2025-06-02T08:59:57,980 Created temporary directory: /tmp/pip-build-tracker-r08r8tb2
2025-06-02T08:59:57,982 Initialized build tracking at /tmp/pip-build-tracker-r08r8tb2
2025-06-02T08:59:57,983 Created build tracker: /tmp/pip-build-tracker-r08r8tb2
2025-06-02T08:59:57,983 Entered build tracker: /tmp/pip-build-tracker-r08r8tb2
2025-06-02T08:59:57,984 Created temporary directory: /tmp/pip-wheel-ifuz_rpo
2025-06-02T08:59:57,988 Created temporary directory: /tmp/pip-ephem-wheel-cache-6j_ny1g3
2025-06-02T08:59:58,038 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-02T08:59:58,040 2 location(s) to search for versions of wwpdb-utils-emdb:
2025-06-02T08:59:58,040 * https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,040 * https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,041 Fetching project page and analyzing links: https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,042 Getting page https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,044 Found index url https://pypi.org/simple/
2025-06-02T08:59:58,264 Fetched page https://pypi.org/simple/wwpdb-utils-emdb/ as application/vnd.pypi.simple.v1+json
2025-06-02T08:59:58,271   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/e4/6b/cd29b7e6a18b5cb6900bbeaa82b2a57a82f156ef1484ade93cc0161120e3/wwpdb.utils.emdb-0.17.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,271   Found link https://files.pythonhosted.org/packages/c7/71/97b1ad4dc41b921f129625ae155fa0cbb571531f53735f2bac18af2f155e/wwpdb.utils.emdb-0.17.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev1
2025-06-02T08:59:58,272   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/4f/82/cfb7e14749778943ffa246f9ae7e16f1db56e54272cfe7d9e50cb43e801a/wwpdb.utils.emdb-0.17.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,273   Found link https://files.pythonhosted.org/packages/0b/b8/99ae0b81475ec00734c681affe0f3e0bedada231fa6f3bb45e74836e160f/wwpdb.utils.emdb-0.17.dev2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev2
2025-06-02T08:59:58,273   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/37/81/cc80b184507eefd3a3bac5eea9e197e4a4b7c3a85561e0a7c05d7a67c26a/wwpdb.utils.emdb-0.17.dev3-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,274   Found link https://files.pythonhosted.org/packages/7c/21/adc194f4f64c450239f72966e08798d7ab7569cc7f30847e42d2f90bdc2c/wwpdb.utils.emdb-0.17.dev3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev3
2025-06-02T08:59:58,275   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/ed/c8/a8d6f4397d82cc105c4e3b72e0c581b2e49a5b732dbb446d228b464835e5/wwpdb.utils.emdb-0.17.dev4-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,275   Found link https://files.pythonhosted.org/packages/68/4c/16b39751be7b36fbd5ca19d3704c3363089d353c2f0deb0a3e7295322bed/wwpdb.utils.emdb-0.17.dev4.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev4
2025-06-02T08:59:58,276   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/5b/1b/691f386de795fa7daf6e7498aed2aec28f890659de9d27e2bac7b97fc6e4/wwpdb.utils.emdb-0.17.dev5-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,277   Found link https://files.pythonhosted.org/packages/63/15/972c36a225f33f25966ce683935dc1e91b38a420ede4d6fac6f920db7486/wwpdb.utils.emdb-0.17.dev5.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev5
2025-06-02T08:59:58,277   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/03/60/fae10b43b39d42be7628c346315258182617324063494daab1e810e49fd3/wwpdb.utils.emdb-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,278   Found link https://files.pythonhosted.org/packages/0e/bc/e9e5d76046347d72762aa539dba5f80dd87cdc1966aee5ef866665b218dd/wwpdb.utils.emdb-0.17.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17
