2025-06-02T11:17:00,286 Created temporary directory: /tmp/pip-build-tracker-h3j2j3q7 2025-06-02T11:17:00,287 Initialized build tracking at /tmp/pip-build-tracker-h3j2j3q7 2025-06-02T11:17:00,288 Created build tracker: /tmp/pip-build-tracker-h3j2j3q7 2025-06-02T11:17:00,288 Entered build tracker: /tmp/pip-build-tracker-h3j2j3q7 2025-06-02T11:17:00,289 Created temporary directory: /tmp/pip-wheel-ah2i13lg 2025-06-02T11:17:00,293 Created temporary directory: /tmp/pip-ephem-wheel-cache-bjip9iyc 2025-06-02T11:17:00,343 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T11:17:00,345 2 location(s) to search for versions of biastools: 2025-06-02T11:17:00,345 * https://pypi.org/simple/biastools/ 2025-06-02T11:17:00,345 * https://www.piwheels.org/simple/biastools/ 2025-06-02T11:17:00,346 Fetching project page and analyzing links: https://pypi.org/simple/biastools/ 2025-06-02T11:17:00,346 Getting page https://pypi.org/simple/biastools/ 2025-06-02T11:17:00,348 Found index url https://pypi.org/simple/ 2025-06-02T11:17:00,575 Fetched page https://pypi.org/simple/biastools/ as application/vnd.pypi.simple.v1+json 2025-06-02T11:17:00,579 Found link https://files.pythonhosted.org/packages/ee/ad/e0e5634c614b7a51cef2553dabfeb2b72892a6d8bf1aa21988017e8ba46d/biastools-0.0.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.0.1 2025-06-02T11:17:00,580 Found link https://files.pythonhosted.org/packages/f1/55/806a81c0a71ee4d83e9c537d0e08895844198652e56e228edbed5f80e3d5/biastools-0.0.2.tar.gz (from https://pypi.org/simple/biastools/), version: 0.0.2 2025-06-02T11:17:00,582 Found link https://files.pythonhosted.org/packages/e2/ad/e961a9e4fb2b97369cc01b69c033037e5e165b72b126b259f088e806a455/biastools-0.1.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.1.1 2025-06-02T11:17:00,583 Found link https://files.pythonhosted.org/packages/88/cd/b730492b00c7148193941cf67c18828eb5805e319c4b7da8acf6bfb4db32/biastools-0.2.0.tar.gz (from https://pypi.org/simple/biastools/), version: 0.2.0 2025-06-02T11:17:00,584 Found link https://files.pythonhosted.org/packages/ec/3b/dc0f4bf7cc0708cd809af38d27d487675947de6ea715bb630a84264f4de0/biastools-0.2.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.2.1 2025-06-02T11:17:00,585 Found link https://files.pythonhosted.org/packages/1d/99/5565a57dcafca9de38547386ac4f19cb3d23d354555a291a3b19290241e1/biastools-0.3.0.tar.gz (from https://pypi.org/simple/biastools/), version: 0.3.0 2025-06-02T11:17:00,586 Found link https://files.pythonhosted.org/packages/df/aa/7c7fb016bc8d111b67a528ab8aa8b7c76ffbba0ea32d34f2deb10e5b7de8/biastools-0.3.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.3.1 2025-06-02T11:17:00,588 Fetching project page and analyzing links: https://www.piwheels.org/simple/biastools/ 2025-06-02T11:17:00,589 Getting page https://www.piwheels.org/simple/biastools/ 2025-06-02T11:17:00,591 Found index url https://www.piwheels.org/simple/ 2025-06-02T11:17:00,749 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T11:17:01,414 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T11:17:02,592 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T11:17:04,780 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T11:17:08,950 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T11:17:09,117 Could not fetch URL https://www.piwheels.org/simple/biastools/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biastools/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T11:17:09,119 Skipping link: not a file: https://www.piwheels.org/simple/biastools/ 2025-06-02T11:17:09,120 Skipping link: not a file: https://pypi.org/simple/biastools/ 2025-06-02T11:17:09,141 Given no hashes to check 1 links for project 'biastools': discarding no candidates 2025-06-02T11:17:09,143 Collecting biastools==0.3.0 2025-06-02T11:17:09,145 Created temporary directory: /tmp/pip-unpack-g_fe4ubr 2025-06-02T11:17:09,503 Downloading biastools-0.3.0.tar.gz (103 kB) 2025-06-02T11:17:09,705 Added biastools==0.3.0 from https://files.pythonhosted.org/packages/1d/99/5565a57dcafca9de38547386ac4f19cb3d23d354555a291a3b19290241e1/biastools-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-h3j2j3q7' 2025-06-02T11:17:09,708 Running setup.py (path:/tmp/pip-wheel-ah2i13lg/biastools_e5979e278f994f12b4ad5434795a393b/setup.py) egg_info for package biastools 2025-06-02T11:17:09,709 Created temporary directory: /tmp/pip-pip-egg-info-dsh6i_67 2025-06-02T11:17:09,710 Preparing metadata (setup.py): started 2025-06-02T11:17:09,711 Running command python setup.py egg_info 2025-06-02T11:17:10,559 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-06-02T11:17:10,560 !! 2025-06-02T11:17:10,561 ******************************************************************************** 2025-06-02T11:17:10,562 Usage of dash-separated 'description-file' will not be supported in future 2025-06-02T11:17:10,562 versions. Please use the underscore name 'description_file' instead. 2025-06-02T11:17:10,563 (Affected: biastools). 