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https://files.pythonhosted.org/packages/54/ad/b1d223661c615f621ccf9d96d56e2cac4aff237ab7b67df89de87e97856a/biorefineries-2.24.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.24.0 2025-06-02T02:55:59,889 Found link https://files.pythonhosted.org/packages/cb/cd/2c6590a3707b128e2e18f88e5e8bafc11f66c696b13cd48a8d3904c1a7e9/biorefineries-2.25.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.25.0 2025-06-02T02:55:59,890 Found link https://files.pythonhosted.org/packages/0a/fb/ab19a7d509067bd1a3e6b5a3206353f76a20d0560a993bcc54f3834271d1/biorefineries-2.26.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.0 2025-06-02T02:55:59,891 Found link https://files.pythonhosted.org/packages/aa/11/6b1b4699e6f73e913ad9aba24dcc47b4bf71326f89560a9991da01d2ce2a/biorefineries-2.26.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.1 2025-06-02T02:55:59,892 Found link https://files.pythonhosted.org/packages/bd/27/da932b8ccd134a8cf91e3255a895f0e7b4ca5be730f4f647aaaf5707b129/biorefineries-2.26.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.2 2025-06-02T02:55:59,892 Found link https://files.pythonhosted.org/packages/a1/be/361e29090e4c191970a776e0825984963b7af2af3b3e187478dfa7fd1aeb/biorefineries-2.26.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.3 2025-06-02T02:55:59,893 Found link https://files.pythonhosted.org/packages/8c/93/3f84da15e7cae7dc3ea52b9aecbc04ec3c0a94a38a1dd37fb5ee19db62d5/biorefineries-2.27.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.27.0 2025-06-02T02:55:59,893 Found link https://files.pythonhosted.org/packages/fc/5b/dfbd1b69f7a3973cab60cb6b5956beea3b592f4dc52dfd5e22debaaa1eb4/biorefineries-2.28.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.28.0 2025-06-02T02:55:59,894 Found link https://files.pythonhosted.org/packages/a0/61/1dc078b2a9edb2aa6bbb811ef0284a2ce28ede5c47e4cdfa2a91e2af8602/biorefineries-2.29.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.29.0 2025-06-02T02:55:59,895 Found link https://files.pythonhosted.org/packages/43/d5/88b9e32b0aca0f72eeaa244a249a3506e535fac5aad149d9f07095eaf234/biorefineries-2.30.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.30.0 2025-06-02T02:55:59,895 Found link https://files.pythonhosted.org/packages/98/98/25db2013c0782c05b56be59643001bb6eb957774aab20bcde13c565dd393/biorefineries-2.31.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.31.0 2025-06-02T02:55:59,896 Found link https://files.pythonhosted.org/packages/e0/73/94787709c74a6024177a42f16af9934dec2d00a01fd8248e2c0783e5c4eb/biorefineries-2.32.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.0 2025-06-02T02:55:59,897 Found link https://files.pythonhosted.org/packages/00/b3/a660dd043e4da0555f31eb963f6db57871d72ea292e21ac069e07e08261a/biorefineries-2.32.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.1 2025-06-02T02:55:59,898 Found link https://files.pythonhosted.org/packages/f5/df/e2806eb3a5d1cc2fce1d47b9eee568041b7ba168e5f79a254e40bc31d567/biorefineries-2.32.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.2 2025-06-02T02:55:59,899 Found link https://files.pythonhosted.org/packages/1a/01/a509b9fa25b473c4946e5d0e473ac9e8487155fcde435faf732381059ed3/biorefineries-2.34.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.0 2025-06-02T02:55:59,899 Found link https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.1 2025-06-02T02:55:59,900 Found link https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.2 2025-06-02T02:55:59,901 Found link https://files.pythonhosted.org/packages/d0/18/21936150b0aaced289ca0ce66b8c1849aea0e6b697c37c30366c4544bc3c/biorefineries-2.34.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.3 2025-06-02T02:55:59,902 Found link https://files.pythonhosted.org/packages/eb/30/282559d3858fee72e9ac2f0243c9a6e2d6107c452cc0a2a81c800c08f0da/biorefineries-2.34.4.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.4 2025-06-02T02:55:59,903 Found link https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.5 2025-06-02T02:55:59,904 Found link https://files.pythonhosted.org/packages/de/e5/75d96878c9156b59227c4b9587466d58b879f91b48ae509ed2d44a604f58/biorefineries-2.34.6.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.6 2025-06-02T02:55:59,904 Found link https://files.pythonhosted.org/packages/dc/f0/7645088da65009a981a08e0d0c7e21342e4fa9e7a1ab0392ed25e88c63a7/biorefineries-2.34.7.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.7 2025-06-02T02:55:59,905 Found link https://files.pythonhosted.org/packages/24/6f/2fbd894ecce9381baa00fa7d057bbc742b1665d759149b70b6a41ca8b045/biorefineries-2.34.8.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.8 2025-06-02T02:55:59,906 Found link https://files.pythonhosted.org/packages/e0/fb/df23010230202a6caf5a966342497ab01795297ce3ee4212b15143e8c5ce/biorefineries-2.34.9.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.9 2025-06-02T02:55:59,906 Found link https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.10 2025-06-02T02:55:59,908 Fetching project page and analyzing links: https://www.piwheels.org/simple/biorefineries/ 2025-06-02T02:55:59,908 Getting page https://www.piwheels.org/simple/biorefineries/ 2025-06-02T02:55:59,910 Found index url https://www.piwheels.org/simple/ 2025-06-02T02:56:00,073 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-02T02:56:00,728 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-02T02:56:01,894 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-02T02:56:04,073 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-02T02:56:08,252 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-02T02:56:08,434 Could not fetch URL https://www.piwheels.org/simple/biorefineries/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biorefineries/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T02:56:08,436 Skipping link: not a file: https://www.piwheels.org/simple/biorefineries/ 2025-06-02T02:56:08,437 Skipping link: not a file: https://pypi.org/simple/biorefineries/ 2025-06-02T02:56:08,471 Given no hashes to check 1 links for project 'biorefineries': discarding no candidates 2025-06-02T02:56:08,474 Collecting biorefineries==2.34.2 2025-06-02T02:56:08,476 Created temporary directory: /tmp/pip-unpack-2d3a8zfn 2025-06-02T02:56:08,995 Downloading biorefineries-2.34.2.tar.gz (11.7 MB) 2025-06-02T02:56:12,662 Added biorefineries==2.34.2 from https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz to build tracker '/tmp/pip-build-tracker-bnu21ye2' 2025-06-02T02:56:12,664 Running setup.py (path:/tmp/pip-wheel-ls7rsjjs/biorefineries_8ea9b8c97ed045878be62a24d5a3fe34/setup.py) egg_info for package biorefineries 2025-06-02T02:56:12,665 Created temporary directory: /tmp/pip-pip-egg-info-20gqxhiy 2025-06-02T02:56:12,666 Preparing metadata (setup.py): started 2025-06-02T02:56:12,667 Running command python setup.py egg_info 2025-06-02T02:56:13,531 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T02:56:13,531 !! 