2025-06-02T08:59:58,279   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c4/4a/7c04212dd000a4bf7373e9bcd9a8204f37faac616a7a635c90a55900ddcf/wwpdb.utils.emdb-0.18.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,279   Found link https://files.pythonhosted.org/packages/fd/6f/22272f5b1db34ba594c03c65bf404032ce79036e50d5cf5d7f13f40a5046/wwpdb.utils.emdb-0.18.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.18.dev1
2025-06-02T08:59:58,280   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c8/34/88ddc7a182feba8963c87cf0f4a50cac8fe8d28f9c7ea5a147dd2201ce04/wwpdb.utils.emdb-0.18.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,281   Found link https://files.pythonhosted.org/packages/3f/68/9183d0ee93c5d22a4b3d023b485e90a1f1bb8df90a6ebaa3438867b007ad/wwpdb.utils.emdb-0.18.dev2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.18.dev2
2025-06-02T08:59:58,281   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/f4/54/a283c43315bb19d33353389f3d28e31f715e7e5a37054d9e79033373e953/wwpdb.utils.emdb-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,282   Found link https://files.pythonhosted.org/packages/bc/41/cef5c9914d65e70c678b23eccb6b61b665de7ac5ebd5b3821416083a7136/wwpdb.utils.emdb-0.19.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.19
2025-06-02T08:59:58,283   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/7a/a2/61033a93601cbe6bec8b36cf6c5c97a8db77bb9311df4c9aefdd29820e21/wwpdb.utils.emdb-0.20.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,283   Found link https://files.pythonhosted.org/packages/2c/6a/59351fd024bda09d21785f99cedf31c268f1ede51953a9e72372b5ebf70b/wwpdb.utils.emdb-0.20.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.20.dev1
2025-06-02T08:59:58,284   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c6/fb/5e6fc23a549145bd27236024a21344b14f722141db3189a614f6304c313a/wwpdb.utils.emdb-0.20-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T08:59:58,285   Found link https://files.pythonhosted.org/packages/70/1a/64831912f4e4cece786e9e79dc55d5a70e4de45bb341ac51f02a29f9f3eb/wwpdb.utils.emdb-0.20.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.20
2025-06-02T08:59:58,285   Found link https://files.pythonhosted.org/packages/89/b6/dd1281921231718e564b22d7ed87eb92906d9a92910a68f59be4053acf48/wwpdb.utils.emdb-0.21.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.21.dev1
2025-06-02T08:59:58,286   Found link https://files.pythonhosted.org/packages/b6/be/41e784e4ae252a76602b468be5c0a5b4d9a6d25c37dfb48214348bcae988/wwpdb.utils.emdb-0.21.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.21
2025-06-02T08:59:58,287   Found link https://files.pythonhosted.org/packages/c8/3a/70341fe8c0eadbcab5d8e48e9c5a372d9b3943e2593b0d0574a0cfb319ca/wwpdb.utils.emdb-0.22.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.22
2025-06-02T08:59:58,287   Found link https://files.pythonhosted.org/packages/96/67/53035231bcd2e7cecb692bbd76ae03e1c513b57c54c8c330052bb7d12b00/wwpdb.utils.emdb-1.0.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0
2025-06-02T08:59:58,288   Found link https://files.pythonhosted.org/packages/49/be/a598ef3f897cc36cffb09c0ee7e1f5acec88f3bd45ab4ffaed5e53da988b/wwpdb.utils.emdb-1.0.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0.1
2025-06-02T08:59:58,289   Found link https://files.pythonhosted.org/packages/17/c4/a4294d38f9327a0bd51deee6e73e9e19bc3044ad5831b3ff419f2ce24f46/wwpdb.utils.emdb-1.0.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0.2
