:24:51,587 ############################ 2025-06-01T18:24:51,588 # Package would be ignored # 2025-06-01T18:24:51,588 ############################ 2025-06-01T18:24:51,589 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' as an importable package[^1], 2025-06-01T18:24:51,589 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,590 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,591 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is explicitly added 2025-06-01T18:24:51,591 to the `packages` configuration field. 2025-06-01T18:24:51,592 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,593 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,593 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,594 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,596 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' to be distributed and are 2025-06-01T18:24:51,597 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' via 2025-06-01T18:24:51,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,598 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,600 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,602 even if it does not contain any `.py` files. 2025-06-01T18:24:51,602 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,602 directory, all directories are treated like packages. 2025-06-01T18:24:51,603 ******************************************************************************** 2025-06-01T18:24:51,603 !! 2025-06-01T18:24:51,604 check.warn(importable) 2025-06-01T18:24:51,604 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is absent from the `packages` configuration. 2025-06-01T18:24:51,604 !! 2025-06-01T18:24:51,605 ******************************************************************************** 2025-06-01T18:24:51,606 ############################ 2025-06-01T18:24:51,606 # Package would be ignored # 2025-06-01T18:24:51,606 ############################ 2025-06-01T18:24:51,607 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' as an importable package[^1], 2025-06-01T18:24:51,607 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,608 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,609 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is explicitly added 2025-06-01T18:24:51,609 to the `packages` configuration field. 2025-06-01T18:24:51,610 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,611 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,612 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,615 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' to be distributed and are 2025-06-01T18:24:51,615 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' via 2025-06-01T18:24:51,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,616 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,617 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,620 even if it does not contain any `.py` files. 2025-06-01T18:24:51,621 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,621 directory, all directories are treated like packages. 2025-06-01T18:24:51,622 ******************************************************************************** 2025-06-01T18:24:51,623 !! 2025-06-01T18:24:51,624 check.warn(importable) 2025-06-01T18:24:51,624 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is absent from the `packages` configuration. 2025-06-01T18:24:51,624 !! 2025-06-01T18:24:51,625 ******************************************************************************** 2025-06-01T18:24:51,626 ############################ 2025-06-01T18:24:51,626 # Package would be ignored # 2025-06-01T18:24:51,626 ############################ 2025-06-01T18:24:51,627 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' as an importable package[^1], 2025-06-01T18:24:51,627 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,628 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,628 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is explicitly added 2025-06-01T18:24:51,629 to the `packages` configuration field. 2025-06-01T18:24:51,630 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,631 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,631 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,633 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' to be distributed and are 2025-06-01T18:24:51,634 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' via 2025-06-01T18:24:51,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,635 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,636 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,637 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,639 even if it does not contain any `.py` files. 2025-06-01T18:24:51,640 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,641 directory, all directories are treated like packages. 2025-06-01T18:24:51,641 ******************************************************************************** 2025-06-01T18:24:51,642 !! 2025-06-01T18:24:51,642 check.warn(importable) 2025-06-01T18:24:51,643 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is absent from the `packages` configuration. 2025-06-01T18:24:51,643 !! 2025-06-01T18:24:51,644 ******************************************************************************** 2025-06-01T18:24:51,645 ############################ 2025-06-01T18:24:51,645 # Package would be ignored # 2025-06-01T18:24:51,646 ############################ 2025-06-01T18:24:51,646 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' as an importable package[^1], 2025-06-01T18:24:51,647 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,648 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,648 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is explicitly added 2025-06-01T18:24:51,649 to the `packages` configuration field. 2025-06-01T18:24:51,650 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,651 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,651 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,653 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' to be distributed and are 2025-06-01T18:24:51,653 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' via 2025-06-01T18:24:51,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,654 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,655 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,657 even if it does not contain any `.py` files. 2025-06-01T18:24:51,657 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,658 directory, all directories are treated like packages. 2025-06-01T18:24:51,658 ******************************************************************************** 2025-06-01T18:24:51,659 !! 2025-06-01T18:24:51,660 check.warn(importable) 2025-06-01T18:24:51,660 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is absent from the `packages` configuration. 2025-06-01T18:24:51,661 !! 2025-06-01T18:24:51,662 ******************************************************************************** 2025-06-01T18:24:51,662 ############################ 2025-06-01T18:24:51,663 # Package would be ignored # 2025-06-01T18:24:51,663 ############################ 2025-06-01T18:24:51,664 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' as an importable package[^1], 2025-06-01T18:24:51,664 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,665 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,666 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is explicitly added 2025-06-01T18:24:51,666 to the `packages` configuration field. 2025-06-01T18:24:51,667 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,668 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,669 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,671 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' to be distributed and are 2025-06-01T18:24:51,671 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' via 2025-06-01T18:24:51,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,673 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,673 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,675 even if it does not contain any `.py` files. 2025-06-01T18:24:51,676 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,676 directory, all directories are treated like packages. 2025-06-01T18:24:51,676 ******************************************************************************** 2025-06-01T18:24:51,677 !! 2025-06-01T18:24:51,677 check.warn(importable) 2025-06-01T18:24:51,678 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is absent from the `packages` configuration. 2025-06-01T18:24:51,678 !! 2025-06-01T18:24:51,679 ******************************************************************************** 2025-06-01T18:24:51,679 ############################ 2025-06-01T18:24:51,680 # Package would be ignored # 2025-06-01T18:24:51,680 ############################ 2025-06-01T18:24:51,680 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' as an importable package[^1], 2025-06-01T18:24:51,681 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,682 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,682 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is explicitly added 2025-06-01T18:24:51,683 to the `packages` configuration field. 2025-06-01T18:24:51,684 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,685 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,686 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,688 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' to be distributed and are 2025-06-01T18:24:51,689 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' via 2025-06-01T18:24:51,690 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,690 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,691 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,692 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,693 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,694 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,695 even if it does not contain any `.py` files. 2025-06-01T18:24:51,695 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,696 directory, all directories are treated like packages. 2025-06-01T18:24:51,697 ******************************************************************************** 2025-06-01T18:24:51,698 !! 2025-06-01T18:24:51,698 check.warn(importable) 2025-06-01T18:24:51,699 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is absent from the `packages` configuration. 2025-06-01T18:24:51,699 !! 2025-06-01T18:24:51,700 ******************************************************************************** 2025-06-01T18:24:51,701 ############################ 2025-06-01T18:24:51,701 # Package would be ignored # 2025-06-01T18:24:51,701 ############################ 2025-06-01T18:24:51,702 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' as an importable package[^1], 2025-06-01T18:24:51,702 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,703 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,703 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is explicitly added 2025-06-01T18:24:51,704 to the `packages` configuration field. 2025-06-01T18:24:51,704 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,705 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,706 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,707 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' to be distributed and are 2025-06-01T18:24:51,708 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' via 2025-06-01T18:24:51,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,709 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,710 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,713 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,713 even if it does not contain any `.py` files. 2025-06-01T18:24:51,714 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,714 directory, all directories are treated like packages. 2025-06-01T18:24:51,715 ******************************************************************************** 2025-06-01T18:24:51,716 !! 2025-06-01T18:24:51,716 check.warn(importable) 2025-06-01T18:24:51,717 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is absent from the `packages` configuration. 2025-06-01T18:24:51,717 !! 2025-06-01T18:24:51,718 ******************************************************************************** 2025-06-01T18:24:51,718 ############################ 2025-06-01T18:24:51,719 # Package would be ignored # 2025-06-01T18:24:51,719 ############################ 2025-06-01T18:24:51,720 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' as an importable package[^1], 2025-06-01T18:24:51,720 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,721 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,722 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is explicitly added 2025-06-01T18:24:51,722 to the `packages` configuration field. 2025-06-01T18:24:51,724 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,724 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,724 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,725 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,726 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' to be distributed and are 2025-06-01T18:24:51,727 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' via 2025-06-01T18:24:51,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,728 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,728 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,731 even if it does not contain any `.py` files. 2025-06-01T18:24:51,731 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,731 directory, all directories are treated like packages. 2025-06-01T18:24:51,732 ******************************************************************************** 2025-06-01T18:24:51,733 !! 2025-06-01T18:24:51,733 check.warn(importable) 2025-06-01T18:24:51,734 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is absent from the `packages` configuration. 2025-06-01T18:24:51,734 !! 2025-06-01T18:24:51,735 ******************************************************************************** 2025-06-01T18:24:51,736 ############################ 2025-06-01T18:24:51,736 # Package would be ignored # 2025-06-01T18:24:51,737 ############################ 2025-06-01T18:24:51,737 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' as an importable package[^1], 2025-06-01T18:24:51,738 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,738 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,739 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is explicitly added 2025-06-01T18:24:51,739 to the `packages` configuration field. 2025-06-01T18:24:51,740 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,741 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,741 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,742 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,744 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' to be distributed and are 2025-06-01T18:24:51,744 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' via 2025-06-01T18:24:51,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,746 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,747 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,749 even if it does not contain any `.py` files. 2025-06-01T18:24:51,749 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,749 directory, all directories are treated like packages. 2025-06-01T18:24:51,750 ******************************************************************************** 2025-06-01T18:24:51,750 !! 2025-06-01T18:24:51,751 check.warn(importable) 2025-06-01T18:24:51,751 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is absent from the `packages` configuration. 2025-06-01T18:24:51,751 !! 2025-06-01T18:24:51,752 ******************************************************************************** 2025-06-01T18:24:51,752 ############################ 2025-06-01T18:24:51,753 # Package would be ignored # 2025-06-01T18:24:51,753 ############################ 2025-06-01T18:24:51,754 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' as an importable package[^1], 2025-06-01T18:24:51,754 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,755 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,756 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is explicitly added 2025-06-01T18:24:51,756 to the `packages` configuration field. 2025-06-01T18:24:51,757 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,758 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,759 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,761 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' to be distributed and are 2025-06-01T18:24:51,761 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' via 2025-06-01T18:24:51,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,763 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,764 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,766 even if it does not contain any `.py` files. 2025-06-01T18:24:51,767 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,767 directory, all directories are treated like packages. 2025-06-01T18:24:51,768 ******************************************************************************** 2025-06-01T18:24:51,768 !! 2025-06-01T18:24:51,769 check.warn(importable) 2025-06-01T18:24:51,769 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is absent from the `packages` configuration. 2025-06-01T18:24:51,770 !! 2025-06-01T18:24:51,771 ******************************************************************************** 2025-06-01T18:24:51,771 ############################ 2025-06-01T18:24:51,772 # Package would be ignored # 2025-06-01T18:24:51,772 ############################ 2025-06-01T18:24:51,772 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' as an importable package[^1], 2025-06-01T18:24:51,773 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,773 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,774 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is explicitly added 2025-06-01T18:24:51,774 to the `packages` configuration field. 2025-06-01T18:24:51,775 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,775 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,775 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,776 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,777 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,778 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' to be distributed and are 2025-06-01T18:24:51,778 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' via 2025-06-01T18:24:51,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,779 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,779 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,780 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,783 even if it does not contain any `.py` files. 2025-06-01T18:24:51,783 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,784 directory, all directories are treated like packages. 2025-06-01T18:24:51,784 ******************************************************************************** 2025-06-01T18:24:51,785 !! 2025-06-01T18:24:51,786 check.warn(importable) 2025-06-01T18:24:51,786 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is absent from the `packages` configuration. 2025-06-01T18:24:51,787 !! 2025-06-01T18:24:51,787 ******************************************************************************** 2025-06-01T18:24:51,788 ############################ 2025-06-01T18:24:51,788 # Package would be ignored # 2025-06-01T18:24:51,789 ############################ 2025-06-01T18:24:51,789 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' as an importable package[^1], 2025-06-01T18:24:51,790 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,790 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,791 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is explicitly added 2025-06-01T18:24:51,791 to the `packages` configuration field. 2025-06-01T18:24:51,793 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,793 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,794 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,794 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,796 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' to be distributed and are 2025-06-01T18:24:51,796 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' via 2025-06-01T18:24:51,796 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,797 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,797 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,798 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,800 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,800 even if it does not contain any `.py` files. 2025-06-01T18:24:51,800 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,801 directory, all directories are treated like packages. 2025-06-01T18:24:51,801 ******************************************************************************** 2025-06-01T18:24:51,802 !! 2025-06-01T18:24:51,802 check.warn(importable) 2025-06-01T18:24:51,803 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is absent from the `packages` configuration. 2025-06-01T18:24:51,803 !! 2025-06-01T18:24:51,804 ******************************************************************************** 2025-06-01T18:24:51,804 ############################ 2025-06-01T18:24:51,805 # Package would be ignored # 2025-06-01T18:24:51,805 ############################ 2025-06-01T18:24:51,806 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' as an importable package[^1], 2025-06-01T18:24:51,807 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,807 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,808 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is explicitly added 2025-06-01T18:24:51,808 to the `packages` configuration field. 2025-06-01T18:24:51,809 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,810 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,811 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,812 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,813 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' to be distributed and are 2025-06-01T18:24:51,813 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' via 2025-06-01T18:24:51,814 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,815 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,816 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,818 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,818 even if it does not contain any `.py` files. 2025-06-01T18:24:51,819 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,819 directory, all directories are treated like packages. 2025-06-01T18:24:51,819 ******************************************************************************** 2025-06-01T18:24:51,820 !! 2025-06-01T18:24:51,821 check.warn(importable) 2025-06-01T18:24:51,821 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is absent from the `packages` configuration. 2025-06-01T18:24:51,821 !! 2025-06-01T18:24:51,822 ******************************************************************************** 2025-06-01T18:24:51,823 ############################ 2025-06-01T18:24:51,823 # Package would be ignored # 2025-06-01T18:24:51,824 ############################ 2025-06-01T18:24:51,824 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' as an importable package[^1], 2025-06-01T18:24:51,825 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,825 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,826 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is explicitly added 2025-06-01T18:24:51,826 to the `packages` configuration field. 2025-06-01T18:24:51,827 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,828 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,829 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,830 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' to be distributed and are 2025-06-01T18:24:51,831 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' via 2025-06-01T18:24:51,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,832 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,832 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,833 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,834 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,836 even if it does not contain any `.py` files. 2025-06-01T18:24:51,836 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,837 directory, all directories are treated like packages. 2025-06-01T18:24:51,837 ******************************************************************************** 2025-06-01T18:24:51,838 !! 2025-06-01T18:24:51,838 check.warn(importable) 2025-06-01T18:24:51,839 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is absent from the `packages` configuration. 2025-06-01T18:24:51,839 !! 2025-06-01T18:24:51,840 ******************************************************************************** 2025-06-01T18:24:51,841 ############################ 2025-06-01T18:24:51,841 # Package would be ignored # 2025-06-01T18:24:51,841 ############################ 2025-06-01T18:24:51,842 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' as an importable package[^1], 2025-06-01T18:24:51,842 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,843 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,843 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is explicitly added 2025-06-01T18:24:51,843 to the `packages` configuration field. 2025-06-01T18:24:51,844 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,845 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,846 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,847 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' to be distributed and are 2025-06-01T18:24:51,847 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' via 2025-06-01T18:24:51,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,848 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,849 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,850 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,852 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,852 even if it does not contain any `.py` files. 2025-06-01T18:24:51,853 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,853 directory, all directories are treated like packages. 2025-06-01T18:24:51,854 ******************************************************************************** 2025-06-01T18:24:51,854 !! 2025-06-01T18:24:51,855 check.warn(importable) 2025-06-01T18:24:51,855 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is absent from the `packages` configuration. 2025-06-01T18:24:51,856 !! 2025-06-01T18:24:51,857 ******************************************************************************** 2025-06-01T18:24:51,857 ############################ 2025-06-01T18:24:51,857 # Package would be ignored # 2025-06-01T18:24:51,858 ############################ 2025-06-01T18:24:51,858 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' as an importable package[^1], 2025-06-01T18:24:51,859 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,860 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,860 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is explicitly added 2025-06-01T18:24:51,860 to the `packages` configuration field. 2025-06-01T18:24:51,861 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,862 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,863 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,864 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,864 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' to be distributed and are 2025-06-01T18:24:51,865 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' via 2025-06-01T18:24:51,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,865 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,866 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,866 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,868 even if it does not contain any `.py` files. 2025-06-01T18:24:51,869 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,869 directory, all directories are treated like packages. 2025-06-01T18:24:51,869 ******************************************************************************** 2025-06-01T18:24:51,870 !! 2025-06-01T18:24:51,871 check.warn(importable) 2025-06-01T18:24:51,871 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is absent from the `packages` configuration. 2025-06-01T18:24:51,872 !! 2025-06-01T18:24:51,873 ******************************************************************************** 2025-06-01T18:24:51,873 ############################ 2025-06-01T18:24:51,874 # Package would be ignored # 2025-06-01T18:24:51,874 ############################ 2025-06-01T18:24:51,875 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' as an importable package[^1], 2025-06-01T18:24:51,875 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,876 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,876 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is explicitly added 2025-06-01T18:24:51,877 to the `packages` configuration field. 2025-06-01T18:24:51,878 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,879 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,880 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,881 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,882 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' to be distributed and are 2025-06-01T18:24:51,882 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' via 2025-06-01T18:24:51,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,884 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,885 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,886 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,887 even if it does not contain any `.py` files. 2025-06-01T18:24:51,887 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,888 directory, all directories are treated like packages. 2025-06-01T18:24:51,888 ******************************************************************************** 2025-06-01T18:24:51,889 !! 2025-06-01T18:24:51,889 check.warn(importable) 2025-06-01T18:24:51,890 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is absent from the `packages` configuration. 2025-06-01T18:24:51,890 !! 2025-06-01T18:24:51,891 ******************************************************************************** 2025-06-01T18:24:51,891 ############################ 2025-06-01T18:24:51,892 # Package would be ignored # 2025-06-01T18:24:51,892 ############################ 2025-06-01T18:24:51,893 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' as an importable package[^1], 2025-06-01T18:24:51,893 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,894 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,894 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is explicitly added 2025-06-01T18:24:51,895 to the `packages` configuration field. 2025-06-01T18:24:51,895 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,896 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,897 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,899 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' to be distributed and are 2025-06-01T18:24:51,899 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' via 2025-06-01T18:24:51,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,901 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,902 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,904 even if it does not contain any `.py` files. 2025-06-01T18:24:51,905 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,905 directory, all directories are treated like packages. 2025-06-01T18:24:51,906 ******************************************************************************** 2025-06-01T18:24:51,907 !! 2025-06-01T18:24:51,907 check.warn(importable) 2025-06-01T18:24:51,908 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is absent from the `packages` configuration. 2025-06-01T18:24:51,908 !! 