2025-06-02T02:56:13,532 ******************************************************************************** 2025-06-02T02:56:13,533 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T02:56:13,534 License :: OSI Approved :: MIT License 2025-06-02T02:56:13,535 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T02:56:13,535 ******************************************************************************** 2025-06-02T02:56:13,536 !! 2025-06-02T02:56:13,537 self._finalize_license_expression() 2025-06-02T02:56:13,561 running egg_info 2025-06-02T02:56:13,591 creating /tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info 2025-06-02T02:56:13,592 writing /tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/PKG-INFO 2025-06-02T02:56:13,595 writing dependency_links to /tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/dependency_links.txt 2025-06-02T02:56:13,597 writing requirements to /tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/requires.txt 2025-06-02T02:56:13,598 writing top-level names to /tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/top_level.txt 2025-06-02T02:56:13,599 writing manifest file '/tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/SOURCES.txt' 2025-06-02T02:56:13,736 reading manifest file '/tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/SOURCES.txt' 2025-06-02T02:56:13,738 adding license file 'LICENSE.txt' 2025-06-02T02:56:13,748 writing manifest file '/tmp/pip-pip-egg-info-20gqxhiy/biorefineries.egg-info/SOURCES.txt' 2025-06-02T02:56:13,853 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T02:56:13,857 Source in /tmp/pip-wheel-ls7rsjjs/biorefineries_8ea9b8c97ed045878be62a24d5a3fe34 has version 2.34.2, which satisfies requirement biorefineries==2.34.2 from https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz 2025-06-02T02:56:13,858 Removed biorefineries==2.34.2 from https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz from build tracker '/tmp/pip-build-tracker-bnu21ye2' 2025-06-02T02:56:13,864 Created temporary directory: /tmp/pip-unpack-4z1x8spp 2025-06-02T02:56:13,865 Created temporary directory: /tmp/pip-unpack-l93elf4f 2025-06-02T02:56:13,866 Building wheels for collected packages: biorefineries 2025-06-02T02:56:13,870 Created temporary directory: /tmp/pip-wheel-nk26d6q5 2025-06-02T02:56:13,871 DEPRECATION: Building 'biorefineries' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biorefineries'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T02:56:13,872 Building wheel for biorefineries (setup.py): started 2025-06-02T02:56:13,873 Destination directory: /tmp/pip-wheel-nk26d6q5 2025-06-02T02:56:13,874 Running command python setup.py bdist_wheel 2025-06-02T02:56:14,953 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T02:56:14,953 !! 2025-06-02T02:56:14,954 ******************************************************************************** 2025-06-02T02:56:14,955 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T02:56:14,956 License :: OSI Approved :: MIT License 2025-06-02T02:56:14,957 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T02:56:14,957 ******************************************************************************** 2025-06-02T02:56:14,958 !! 2025-06-02T02:56:14,959 self._finalize_license_expression() 2025-06-02T02:56:14,959 running bdist_wheel 2025-06-02T02:56:15,094 running build 2025-06-02T02:56:15,094 running build_py 2025-06-02T02:56:15,125 creating build/lib/biorefineries 2025-06-02T02:56:15,128 copying biorefineries/__init__.py -> build/lib/biorefineries 2025-06-02T02:56:15,160 creating build/lib/biorefineries/cane 2025-06-02T02:56:15,161 copying biorefineries/cane/oil_extraction.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,164 copying biorefineries/cane/biorefinery.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,168 copying biorefineries/cane/feature_mockups.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,172 copying biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/lib/biorefineries/cane 2025-06-02T02:56:15,176 copying biorefineries/cane/README.md -> build/lib/biorefineries/cane 2025-06-02T02:56:15,179 copying biorefineries/cane/rename_soon.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,182 copying biorefineries/cane/chemicals.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,185 copying biorefineries/cane/__init__.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,188 copying biorefineries/cane/composition.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,192 copying biorefineries/cane/parse_configuration.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,195 copying biorefineries/cane/units.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,199 copying biorefineries/cane/uncertainty_plots.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,205 copying biorefineries/cane/contour_plots.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,210 copying biorefineries/cane/tables.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,213 copying biorefineries/cane/results.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,217 copying biorefineries/cane/evaluation.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,221 copying biorefineries/cane/process_settings.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,224 copying biorefineries/cane/streams.py -> build/lib/biorefineries/cane 2025-06-02T02:56:15,227 creating build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,228 copying biorefineries/cane/systems/sugar.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,232 copying biorefineries/cane/systems/lipid_extraction.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,235 copying biorefineries/cane/systems/__init__.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,238 copying biorefineries/cane/systems/biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,242 copying biorefineries/cane/systems/juicing.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,246 copying biorefineries/cane/systems/bagasse.