2025-06-02T08:59:58,290   Found link https://files.pythonhosted.org/packages/6e/10/a90d10dd1a0a50ebca3bf42ecbc2bfdab4f6193cb09d5c963ff358bdb196/wwpdb.utils.emdb-1.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.1
2025-06-02T08:59:58,290   Found link https://files.pythonhosted.org/packages/8f/9d/b1dec6ee336940c23bfbe48e27f4da5738d8d7bf5b078dad2e9d7e0ce5bd/wwpdb.utils.emdb-1.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.2
2025-06-02T08:59:58,291   Found link https://files.pythonhosted.org/packages/f1/18/a56d35874d6a723c8bda6cbf7042f0b14d6675e406bae95ebbe28bc4a24d/wwpdb.utils.emdb-1.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.3
2025-06-02T08:59:58,291   Found link https://files.pythonhosted.org/packages/d8/66/ba9f56f9849b940ce1eb33697afde055a67773cf8ae288baf0f6285e2ca7/wwpdb.utils.emdb-1.4.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4
2025-06-02T08:59:58,292   Found link https://files.pythonhosted.org/packages/ab/37/d0aed09af6a0257a9a40ff21b5c864c5cc26babb6786fdfc864c31c8c9e1/wwpdb.utils.emdb-1.4.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.1
2025-06-02T08:59:58,293   Found link https://files.pythonhosted.org/packages/9c/b4/8147abc8ffe8678e7f504310264f40ea016c71953a8d0f254388dc586cf5/wwpdb.utils.emdb-1.4.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.2
2025-06-02T08:59:58,293   Found link https://files.pythonhosted.org/packages/3a/86/9eb0994dc31303421b06591ac856173716454e29e29fe5305d314ee79656/wwpdb.utils.emdb-1.4.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.3
2025-06-02T08:59:58,294   Found link https://files.pythonhosted.org/packages/22/aa/2d2b188ad23ae0ad8349dc8e457b758029190b8910e8a3550cf5bafbc92c/wwpdb.utils.emdb-1.5.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.5
2025-06-02T08:59:58,295   Found link https://files.pythonhosted.org/packages/85/df/427630c38d54a8a7cb3cc63e4f7392c7e74a4febbc14c09124de61366f50/wwpdb.utils.emdb-1.5.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.5.1
2025-06-02T08:59:58,295   Found link https://files.pythonhosted.org/packages/cd/e3/0a9f818d6c77b9018bf1b257bc58a7414d4e100181304b968efe2b653897/wwpdb.utils.emdb-1.6.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.6
2025-06-02T08:59:58,296   Found link https://files.pythonhosted.org/packages/76/f5/633642fe5034b658366e8b843d8cbedaacfc3911b0cb6993d981d8de0656/wwpdb.utils.emdb-1.6.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.6.1
2025-06-02T08:59:58,297   Found link https://files.pythonhosted.org/packages/d0/7c/abfef64f8e5d8478bafe3f15c60ada57ffed7f9579171001f5dd18a29a75/wwpdb.utils.emdb-1.7.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.7
2025-06-02T08:59:58,297   Found link https://files.pythonhosted.org/packages/12/15/ccfb3d4bdad665a12d76f9006b11c80c65c2d52e6508b03f140c4a462e64/wwpdb.utils.emdb-1.7.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.7.1
2025-06-02T08:59:58,298   Found link https://files.pythonhosted.org/packages/7e/54/eaf27a4d50d0b5a5b659aa778fe35f179579978726b32f2af46392d2529a/wwpdb.utils.emdb-1.8.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8
2025-06-02T08:59:58,299   Found link https://files.pythonhosted.org/packages/a4/8b/1cabc5852353513e58516a2417fa19935a8e892f1021f9c8e43ec62dd047/wwpdb_utils_emdb-1.8.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8.1
2025-06-02T08:59:58,299   Found link https://files.pythonhosted.org/packages/5c/06/1fc28acdd958fe6a739afcbfe42f171caccc4227643f22f7817d30dd5508/wwpdb_utils_emdb-1.8.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8.2
2025-06-02T08:59:58,300   Found link https://files.pythonhosted.org/packages/9c/ab/daba44555dc30440234f459feedc512a74f16aa094f52a22eba897182c6c/wwpdb_utils_emdb-1.9.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.9