2025-06-01T18:24:51,909 ******************************************************************************** 2025-06-01T18:24:51,909 ############################ 2025-06-01T18:24:51,910 # Package would be ignored # 2025-06-01T18:24:51,910 ############################ 2025-06-01T18:24:51,911 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' as an importable package[^1], 2025-06-01T18:24:51,911 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,912 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,912 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is explicitly added 2025-06-01T18:24:51,912 to the `packages` configuration field. 2025-06-01T18:24:51,913 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,914 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,915 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,916 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' to be distributed and are 2025-06-01T18:24:51,917 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' via 2025-06-01T18:24:51,917 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,918 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,918 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,919 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,920 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,922 even if it does not contain any `.py` files. 2025-06-01T18:24:51,923 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,923 directory, all directories are treated like packages. 2025-06-01T18:24:51,924 ******************************************************************************** 2025-06-01T18:24:51,925 !! 2025-06-01T18:24:51,925 check.warn(importable) 2025-06-01T18:24:51,926 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is absent from the `packages` configuration. 2025-06-01T18:24:51,926 !! 2025-06-01T18:24:51,927 ******************************************************************************** 2025-06-01T18:24:51,927 ############################ 2025-06-01T18:24:51,928 # Package would be ignored # 2025-06-01T18:24:51,928 ############################ 2025-06-01T18:24:51,929 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' as an importable package[^1], 2025-06-01T18:24:51,929 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,930 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,931 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is explicitly added 2025-06-01T18:24:51,931 to the `packages` configuration field. 2025-06-01T18:24:51,933 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,933 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,934 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,935 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,936 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,937 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' to be distributed and are 2025-06-01T18:24:51,937 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' via 2025-06-01T18:24:51,937 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,938 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,939 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,939 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,942 even if it does not contain any `.py` files. 2025-06-01T18:24:51,943 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,943 directory, all directories are treated like packages. 2025-06-01T18:24:51,944 ******************************************************************************** 2025-06-01T18:24:51,945 !! 2025-06-01T18:24:51,945 check.warn(importable) 2025-06-01T18:24:51,945 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is absent from the `packages` configuration. 2025-06-01T18:24:51,946 !! 2025-06-01T18:24:51,947 ******************************************************************************** 2025-06-01T18:24:51,947 ############################ 2025-06-01T18:24:51,948 # Package would be ignored # 2025-06-01T18:24:51,948 ############################ 2025-06-01T18:24:51,949 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' as an importable package[^1], 2025-06-01T18:24:51,949 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,950 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,950 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is explicitly added 2025-06-01T18:24:51,951 to the `packages` configuration field. 2025-06-01T18:24:51,952 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,953 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,954 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,956 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' to be distributed and are 2025-06-01T18:24:51,956 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' via 2025-06-01T18:24:51,957 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,957 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,958 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,959 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,964 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,969 even if it does not contain any `.py` files. 2025-06-01T18:24:51,969 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,970 directory, all directories are treated like packages. 2025-06-01T18:24:51,970 ******************************************************************************** 2025-06-01T18:24:51,971 !! 2025-06-01T18:24:51,972 check.warn(importable) 2025-06-01T18:24:51,972 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is absent from the `packages` configuration. 2025-06-01T18:24:51,973 !! 2025-06-01T18:24:51,975 ******************************************************************************** 2025-06-01T18:24:51,978 ############################ 2025-06-01T18:24:51,978 # Package would be ignored # 2025-06-01T18:24:51,978 ############################ 2025-06-01T18:24:51,979 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' as an importable package[^1], 2025-06-01T18:24:51,979 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:51,980 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:51,981 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is explicitly added 2025-06-01T18:24:51,981 to the `packages` configuration field. 2025-06-01T18:24:51,982 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:51,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:51,983 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:51,984 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:51,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:51,986 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' to be distributed and are 2025-06-01T18:24:51,986 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' via 2025-06-01T18:24:51,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:51,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:51,988 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:51,989 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:51,990 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:51,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:51,992 even if it does not contain any `.py` files. 2025-06-01T18:24:51,992 On the other hand, currently there is no concept of package data 2025-06-01T18:24:51,993 directory, all directories are treated like packages. 2025-06-01T18:24:51,993 ******************************************************************************** 2025-06-01T18:24:51,994 !! 2025-06-01T18:24:51,995 check.warn(importable) 2025-06-01T18:24:51,996 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is absent from the `packages` configuration. 2025-06-01T18:24:51,996 !! 2025-06-01T18:24:51,997 ******************************************************************************** 2025-06-01T18:24:51,997 ############################ 2025-06-01T18:24:51,998 # Package would be ignored # 2025-06-01T18:24:51,999 ############################ 2025-06-01T18:24:51,999 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' as an importable package[^1], 2025-06-01T18:24:52,000 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,000 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,001 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is explicitly added 2025-06-01T18:24:52,001 to the `packages` configuration field. 2025-06-01T18:24:52,002 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,003 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,003 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,005 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' to be distributed and are 2025-06-01T18:24:52,005 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' via 2025-06-01T18:24:52,006 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,006 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,007 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,008 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,010 even if it does not contain any `.py` files. 2025-06-01T18:24:52,011 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,011 directory, all directories are treated like packages. 2025-06-01T18:24:52,012 ******************************************************************************** 2025-06-01T18:24:52,013 !! 2025-06-01T18:24:52,013 check.warn(importable) 2025-06-01T18:24:52,014 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is absent from the `packages` configuration. 2025-06-01T18:24:52,014 !! 2025-06-01T18:24:52,015 ******************************************************************************** 2025-06-01T18:24:52,016 ############################ 2025-06-01T18:24:52,016 # Package would be ignored # 2025-06-01T18:24:52,017 ############################ 2025-06-01T18:24:52,017 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' as an importable package[^1], 2025-06-01T18:24:52,018 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,019 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,019 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is explicitly added 2025-06-01T18:24:52,020 to the `packages` configuration field. 2025-06-01T18:24:52,021 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,022 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,023 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,025 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' to be distributed and are 2025-06-01T18:24:52,025 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' via 2025-06-01T18:24:52,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,027 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,027 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,029 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,030 even if it does not contain any `.py` files. 2025-06-01T18:24:52,030 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,031 directory, all directories are treated like packages. 2025-06-01T18:24:52,031 ******************************************************************************** 2025-06-01T18:24:52,032 !! 2025-06-01T18:24:52,033 check.warn(importable) 2025-06-01T18:24:52,033 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is absent from the `packages` configuration. 2025-06-01T18:24:52,034 !! 2025-06-01T18:24:52,035 ******************************************************************************** 2025-06-01T18:24:52,035 ############################ 2025-06-01T18:24:52,036 # Package would be ignored # 2025-06-01T18:24:52,036 ############################ 2025-06-01T18:24:52,037 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' as an importable package[^1], 2025-06-01T18:24:52,037 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,038 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,039 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is explicitly added 2025-06-01T18:24:52,039 to the `packages` configuration field. 2025-06-01T18:24:52,040 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,041 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,041 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,042 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,044 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,045 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' to be distributed and are 2025-06-01T18:24:52,045 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' via 2025-06-01T18:24:52,046 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,047 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,048 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,051 even if it does not contain any `.py` files. 2025-06-01T18:24:52,051 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,052 directory, all directories are treated like packages. 2025-06-01T18:24:52,052 ******************************************************************************** 2025-06-01T18:24:52,053 !! 2025-06-01T18:24:52,054 check.warn(importable) 2025-06-01T18:24:52,054 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is absent from the `packages` configuration. 2025-06-01T18:24:52,055 !! 2025-06-01T18:24:52,056 ******************************************************************************** 2025-06-01T18:24:52,056 ############################ 2025-06-01T18:24:52,056 # Package would be ignored # 2025-06-01T18:24:52,057 ############################ 2025-06-01T18:24:52,057 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' as an importable package[^1], 2025-06-01T18:24:52,058 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,058 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,059 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is explicitly added 2025-06-01T18:24:52,059 to the `packages` configuration field. 2025-06-01T18:24:52,061 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,061 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,062 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,062 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,064 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,065 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' to be distributed and are 2025-06-01T18:24:52,065 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' via 2025-06-01T18:24:52,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,067 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,068 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,069 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,070 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,071 even if it does not contain any `.py` files. 2025-06-01T18:24:52,071 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,072 directory, all directories are treated like packages. 2025-06-01T18:24:52,072 ******************************************************************************** 2025-06-01T18:24:52,073 !! 2025-06-01T18:24:52,074 check.warn(importable) 2025-06-01T18:24:52,074 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is absent from the `packages` configuration. 2025-06-01T18:24:52,075 !! 2025-06-01T18:24:52,076 ******************************************************************************** 2025-06-01T18:24:52,076 ############################ 2025-06-01T18:24:52,077 # Package would be ignored # 2025-06-01T18:24:52,077 ############################ 2025-06-01T18:24:52,078 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' as an importable package[^1], 2025-06-01T18:24:52,078 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,079 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,079 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is explicitly added 2025-06-01T18:24:52,080 to the `packages` configuration field. 2025-06-01T18:24:52,081 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,081 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,082 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,083 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,084 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' to be distributed and are 2025-06-01T18:24:52,084 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' via 2025-06-01T18:24:52,085 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,085 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,086 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,087 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,089 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,090 even if it does not contain any `.py` files. 2025-06-01T18:24:52,090 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,090 directory, all directories are treated like packages. 2025-06-01T18:24:52,091 ******************************************************************************** 2025-06-01T18:24:52,092 !! 2025-06-01T18:24:52,093 check.warn(importable) 2025-06-01T18:24:52,093 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is absent from the `packages` configuration. 2025-06-01T18:24:52,093 !! 2025-06-01T18:24:52,095 ******************************************************************************** 2025-06-01T18:24:52,095 ############################ 2025-06-01T18:24:52,096 # Package would be ignored # 2025-06-01T18:24:52,096 ############################ 2025-06-01T18:24:52,097 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' as an importable package[^1], 2025-06-01T18:24:52,097 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,098 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,099 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is explicitly added 2025-06-01T18:24:52,099 to the `packages` configuration field. 2025-06-01T18:24:52,100 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,101 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,101 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,103 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,104 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' to be distributed and are 2025-06-01T18:24:52,105 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' via 2025-06-01T18:24:52,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,106 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,107 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,108 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,110 even if it does not contain any `.py` files. 2025-06-01T18:24:52,110 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,111 directory, all directories are treated like packages. 2025-06-01T18:24:52,111 ******************************************************************************** 2025-06-01T18:24:52,112 !! 2025-06-01T18:24:52,112 check.warn(importable) 2025-06-01T18:24:52,113 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is absent from the `packages` configuration. 2025-06-01T18:24:52,113 !! 2025-06-01T18:24:52,114 ******************************************************************************** 2025-06-01T18:24:52,115 ############################ 2025-06-01T18:24:52,115 # Package would be ignored # 2025-06-01T18:24:52,116 ############################ 2025-06-01T18:24:52,116 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' as an importable package[^1], 2025-06-01T18:24:52,117 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,118 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,118 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is explicitly added 2025-06-01T18:24:52,119 to the `packages` configuration field. 2025-06-01T18:24:52,120 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,120 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,121 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,122 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,124 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' to be distributed and are 2025-06-01T18:24:52,124 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' via 2025-06-01T18:24:52,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,126 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,126 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,127 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,128 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,130 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,130 even if it does not contain any `.py` files. 2025-06-01T18:24:52,131 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,131 directory, all directories are treated like packages. 2025-06-01T18:24:52,132 ******************************************************************************** 2025-06-01T18:24:52,133 !! 2025-06-01T18:24:52,133 check.warn(importable) 2025-06-01T18:24:52,134 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is absent from the `packages` configuration. 2025-06-01T18:24:52,134 !! 2025-06-01T18:24:52,135 ******************************************************************************** 2025-06-01T18:24:52,135 ############################ 2025-06-01T18:24:52,136 # Package would be ignored # 2025-06-01T18:24:52,136 ############################ 2025-06-01T18:24:52,137 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' as an importable package[^1], 2025-06-01T18:24:52,137 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,138 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,138 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is explicitly added 2025-06-01T18:24:52,139 to the `packages` configuration field. 2025-06-01T18:24:52,140 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,141 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,142 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,144 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' to be distributed and are 2025-06-01T18:24:52,144 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' via 2025-06-01T18:24:52,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,146 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,146 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,147 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,149 even if it does not contain any `.py` files. 2025-06-01T18:24:52,150 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,150 directory, all directories are treated like packages. 2025-06-01T18:24:52,151 ******************************************************************************** 2025-06-01T18:24:52,152 !! 2025-06-01T18:24:52,152 check.warn(importable) 2025-06-01T18:24:52,153 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is absent from the `packages` configuration. 2025-06-01T18:24:52,153 !! 2025-06-01T18:24:52,154 ******************************************************************************** 2025-06-01T18:24:52,155 ############################ 2025-06-01T18:24:52,155 # Package would be ignored # 2025-06-01T18:24:52,156 ############################ 2025-06-01T18:24:52,156 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' as an importable package[^1], 2025-06-01T18:24:52,157 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,158 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,158 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is explicitly added 2025-06-01T18:24:52,158 to the `packages` configuration field. 2025-06-01T18:24:52,159 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,160 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,160 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,161 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,162 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,163 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' to be distributed and are 2025-06-01T18:24:52,163 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' via 2025-06-01T18:24:52,163 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,164 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,164 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,165 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,166 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,167 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,168 even if it does not contain any `.py` files. 2025-06-01T18:24:52,168 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,169 directory, all directories are treated like packages. 2025-06-01T18:24:52,169 ******************************************************************************** 2025-06-01T18:24:52,170 !! 2025-06-01T18:24:52,171 check.warn(importable) 2025-06-01T18:24:52,171 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is absent from the `packages` configuration. 2025-06-01T18:24:52,172 !! 2025-06-01T18:24:52,173 ******************************************************************************** 2025-06-01T18:24:52,174 ############################ 2025-06-01T18:24:52,174 # Package would be ignored # 2025-06-01T18:24:52,175 ############################ 2025-06-01T18:24:52,175 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' as an importable package[^1], 2025-06-01T18:24:52,175 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,177 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,177 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is explicitly added 2025-06-01T18:24:52,177 to the `packages` configuration field. 2025-06-01T18:24:52,179 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,179 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,180 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,181 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,183 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' to be distributed and are 2025-06-01T18:24:52,183 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' via 2025-06-01T18:24:52,183 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,184 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,184 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,185 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,187 even if it does not contain any `.py` files. 2025-06-01T18:24:52,188 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,188 directory, all directories are treated like packages. 2025-06-01T18:24:52,188 ******************************************************************************** 2025-06-01T18:24:52,189 !! 2025-06-01T18:24:52,190 check.warn(importable) 2025-06-01T18:24:52,190 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is absent from the `packages` configuration. 2025-06-01T18:24:52,191 !! 2025-06-01T18:24:52,192 ******************************************************************************** 2025-06-01T18:24:52,192 ############################ 2025-06-01T18:24:52,193 # Package would be ignored # 2025-06-01T18:24:52,193 ############################ 2025-06-01T18:24:52,194 Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' as an importable package[^1], 2025-06-01T18:24:52,194 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,195 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,196 package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is explicitly added 2025-06-01T18:24:52,196 to the `packages` configuration field. 2025-06-01T18:24:52,197 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,198 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,199 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,201 If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' to be distributed and are 2025-06-01T18:24:52,201 already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' via 2025-06-01T18:24:52,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,203 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,204 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,205 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,207 even if it does not contain any `.py` files. 2025-06-01T18:24:52,207 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,208 directory, all directories are treated like packages. 2025-06-01T18:24:52,209 ******************************************************************************** 2025-06-01T18:24:52,209 !! 2025-06-01T18:24:52,210 check.warn(importable) 2025-06-01T18:24:52,210 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts' is absent from the `packages` configuration. 2025-06-01T18:24:52,210 !! 2025-06-01T18:24:52,211 ******************************************************************************** 2025-06-01T18:24:52,212 ############################ 2025-06-01T18:24:52,212 # Package would be ignored # 2025-06-01T18:24:52,213 ############################ 2025-06-01T18:24:52,213 Python recognizes 'SigProfilerMatrixGenerator.scripts' as an importable package[^1], 2025-06-01T18:24:52,214 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,215 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,215 package, please make sure that 'SigProfilerMatrixGenerator.scripts' is explicitly added 2025-06-01T18:24:52,215 to the `packages` configuration field. 2025-06-01T18:24:52,216 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,217 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,218 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,220 If you don't want 'SigProfilerMatrixGenerator.scripts' to be distributed and are 2025-06-01T18:24:52,220 already explicitly excluding 'SigProfilerMatrixGenerator.scripts' via 2025-06-01T18:24:52,221 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,221 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,222 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,223 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,225 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,226 even if it does not contain any `.py` files. 2025-06-01T18:24:52,226 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,227 directory, all directories are treated like packages. 2025-06-01T18:24:52,227 ******************************************************************************** 2025-06-01T18:24:52,228 !! 2025-06-01T18:24:52,229 check.warn(importable) 2025-06-01T18:24:52,229 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts.Benchmark' is absent from the `packages` configuration. 2025-06-01T18:24:52,230 !! 2025-06-01T18:24:52,231 ******************************************************************************** 2025-06-01T18:24:52,231 ############################ 2025-06-01T18:24:52,232 # Package would be ignored # 2025-06-01T18:24:52,232 ############################ 2025-06-01T18:24:52,233 Python recognizes 'SigProfilerMatrixGenerator.scripts.Benchmark' as an importable package[^1], 2025-06-01T18:24:52,233 but it is absent from setuptools' `packages` configuration. 2025-06-01T18:24:52,234 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-01T18:24:52,235 package, please make sure that 'SigProfilerMatrixGenerator.scripts.Benchmark' is explicitly added 2025-06-01T18:24:52,235 to the `packages` configuration field. 2025-06-01T18:24:52,236 Alternatively, you can also rely on setuptools' discovery methods 2025-06-01T18:24:52,236 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-01T18:24:52,237 instead of `find_packages(...)`/`find:`). 2025-06-01T18:24:52,238 You can read more about "package discovery" on setuptools documentation page: 2025-06-01T18:24:52,239 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-01T18:24:52,239 If you don't want 'SigProfilerMatrixGenerator.scripts.Benchmark' to be distributed and are 2025-06-01T18:24:52,240 already explicitly excluding 'SigProfilerMatrixGenerator.scripts.Benchmark' via 2025-06-01T18:24:52,240 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-01T18:24:52,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-01T18:24:52,241 combination with a more fine grained `package-data` configuration. 2025-06-01T18:24:52,242 You can read more about "package data files" on setuptools documentation page: 2025-06-01T18:24:52,243 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-01T18:24:52,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-01T18:24:52,244 even if it does not contain any `.py` files. 2025-06-01T18:24:52,245 On the other hand, currently there is no concept of package data 2025-06-01T18:24:52,245 directory, all directories are treated like packages. 2025-06-01T18:24:52,246 ******************************************************************************** 2025-06-01T18:24:52,247 !! 