2025-06-02T11:17:10,564 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-06-02T11:17:10,564 or your builds will no longer be supported. 2025-06-02T11:17:10,565 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-06-02T11:17:10,566 ******************************************************************************** 2025-06-02T11:17:10,567 !! 2025-06-02T11:17:10,568 opt = self._enforce_underscore(opt, section) 2025-06-02T11:17:10,568 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T11:17:10,569 !! 2025-06-02T11:17:10,570 ******************************************************************************** 2025-06-02T11:17:10,571 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T11:17:10,572 License :: OSI Approved :: MIT License 2025-06-02T11:17:10,573 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T11:17:10,573 ******************************************************************************** 2025-06-02T11:17:10,574 !! 2025-06-02T11:17:10,575 self._finalize_license_expression() 2025-06-02T11:17:11,052 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T11:17:11,056 Source in /tmp/pip-wheel-ah2i13lg/biastools_e5979e278f994f12b4ad5434795a393b has version 0.3.0, which satisfies requirement biastools==0.3.0 from https://files.pythonhosted.org/packages/1d/99/5565a57dcafca9de38547386ac4f19cb3d23d354555a291a3b19290241e1/biastools-0.3.0.tar.gz 2025-06-02T11:17:11,057 Removed biastools==0.3.0 from https://files.pythonhosted.org/packages/1d/99/5565a57dcafca9de38547386ac4f19cb3d23d354555a291a3b19290241e1/biastools-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-h3j2j3q7' 2025-06-02T11:17:11,063 Created temporary directory: /tmp/pip-unpack-l0h5y3l_ 2025-06-02T11:17:11,064 Created temporary directory: /tmp/pip-unpack-1asezff6 2025-06-02T11:17:11,065 Building wheels for collected packages: biastools 2025-06-02T11:17:11,069 Created temporary directory: /tmp/pip-wheel-wabmrmwk 2025-06-02T11:17:11,070 DEPRECATION: Building 'biastools' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biastools'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T11:17:11,071 Building wheel for biastools (setup.py): started 2025-06-02T11:17:11,072 Destination directory: /tmp/pip-wheel-wabmrmwk 2025-06-02T11:17:11,073 Running command python setup.py bdist_wheel 2025-06-02T11:17:11,887 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-06-02T11:17:11,888 !! 2025-06-02T11:17:11,889 ******************************************************************************** 2025-06-02T11:17:11,890 Usage of dash-separated 'description-file' will not be supported in future 2025-06-02T11:17:11,890 versions. Please use the underscore name 'description_file' instead. 2025-06-02T11:17:11,891 (Affected: biastools). 2025-06-02T11:17:11,892 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-06-02T11:17:11,892 or your builds will no longer be supported. 2025-06-02T11:17:11,893 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-06-02T11:17:11,894 ******************************************************************************** 2025-06-02T11:17:11,895 !! 2025-06-02T11:17:11,895 opt = self._enforce_underscore(opt, section) 2025-06-02T11:17:11,896 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T11:17:11,896 !! 2025-06-02T11:17:11,898 ******************************************************************************** 2025-06-02T11:17:11,898 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T11:17:11,899 License :: OSI Approved :: MIT License 2025-06-02T11:17:11,900 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T11:17:11,901 ******************************************************************************** 2025-06-02T11:17:11,902 !! 2025-06-02T11:17:11,902 self._finalize_license_expression() 2025-06-02T11:17:12,287 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T11:17:12,288 !! 2025-06-02T11:17:12,289 ******************************************************************************** 2025-06-02T11:17:12,289 Please avoid running ``setup.py`` directly. 2025-06-02T11:17:12,290 Instead, use pypa/build, pypa/installer or other 2025-06-02T11:17:12,290 standards-based tools. 2025-06-02T11:17:12,291 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T11:17:12,292 or your builds will no longer be supported. 2025-06-02T11:17:12,293 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T11:17:12,294 ******************************************************************************** 2025-06-02T11:17:12,295 !! 2025-06-02T11:17:12,295 self.initialize_options() 2025-06-02T11:17:12,785 Building wheel for biastools (setup.py): finished with status 'done' 2025-06-02T11:17:12,789 Created wheel for biastools: filename=biastools-0.3.0-py3-none-any.whl size=131417 sha256=2c7d70b69f0edd3124392e93a78c2553b7c90bf8800f0b83a4bc5d09ca135880 2025-06-02T11:17:12,790 Stored in directory: /tmp/pip-ephem-wheel-cache-bjip9iyc/wheels/89/4d/0f/12f6c16ca74b499969e28118aec4b67580d9a95832d011f8cd 2025-06-02T11:17:12,801 Successfully built biastools 2025-06-02T11:17:12,811 Removed build tracker: '/tmp/pip-build-tracker-h3j2j3q7'