2025-06-02T08:59:58,301   Found link https://files.pythonhosted.org/packages/2e/11/8b0e1816b711004d8f0d38935aea1b2c68f8e6dc88e5d6ba1e6db6ef90b2/wwpdb_utils_emdb-1.10.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.10
2025-06-02T08:59:58,301   Found link https://files.pythonhosted.org/packages/f3/e7/0a662612f5a69eea908240bc0350da3d8a25ad75deb728a4266a03508d56/wwpdb_utils_emdb-1.11.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.11
2025-06-02T08:59:58,302   Found link https://files.pythonhosted.org/packages/02/34/c2cff67e72debca8cd69100bbeb0db1aee8dc3c56320976420fcb1b2cd8a/wwpdb_utils_emdb-1.12.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.12
2025-06-02T08:59:58,303   Found link https://files.pythonhosted.org/packages/f6/46/ba491083bb780b932aefb336532363bdf293610d79fc208bbd42daa54717/wwpdb_utils_emdb-1.13.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.13
2025-06-02T08:59:58,303   Found link https://files.pythonhosted.org/packages/5b/07/d849e17c4e1685ad4ea8a811d521c28c1525b6c6fd2e0f5cb896ec873464/wwpdb_utils_emdb-1.13.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.13.1
2025-06-02T08:59:58,304   Found link https://files.pythonhosted.org/packages/7d/07/fb02b6c9a73877af437b3066ad31ec078c2294b4c80ea2b6f92c8b8e7e8c/wwpdb_utils_emdb-1.14.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.14
2025-06-02T08:59:58,305 Fetching project page and analyzing links: https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,306 Getting page https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T08:59:58,307 Found index url https://www.piwheels.org/simple/
2025-06-02T08:59:58,461 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T08:59:59,109 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T09:00:00,259 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T09:00:02,477 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T09:00:06,713 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T09:00:06,932 Could not fetch URL https://www.piwheels.org/simple/wwpdb-utils-emdb/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/wwpdb-utils-emdb/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-02T09:00:06,934 Skipping link: not a file: https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T09:00:06,935 Skipping link: not a file: https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T09:00:06,957 Given no hashes to check 1 links for project 'wwpdb-utils-emdb': discarding no candidates
2025-06-02T09:00:06,960 Collecting wwpdb-utils-emdb==1.13
2025-06-02T09:00:06,962   Created temporary directory: /tmp/pip-unpack-gnjwx0m0
2025-06-02T09:00:07,197   Downloading wwpdb_utils_emdb-1.13.tar.gz (275 kB)
2025-06-02T09:00:07,444   Added wwpdb-utils-emdb==1.13 from https://files.pythonhosted.org/packages/f6/46/ba491083bb780b932aefb336532363bdf293610d79fc208bbd42daa54717/wwpdb_utils_emdb-1.13.tar.gz to build tracker '/tmp/pip-build-tracker-r08r8tb2'
2025-06-02T09:00:07,445   Running setup.py (path:/tmp/pip-wheel-ifuz_rpo/wwpdb-utils-emdb_a71625982c07463083ed5b9cc300cf56/setup.py) egg_info for package wwpdb-utils-emdb
2025-06-02T09:00:07,446   Created temporary directory: /tmp/pip-pip-egg-info-f9h9vvex
2025-06-02T09:00:07,447   Preparing metadata (setup.py): started
2025-06-02T09:00:07,448   Running command python setup.py egg_info
2025-06-02T09:00:08,039   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-06-02T09:00:08,039     warnings.warn(msg)
2025-06-02T09:00:08,040   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-06-02T09:00:08,040     warnings.warn(msg)
2025-06-02T09:00:08,362   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-02T09:00:08,362   !!