2025-06-01T18:24:52,247 check.warn(importable) 2025-06-01T18:24:52,248 creating build/lib/SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:52,248 copying SigProfilerMatrixGenerator/controllers/__init__.py -> build/lib/SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:52,249 copying SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/lib/SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:52,249 creating build/lib/SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:52,250 copying SigProfilerMatrixGenerator/references/CNV/.DS_Store -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:52,250 copying SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:52,251 copying SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/lib/SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:52,251 creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:52,252 copying SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:52,252 copying SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:52,253 creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_output 2025-06-01T18:24:52,254 copying SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_output 2025-06-01T18:24:52,254 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,255 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,255 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,256 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,256 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,257 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,257 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,258 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,258 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,258 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,259 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,259 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,260 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,260 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,261 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,261 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,262 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,262 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,263 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,263 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,264 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,265 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,265 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,266 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,266 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,266 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,267 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,267 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,268 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,268 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,269 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,269 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,270 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,270 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,271 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,271 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,272 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,272 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,273 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,274 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,274 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,274 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,275 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,275 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,276 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,276 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,277 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,277 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,278 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,278 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,279 copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:24:52,279 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,280 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,280 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,280 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,281 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,281 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,282 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,282 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,283 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,283 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,284 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,284 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,285 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,285 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,286 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,286 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,286 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,287 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,287 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,288 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,289 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,290 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,291 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,292 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,292 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,293 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,294 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,294 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,295 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,296 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,296 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,297 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,297 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,298 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,298 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,298 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,299 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,299 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,300 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,301 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,301 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,302 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,303 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,303 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,304 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,304 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,305 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,305 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,306 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,311 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,316 copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:24:52,320 creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,326 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,328 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,328 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,330 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,332 copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:24:52,335 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,336 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,340 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,344 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,346 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,348 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,351 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,354 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,356 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,363 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,369 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,372 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,374 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,377 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,380 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,383 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,385 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,388 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,392 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,396 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,398 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,400 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,403 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,406 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,409 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,416 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,422 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,425 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,428 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,431 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,433 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,436 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,438 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,441 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,447 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,450 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,453 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,455 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,458 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,461 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,464 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,471 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,477 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,479 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,482 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,485 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,487 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,490 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,492 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,495 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,499 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,502 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,505 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,507 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,511 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,514 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,516 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,523 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,534 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,536 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,539 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,542 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,545 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,547 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,550 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,552 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,557 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,561 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,563 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,566 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,569 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,572 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,574 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,583 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,590 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,593 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,595 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,598 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,601 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,603 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,606 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,608 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,612 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,618 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,620 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,623 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,627 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,630 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,633 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,641 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,649 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,651 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,654 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,657 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,661 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,665 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,668 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,671 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,674 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,677 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,679 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,688 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,695 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,698 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,701 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,704 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,706 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,709 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,712 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,714 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,718 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,721 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,723 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,726 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,729 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,734 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,737 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,739 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,742 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,748 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,754 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,763 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,769 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,772 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,774 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,777 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,779 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,782 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,785 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,789 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,792 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,811 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,822 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,855 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,873 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,875 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,877 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,879 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,881 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,884 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,887 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,890 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,893 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,896 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,899 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,902 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,906 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,908 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,912 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,915 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,917 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,920 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,927 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,934 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,941 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,950 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,952 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,955 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,957 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,960 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,964 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,968 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,972 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,976 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:52,992 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,018 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,040 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,057 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,059 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,061 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,063 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,065 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,068 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,071 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,074 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,077 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,080 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,083 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,086 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,088 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,091 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,093 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,095 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,098 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,104 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,110 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,120 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,128 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,131 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,133 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,135 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,138 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,141 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,144 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,148 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,151 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,165 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,184 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,207 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,242 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,244 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,246 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,248 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,251 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,254 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,257 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,259 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,262 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,265 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,267 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,270 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,273 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,275 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,279 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,282 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,287 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,295 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,301 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,307 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,309 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,312 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,314 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,316 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,320 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,323 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,327 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,331 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,356 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,376 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,391 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,407 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,409 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,412 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,415 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,417 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,420 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,423 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,427 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,430 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,433 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,436 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,439 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,442 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,445 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,447 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,450 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,453 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,458 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,463 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,480 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,490 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,493 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,496 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,498 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,501 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,505 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,508 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,513 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,517 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,534 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,544 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,561 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,579 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,581 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,584 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,587 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,589 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,592 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,595 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,598 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,601 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,605 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,607 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,610 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,613 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,616 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,619 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,622 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,624 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,630 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,635 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,642 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,648 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,651 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,653 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,656 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,658 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,662 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,666 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,669 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,673 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,686 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,702 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,717 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,734 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,737 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,740 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,743 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,745 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,748 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,751 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,755 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,758 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,765 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,773 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,781 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,790 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,793 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,796 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,799 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,802 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,807 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,812 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,817 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,822 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,847 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,873 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,890 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,906 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,909 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,911 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,913 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,915 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,918 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,921 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,923 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,926 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,929 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,931 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,934 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,937 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,939 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,942 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,944 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,947 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,950 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,955 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,958 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,961 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,965 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,978 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,980 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,983 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,986 copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:53,989 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-06-01T18:24:53,990 copying SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-06-01T18:24:53,992 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-06-01T18:24:53,994 copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-06-01T18:24:54,344 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-06-01T18:24:54,345 copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-06-01T18:24:54,417 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-06-01T18:24:54,418 copying SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-06-01T18:24:54,886 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-06-01T18:24:54,887 copying SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-06-01T18:24:54,965 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:24:54,966 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:24:54,969 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:24:54,972 copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:24:54,974 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-06-01T18:24:54,975 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-06-01T18:24:55,043 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-06-01T18:24:55,044 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-06-01T18:24:55,140 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-06-01T18:24:55,141 copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-06-01T18:24:55,210 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-06-01T18:24:55,212 copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-06-01T18:24:55,796 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-06-01T18:24:55,796 copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-06-01T18:24:55,925 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-06-01T18:24:55,926 copying SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-06-01T18:24:55,932 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-06-01T18:24:55,933 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-06-01T18:24:55,935 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,936 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,943 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,954 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,964 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,968 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,974 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,980 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,988 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:55,997 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,001 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,011 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,023 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,028 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,034 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,039 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,051 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,062 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,069 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,078 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,087 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,095 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,103 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,110 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,112 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,119 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:24:56,122 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,123 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,131 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,140 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,148 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,152 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,159 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,165 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,175 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,187 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,193 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,205 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,217 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,222 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,226 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,231 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,240 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,250 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,257 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,264 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,273 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,282 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,290 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,297 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,299 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,306 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:24:56,309 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,310 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,317 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,325 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,334 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,342 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,345 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,355 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:24:56,363 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,364 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,368 