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,249 copying biorefineries/cane/systems/lipidcane.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,253 copying biorefineries/cane/systems/cellulosic_biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,256 copying biorefineries/cane/systems/biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,260 copying biorefineries/cane/systems/pretreatment.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,263 copying biorefineries/cane/systems/fermentation.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,266 copying biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-02T02:56:15,270 creating build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,271 copying biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,275 copying biorefineries/cane/systems/oilcane/__init__.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,278 copying biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,281 copying biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,284 copying biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-02T02:56:15,287 creating build/lib/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:15,289 copying biorefineries/cane/systems/sugarcane/ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:15,292 copying biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:15,296 copying biorefineries/cane/systems/sugarcane/__init__.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:15,298 copying biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:15,301 creating build/lib/biorefineries/milk 2025-06-02T02:56:15,303 copying biorefineries/milk/tests.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,306 copying biorefineries/milk/biorefinery.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,310 copying biorefineries/milk/README.md -> build/lib/biorefineries/milk 2025-06-02T02:56:15,314 copying biorefineries/milk/chemicals.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,318 copying biorefineries/milk/__init__.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,321 copying biorefineries/milk/units.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,324 copying biorefineries/milk/data.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,326 copying biorefineries/milk/systems.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,330 copying biorefineries/milk/plots.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,333 copying biorefineries/milk/process_settings.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,336 copying biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/lib/biorefineries/milk 2025-06-02T02:56:15,372 copying biorefineries/milk/uncertainty.py -> build/lib/biorefineries/milk 2025-06-02T02:56:15,375 creating build/lib/biorefineries/milk/images 2025-06-02T02:56:15,376 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,388 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,393 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,404 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,409 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,418 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-02T02:56:15,424 creating build/lib/biorefineries/milk/results 2025-06-02T02:56:15,425 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-02T02:56:15,429 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/lib/biorefineries/milk/results 2025-06-02T02:56:15,432 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-02T02:56:15,436 creating build/lib/biorefineries/cane/data 2025-06-02T02:56:15,437 copying biorefineries/cane/data/RIN_prices_2022.csv -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,447 copying biorefineries/cane/data/cane_composition_data_full.xlsx -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,451 copying biorefineries/cane/data/RIN_prices_2023.csv -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,457 copying biorefineries/cane/data/cane_composition_data.xlsx -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,460 copying biorefineries/cane/data/lca_characterization_factors.py -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,463 copying biorefineries/cane/data/microbial_oil_baseline.py -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,465 copying biorefineries/cane/data/price_distributions_2022.py -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,468 copying biorefineries/cane/data/price_distributions_2023.py -> build/lib/biorefineries/cane/data 2025-06-02T02:56:15,471 creating build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,472 copying biorefineries/cellulosic/biorefinery.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,476 copying biorefineries/cellulosic/chemicals.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,479 copying biorefineries/cellulosic/__init__.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,481 copying biorefineries/cellulosic/units.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,485 copying biorefineries/cellulosic/process_settings.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,488 copying biorefineries/cellulosic/streams.py -> build/lib/biorefineries/cellulosic 2025-06-02T02:56:15,490 creating build/lib/biorefineries/cellulosic/systems 2025-06-02T02:56:15,492 copying biorefineries/cellulosic/systems/__init__.py -> build/lib/biorefineries/cellulosic/systems 2025-06-02T02:56:15,494 copying biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/lib/biorefineries/cellulosic/systems 2025-06-02T02:56:15,498 creating build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,499 copying biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,502 copying biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,505 copying biorefineries/cellulosic/systems/fermentation/__init__.