2025-06-02T09:00:08,363           ********************************************************************************
2025-06-02T09:00:08,364           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-02T09:00:08,365           License :: OSI Approved :: Apache Software License

2025-06-02T09:00:08,366           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-02T09:00:08,367           ********************************************************************************

2025-06-02T09:00:08,368   !!
2025-06-02T09:00:08,369     self._finalize_license_expression()
2025-06-02T09:00:08,393   running egg_info
2025-06-02T09:00:08,423   creating /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info
2025-06-02T09:00:08,424   writing /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/PKG-INFO
2025-06-02T09:00:08,429   writing dependency_links to /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/dependency_links.txt
2025-06-02T09:00:08,431   writing entry points to /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/entry_points.txt
2025-06-02T09:00:08,433   writing requirements to /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/requires.txt
2025-06-02T09:00:08,434   writing top-level names to /tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/top_level.txt
2025-06-02T09:00:08,435   writing manifest file '/tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T09:00:08,545   reading manifest file '/tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T09:00:08,546   reading manifest template 'MANIFEST.in'
2025-06-02T09:00:08,548   warning: no previously-included files matching '*' found under directory 'wwpdb/utils/emdb/emdb_xml2cif_translator'
2025-06-02T09:00:08,553   writing manifest file '/tmp/pip-pip-egg-info-f9h9vvex/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T09:00:08,657   Preparing metadata (setup.py): finished with status 'done'
2025-06-02T09:00:08,661   Source in /tmp/pip-wheel-ifuz_rpo/wwpdb-utils-emdb_a71625982c07463083ed5b9cc300cf56 has version 1.13, which satisfies requirement wwpdb-utils-emdb==1.13 from https://files.pythonhosted.org/packages/f6/46/ba491083bb780b932aefb336532363bdf293610d79fc208bbd42daa54717/wwpdb_utils_emdb-1.13.tar.gz
2025-06-02T09:00:08,662   Removed wwpdb-utils-emdb==1.13 from https://files.pythonhosted.org/packages/f6/46/ba491083bb780b932aefb336532363bdf293610d79fc208bbd42daa54717/wwpdb_utils_emdb-1.13.tar.gz from build tracker '/tmp/pip-build-tracker-r08r8tb2'
2025-06-02T09:00:08,668 Created temporary directory: /tmp/pip-unpack-pz7aqe2t
2025-06-02T09:00:08,670 Created temporary directory: /tmp/pip-unpack-_jl0antp
2025-06-02T09:00:08,670 Building wheels for collected packages: wwpdb-utils-emdb
2025-06-02T09:00:08,676   Created temporary directory: /tmp/pip-wheel-814_q7f6
2025-06-02T09:00:08,677   DEPRECATION: Building 'wwpdb-utils-emdb' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'wwpdb-utils-emdb'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-02T09:00:08,678   Building wheel for wwpdb-utils-emdb (setup.py): started
2025-06-02T09:00:08,679   Destination directory: /tmp/pip-wheel-814_q7f6
2025-06-02T09:00:08,680   Running command python setup.py bdist_wheel
2025-06-02T09:00:09,241   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-06-02T09:00:09,241     warnings.warn(msg)
2025-06-02T09:00:09,242   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-06-02T09:00:09,242     warnings.warn(msg)
2025-06-02T09:00:09,545   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-02T09:00:09,546   !!