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,371 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,374 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,377 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,380 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,384 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,387 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,390 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,394 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,397 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,401 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,405 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,408 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,411 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,414 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,417 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,420 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,424 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,427 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,430 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,433 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,436 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,440 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,443 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,446 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,449 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,452 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,455 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,458 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,461 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,464 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,468 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,471 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,475 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,479 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,482 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,486 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,491 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:24:56,496 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-06-01T18:24:56,497 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-06-01T18:24:56,500 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,502 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,509 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,518 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,523 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,529 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,534 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,540 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,545 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,550 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,555 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,563 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,570 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,578 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,586 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,592 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,600 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,607 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,616 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,623 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,631 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,634 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,642 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:24:56,645 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,647 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,661 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,679 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,686 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,692 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,701 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,709 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,715 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,724 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,730 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,739 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,751 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,768 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,779 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,791 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,804 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,815 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,829 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,837 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,847 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,854 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:24:56,857 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,858 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,878 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,890 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,895 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,901 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,908 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,916 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,923 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,931 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,935 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,941 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,948 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,961 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,968 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,979 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,988 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:56,996 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,006 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,014 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,023 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,027 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,034 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:24:57,037 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,038 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,047 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,052 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,057 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,062 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,068 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,073 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,078 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,083 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,088 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,092 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,106 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,111 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,119 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,128 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,135 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,142 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,148 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,155 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,161 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,166 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,170 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,175 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:24:57,177 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,178 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,186 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,191 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,196 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,202 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,207 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,212 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,216 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,221 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,226 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,231 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,246 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,251 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,261 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,269 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,276 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,283 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,289 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,296 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,303 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,309 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,311 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,318 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:24:57,321 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,323 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,326 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,330 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,334 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,337 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,344 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,347 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,350 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,354 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,358 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,361 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,365 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,369 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,373 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,377 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,381 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,385 copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:24:57,388 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-06-01T18:24:57,390 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-06-01T18:24:57,392 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,394 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,398 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,403 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,407 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,410 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,414 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,418 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,422 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,426 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,430 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,435 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,441 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,445 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,448 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,451 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,455 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,459 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,462 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,465 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,469 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,473 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,476 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,479 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,483 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:24:57,485 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,486 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,489 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,493 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,496 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,499 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,502 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,505 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,509 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,513 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,515 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,519 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,523 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,526 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,528 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,532 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,535 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,539 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,542 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,546 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,549 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,553 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,555 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,558 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,562 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:24:57,564 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,565 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,570 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,576 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,582 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,587 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,589 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,597 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:24:57,602 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,603 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,606 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,609 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,612 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,615 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,618 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,621 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,624 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,627 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,631 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,633 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,637 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,640 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,644 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,646 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,649 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,652 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,655 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,658 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,661 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,664 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,667 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,670 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,673 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,676 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,679 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,682 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,684 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,687 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,690 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,693 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,696 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,698 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,701 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,704 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,707 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,710 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,714 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,717 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:24:57,720 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,721 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,725 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,728 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,731 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,735 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,738 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,742 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,745 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,748 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,772 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,776 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,779 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,783 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,813 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,818 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,822 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,826 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,831 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,834 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,838 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,841 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:24:57,844 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,845 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,849 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,852 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,856 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,859 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,862 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,866 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,869 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,873 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,876 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,879 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,883 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,888 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,891 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,895 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,898 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,902 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,905 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,909 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,912 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,916 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:24:57,918 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,919 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,923 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,927 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,930 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,934 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,937 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,941 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,944 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,948 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,951 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,954 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,958 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,962 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,966 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,969 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,973 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,976 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,980 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,983 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,987 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,990 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:24:57,992 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:57,993 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:57,997 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,000 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,003 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,007 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,010 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,013 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,017 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,020 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,023 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,026 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,030 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,034 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,038 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,042 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,046 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,050 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,054 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,057 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,061 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,066 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,068 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,071 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:24:58,073 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,075 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,079 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,082 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,086 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,089 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,093 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,097 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,100 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,103 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,107 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,110 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,116 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,120 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,124 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,129 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,133 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,137 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,141 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,145 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,148 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,151 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,154 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,157 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:24:58,159 creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,160 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,163 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,166 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,169 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,172 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,175 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,178 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,181 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,183 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,186 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,189 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,192 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,195 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,198 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,201 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,204 copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:24:58,207 creating build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,208 copying SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,210 copying SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,215 copying SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,219 copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,223 copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,225 copying SigProfilerMatrixGenerator/scripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,227 copying SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,230 copying SigProfilerMatrixGenerator/scripts/ref_install.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,233 copying SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,236 copying SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,238 copying SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,241 copying SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,244 copying SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,247 copying SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/lib/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,249 creating build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,250 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,255 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,257 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,261 copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,263 copying SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,265 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,270 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,272 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,276 copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,320 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T18:24:58,321 !! 2025-06-01T18:24:58,323 ******************************************************************************** 2025-06-01T18:24:58,323 Please avoid running ``setup.py`` directly. 2025-06-01T18:24:58,324 Instead, use pypa/build, pypa/installer or other 2025-06-01T18:24:58,325 standards-based tools. 2025-06-01T18:24:58,326 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T18:24:58,326 or your builds will no longer be supported. 2025-06-01T18:24:58,328 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T18:24:58,329 ******************************************************************************** 2025-06-01T18:24:58,330 !! 2025-06-01T18:24:58,330 self.initialize_options() 2025-06-01T18:24:58,363 installing to build/bdist.linux-armv7l/wheel 2025-06-01T18:24:58,364 running install 2025-06-01T18:24:58,395 running install_lib 2025-06-01T18:24:58,421 creating build/bdist.linux-armv7l/wheel 2025-06-01T18:24:58,423 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator 2025-06-01T18:24:58,424 copying build/lib/SigProfilerMatrixGenerator/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-06-01T18:24:58,426 copying build/lib/SigProfilerMatrixGenerator/version.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-06-01T18:24:58,428 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:58,429 copying build/lib/SigProfilerMatrixGenerator/controllers/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:58,431 copying build/lib/SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers 2025-06-01T18:24:58,434 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,435 copying build/lib/SigProfilerMatrixGenerator/scripts/ref_install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,437 copying build/lib/SigProfilerMatrixGenerator/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,438 copying build/lib/SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,441 copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,444 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,445 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,447 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,449 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,453 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,455 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,456 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,458 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,462 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,465 copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark 2025-06-01T18:24:58,470 copying build/lib/SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,473 copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,477 copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,480 copying build/lib/SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,487 copying build/lib/SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,490 copying build/lib/SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,494 copying build/lib/SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,497 copying build/lib/SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,500 copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,502 copying build/lib/SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts 2025-06-01T18:24:58,505 copying build/lib/SigProfilerMatrixGenerator/install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-06-01T18:24:58,509 copying build/lib/SigProfilerMatrixGenerator/test_helpers.