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,508 copying biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,511 copying biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,728 copying biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:15,734 creating build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,736 copying biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,740 copying biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,744 copying biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,748 copying biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,751 copying biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:15,754 creating build/lib/biorefineries/ethanol 2025-06-02T02:56:15,755 copying biorefineries/ethanol/__init__.py -> build/lib/biorefineries/ethanol 2025-06-02T02:56:15,757 copying biorefineries/ethanol/systems.py -> build/lib/biorefineries/ethanol 2025-06-02T02:56:15,760 copying biorefineries/ethanol/streams.py -> build/lib/biorefineries/ethanol 2025-06-02T02:56:15,763 creating build/lib/biorefineries/biodiesel 2025-06-02T02:56:15,764 copying biorefineries/biodiesel/__init__.py -> build/lib/biorefineries/biodiesel 2025-06-02T02:56:15,766 copying biorefineries/biodiesel/systems.py -> build/lib/biorefineries/biodiesel 2025-06-02T02:56:15,770 copying biorefineries/biodiesel/streams.py -> build/lib/biorefineries/biodiesel 2025-06-02T02:56:15,772 creating build/lib/biorefineries/biodiesel/units 2025-06-02T02:56:15,773 copying biorefineries/biodiesel/units/skimming_tank.py -> build/lib/biorefineries/biodiesel/units 2025-06-02T02:56:15,776 copying biorefineries/biodiesel/units/transesterification.py -> build/lib/biorefineries/biodiesel/units 2025-06-02T02:56:15,779 copying biorefineries/biodiesel/units/__init__.py -> build/lib/biorefineries/biodiesel/units 2025-06-02T02:56:15,781 copying biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/lib/biorefineries/biodiesel/units 2025-06-02T02:56:15,784 creating build/lib/biorefineries/tea 2025-06-02T02:56:15,785 copying biorefineries/tea/__init__.py -> build/lib/biorefineries/tea 2025-06-02T02:56:15,788 copying biorefineries/tea/cellulosic_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-02T02:56:15,791 copying biorefineries/tea/conventional_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-02T02:56:15,793 creating build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,795 copying biorefineries/lipidcane/_system.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,797 copying biorefineries/lipidcane/_tea.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,800 copying biorefineries/lipidcane/__init__.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,802 copying biorefineries/lipidcane/_webapp_model.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,806 copying biorefineries/lipidcane/_chemicals.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,808 copying biorefineries/lipidcane/_process_settings.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,811 copying biorefineries/lipidcane/model.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,814 copying biorefineries/lipidcane/README.rst -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,816 copying biorefineries/lipidcane/_feedstock_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,819 copying biorefineries/lipidcane/sankey_plot.ipynb -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,879 copying biorefineries/lipidcane/_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,882 copying biorefineries/lipidcane/_plot_spearman.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,884 copying biorefineries/lipidcane/_plot_uncertainty.py -> build/lib/biorefineries/lipidcane 2025-06-02T02:56:15,887 creating build/lib/biorefineries/oilcane 2025-06-02T02:56:15,888 copying biorefineries/oilcane/_line_plots.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,890 copying biorefineries/oilcane/utils.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,893 copying biorefineries/oilcane/_parse_configuration.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,895 copying biorefineries/oilcane/sankey_energy.ipynb -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,960 copying biorefineries/oilcane/lca_benchmarks.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,962 copying biorefineries/oilcane/webapp_model.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,964 copying biorefineries/oilcane/README.md -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,966 copying biorefineries/oilcane/_evaluation.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,969 copying biorefineries/oilcane/_tea.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,971 copying biorefineries/oilcane/__init__.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,973 copying biorefineries/oilcane/_tables.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,975 copying biorefineries/oilcane/_chemicals.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,977 copying biorefineries/oilcane/units.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,979 copying biorefineries/oilcane/systems.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,982 copying biorefineries/oilcane/_load_data.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,985 copying biorefineries/oilcane/_contour_plots.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,988 copying biorefineries/oilcane/_feature_mockups.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,991 copying biorefineries/oilcane/sankey_plot.ipynb -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,995 copying biorefineries/oilcane/_uncertainty_plots.py -> build/lib/biorefineries/oilcane 2025-06-02T02:56:15,999 creating build/lib/biorefineries/cornstover 2025-06-02T02:56:16,000 copying biorefineries/cornstover/_plot_single_point.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,003 copying biorefineries/cornstover/webapp_model.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,006 copying biorefineries/cornstover/_tea.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,008 copying biorefineries/cornstover/__init__.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,011 copying biorefineries/cornstover/_chemicals.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,013 copying biorefineries/cornstover/_process_settings.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,016 copying biorefineries/cornstover/units.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,018 copying biorefineries/cornstover/_switchgrass.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,020 copying biorefineries/cornstover/systems.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,023 copying biorefineries/cornstover/model.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,025 copying biorefineries/cornstover/README.rst -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,028 copying biorefineries/cornstover/_legacy_code.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,030 copying biorefineries/cornstover/_sankey.