2025-06-02T09:00:09,547           ********************************************************************************
2025-06-02T09:00:09,548           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-02T09:00:09,549           License :: OSI Approved :: Apache Software License

2025-06-02T09:00:09,550           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-02T09:00:09,551           ********************************************************************************

2025-06-02T09:00:09,552   !!
2025-06-02T09:00:09,553     self._finalize_license_expression()
2025-06-02T09:00:09,553   running bdist_wheel
2025-06-02T09:00:09,636   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated
2025-06-02T09:00:09,637   !!

2025-06-02T09:00:09,638           ********************************************************************************
2025-06-02T09:00:09,639           With Python 2.7 end-of-life, support for building universal wheels
2025-06-02T09:00:09,639           (i.e., wheels that support both Python 2 and Python 3)
2025-06-02T09:00:09,640           is being obviated.
2025-06-02T09:00:09,641           Please discontinue using this option, or if you still need it,
2025-06-02T09:00:09,641           file an issue with pypa/setuptools describing your use case.

2025-06-02T09:00:09,643           By 2025-Aug-30, you need to update your project and remove deprecated calls
2025-06-02T09:00:09,643           or your builds will no longer be supported.
2025-06-02T09:00:09,644           ********************************************************************************

2025-06-02T09:00:09,645   !!
2025-06-02T09:00:09,646     self.finalize_options()
2025-06-02T09:00:09,696   running build
2025-06-02T09:00:09,697   running build_py
2025-06-02T09:00:09,730   creating build/lib/wwpdb
2025-06-02T09:00:09,733   copying wwpdb/__init__.py -> build/lib/wwpdb
2025-06-02T09:00:09,736   creating build/lib/wwpdb/utils
2025-06-02T09:00:09,737   copying wwpdb/utils/__init__.py -> build/lib/wwpdb/utils
2025-06-02T09:00:09,740   creating build/lib/wwpdb/utils/emdb
2025-06-02T09:00:09,741   copying wwpdb/utils/emdb/EmdbSchema.py -> build/lib/wwpdb/utils/emdb
2025-06-02T09:00:09,743   copying wwpdb/utils/emdb/__init__.py -> build/lib/wwpdb/utils/emdb
2025-06-02T09:00:09,746   creating build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,748   copying wwpdb/utils/emdb/cif_emdb_translator/simple_test.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,750   copying wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,753   copying wwpdb/utils/emdb/cif_emdb_translator/emdb.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,816   copying wwpdb/utils/emdb/cif_emdb_translator/__init__.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,818   copying wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:09,834   creating build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:09,835   copying wwpdb/utils/emdb/checkemupload/__init__.py -> build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:09,837   copying wwpdb/utils/emdb/checkemupload/checkemupload.py -> build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:09,841   creating build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:09,843   copying wwpdb/utils/emdb/atomcheck/__init__.py -> build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:09,844   copying wwpdb/utils/emdb/atomcheck/atomcheck.py -> build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:09,847   running egg_info
2025-06-02T09:00:09,877   writing wwpdb.utils.emdb.egg-info/PKG-INFO
2025-06-02T09:00:09,881   writing dependency_links to wwpdb.utils.emdb.egg-info/dependency_links.txt
2025-06-02T09:00:09,883   writing entry points to wwpdb.utils.emdb.egg-info/entry_points.txt
2025-06-02T09:00:09,885   writing requirements to wwpdb.utils.emdb.egg-info/requires.txt
2025-06-02T09:00:09,886   writing top-level names to wwpdb.utils.emdb.egg-info/top_level.txt
2025-06-02T09:00:09,932   reading manifest file 'wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T09:00:09,935   reading manifest template 'MANIFEST.in'
2025-06-02T09:00:09,936   warning: no previously-included files matching '*' found under directory 'wwpdb/utils/emdb/emdb_xml2cif_translator'
2025-06-02T09:00:09,941   writing manifest file 'wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T09:00:09,944   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'wwpdb.utils.emdb.data' is absent from the `packages` configuration.
2025-06-02T09:00:09,945   !!

2025-06-02T09:00:09,946           ********************************************************************************
2025-06-02T09:00:09,946           ############################
2025-06-02T09:00:09,947           # Package would be ignored #
2025-06-02T09:00:09,947           ############################
2025-06-02T09:00:09,948           Python recognizes 'wwpdb.utils.emdb.data' as an importable package[^1],
2025-06-02T09:00:09,949           but it is absent from setuptools' `packages` configuration.

