2025-06-02T02:42:58,235 Created temporary directory: /tmp/pip-build-tracker-g7bh6s0k 2025-06-02T02:42:58,237 Initialized build tracking at /tmp/pip-build-tracker-g7bh6s0k 2025-06-02T02:42:58,239 Created build tracker: /tmp/pip-build-tracker-g7bh6s0k 2025-06-02T02:42:58,240 Entered build tracker: /tmp/pip-build-tracker-g7bh6s0k 2025-06-02T02:42:58,242 Created temporary directory: /tmp/pip-wheel-lfqlk7_k 2025-06-02T02:42:58,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-nfqyydma 2025-06-02T02:42:58,432 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T02:42:58,447 2 location(s) to search for versions of biastools: 2025-06-02T02:42:58,447 * https://pypi.org/simple/biastools/ 2025-06-02T02:42:58,447 * https://www.piwheels.org/simple/biastools/ 2025-06-02T02:42:58,465 Fetching project page and analyzing links: https://pypi.org/simple/biastools/ 2025-06-02T02:42:58,467 Getting page https://pypi.org/simple/biastools/ 2025-06-02T02:42:58,470 Found index url https://pypi.org/simple/ 2025-06-02T02:42:58,905 Fetched page https://pypi.org/simple/biastools/ as application/vnd.pypi.simple.v1+json 2025-06-02T02:42:58,908 Found link https://files.pythonhosted.org/packages/ee/ad/e0e5634c614b7a51cef2553dabfeb2b72892a6d8bf1aa21988017e8ba46d/biastools-0.0.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.0.1 2025-06-02T02:42:58,909 Found link https://files.pythonhosted.org/packages/f1/55/806a81c0a71ee4d83e9c537d0e08895844198652e56e228edbed5f80e3d5/biastools-0.0.2.tar.gz (from https://pypi.org/simple/biastools/), version: 0.0.2 2025-06-02T02:42:58,910 Found link https://files.pythonhosted.org/packages/e2/ad/e961a9e4fb2b97369cc01b69c033037e5e165b72b126b259f088e806a455/biastools-0.1.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.1.1 2025-06-02T02:42:58,925 Found link https://files.pythonhosted.org/packages/88/cd/b730492b00c7148193941cf67c18828eb5805e319c4b7da8acf6bfb4db32/biastools-0.2.0.tar.gz (from https://pypi.org/simple/biastools/), version: 0.2.0 2025-06-02T02:42:58,927 Found link https://files.pythonhosted.org/packages/ec/3b/dc0f4bf7cc0708cd809af38d27d487675947de6ea715bb630a84264f4de0/biastools-0.2.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.2.1 2025-06-02T02:42:58,928 Found link https://files.pythonhosted.org/packages/1d/99/5565a57dcafca9de38547386ac4f19cb3d23d354555a291a3b19290241e1/biastools-0.3.0.tar.gz (from https://pypi.org/simple/biastools/), version: 0.3.0 2025-06-02T02:42:58,930 Found link https://files.pythonhosted.org/packages/df/aa/7c7fb016bc8d111b67a528ab8aa8b7c76ffbba0ea32d34f2deb10e5b7de8/biastools-0.3.1.tar.gz (from https://pypi.org/simple/biastools/), version: 0.3.1 2025-06-02T02:42:58,931 Fetching project page and analyzing links: https://www.piwheels.org/simple/biastools/ 2025-06-02T02:42:58,933 Getting page https://www.piwheels.org/simple/biastools/ 2025-06-02T02:42:58,935 Found index url https://www.piwheels.org/simple/ 2025-06-02T02:42:59,340 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T02:43:00,264 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T02:43:01,687 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T02:43:04,102 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T02:43:08,534 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biastools/ 2025-06-02T02:43:08,958 Could not fetch URL https://www.piwheels.org/simple/biastools/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biastools/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T02:43:08,975 Skipping link: not a file: https://www.piwheels.org/simple/biastools/ 2025-06-02T02:43:08,976 Skipping link: not a file: https://pypi.org/simple/biastools/ 2025-06-02T02:43:09,030 Given no hashes to check 1 links for project 'biastools': discarding no candidates 2025-06-02T02:43:09,047 Collecting biastools==0.3.1 2025-06-02T02:43:09,051 Created temporary directory: /tmp/pip-unpack-vbiw47f8 2025-06-02T02:43:09,449 Downloading biastools-0.3.1.tar.gz (103 kB) 2025-06-02T02:43:09,858 Added biastools==0.3.1 from https://files.pythonhosted.org/packages/df/aa/7c7fb016bc8d111b67a528ab8aa8b7c76ffbba0ea32d34f2deb10e5b7de8/biastools-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-g7bh6s0k' 2025-06-02T02:43:09,866 Running setup.py (path:/tmp/pip-wheel-lfqlk7_k/biastools_079c8a8c579449dfb5ec18aa23bcc8cc/setup.py) egg_info for package biastools 2025-06-02T02:43:09,868 Created temporary directory: /tmp/pip-pip-egg-info-k_vf2exs 2025-06-02T02:43:09,869 Preparing metadata (setup.py): started 2025-06-02T02:43:09,875 Running command python setup.py egg_info 2025-06-02T02:43:13,223 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-06-02T02:43:13,224 !! 2025-06-02T02:43:13,226 ******************************************************************************** 2025-06-02T02:43:13,227 Usage of dash-separated 'description-file' will not be supported in future 2025-06-02T02:43:13,228 versions. Please use the underscore name 'description_file' instead. 2025-06-02T02:43:13,229 (Affected: biastools). 