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,033 copying biorefineries/cornstover/_plot_bars.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,035 copying biorefineries/cornstover/_analysis.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,038 copying biorefineries/cornstover/_plot_spearman.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,040 copying biorefineries/cornstover/_plot_uncertainty.py -> build/lib/biorefineries/cornstover 2025-06-02T02:56:16,043 creating build/lib/biorefineries/corn 2025-06-02T02:56:16,045 copying biorefineries/corn/utils.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,047 copying biorefineries/corn/biorefinery.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,050 copying biorefineries/corn/README.md -> build/lib/biorefineries/corn 2025-06-02T02:56:16,053 copying biorefineries/corn/chemicals.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,055 copying biorefineries/corn/__init__.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,058 copying biorefineries/corn/units.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,061 copying biorefineries/corn/systems.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,064 copying biorefineries/corn/tea.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,068 copying biorefineries/corn/process_settings.py -> build/lib/biorefineries/corn 2025-06-02T02:56:16,070 creating build/lib/biorefineries/lactic 2025-06-02T02:56:16,071 copying biorefineries/lactic/utils.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,074 copying biorefineries/lactic/_profile.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,077 copying biorefineries/lactic/_tea.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,080 copying biorefineries/lactic/__init__.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,083 copying biorefineries/lactic/_chemicals.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,086 copying biorefineries/lactic/_process_settings.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,090 copying biorefineries/lactic/_units.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,094 copying biorefineries/lactic/models.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,097 copying biorefineries/lactic/systems.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,101 copying biorefineries/lactic/README.rst -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,104 copying biorefineries/lactic/_processes.py -> build/lib/biorefineries/lactic 2025-06-02T02:56:16,108 creating build/lib/biorefineries/lactic/analyses 2025-06-02T02:56:16,109 copying biorefineries/lactic/analyses/1_uncertainties.py -> build/lib/biorefineries/lactic/analyses 2025-06-02T02:56:16,112 copying biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/lib/biorefineries/lactic/analyses 2025-06-02T02:56:16,116 copying biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/lib/biorefineries/lactic/analyses 2025-06-02T02:56:16,119 creating build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,121 copying biorefineries/sugarcane/_tea.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,123 copying biorefineries/sugarcane/__init__.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,126 copying biorefineries/sugarcane/_chemicals.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,129 copying biorefineries/sugarcane/_process_settings.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,131 copying biorefineries/sugarcane/systems.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,134 copying biorefineries/sugarcane/model.py -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,137 copying biorefineries/sugarcane/README.rst -> build/lib/biorefineries/sugarcane 2025-06-02T02:56:16,139 creating build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,140 copying biorefineries/fattyalcohols/utils.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,143 copying biorefineries/fattyalcohols/_system.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,146 copying biorefineries/fattyalcohols/streams.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,148 copying biorefineries/fattyalcohols/chemicals.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,151 copying biorefineries/fattyalcohols/_tea.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,153 copying biorefineries/fattyalcohols/__init__.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,155 copying biorefineries/fattyalcohols/_chemicals.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,158 copying biorefineries/fattyalcohols/_process_specifications.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,160 copying biorefineries/fattyalcohols/README.rst -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,163 copying biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/lib/biorefineries/fattyalcohols 2025-06-02T02:56:16,166 creating build/lib/biorefineries/fattyalcohols/units 2025-06-02T02:56:16,167 copying biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-02T02:56:16,169 copying biorefineries/fattyalcohols/units/__init__.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-02T02:56:16,172 copying biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-02T02:56:16,174 creating build/lib/biorefineries/LAOs 2025-06-02T02:56:16,175 copying biorefineries/LAOs/utils.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,178 copying biorefineries/LAOs/_system.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,180 copying biorefineries/LAOs/streams.yaml -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,183 copying biorefineries/LAOs/chemicals.yaml -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,185 copying biorefineries/LAOs/_tea.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,187 copying biorefineries/LAOs/__init__.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,190 copying biorefineries/LAOs/_chemicals.