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator 2025-06-01T18:24:58,512 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references 2025-06-01T18:24:58,513 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:58,515 copying build/lib/SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:58,518 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_output 2025-06-01T18:24:58,519 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_output 2025-06-01T18:24:58,522 copying build/lib/SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:58,524 copying build/lib/SigProfilerMatrixGenerator/references/CNV/.DS_Store -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV 2025-06-01T18:24:58,527 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:58,528 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:58,544 copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input 2025-06-01T18:24:58,553 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes 2025-06-01T18:24:58,560 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,561 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,563 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,565 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,567 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,569 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,571 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,589 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,592 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,594 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,597 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,600 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,602 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,604 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,610 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,612 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,614 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,619 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,624 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,626 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,632 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,634 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,636 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,639 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,641 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,647 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,650 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,653 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,655 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,665 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,667 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,673 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,675 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,689 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,692 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,694 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,701 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,703 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,725 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,727 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,728 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,730 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,737 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,743 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,745 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,747 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,749 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,751 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,753 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,757 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,762 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,790 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,793 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,795 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,797 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,799 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,823 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,826 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,834 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,837 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,839 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,842 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,843 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,845 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,847 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,849 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,851 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,852 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,854 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,857 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,859 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,873 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,888 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,890 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,893 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,895 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,896 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,898 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,902 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,904 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,905 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,907 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,910 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,912 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,914 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,917 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,919 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,921 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,924 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,939 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,941 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,943 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,945 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,947 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,954 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,969 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,994 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:58,998 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,004 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,006 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,008 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,018 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,021 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,023 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,027 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,028 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,031 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,033 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,035 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,037 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,042 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,044 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,054 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,058 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,059 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,066 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,068 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,071 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,076 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,078 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,082 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,084 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,087 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,089 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,112 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,115 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,117 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,122 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,131 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,134 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,137 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,140 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,150 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,153 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,158 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,160 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,163 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,165 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,167 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,170 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,173 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,175 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,178 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,181 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,206 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,208 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,210 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,212 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,214 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,220 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,223 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,238 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,244 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,246 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,248 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,251 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,258 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,263 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,266 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,268 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,270 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,273 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,275 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,277 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,281 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,284 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,287 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,290 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,294 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,296 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,298 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,300 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,302 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,304 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,306 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,311 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,314 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,316 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,318 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,320 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,341 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,346 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,349 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,352 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,371 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,374 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,377 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,380 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,383 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,385 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,388 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,391 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,393 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,396 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,398 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,400 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,403 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,413 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,426 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,429 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,435 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,437 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,456 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,458 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,460 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,463 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,466 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,468 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,471 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,474 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,476 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,478 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,481 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,483 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,502 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,505 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,507 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,513 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,520 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,523 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,525 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,527 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,529 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,531 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,533 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,535 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,538 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,540 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,544 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,546 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,563 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,565 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,567 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,569 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,572 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,574 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,575 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,577 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,580 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,582 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,584 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,601 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,603 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,629 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,632 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,634 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,636 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,640 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,642 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,644 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,646 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,647 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,651 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,654 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,655 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,659 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,689 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,698 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,700 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,709 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,711 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,714 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,767 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,770 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,772 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,774 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,794 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,796 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,798 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,799 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,802 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,808 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,811 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,829 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,845 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,847 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,849 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,855 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,861 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,863 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,866 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,868 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,870 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,872 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,875 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,879 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,881 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,883 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,885 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,887 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,889 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,891 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,893 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,896 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,917 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,920 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,928 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,936 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,938 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,940 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,943 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,945 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,947 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,949 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,952 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,954 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,959 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,961 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,964 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,973 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,976 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,978 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,982 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,995 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:24:59,998 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,000 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,005 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,008 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,010 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,013 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,015 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,017 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,031 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,034 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,037 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,041 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,043 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,046 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,048 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,050 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,059 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,062 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,065 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,069 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,071 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,073 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,076 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,079 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,081 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,085 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,087 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,089 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions 2025-06-01T18:25:00,093 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-06-01T18:25:00,095 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,096 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,104 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,114 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,120 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,126 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,132 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,137 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,144 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,150 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,156 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,161 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,166 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,171 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,174 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,182 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,189 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,194 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,199 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,204 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,212 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,220 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39 2025-06-01T18:25:00,226 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts 2025-06-01T18:25:00,229 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,230 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,232 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,235 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,239 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,242 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,245 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,248 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,251 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,254 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,258 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,261 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,264 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,266 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,269 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,271 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,274 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,278 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,283 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,286 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,289 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,293 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,296 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,298 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,301 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,304 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,306 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,310 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,313 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,316 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,319 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,321 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,324 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,327 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,330 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,333 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,336 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,339 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,342 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,345 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog 2025-06-01T18:25:00,353 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,354 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,365 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,375 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,387 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,393 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,406 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,411 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,421 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,425 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,427 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,432 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,441 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,458 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,462 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,469 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,482 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,485 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,497 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,502 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,508 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,516 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,522 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,532 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,544 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,554 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38 2025-06-01T18:25:00,564 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,565 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,572 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,585 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,594 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,600 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,611 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,615 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,621 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,624 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,626 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,631 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,640 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,648 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,652 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,657 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,666 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,668 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,675 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,679 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,690 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,698 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,708 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,716 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,731 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,745 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37 2025-06-01T18:25:00,755 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,757 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,764 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,776 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,782 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,789 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,794 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,797 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,802 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,804 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,810 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,815 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,820 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,830 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,832 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,838 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,842 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,852 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,856 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,861 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,866 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,870 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,876 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6 2025-06-01T18:25:00,881 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,883 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,886 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,889 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,893 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,896 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,898 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,902 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,905 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,907 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,910 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,912 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,915 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,918 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,920 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,923 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,925 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,928 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast 2025-06-01T18:25:00,930 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,931 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,940 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,950 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,958 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,960 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,967 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,983 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans 2025-06-01T18:25:00,991 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:00,992 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:00,998 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,004 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,009 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,016 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,020 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,024 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,030 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,032 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,041 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,049 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,055 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,062 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,068 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,071 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,084 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,091 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,097 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,104 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,110 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,120 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,132 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10 2025-06-01T18:25:01,141 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-06-01T18:25:01,142 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv 2025-06-01T18:25:01,145 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,146 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,156 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,166 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,173 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,180 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,184 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,189 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,193 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,195 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,201 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,206 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,211 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,215 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,220 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,222 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,231 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,236 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,243 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,247 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,253 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,258 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,265 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,271 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7 2025-06-01T18:25:01,277 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,278 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,285 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,293 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,299 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,306 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,311 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,316 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,325 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,327 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,335 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,342 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,347 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,352 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,356 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,358 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,368 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,377 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,383 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,389 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,395 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,407 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,419 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9 2025-06-01T18:25:01,435 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome 2025-06-01T18:25:01,436 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-06-01T18:25:01,438 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm39 2025-06-01T18:25:01,617 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome 2025-06-01T18:25:01,619 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-06-01T18:25:01,620 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/dog 2025-06-01T18:25:01,765 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-06-01T18:25:01,766 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38 2025-06-01T18:25:01,889 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-06-01T18:25:01,890 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37 2025-06-01T18:25:02,453 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-06-01T18:25:02,454 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn6 2025-06-01T18:25:02,953 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-06-01T18:25:02,954 