2025-06-02T09:00:09,950           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-02T09:00:09,950           package, please make sure that 'wwpdb.utils.emdb.data' is explicitly added
2025-06-02T09:00:09,951           to the `packages` configuration field.

2025-06-02T09:00:09,952           Alternatively, you can also rely on setuptools' discovery methods
2025-06-02T09:00:09,952           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-02T09:00:09,953           instead of `find_packages(...)`/`find:`).

2025-06-02T09:00:09,954           You can read more about "package discovery" on setuptools documentation page:

2025-06-02T09:00:09,956           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-02T09:00:09,957           If you don't want 'wwpdb.utils.emdb.data' to be distributed and are
2025-06-02T09:00:09,957           already explicitly excluding 'wwpdb.utils.emdb.data' via
2025-06-02T09:00:09,958           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-02T09:00:09,958           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-02T09:00:09,959           combination with a more fine grained `package-data` configuration.

2025-06-02T09:00:09,960           You can read more about "package data files" on setuptools documentation page:

2025-06-02T09:00:09,961           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-02T09:00:09,963           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-02T09:00:09,963                 even if it does not contain any `.py` files.
2025-06-02T09:00:09,964                 On the other hand, currently there is no concept of package data
2025-06-02T09:00:09,964                 directory, all directories are treated like packages.
2025-06-02T09:00:09,965           ********************************************************************************

2025-06-02T09:00:09,966   !!
2025-06-02T09:00:09,967     check.warn(importable)
2025-06-02T09:00:09,967   creating build/lib/wwpdb/utils/emdb/data
2025-06-02T09:00:09,968   copying wwpdb/utils/emdb/data/emdb-v3.xsd -> build/lib/wwpdb/utils/emdb/data
2025-06-02T09:00:09,971   copying wwpdb/utils/emdb/cif_emdb_translator/README.md -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,005   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-02T09:00:10,006   !!

2025-06-02T09:00:10,007           ********************************************************************************
2025-06-02T09:00:10,007           Please avoid running ``setup.py`` directly.
2025-06-02T09:00:10,008           Instead, use pypa/build, pypa/installer or other
2025-06-02T09:00:10,008           standards-based tools.

2025-06-02T09:00:10,010           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-02T09:00:10,010           or your builds will no longer be supported.

2025-06-02T09:00:10,011           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-02T09:00:10,012           ********************************************************************************