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,192 copying biorefineries/LAOs/_process_specifications.py -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,195 copying biorefineries/LAOs/README.rst -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,198 copying biorefineries/LAOs/analysis.ipynb -> build/lib/biorefineries/LAOs 2025-06-02T02:56:16,311 creating build/lib/biorefineries/LAOs/units 2025-06-02T02:56:16,312 copying biorefineries/LAOs/units/surge_tank.py -> build/lib/biorefineries/LAOs/units 2025-06-02T02:56:16,314 copying biorefineries/LAOs/units/__init__.py -> build/lib/biorefineries/LAOs/units 2025-06-02T02:56:16,316 copying biorefineries/LAOs/units/nitrogen_generation_package.py -> build/lib/biorefineries/LAOs/units 2025-06-02T02:56:16,319 copying biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/lib/biorefineries/LAOs/units 2025-06-02T02:56:16,321 creating build/lib/biorefineries/abm 2025-06-02T02:56:16,322 copying biorefineries/abm/abm_yield_example.py -> build/lib/biorefineries/abm 2025-06-02T02:56:16,324 copying biorefineries/abm/cornstover.py -> build/lib/biorefineries/abm 2025-06-02T02:56:16,327 copying biorefineries/abm/corn.py -> build/lib/biorefineries/abm 2025-06-02T02:56:16,330 copying biorefineries/abm/breakdown.py -> build/lib/biorefineries/abm 2025-06-02T02:56:16,332 creating build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,334 copying biorefineries/gas_fermentation/tests.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,336 copying biorefineries/gas_fermentation/biorefinery.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,340 copying biorefineries/gas_fermentation/README.md -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,343 copying biorefineries/gas_fermentation/chemicals.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,345 copying biorefineries/gas_fermentation/__init__.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,349 copying biorefineries/gas_fermentation/units.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,351 copying biorefineries/gas_fermentation/tables.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,354 copying biorefineries/gas_fermentation/data.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,357 copying biorefineries/gas_fermentation/systems.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,360 copying biorefineries/gas_fermentation/plots.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,364 copying biorefineries/gas_fermentation/process_settings.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,366 copying biorefineries/gas_fermentation/uncertainty.py -> build/lib/biorefineries/gas_fermentation 2025-06-02T02:56:16,369 creating build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,370 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,386 copying biorefineries/gas_fermentation/images/spearman.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,398 copying biorefineries/gas_fermentation/images/spearman.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,403 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,408 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,424 copying biorefineries/gas_fermentation/images/uncertainty.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,429 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,442 copying biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,488 copying biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,556 copying biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,563 copying biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,613 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,629 copying biorefineries/gas_fermentation/images/sensitivity.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,633 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,637 copying biorefineries/gas_fermentation/images/configuration_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,650 copying biorefineries/gas_fermentation/images/impact.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,654 copying biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,664 copying biorefineries/gas_fermentation/images/H2_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,668 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,677 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,684 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,694 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,705 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,717 copying biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,726 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,731 copying biorefineries/gas_fermentation/images/kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,832 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,885 copying biorefineries/gas_fermentation/images/preliminary_contour.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,891 copying biorefineries/gas_fermentation/images/kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,903 copying biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,910 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,933 copying biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,939 copying biorefineries/gas_fermentation/images/configuration_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,956 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,971 copying biorefineries/gas_fermentation/images/sensitivity.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,976 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,987 copying biorefineries/gas_fermentation/images/impact.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-02T02:56:16,992 creating build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:16,993 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,001 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000 -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,007 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,022 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,026 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000 -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,036 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-02T02:56:17,039 creating build/lib/biorefineries/gas_fermentation/notebooks 2025-06-02T02:56:17,041 copying biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/lib/biorefineries/gas_fermentation/notebooks 2025-06-02T02:56:17,044 creating build/lib/biorefineries/tests 2025-06-02T02:56:17,046 copying biorefineries/tests/test_biorefineries.py -> build/lib/biorefineries/tests 2025-06-02T02:56:17,051 copying biorefineries/tests/run_readmes.py -> build/lib/biorefineries/tests 2025-06-02T02:56:17,054 copying biorefineries/tests/__init__.py -> build/lib/biorefineries/tests 2025-06-02T02:56:17,091 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T02:56:17,092 !! 