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/yeast 2025-06-01T18:25:02,960 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-06-01T18:25:02,961 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans 2025-06-01T18:25:03,372 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-06-01T18:25:03,373 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm10 2025-06-01T18:25:03,468 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:25:03,469 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:25:03,471 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:25:03,473 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv 2025-06-01T18:25:03,476 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-06-01T18:25:03,477 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn7 2025-06-01T18:25:03,652 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-06-01T18:25:03,653 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm9 2025-06-01T18:25:03,729 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-06-01T18:25:03,731 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,732 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,735 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,738 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,741 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,743 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,746 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,749 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,752 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,754 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,757 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,760 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,763 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,766 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,770 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,772 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,775 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,778 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,782 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,784 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,787 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,791 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39 2025-06-01T18:25:03,794 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED 2025-06-01T18:25:03,797 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,798 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,800 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,803 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,821 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,825 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,860 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,863 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,887 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,890 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,893 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,896 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,919 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,921 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,923 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,926 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,929 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,941 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,944 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,947 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,949 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,952 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,955 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,958 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,961 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,963 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,966 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,968 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,971 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,973 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,976 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,978 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,981 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,983 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,986 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,989 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,991 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,994 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,996 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:03,999 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog 2025-06-01T18:25:04,002 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,003 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,006 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,009 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,013 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,015 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,018 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,021 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,024 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,027 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,030 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,033 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,035 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,038 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,040 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,043 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,045 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,048 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,050 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,054 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,056 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,059 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,061 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,065 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,068 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38 2025-06-01T18:25:04,072 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,073 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,076 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,078 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,083 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,085 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,089 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,092 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,094 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,097 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,100 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,103 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,105 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,108 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,111 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,114 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,115 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,118 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,121 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,124 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,127 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,129 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,132 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,134 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,137 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37 2025-06-01T18:25:04,141 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,142 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,145 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,148 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,153 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,156 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,158 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,161 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,163 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,167 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,170 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,173 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,175 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,178 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,181 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,185 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,186 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,190 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,192 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,194 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,198 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,201 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,204 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,207 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6 2025-06-01T18:25:04,211 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,212 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,216 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,218 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,221 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,224 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,226 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,229 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,232 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,235 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,237 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,240 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,243 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,245 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,248 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,250 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,252 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast 2025-06-01T18:25:04,255 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,256 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,261 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,266 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,270 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,273 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,275 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,280 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans 2025-06-01T18:25:04,285 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,286 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,289 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,292 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,296 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,299 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,302 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,305 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,309 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,312 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,316 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,319 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,322 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,326 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,330 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,333 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,337 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,340 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,343 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,346 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,349 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,352 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10 2025-06-01T18:25:04,359 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,361 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,364 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,367 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,372 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,376 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,379 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,383 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,386 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,390 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,395 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,399 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,402 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,405 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,410 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,414 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,416 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,422 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,424 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,428 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,434 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,439 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,444 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,448 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7 2025-06-01T18:25:04,454 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,456 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,460 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,465 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,470 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,474 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,479 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,484 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,488 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,492 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,496 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,500 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,504 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,508 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,513 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,515 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,520 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,524 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,528 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,531 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,534 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,537 copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9 2025-06-01T18:25:04,542 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV 2025-06-01T18:25:04,547 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input 2025-06-01T18:25:04,549 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,550 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,552 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,555 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,557 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,590 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF 2025-06-01T18:25:04,598 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,599 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,602 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,603 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,606 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,608 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,609 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,612 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,614 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,617 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,619 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,621 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,623 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,626 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,628 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,630 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,632 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,635 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,636 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,639 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,641 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,643 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,645 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,648 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,650 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,652 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,654 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,656 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,658 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,661 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,663 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,666 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,668 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,670 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,673 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,674 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,676 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,678 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,681 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,683 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,685 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,687 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,688 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,690 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,692 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,695 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,697 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,698 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,700 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,702 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,704 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast 2025-06-01T18:25:04,707 creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,708 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,711 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,713 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,715 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,717 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,720 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,723 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,725 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,727 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,729 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,731 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,735 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,737 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,739 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,741 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,743 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,746 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,747 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,750 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,752 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,754 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,756 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,759 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,761 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,764 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,766 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,768 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,770 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,772 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,774 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,776 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,778 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,780 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,782 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,784 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,786 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,788 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,790 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,792 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,794 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,796 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,797 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,800 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,801 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,803 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,805 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,808 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,810 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,812 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,814 copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG 2025-06-01T18:25:04,816 running install_egg_info 2025-06-01T18:25:04,849 Copying SigProfilerMatrixGenerator.egg-info to build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator-1.3.3-py3.11.egg-info 2025-06-01T18:25:04,865 running install_scripts 2025-06-01T18:25:04,877 creating build/bdist.linux-armv7l/wheel/sigprofilermatrixgenerator-1.3.3.dist-info/WHEEL 2025-06-01T18:25:04,879 creating '/tmp/pip-wheel-087qobca/sigprofilermatrixgenerator-1.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T18:25:04,882 adding 'SigProfilerMatrixGenerator/__init__.py' 2025-06-01T18:25:04,884 adding 'SigProfilerMatrixGenerator/install.py' 2025-06-01T18:25:04,886 adding 'SigProfilerMatrixGenerator/test_helpers.py' 2025-06-01T18:25:04,887 adding 'SigProfilerMatrixGenerator/version.py' 2025-06-01T18:25:04,889 adding 'SigProfilerMatrixGenerator/controllers/__init__.py' 2025-06-01T18:25:04,890 adding 'SigProfilerMatrixGenerator/controllers/cli_controller.py' 2025-06-01T18:25:04,893 adding 'SigProfilerMatrixGenerator/references/CNV/.DS_Store' 2025-06-01T18:25:04,894 adding 'SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv' 2025-06-01T18:25:04,895 adding 'SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt' 2025-06-01T18:25:05,026 adding 'SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv' 2025-06-01T18:25:05,096 adding 'SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv' 2025-06-01T18:25:05,102 adding 'SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv' 2025-06-01T18:25:05,108 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,110 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,111 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,112 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,114 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,115 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,117 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,119 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,121 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,125 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,127 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,129 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,132 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,135 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,136 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,137 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,138 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,140 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,141 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,142 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,145 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,146 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,148 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,150 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,151 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,153 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,158 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,160 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,162 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,164 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,166 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,167 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,170 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,171 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,173 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,177 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,179 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,182 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,185 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,187 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,192 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,194 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,197 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,199 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,201 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,202 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,203 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,204 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,205 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,206 adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe' 2025-06-01T18:25:05,209 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe' 2025-06-01T18:25:05,211 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe' 2025-06-01T18:25:05,212 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe' 2025-06-01T18:25:05,214 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe' 2025-06-01T18:25:05,215 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe' 2025-06-01T18:25:05,216 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe' 2025-06-01T18:25:05,217 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe' 2025-06-01T18:25:05,218 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe' 2025-06-01T18:25:05,219 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe' 2025-06-01T18:25:05,221 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe' 2025-06-01T18:25:05,222 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe' 2025-06-01T18:25:05,225 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe' 2025-06-01T18:25:05,227 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe' 2025-06-01T18:25:05,229 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe' 2025-06-01T18:25:05,232 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe' 2025-06-01T18:25:05,234 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe' 2025-06-01T18:25:05,237 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe' 2025-06-01T18:25:05,239 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe' 2025-06-01T18:25:05,240 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe' 2025-06-01T18:25:05,242 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe' 2025-06-01T18:25:05,244 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe' 2025-06-01T18:25:05,246 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe' 2025-06-01T18:25:05,247 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe' 2025-06-01T18:25:05,249 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe' 2025-06-01T18:25:05,251 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe' 2025-06-01T18:25:05,254 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe' 2025-06-01T18:25:05,258 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe' 2025-06-01T18:25:05,261 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe' 2025-06-01T18:25:05,262 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe' 2025-06-01T18:25:05,264 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe' 2025-06-01T18:25:05,265 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe' 2025-06-01T18:25:05,266 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe' 2025-06-01T18:25:05,267 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe' 2025-06-01T18:25:05,269 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe' 2025-06-01T18:25:05,271 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe' 2025-06-01T18:25:05,273 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe' 2025-06-01T18:25:05,274 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe' 2025-06-01T18:25:05,283 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe' 2025-06-01T18:25:05,285 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe' 2025-06-01T18:25:05,286 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe' 2025-06-01T18:25:05,287 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe' 2025-06-01T18:25:05,289 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe' 2025-06-01T18:25:05,290 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe' 2025-06-01T18:25:05,291 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe' 2025-06-01T18:25:05,292 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe' 2025-06-01T18:25:05,294 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe' 2025-06-01T18:25:05,295 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe' 2025-06-01T18:25:05,298 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe' 2025-06-01T18:25:05,299 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe' 2025-06-01T18:25:05,300 adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe' 2025-06-01T18:25:05,326 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf' 2025-06-01T18:25:05,329 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf' 2025-06-01T18:25:05,520 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf' 2025-06-01T18:25:05,535 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf' 2025-06-01T18:25:05,536 adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf' 2025-06-01T18:25:05,569 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv' 2025-06-01T18:25:05,593 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv' 2025-06-01T18:25:05,594 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv' 2025-06-01T18:25:05,596 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv' 2025-06-01T18:25:05,600 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv' 2025-06-01T18:25:05,604 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv' 2025-06-01T18:25:05,605 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv' 2025-06-01T18:25:05,711 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv' 2025-06-01T18:25:05,812 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv' 2025-06-01T18:25:05,815 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv' 2025-06-01T18:25:05,816 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv' 2025-06-01T18:25:05,818 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv' 2025-06-01T18:25:05,819 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv' 2025-06-01T18:25:05,821 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv' 2025-06-01T18:25:05,822 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv' 2025-06-01T18:25:05,824 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv' 2025-06-01T18:25:05,849 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv' 2025-06-01T18:25:05,872 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv' 2025-06-01T18:25:05,873 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv' 2025-06-01T18:25:05,875 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv' 2025-06-01T18:25:05,879 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv' 2025-06-01T18:25:05,883 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv' 2025-06-01T18:25:05,884 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv' 2025-06-01T18:25:05,990 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv' 2025-06-01T18:25:06,094 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv' 2025-06-01T18:25:06,096 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv' 2025-06-01T18:25:06,098 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv' 2025-06-01T18:25:06,100 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv' 2025-06-01T18:25:06,101 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv' 2025-06-01T18:25:06,102 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv' 2025-06-01T18:25:06,104 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv' 2025-06-01T18:25:06,105 