2025-06-02T09:00:10,013   !!
2025-06-02T09:00:10,014     self.initialize_options()
2025-06-02T09:00:10,036   installing to build/bdist.linux-armv7l/wheel
2025-06-02T09:00:10,036   running install
2025-06-02T09:00:10,059   running install_lib
2025-06-02T09:00:10,088   creating build/bdist.linux-armv7l/wheel
2025-06-02T09:00:10,090   creating build/bdist.linux-armv7l/wheel/wwpdb
2025-06-02T09:00:10,092   copying build/lib/wwpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb
2025-06-02T09:00:10,095   creating build/bdist.linux-armv7l/wheel/wwpdb/utils
2025-06-02T09:00:10,097   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb
2025-06-02T09:00:10,099   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,100   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/README.md -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,103   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/simple_test.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,104   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,132   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/emdb.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,194   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,196   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T09:00:10,268   copying build/lib/wwpdb/utils/emdb/EmdbSchema.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb
2025-06-02T09:00:10,271   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:10,273   copying build/lib/wwpdb/utils/emdb/checkemupload/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:10,275   copying build/lib/wwpdb/utils/emdb/checkemupload/checkemupload.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/checkemupload
2025-06-02T09:00:10,279   copying build/lib/wwpdb/utils/emdb/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb
2025-06-02T09:00:10,282   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:10,284   copying build/lib/wwpdb/utils/emdb/atomcheck/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:10,286   copying build/lib/wwpdb/utils/emdb/atomcheck/atomcheck.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/atomcheck
2025-06-02T09:00:10,290   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/data
2025-06-02T09:00:10,291   copying build/lib/wwpdb/utils/emdb/data/emdb-v3.xsd -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/data
2025-06-02T09:00:10,299   copying build/lib/wwpdb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils
2025-06-02T09:00:10,301   running install_egg_info
2025-06-02T09:00:10,346   Copying wwpdb.utils.emdb.egg-info to build/bdist.linux-armv7l/wheel/./wwpdb.utils.emdb-1.13-py3.11.egg-info
2025-06-02T09:00:10,367   running install_scripts
2025-06-02T09:00:10,385   creating build/bdist.linux-armv7l/wheel/wwpdb_utils_emdb-1.13.dist-info/WHEEL
2025-06-02T09:00:10,389   creating '/tmp/pip-wheel-814_q7f6/wwpdb_utils_emdb-1.13-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-02T09:00:10,392   adding 'wwpdb/__init__.py'
2025-06-02T09:00:10,395   adding 'wwpdb/utils/__init__.py'
2025-06-02T09:00:10,399   adding 'wwpdb/utils/emdb/EmdbSchema.py'
2025-06-02T09:00:10,401   adding 'wwpdb/utils/emdb/__init__.py'
2025-06-02T09:00:10,404   adding 'wwpdb/utils/emdb/atomcheck/__init__.py'
2025-06-02T09:00:10,407   adding 'wwpdb/utils/emdb/atomcheck/atomcheck.py'
2025-06-02T09:00:10,410   adding 'wwpdb/utils/emdb/checkemupload/__init__.py'
2025-06-02T09:00:10,418   adding 'wwpdb/utils/emdb/checkemupload/checkemupload.py'
2025-06-02T09:00:10,421   adding 'wwpdb/utils/emdb/cif_emdb_translator/README.md'
2025-06-02T09:00:10,423   adding 'wwpdb/utils/emdb/cif_emdb_translator/__init__.py'
2025-06-02T09:00:10,471   adding 'wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py'
2025-06-02T09:00:10,588   adding 'wwpdb/utils/emdb/cif_emdb_translator/emdb.py'
2025-06-02T09:00:10,605   adding 'wwpdb/utils/emdb/cif_emdb_translator/simple_test.py'
2025-06-02T09:00:10,607   adding 'wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py'
2025-06-02T09:00:10,620   adding 'wwpdb/utils/emdb/data/emdb-v3.xsd'
2025-06-02T09:00:10,624   adding 'wwpdb_utils_emdb-1.13.dist-info/METADATA'
2025-06-02T09:00:10,626   adding 'wwpdb_utils_emdb-1.13.dist-info/WHEEL'
2025-06-02T09:00:10,627   adding 'wwpdb_utils_emdb-1.13.dist-info/entry_points.txt'
2025-06-02T09:00:10,629   adding 'wwpdb_utils_emdb-1.13.dist-info/top_level.txt'
2025-06-02T09:00:10,630   adding 'wwpdb_utils_emdb-1.13.dist-info/RECORD'
2025-06-02T09:00:10,635   removing build/bdist.linux-armv7l/wheel
2025-06-02T09:00:10,752   Building wheel for wwpdb-utils-emdb (setup.py): finished with status 'done'
2025-06-02T09:00:10,758   Created wheel for wwpdb-utils-emdb: filename=wwpdb_utils_emdb-1.13-py2.py3-none-any.whl size=283251 sha256=829f139150072fedbae33ed693de9cbcc2e7cb3d7e2c50805db366f0f14ca92c
2025-06-02T09:00:10,759   Stored in directory: /tmp/pip-ephem-wheel-cache-6j_ny1g3/wheels/12/cf/eb/16decf3930f8e894d554f27d7cc097fa26080ea8fdf0db5b10
2025-06-02T09:00:10,772 Successfully built wwpdb-utils-emdb
2025-06-02T09:00:10,784 Removed build tracker: '/tmp/pip-build-tracker-r08r8tb2'