2025-06-02T02:56:17,093 ******************************************************************************** 2025-06-02T02:56:17,094 Please avoid running ``setup.py`` directly. 2025-06-02T02:56:17,094 Instead, use pypa/build, pypa/installer or other 2025-06-02T02:56:17,095 standards-based tools. 2025-06-02T02:56:17,096 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T02:56:17,097 or your builds will no longer be supported. 2025-06-02T02:56:17,097 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T02:56:17,098 ******************************************************************************** 2025-06-02T02:56:17,099 !! 2025-06-02T02:56:17,099 self.initialize_options() 2025-06-02T02:56:17,120 installing to build/bdist.linux-armv7l/wheel 2025-06-02T02:56:17,121 running install 2025-06-02T02:56:17,146 running install_lib 2025-06-02T02:56:17,173 creating build/bdist.linux-armv7l/wheel 2025-06-02T02:56:17,175 creating build/bdist.linux-armv7l/wheel/biorefineries 2025-06-02T02:56:17,177 creating build/bdist.linux-armv7l/wheel/biorefineries/tea 2025-06-02T02:56:17,178 copying build/lib/biorefineries/tea/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-02T02:56:17,180 copying build/lib/biorefineries/tea/cellulosic_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-02T02:56:17,182 copying build/lib/biorefineries/tea/conventional_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-02T02:56:17,185 creating build/bdist.linux-armv7l/wheel/biorefineries/abm 2025-06-02T02:56:17,186 copying build/lib/biorefineries/abm/abm_yield_example.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-02T02:56:17,188 copying build/lib/biorefineries/abm/cornstover.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-02T02:56:17,190 copying build/lib/biorefineries/abm/corn.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-02T02:56:17,192 copying build/lib/biorefineries/abm/breakdown.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-02T02:56:17,195 creating build/bdist.linux-armv7l/wheel/biorefineries/corn 2025-06-02T02:56:17,196 copying build/lib/biorefineries/corn/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,198 copying build/lib/biorefineries/corn/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,201 copying build/lib/biorefineries/corn/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,206 copying build/lib/biorefineries/corn/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,209 copying build/lib/biorefineries/corn/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,213 copying build/lib/biorefineries/corn/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,218 copying build/lib/biorefineries/corn/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,222 copying build/lib/biorefineries/corn/tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,224 copying build/lib/biorefineries/corn/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-02T02:56:17,228 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel 2025-06-02T02:56:17,229 copying build/lib/biorefineries/biodiesel/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-02T02:56:17,232 copying build/lib/biorefineries/biodiesel/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-02T02:56:17,234 copying build/lib/biorefineries/biodiesel/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-02T02:56:17,237 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel/units 2025-06-02T02:56:17,238 copying build/lib/biorefineries/biodiesel/units/skimming_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-02T02:56:17,241 copying build/lib/biorefineries/biodiesel/units/transesterification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-02T02:56:17,245 copying build/lib/biorefineries/biodiesel/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-02T02:56:17,247 copying build/lib/biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-02T02:56:17,250 creating build/bdist.linux-armv7l/wheel/biorefineries/ethanol 2025-06-02T02:56:17,251 copying build/lib/biorefineries/ethanol/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-02T02:56:17,253 copying build/lib/biorefineries/ethanol/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-02T02:56:17,256 copying build/lib/biorefineries/ethanol/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-02T02:56:17,259 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic 2025-06-02T02:56:17,260 copying build/lib/biorefineries/lactic/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,262 copying build/lib/biorefineries/lactic/_profile.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,265 copying build/lib/biorefineries/lactic/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,267 copying build/lib/biorefineries/lactic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,269 copying build/lib/biorefineries/lactic/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,272 copying build/lib/biorefineries/lactic/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,274 copying build/lib/biorefineries/lactic/_units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,280 copying build/lib/biorefineries/lactic/models.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,284 copying build/lib/biorefineries/lactic/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,289 copying build/lib/biorefineries/lactic/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,294 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic/analyses 2025-06-02T02:56:17,297 copying build/lib/biorefineries/lactic/analyses/1_uncertainties.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-02T02:56:17,302 copying build/lib/biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-02T02:56:17,305 copying build/lib/biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-02T02:56:17,308 copying build/lib/biorefineries/lactic/_processes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-02T02:56:17,315 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs 2025-06-02T02:56:17,317 copying build/lib/biorefineries/LAOs/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,320 copying build/lib/biorefineries/LAOs/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,323 copying build/lib/biorefineries/LAOs/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,325 copying build/lib/biorefineries/LAOs/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,327 copying build/lib/biorefineries/LAOs/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,330 copying build/lib/biorefineries/LAOs/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,332 copying build/lib/biorefineries/LAOs/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,335 copying build/lib/biorefineries/LAOs/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,338 copying build/lib/biorefineries/LAOs/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,344 copying build/lib/biorefineries/LAOs/analysis.