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv' 2025-06-01T18:25:06,128 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv' 2025-06-01T18:25:06,147 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv' 2025-06-01T18:25:06,149 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv' 2025-06-01T18:25:06,150 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv' 2025-06-01T18:25:06,154 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv' 2025-06-01T18:25:06,157 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv' 2025-06-01T18:25:06,158 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv' 2025-06-01T18:25:06,248 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv' 2025-06-01T18:25:06,335 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv' 2025-06-01T18:25:06,340 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv' 2025-06-01T18:25:06,342 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv' 2025-06-01T18:25:06,343 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv' 2025-06-01T18:25:06,345 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv' 2025-06-01T18:25:06,346 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv' 2025-06-01T18:25:06,347 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv' 2025-06-01T18:25:06,349 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv' 2025-06-01T18:25:06,372 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv' 2025-06-01T18:25:06,390 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv' 2025-06-01T18:25:06,392 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv' 2025-06-01T18:25:06,393 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv' 2025-06-01T18:25:06,397 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv' 2025-06-01T18:25:06,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv' 2025-06-01T18:25:06,402 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv' 2025-06-01T18:25:06,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv' 2025-06-01T18:25:06,580 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv' 2025-06-01T18:25:06,583 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv' 2025-06-01T18:25:06,584 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv' 2025-06-01T18:25:06,586 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv' 2025-06-01T18:25:06,587 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv' 2025-06-01T18:25:06,588 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv' 2025-06-01T18:25:06,590 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv' 2025-06-01T18:25:06,591 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv' 2025-06-01T18:25:06,614 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv' 2025-06-01T18:25:06,633 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv' 2025-06-01T18:25:06,634 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv' 2025-06-01T18:25:06,635 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv' 2025-06-01T18:25:06,639 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv' 2025-06-01T18:25:06,642 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv' 2025-06-01T18:25:06,643 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv' 2025-06-01T18:25:06,733 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv' 2025-06-01T18:25:06,821 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv' 2025-06-01T18:25:06,823 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv' 2025-06-01T18:25:06,825 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv' 2025-06-01T18:25:06,826 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv' 2025-06-01T18:25:06,827 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv' 2025-06-01T18:25:06,829 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv' 2025-06-01T18:25:06,830 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv' 2025-06-01T18:25:06,831 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv' 2025-06-01T18:25:06,855 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv' 2025-06-01T18:25:06,875 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv' 2025-06-01T18:25:06,877 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv' 2025-06-01T18:25:06,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv' 2025-06-01T18:25:06,881 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv' 2025-06-01T18:25:06,885 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv' 2025-06-01T18:25:06,886 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv' 2025-06-01T18:25:06,981 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv' 2025-06-01T18:25:07,076 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv' 2025-06-01T18:25:07,079 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv' 2025-06-01T18:25:07,080 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv' 2025-06-01T18:25:07,082 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv' 2025-06-01T18:25:07,107 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv' 2025-06-01T18:25:07,128 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv' 2025-06-01T18:25:07,130 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv' 2025-06-01T18:25:07,131 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv' 2025-06-01T18:25:07,135 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv' 2025-06-01T18:25:07,139 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv' 2025-06-01T18:25:07,140 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv' 2025-06-01T18:25:07,236 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv' 2025-06-01T18:25:07,326 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv' 2025-06-01T18:25:07,328 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv' 2025-06-01T18:25:07,330 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv' 2025-06-01T18:25:07,331 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv' 2025-06-01T18:25:07,333 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv' 2025-06-01T18:25:07,334 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv' 2025-06-01T18:25:07,335 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv' 2025-06-01T18:25:07,337 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv' 2025-06-01T18:25:07,349 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv' 2025-06-01T18:25:07,351 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv' 2025-06-01T18:25:07,352 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv' 2025-06-01T18:25:07,355 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv' 2025-06-01T18:25:07,356 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv' 2025-06-01T18:25:07,418 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv' 2025-06-01T18:25:07,420 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv' 2025-06-01T18:25:07,422 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv' 2025-06-01T18:25:07,423 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv' 2025-06-01T18:25:07,457 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv' 2025-06-01T18:25:07,495 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv' 2025-06-01T18:25:07,561 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv' 2025-06-01T18:25:07,628 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv' 2025-06-01T18:25:07,632 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv' 2025-06-01T18:25:07,633 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv' 2025-06-01T18:25:07,635 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv' 2025-06-01T18:25:07,636 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv' 2025-06-01T18:25:07,644 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv' 2025-06-01T18:25:07,653 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv' 2025-06-01T18:25:07,667 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv' 2025-06-01T18:25:07,683 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv' 2025-06-01T18:25:07,829 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv' 2025-06-01T18:25:07,975 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv' 2025-06-01T18:25:08,244 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv' 2025-06-01T18:25:08,497 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv' 2025-06-01T18:25:08,505 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv' 2025-06-01T18:25:08,506 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv' 2025-06-01T18:25:08,507 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv' 2025-06-01T18:25:08,508 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv' 2025-06-01T18:25:08,510 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv' 2025-06-01T18:25:08,513 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv' 2025-06-01T18:25:08,516 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv' 2025-06-01T18:25:08,519 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv' 2025-06-01T18:25:08,522 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv' 2025-06-01T18:25:08,524 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv' 2025-06-01T18:25:08,526 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv' 2025-06-01T18:25:08,529 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv' 2025-06-01T18:25:08,531 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv' 2025-06-01T18:25:08,533 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv' 2025-06-01T18:25:08,534 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv' 2025-06-01T18:25:08,536 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv' 2025-06-01T18:25:08,538 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv' 2025-06-01T18:25:08,573 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv' 2025-06-01T18:25:08,640 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv' 2025-06-01T18:25:08,704 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv' 2025-06-01T18:25:08,772 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv' 2025-06-01T18:25:08,776 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv' 2025-06-01T18:25:08,777 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv' 2025-06-01T18:25:08,779 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv' 2025-06-01T18:25:08,780 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv' 2025-06-01T18:25:08,788 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv' 2025-06-01T18:25:08,803 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv' 2025-06-01T18:25:08,818 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv' 2025-06-01T18:25:08,827 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv' 2025-06-01T18:25:08,985 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv' 2025-06-01T18:25:09,134 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv' 2025-06-01T18:25:09,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv' 2025-06-01T18:25:09,653 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv' 2025-06-01T18:25:09,661 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv' 2025-06-01T18:25:09,663 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv' 2025-06-01T18:25:09,664 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv' 2025-06-01T18:25:09,666 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv' 2025-06-01T18:25:09,668 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv' 2025-06-01T18:25:09,672 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv' 2025-06-01T18:25:09,675 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv' 2025-06-01T18:25:09,679 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv' 2025-06-01T18:25:09,682 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv' 2025-06-01T18:25:09,684 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv' 2025-06-01T18:25:09,687 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv' 2025-06-01T18:25:09,690 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv' 2025-06-01T18:25:09,692 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv' 2025-06-01T18:25:09,694 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv' 2025-06-01T18:25:09,696 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv' 2025-06-01T18:25:09,698 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv' 2025-06-01T18:25:09,728 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv' 2025-06-01T18:25:09,759 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv' 2025-06-01T18:25:09,815 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv' 2025-06-01T18:25:09,872 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv' 2025-06-01T18:25:09,875 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv' 2025-06-01T18:25:09,877 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv' 2025-06-01T18:25:09,879 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv' 2025-06-01T18:25:09,880 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv' 2025-06-01T18:25:09,887 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv' 2025-06-01T18:25:09,895 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv' 2025-06-01T18:25:09,908 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv' 2025-06-01T18:25:09,915 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv' 2025-06-01T18:25:10,041 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv' 2025-06-01T18:25:10,168 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv' 2025-06-01T18:25:10,399 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv' 2025-06-01T18:25:10,619 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv' 2025-06-01T18:25:10,627 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv' 2025-06-01T18:25:10,628 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv' 2025-06-01T18:25:10,630 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv' 2025-06-01T18:25:10,632 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv' 2025-06-01T18:25:10,634 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv' 2025-06-01T18:25:10,637 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv' 2025-06-01T18:25:10,641 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv' 2025-06-01T18:25:10,643 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv' 2025-06-01T18:25:10,646 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv' 2025-06-01T18:25:10,648 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv' 2025-06-01T18:25:10,651 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv' 2025-06-01T18:25:10,653 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv' 2025-06-01T18:25:10,654 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv' 2025-06-01T18:25:10,656 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv' 2025-06-01T18:25:10,658 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv' 2025-06-01T18:25:10,715 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv' 2025-06-01T18:25:10,773 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv' 2025-06-01T18:25:10,833 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv' 2025-06-01T18:25:10,895 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv' 2025-06-01T18:25:10,898 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv' 2025-06-01T18:25:10,900 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv' 2025-06-01T18:25:10,902 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv' 2025-06-01T18:25:10,904 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv' 2025-06-01T18:25:10,917 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv' 2025-06-01T18:25:10,930 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv' 2025-06-01T18:25:10,944 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv' 2025-06-01T18:25:10,958 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv' 2025-06-01T18:25:11,195 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv' 2025-06-01T18:25:11,421 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv' 2025-06-01T18:25:11,675 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv' 2025-06-01T18:25:11,911 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv' 2025-06-01T18:25:11,918 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv' 2025-06-01T18:25:11,920 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv' 2025-06-01T18:25:11,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv' 2025-06-01T18:25:11,923 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv' 2025-06-01T18:25:11,926 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv' 2025-06-01T18:25:11,930 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv' 2025-06-01T18:25:11,933 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv' 2025-06-01T18:25:11,936 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv' 2025-06-01T18:25:11,939 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv' 2025-06-01T18:25:11,942 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv' 2025-06-01T18:25:11,944 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv' 2025-06-01T18:25:11,947 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv' 2025-06-01T18:25:11,949 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv' 2025-06-01T18:25:11,951 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv' 2025-06-01T18:25:11,953 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv' 2025-06-01T18:25:11,955 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv' 2025-06-01T18:25:11,985 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv' 2025-06-01T18:25:12,016 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv' 2025-06-01T18:25:12,073 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv' 2025-06-01T18:25:12,131 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv' 2025-06-01T18:25:12,134 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv' 2025-06-01T18:25:12,136 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv' 2025-06-01T18:25:12,138 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv' 2025-06-01T18:25:12,140 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv' 2025-06-01T18:25:12,147 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv' 2025-06-01T18:25:12,154 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv' 2025-06-01T18:25:12,167 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv' 2025-06-01T18:25:12,175 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv' 2025-06-01T18:25:12,301 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv' 2025-06-01T18:25:12,429 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv' 2025-06-01T18:25:12,660 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv' 2025-06-01T18:25:12,882 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv' 2025-06-01T18:25:12,889 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv' 2025-06-01T18:25:12,891 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv' 2025-06-01T18:25:12,893 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv' 2025-06-01T18:25:12,894 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv' 2025-06-01T18:25:12,897 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv' 2025-06-01T18:25:12,899 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv' 2025-06-01T18:25:12,903 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv' 2025-06-01T18:25:12,906 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv' 2025-06-01T18:25:12,908 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv' 2025-06-01T18:25:12,911 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv' 2025-06-01T18:25:12,914 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv' 2025-06-01T18:25:12,917 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv' 2025-06-01T18:25:12,918 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv' 2025-06-01T18:25:12,920 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv' 2025-06-01T18:25:12,922 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv' 2025-06-01T18:25:12,924 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv' 2025-06-01T18:25:12,956 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv' 2025-06-01T18:25:12,989 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv' 2025-06-01T18:25:13,023 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv' 2025-06-01T18:25:13,058 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv' 2025-06-01T18:25:13,060 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv' 2025-06-01T18:25:13,062 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv' 2025-06-01T18:25:13,064 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv' 2025-06-01T18:25:13,066 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv' 2025-06-01T18:25:13,073 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv' 2025-06-01T18:25:13,081 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv' 2025-06-01T18:25:13,089 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv' 2025-06-01T18:25:13,097 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv' 2025-06-01T18:25:13,228 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv' 2025-06-01T18:25:13,367 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv' 2025-06-01T18:25:13,507 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv' 2025-06-01T18:25:13,652 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv' 2025-06-01T18:25:13,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv' 2025-06-01T18:25:13,659 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv' 2025-06-01T18:25:13,660 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv' 2025-06-01T18:25:13,662 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv' 2025-06-01T18:25:13,664 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv' 2025-06-01T18:25:13,667 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv' 2025-06-01T18:25:13,670 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv' 2025-06-01T18:25:13,672 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv' 2025-06-01T18:25:13,733 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv' 2025-06-01T18:25:13,795 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv' 2025-06-01T18:25:13,860 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv' 2025-06-01T18:25:13,925 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv' 2025-06-01T18:25:13,928 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv' 2025-06-01T18:25:13,930 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv' 2025-06-01T18:25:13,932 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv' 2025-06-01T18:25:13,934 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv' 2025-06-01T18:25:13,948 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv' 2025-06-01T18:25:13,962 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv' 2025-06-01T18:25:13,977 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv' 2025-06-01T18:25:13,992 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv' 2025-06-01T18:25:14,241 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv' 2025-06-01T18:25:14,479 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv' 2025-06-01T18:25:14,748 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv' 2025-06-01T18:25:14,992 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv' 2025-06-01T18:25:15,000 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv' 2025-06-01T18:25:15,002 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv' 2025-06-01T18:25:15,003 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv' 2025-06-01T18:25:15,005 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv' 2025-06-01T18:25:15,008 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv' 2025-06-01T18:25:15,011 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv' 2025-06-01T18:25:15,015 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv' 2025-06-01T18:25:15,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv' 2025-06-01T18:25:15,021 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv' 2025-06-01T18:25:15,024 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv' 2025-06-01T18:25:15,026 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv' 2025-06-01T18:25:15,029 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv' 2025-06-01T18:25:15,031 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv' 2025-06-01T18:25:15,033 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv' 2025-06-01T18:25:15,035 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv' 2025-06-01T18:25:15,037 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv' 2025-06-01T18:25:15,045 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt' 2025-06-01T18:25:15,091 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv' 2025-06-01T18:25:15,099 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv' 2025-06-01T18:25:15,101 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv' 2025-06-01T18:25:15,111 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv' 2025-06-01T18:25:15,280 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv' 2025-06-01T18:25:15,286 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv' 2025-06-01T18:25:15,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv' 2025-06-01T18:25:15,291 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv' 2025-06-01T18:25:15,293 adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv' 2025-06-01T18:25:15,295 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py' 2025-06-01T18:25:18,109 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list' 2025-06-01T18:25:19,183 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list' 2025-06-01T18:25:20,495 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list' 2025-06-01T18:25:21,401 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list' 2025-06-01T18:25:21,431 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list' 2025-06-01T18:25:21,433 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt' 2025-06-01T18:25:21,436 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv' 2025-06-01T18:25:22,324 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list' 2025-06-01T18:25:23,240 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list' 2025-06-01T18:25:24,156 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list' 2025-06-01T18:25:26,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list' 2025-06-01T18:25:27,709 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list' 2025-06-01T18:25:27,803 adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list' 2025-06-01T18:25:27,806 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py' 2025-06-01T18:25:27,828 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt' 2025-06-01T18:25:27,872 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt' 2025-06-01T18:25:27,915 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt' 2025-06-01T18:25:27,927 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt' 2025-06-01T18:25:27,951 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt' 2025-06-01T18:25:27,973 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt' 2025-06-01T18:25:28,005 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt' 2025-06-01T18:25:28,049 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt' 2025-06-01T18:25:28,063 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt' 2025-06-01T18:25:28,114 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt' 2025-06-01T18:25:28,177 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt' 2025-06-01T18:25:28,195 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt' 2025-06-01T18:25:28,203 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt' 2025-06-01T18:25:28,218 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt' 2025-06-01T18:25:28,265 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt' 2025-06-01T18:25:28,306 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt' 2025-06-01T18:25:28,333 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt' 2025-06-01T18:25:28,363 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt' 2025-06-01T18:25:28,395 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt' 2025-06-01T18:25:28,427 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt' 2025-06-01T18:25:28,453 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt' 2025-06-01T18:25:28,476 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt' 2025-06-01T18:25:28,479 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt' 2025-06-01T18:25:28,501 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt' 2025-06-01T18:25:28,505 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt' 2025-06-01T18:25:28,527 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt' 2025-06-01T18:25:28,572 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt' 2025-06-01T18:25:28,615 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt' 2025-06-01T18:25:28,627 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt' 2025-06-01T18:25:28,651 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt' 2025-06-01T18:25:28,674 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt' 2025-06-01T18:25:28,706 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt' 2025-06-01T18:25:28,749 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt' 2025-06-01T18:25:28,763 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt' 2025-06-01T18:25:28,815 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt' 2025-06-01T18:25:28,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt' 2025-06-01T18:25:28,897 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt' 2025-06-01T18:25:28,904 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt' 2025-06-01T18:25:28,919 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt' 2025-06-01T18:25:28,965 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt' 2025-06-01T18:25:29,008 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt' 2025-06-01T18:25:29,036 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt' 2025-06-01T18:25:29,067 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt' 2025-06-01T18:25:29,099 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt' 2025-06-01T18:25:29,131 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt' 2025-06-01T18:25:29,158 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt' 2025-06-01T18:25:29,181 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt' 2025-06-01T18:25:29,184 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt' 2025-06-01T18:25:29,207 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt' 2025-06-01T18:25:29,211 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt' 2025-06-01T18:25:29,245 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt' 2025-06-01T18:25:29,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt' 2025-06-01T18:25:29,336 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt' 2025-06-01T18:25:29,375 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt' 2025-06-01T18:25:29,379 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt' 2025-06-01T18:25:29,437 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt' 2025-06-01T18:25:29,475 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt' 2025-06-01T18:25:29,485 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt' 2025-06-01T18:25:29,492 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt' 2025-06-01T18:25:29,498 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt' 2025-06-01T18:25:29,503 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt' 2025-06-01T18:25:29,507 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt' 2025-06-01T18:25:29,513 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt' 2025-06-01T18:25:29,519 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt' 2025-06-01T18:25:29,526 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt' 2025-06-01T18:25:29,534 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt' 2025-06-01T18:25:29,537 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt' 2025-06-01T18:25:29,551 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt' 2025-06-01T18:25:29,562 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt' 2025-06-01T18:25:29,568 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt' 2025-06-01T18:25:29,571 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt' 2025-06-01T18:25:29,575 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt' 2025-06-01T18:25:29,582 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt' 2025-06-01T18:25:29,586 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt' 2025-06-01T18:25:29,592 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt' 2025-06-01T18:25:29,599 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt' 2025-06-01T18:25:29,604 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt' 2025-06-01T18:25:29,607 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt' 2025-06-01T18:25:29,616 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt' 