2025-06-02T02:43:13,231 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-06-02T02:43:13,233 or your builds will no longer be supported. 2025-06-02T02:43:13,236 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-06-02T02:43:13,237 ******************************************************************************** 2025-06-02T02:43:13,240 !! 2025-06-02T02:43:13,241 opt = self._enforce_underscore(opt, section) 2025-06-02T02:43:13,242 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T02:43:13,243 !! 2025-06-02T02:43:13,245 ******************************************************************************** 2025-06-02T02:43:13,247 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T02:43:13,249 License :: OSI Approved :: MIT License 2025-06-02T02:43:13,254 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T02:43:13,255 ******************************************************************************** 2025-06-02T02:43:13,257 !! 2025-06-02T02:43:13,258 self._finalize_license_expression() 2025-06-02T02:43:14,279 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T02:43:14,287 Source in /tmp/pip-wheel-lfqlk7_k/biastools_079c8a8c579449dfb5ec18aa23bcc8cc has version 0.3.1, which satisfies requirement biastools==0.3.1 from https://files.pythonhosted.org/packages/df/aa/7c7fb016bc8d111b67a528ab8aa8b7c76ffbba0ea32d34f2deb10e5b7de8/biastools-0.3.1.tar.gz 2025-06-02T02:43:14,289 Removed biastools==0.3.1 from https://files.pythonhosted.org/packages/df/aa/7c7fb016bc8d111b67a528ab8aa8b7c76ffbba0ea32d34f2deb10e5b7de8/biastools-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-g7bh6s0k' 2025-06-02T02:43:14,325 Created temporary directory: /tmp/pip-unpack-isri7nfm 2025-06-02T02:43:14,327 Created temporary directory: /tmp/pip-unpack-j4fhfl1g 2025-06-02T02:43:14,329 Building wheels for collected packages: biastools 2025-06-02T02:43:14,338 Created temporary directory: /tmp/pip-wheel-79s_0wq0 2025-06-02T02:43:14,340 DEPRECATION: Building 'biastools' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biastools'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T02:43:14,342 Building wheel for biastools (setup.py): started 2025-06-02T02:43:14,355 Destination directory: /tmp/pip-wheel-79s_0wq0 2025-06-02T02:43:14,356 Running command python setup.py bdist_wheel 2025-06-02T02:43:17,228 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-06-02T02:43:17,228 !! 2025-06-02T02:43:17,230 ******************************************************************************** 2025-06-02T02:43:17,231 Usage of dash-separated 'description-file' will not be supported in future 2025-06-02T02:43:17,232 versions. Please use the underscore name 'description_file' instead. 2025-06-02T02:43:17,233 (Affected: biastools). 2025-06-02T02:43:17,235 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-06-02T02:43:17,236 or your builds will no longer be supported. 2025-06-02T02:43:17,239 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-06-02T02:43:17,240 ******************************************************************************** 2025-06-02T02:43:17,242 !! 2025-06-02T02:43:17,243 opt = self._enforce_underscore(opt, section) 2025-06-02T02:43:17,244 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T02:43:17,245 !! 2025-06-02T02:43:17,247 ******************************************************************************** 2025-06-02T02:43:17,248 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T02:43:17,250 License :: OSI Approved :: MIT License 2025-06-02T02:43:17,253 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T02:43:17,255 ******************************************************************************** 2025-06-02T02:43:17,257 !! 2025-06-02T02:43:17,258 self._finalize_license_expression() 2025-06-02T02:43:18,275 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T02:43:18,276 !! 2025-06-02T02:43:18,278 ******************************************************************************** 2025-06-02T02:43:18,279 Please avoid running ``setup.py`` directly. 2025-06-02T02:43:18,280 Instead, use pypa/build, pypa/installer or other 2025-06-02T02:43:18,282 standards-based tools. 2025-06-02T02:43:18,284 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T02:43:18,285 or your builds will no longer be supported. 2025-06-02T02:43:18,287 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T02:43:18,288 ******************************************************************************** 2025-06-02T02:43:18,290 !! 2025-06-02T02:43:18,291 self.initialize_options() 2025-06-02T02:43:19,361 Building wheel for biastools (setup.py): finished with status 'done' 2025-06-02T02:43:19,367 Created wheel for biastools: filename=biastools-0.3.1-py3-none-any.whl size=131459 sha256=57493f42c232e7c40103e60a4abfe7ddb65c4a3d99543fcea9dc0365ee1583ed 2025-06-02T02:43:19,369 Stored in directory: /tmp/pip-ephem-wheel-cache-nfqyydma/wheels/fa/e0/b2/75514fc011b315a4a4a2999fcd22ccdc04fa47d376fa5e6742 2025-06-02T02:43:19,405 Successfully built biastools 2025-06-02T02:43:19,417 Removed build tracker: '/tmp/pip-build-tracker-g7bh6s0k'