2025-06-01T18:25:29,621 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt' 2025-06-01T18:25:29,624 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt' 2025-06-01T18:25:29,627 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt' 2025-06-01T18:25:29,630 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt' 2025-06-01T18:25:29,634 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt' 2025-06-01T18:25:29,637 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt' 2025-06-01T18:25:29,639 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt' 2025-06-01T18:25:29,643 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt' 2025-06-01T18:25:29,645 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt' 2025-06-01T18:25:29,651 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt' 2025-06-01T18:25:29,658 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt' 2025-06-01T18:25:29,669 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt' 2025-06-01T18:25:29,679 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt' 2025-06-01T18:25:29,688 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt' 2025-06-01T18:25:29,695 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt' 2025-06-01T18:25:29,707 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt' 2025-06-01T18:25:29,717 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt' 2025-06-01T18:25:29,720 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt' 2025-06-01T18:25:29,744 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt' 2025-06-01T18:25:29,779 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt' 2025-06-01T18:25:29,796 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt' 2025-06-01T18:25:29,815 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt' 2025-06-01T18:25:29,835 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt' 2025-06-01T18:25:29,854 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt' 2025-06-01T18:25:29,870 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt' 2025-06-01T18:25:29,897 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt' 2025-06-01T18:25:29,907 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt' 2025-06-01T18:25:29,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt' 2025-06-01T18:25:29,950 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt' 2025-06-01T18:25:29,992 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt' 2025-06-01T18:25:30,018 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt' 2025-06-01T18:25:30,048 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt' 2025-06-01T18:25:30,079 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt' 2025-06-01T18:25:30,107 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt' 2025-06-01T18:25:30,155 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt' 2025-06-01T18:25:30,181 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt' 2025-06-01T18:25:30,211 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt' 2025-06-01T18:25:30,214 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt' 2025-06-01T18:25:30,232 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt' 2025-06-01T18:25:30,236 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt' 2025-06-01T18:25:30,259 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt' 2025-06-01T18:25:30,295 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt' 2025-06-01T18:25:30,311 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt' 2025-06-01T18:25:30,330 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt' 2025-06-01T18:25:30,348 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt' 2025-06-01T18:25:30,367 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt' 2025-06-01T18:25:30,383 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt' 2025-06-01T18:25:30,408 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt' 2025-06-01T18:25:30,421 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt' 2025-06-01T18:25:30,437 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt' 2025-06-01T18:25:30,466 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt' 2025-06-01T18:25:30,509 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt' 2025-06-01T18:25:30,534 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt' 2025-06-01T18:25:30,564 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt' 2025-06-01T18:25:30,596 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt' 2025-06-01T18:25:30,624 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt' 2025-06-01T18:25:30,673 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt' 2025-06-01T18:25:30,698 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt' 2025-06-01T18:25:30,727 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt' 2025-06-01T18:25:30,747 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt' 2025-06-01T18:25:30,751 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt' 2025-06-01T18:25:30,778 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt' 2025-06-01T18:25:30,837 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt' 2025-06-01T18:25:30,858 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt' 2025-06-01T18:25:30,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt' 2025-06-01T18:25:30,899 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt' 2025-06-01T18:25:30,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt' 2025-06-01T18:25:30,942 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt' 2025-06-01T18:25:30,974 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt' 2025-06-01T18:25:30,987 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt' 2025-06-01T18:25:31,004 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt' 2025-06-01T18:25:31,039 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt' 2025-06-01T18:25:31,108 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt' 2025-06-01T18:25:31,143 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt' 2025-06-01T18:25:31,194 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt' 2025-06-01T18:25:31,240 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt' 2025-06-01T18:25:31,276 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt' 2025-06-01T18:25:31,333 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt' 2025-06-01T18:25:31,365 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt' 2025-06-01T18:25:31,398 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt' 2025-06-01T18:25:31,401 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt' 2025-06-01T18:25:31,426 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt' 2025-06-01T18:25:31,429 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt' 2025-06-01T18:25:31,449 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt' 2025-06-01T18:25:31,457 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt' 2025-06-01T18:25:31,465 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt' 2025-06-01T18:25:31,473 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt' 2025-06-01T18:25:31,481 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt' 2025-06-01T18:25:31,490 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt' 2025-06-01T18:25:31,498 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt' 2025-06-01T18:25:31,505 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt' 2025-06-01T18:25:31,512 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt' 2025-06-01T18:25:31,518 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt' 2025-06-01T18:25:31,554 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt' 2025-06-01T18:25:31,564 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt' 2025-06-01T18:25:31,582 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt' 2025-06-01T18:25:31,603 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt' 2025-06-01T18:25:31,621 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt' 2025-06-01T18:25:31,649 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt' 2025-06-01T18:25:31,702 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt' 2025-06-01T18:25:31,718 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt' 2025-06-01T18:25:31,734 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt' 2025-06-01T18:25:31,745 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt' 2025-06-01T18:25:31,746 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt' 2025-06-01T18:25:31,757 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt' 2025-06-01T18:25:31,758 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt' 2025-06-01T18:25:31,791 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt' 2025-06-01T18:25:31,805 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt' 2025-06-01T18:25:31,820 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt' 2025-06-01T18:25:31,834 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt' 2025-06-01T18:25:31,850 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt' 2025-06-01T18:25:31,865 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt' 2025-06-01T18:25:31,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt' 2025-06-01T18:25:31,892 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt' 2025-06-01T18:25:31,904 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt' 2025-06-01T18:25:31,916 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt' 2025-06-01T18:25:31,976 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt' 2025-06-01T18:25:31,993 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt' 2025-06-01T18:25:32,025 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt' 2025-06-01T18:25:32,061 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt' 2025-06-01T18:25:32,093 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt' 2025-06-01T18:25:32,122 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt' 2025-06-01T18:25:32,145 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt' 2025-06-01T18:25:32,173 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt' 2025-06-01T18:25:32,199 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt' 2025-06-01T18:25:32,218 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt' 2025-06-01T18:25:32,221 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt' 2025-06-01T18:25:32,240 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt' 2025-06-01T18:25:32,243 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt' 2025-06-01T18:25:32,245 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt' 2025-06-01T18:25:32,249 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt' 2025-06-01T18:25:32,255 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt' 2025-06-01T18:25:32,258 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt' 2025-06-01T18:25:32,260 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt' 2025-06-01T18:25:32,261 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt' 2025-06-01T18:25:32,264 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt' 2025-06-01T18:25:32,269 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt' 2025-06-01T18:25:32,271 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt' 2025-06-01T18:25:32,274 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt' 2025-06-01T18:25:32,278 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt' 2025-06-01T18:25:32,282 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt' 2025-06-01T18:25:32,286 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt' 2025-06-01T18:25:32,289 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt' 2025-06-01T18:25:32,293 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt' 2025-06-01T18:25:32,298 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt' 2025-06-01T18:25:32,301 adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt' 2025-06-01T18:25:32,303 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py' 2025-06-01T18:25:32,310 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt' 2025-06-01T18:25:32,321 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt' 2025-06-01T18:25:32,330 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt' 2025-06-01T18:25:32,333 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt' 2025-06-01T18:25:32,338 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt' 2025-06-01T18:25:32,342 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt' 2025-06-01T18:25:32,349 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt' 2025-06-01T18:25:32,358 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt' 2025-06-01T18:25:32,361 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt' 2025-06-01T18:25:32,372 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt' 2025-06-01T18:25:32,393 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt' 2025-06-01T18:25:32,398 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt' 2025-06-01T18:25:32,400 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt' 2025-06-01T18:25:32,403 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt' 2025-06-01T18:25:32,416 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt' 2025-06-01T18:25:32,426 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt' 2025-06-01T18:25:32,433 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt' 2025-06-01T18:25:32,441 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt' 2025-06-01T18:25:32,451 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt' 2025-06-01T18:25:32,459 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt' 2025-06-01T18:25:32,465 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt' 2025-06-01T18:25:32,473 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt' 2025-06-01T18:25:32,481 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt' 2025-06-01T18:25:32,482 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt' 2025-06-01T18:25:32,489 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt' 2025-06-01T18:25:32,500 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt' 2025-06-01T18:25:32,509 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt' 2025-06-01T18:25:32,511 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt' 2025-06-01T18:25:32,516 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt' 2025-06-01T18:25:32,520 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt' 2025-06-01T18:25:32,527 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt' 2025-06-01T18:25:32,536 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt' 2025-06-01T18:25:32,539 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt' 2025-06-01T18:25:32,550 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt' 2025-06-01T18:25:32,571 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt' 2025-06-01T18:25:32,575 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt' 2025-06-01T18:25:32,578 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt' 2025-06-01T18:25:32,581 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt' 2025-06-01T18:25:32,593 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt' 2025-06-01T18:25:32,603 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt' 2025-06-01T18:25:32,610 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt' 2025-06-01T18:25:32,618 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt' 2025-06-01T18:25:32,627 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt' 2025-06-01T18:25:32,635 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt' 2025-06-01T18:25:32,641 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt' 2025-06-01T18:25:32,648 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt' 2025-06-01T18:25:32,656 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt' 2025-06-01T18:25:32,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt' 2025-06-01T18:25:32,680 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt' 2025-06-01T18:25:32,711 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt' 2025-06-01T18:25:32,741 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt' 2025-06-01T18:25:32,768 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt' 2025-06-01T18:25:32,770 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt' 2025-06-01T18:25:32,820 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt' 2025-06-01T18:25:32,848 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt' 2025-06-01T18:25:32,854 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt' 2025-06-01T18:25:32,859 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt' 2025-06-01T18:25:32,863 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt' 2025-06-01T18:25:32,866 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt' 2025-06-01T18:25:32,869 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt' 2025-06-01T18:25:32,873 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt' 2025-06-01T18:25:32,876 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt' 2025-06-01T18:25:32,881 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt' 2025-06-01T18:25:32,886 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt' 2025-06-01T18:25:32,888 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt' 2025-06-01T18:25:32,900 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt' 2025-06-01T18:25:32,908 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt' 2025-06-01T18:25:32,912 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt' 2025-06-01T18:25:32,914 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt' 2025-06-01T18:25:32,917 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt' 2025-06-01T18:25:32,921 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt' 2025-06-01T18:25:32,924 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt' 2025-06-01T18:25:32,927 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt' 2025-06-01T18:25:32,931 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt' 2025-06-01T18:25:32,934 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt' 2025-06-01T18:25:32,936 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt' 2025-06-01T18:25:32,942 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt' 2025-06-01T18:25:32,945 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt' 2025-06-01T18:25:32,947 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt' 2025-06-01T18:25:32,949 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt' 2025-06-01T18:25:32,951 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt' 2025-06-01T18:25:32,953 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt' 2025-06-01T18:25:32,955 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt' 2025-06-01T18:25:32,957 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt' 2025-06-01T18:25:32,959 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt' 2025-06-01T18:25:32,961 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt' 2025-06-01T18:25:32,965 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt' 2025-06-01T18:25:32,969 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt' 2025-06-01T18:25:32,977 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt' 2025-06-01T18:25:32,984 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt' 2025-06-01T18:25:32,989 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt' 2025-06-01T18:25:32,994 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt' 2025-06-01T18:25:33,003 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt' 2025-06-01T18:25:33,010 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt' 2025-06-01T18:25:33,020 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt' 2025-06-01T18:25:33,034 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt' 2025-06-01T18:25:33,040 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt' 2025-06-01T18:25:33,046 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt' 2025-06-01T18:25:33,054 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt' 2025-06-01T18:25:33,060 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt' 2025-06-01T18:25:33,065 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt' 2025-06-01T18:25:33,074 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt' 2025-06-01T18:25:33,077 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt' 2025-06-01T18:25:33,083 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt' 2025-06-01T18:25:33,095 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt' 2025-06-01T18:25:33,114 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt' 2025-06-01T18:25:33,123 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt' 2025-06-01T18:25:33,137 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt' 2025-06-01T18:25:33,149 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt' 2025-06-01T18:25:33,159 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt' 2025-06-01T18:25:33,180 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt' 2025-06-01T18:25:33,189 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt' 2025-06-01T18:25:33,200 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt' 2025-06-01T18:25:33,208 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt' 2025-06-01T18:25:33,210 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt' 2025-06-01T18:25:33,219 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt' 2025-06-01T18:25:33,234 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt' 2025-06-01T18:25:33,239 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt' 2025-06-01T18:25:33,246 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt' 2025-06-01T18:25:33,253 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt' 2025-06-01T18:25:33,259 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt' 2025-06-01T18:25:33,264 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt' 2025-06-01T18:25:33,273 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt' 2025-06-01T18:25:33,276 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt' 2025-06-01T18:25:33,282 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt' 2025-06-01T18:25:33,293 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt' 2025-06-01T18:25:33,312 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt' 2025-06-01T18:25:33,322 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt' 2025-06-01T18:25:33,336 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt' 2025-06-01T18:25:33,348 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt' 2025-06-01T18:25:33,359 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt' 2025-06-01T18:25:33,379 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt' 2025-06-01T18:25:33,388 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt' 2025-06-01T18:25:33,399 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt' 2025-06-01T18:25:33,407 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt' 2025-06-01T18:25:33,409 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt' 2025-06-01T18:25:33,419 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt' 2025-06-01T18:25:33,434 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt' 2025-06-01T18:25:33,440 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt' 2025-06-01T18:25:33,447 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt' 2025-06-01T18:25:33,454 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt' 2025-06-01T18:25:33,461 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt' 2025-06-01T18:25:33,466 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt' 2025-06-01T18:25:33,475 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt' 2025-06-01T18:25:33,479 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt' 2025-06-01T18:25:33,485 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt' 2025-06-01T18:25:33,497 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt' 2025-06-01T18:25:33,516 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt' 2025-06-01T18:25:33,526 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt' 2025-06-01T18:25:33,540 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt' 2025-06-01T18:25:33,553 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt' 2025-06-01T18:25:33,564 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt' 2025-06-01T18:25:33,585 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt' 2025-06-01T18:25:33,595 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt' 2025-06-01T18:25:33,606 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt' 2025-06-01T18:25:33,614 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt' 2025-06-01T18:25:33,616 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt' 2025-06-01T18:25:33,631 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt' 2025-06-01T18:25:33,636 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt' 2025-06-01T18:25:33,641 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt' 2025-06-01T18:25:33,646 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt' 2025-06-01T18:25:33,651 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt' 2025-06-01T18:25:33,657 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt' 2025-06-01T18:25:33,662 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt' 2025-06-01T18:25:33,666 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt' 2025-06-01T18:25:33,670 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt' 2025-06-01T18:25:33,675 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt' 2025-06-01T18:25:33,707 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt' 2025-06-01T18:25:33,712 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt' 2025-06-01T18:25:33,726 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt' 2025-06-01T18:25:33,745 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt' 2025-06-01T18:25:33,759 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt' 2025-06-01T18:25:33,773 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt' 2025-06-01T18:25:33,781 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt' 2025-06-01T18:25:33,794 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt' 2025-06-01T18:25:33,806 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt' 2025-06-01T18:25:33,813 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt' 2025-06-01T18:25:33,815 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt' 2025-06-01T18:25:33,823 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt' 2025-06-01T18:25:33,824 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt' 2025-06-01T18:25:33,842 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt' 2025-06-01T18:25:33,849 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt' 2025-06-01T18:25:33,856 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt' 2025-06-01T18:25:33,863 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt' 2025-06-01T18:25:33,870 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt' 2025-06-01T18:25:33,878 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt' 2025-06-01T18:25:33,884 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt' 2025-06-01T18:25:33,891 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt' 2025-06-01T18:25:33,906 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt' 2025-06-01T18:25:33,912 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt' 2025-06-01T18:25:33,953 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt' 2025-06-01T18:25:33,960 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt' 2025-06-01T18:25:33,981 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt' 2025-06-01T18:25:34,004 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt' 2025-06-01T18:25:34,024 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt' 2025-06-01T18:25:34,042 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt' 2025-06-01T18:25:34,056 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt' 2025-06-01T18:25:34,072 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt' 2025-06-01T18:25:34,087 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt' 2025-06-01T18:25:34,097 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt' 2025-06-01T18:25:34,099 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt' 2025-06-01T18:25:34,111 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt' 2025-06-01T18:25:34,112 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt' 2025-06-01T18:25:34,115 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt' 2025-06-01T18:25:34,118 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt' 2025-06-01T18:25:34,136 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt' 2025-06-01T18:25:34,138 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt' 2025-06-01T18:25:34,139 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt' 2025-06-01T18:25:34,142 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt' 2025-06-01T18:25:34,146 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt' 2025-06-01T18:25:34,147 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt' 2025-06-01T18:25:34,150 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt' 2025-06-01T18:25:34,153 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt' 2025-06-01T18:25:34,158 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt' 2025-06-01T18:25:34,161 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt' 2025-06-01T18:25:34,163 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt' 2025-06-01T18:25:34,167 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt' 2025-06-01T18:25:34,171 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt' 2025-06-01T18:25:34,174 adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt' 2025-06-01T18:25:34,176 adding 'SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py' 2025-06-01T18:25:34,188 adding 'SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py' 2025-06-01T18:25:34,193 adding 'SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py' 2025-06-01T18:25:34,199 adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py' 2025-06-01T18:25:34,200 adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py' 2025-06-01T18:25:34,201 adding 'SigProfilerMatrixGenerator/scripts/__init__.py' 2025-06-01T18:25:34,204 adding 'SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py' 2025-06-01T18:25:34,205 adding 'SigProfilerMatrixGenerator/scripts/ref_install.py' 2025-06-01T18:25:34,209 adding 'SigProfilerMatrixGenerator/scripts/reference_genome_manager.py' 2025-06-01T18:25:34,210 adding 'SigProfilerMatrixGenerator/scripts/save_chrom_strings.py' 2025-06-01T18:25:34,212 adding 'SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py' 2025-06-01T18:25:34,214 adding 'SigProfilerMatrixGenerator/scripts/save_context_distribution.py' 2025-06-01T18:25:34,217 adding 'SigProfilerMatrixGenerator/scripts/save_tsb_192.py' 2025-06-01T18:25:34,219 adding 'SigProfilerMatrixGenerator/scripts/vcfToBedpe.py' 2025-06-01T18:25:34,238 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt' 2025-06-01T18:25:34,239 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt' 2025-06-01T18:25:34,259 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt' 2025-06-01T18:25:34,260 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt' 2025-06-01T18:25:34,262 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py' 2025-06-01T18:25:34,281 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt' 2025-06-01T18:25:34,283 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt' 2025-06-01T18:25:34,302 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt' 2025-06-01T18:25:34,304 adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt' 2025-06-01T18:25:34,306 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/licenses/LICENSE' 2025-06-01T18:25:34,309 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/METADATA' 2025-06-01T18:25:34,310 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/WHEEL' 2025-06-01T18:25:34,311 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/entry_points.txt' 2025-06-01T18:25:34,312 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/top_level.txt' 2025-06-01T18:25:34,330 adding 'sigprofilermatrixgenerator-1.3.3.dist-info/RECORD' 2025-06-01T18:25:34,840 removing build/bdist.linux-armv7l/wheel 2025-06-01T18:25:35,214 Building wheel for sigprofilermatrixgenerator (setup.py): finished with status 'done' 2025-06-01T18:25:36,570 Created wheel for sigprofilermatrixgenerator: filename=sigprofilermatrixgenerator-1.3.3-py3-none-any.whl size=47466879 sha256=3ee008e7dff45c139336f775605132d164b1c62d70f26f5ac9c5fbad4f661a35 2025-06-01T18:25:36,571 Stored in directory: /tmp/pip-ephem-wheel-cache-c7w53ugw/wheels/57/e3/a2/f3aba8d0b67300ebc3dd79a8b1672599e82178f9ff42a65f15 2025-06-01T18:25:41,235 Successfully built sigprofilermatrixgenerator 2025-06-01T18:25:42,902 Removed build tracker: '/tmp/pip-build-tracker-54hicaz7'