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-02T02:56:17,485 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs/units 2025-06-02T02:56:17,486 copying build/lib/biorefineries/LAOs/units/surge_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-02T02:56:17,487 copying build/lib/biorefineries/LAOs/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-02T02:56:17,489 copying build/lib/biorefineries/LAOs/units/nitrogen_generation_package.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-02T02:56:17,491 copying build/lib/biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-02T02:56:17,493 creating build/bdist.linux-armv7l/wheel/biorefineries/sugarcane 2025-06-02T02:56:17,494 copying build/lib/biorefineries/sugarcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,496 copying build/lib/biorefineries/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,498 copying build/lib/biorefineries/sugarcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,499 copying build/lib/biorefineries/sugarcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,501 copying build/lib/biorefineries/sugarcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,504 copying build/lib/biorefineries/sugarcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,506 copying build/lib/biorefineries/sugarcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-02T02:56:17,508 copying build/lib/biorefineries/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries 2025-06-02T02:56:17,511 creating build/bdist.linux-armv7l/wheel/biorefineries/cornstover 2025-06-02T02:56:17,512 copying build/lib/biorefineries/cornstover/_plot_single_point.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,515 copying build/lib/biorefineries/cornstover/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,518 copying build/lib/biorefineries/cornstover/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,520 copying build/lib/biorefineries/cornstover/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,522 copying build/lib/biorefineries/cornstover/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,524 copying build/lib/biorefineries/cornstover/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,526 copying build/lib/biorefineries/cornstover/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,528 copying build/lib/biorefineries/cornstover/_switchgrass.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,530 copying build/lib/biorefineries/cornstover/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,532 copying build/lib/biorefineries/cornstover/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,534 copying build/lib/biorefineries/cornstover/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,536 copying build/lib/biorefineries/cornstover/_legacy_code.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,539 copying build/lib/biorefineries/cornstover/_sankey.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,541 copying build/lib/biorefineries/cornstover/_plot_bars.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,544 copying build/lib/biorefineries/cornstover/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,546 copying build/lib/biorefineries/cornstover/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,548 copying build/lib/biorefineries/cornstover/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-02T02:56:17,551 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic 2025-06-02T02:56:17,553 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems 2025-06-02T02:56:17,554 copying build/lib/biorefineries/cellulosic/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-02T02:56:17,557 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,558 copying build/lib/biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,561 copying build/lib/biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,563 copying build/lib/biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,565 copying build/lib/biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,567 copying build/lib/biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-02T02:56:17,569 copying build/lib/biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-02T02:56:17,572 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,574 copying build/lib/biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,576 copying build/lib/biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,579 copying build/lib/biorefineries/cellulosic/systems/fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,581 copying build/lib/biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,583 copying build/lib/biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,585 copying build/lib/biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-02T02:56:17,588 copying build/lib/biorefineries/cellulosic/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,590 copying build/lib/biorefineries/cellulosic/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,593 copying build/lib/biorefineries/cellulosic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,595 copying build/lib/biorefineries/cellulosic/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,598 copying build/lib/biorefineries/cellulosic/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,600 copying build/lib/biorefineries/cellulosic/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-02T02:56:17,603 creating build/bdist.linux-armv7l/wheel/biorefineries/oilcane 2025-06-02T02:56:17,604 copying build/lib/biorefineries/oilcane/_line_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,606 copying build/lib/biorefineries/oilcane/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,609 copying build/lib/biorefineries/oilcane/_parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,611 copying build/lib/biorefineries/oilcane/sankey_energy.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,715 copying build/lib/biorefineries/oilcane/lca_benchmarks.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,717 copying build/lib/biorefineries/oilcane/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,719 copying build/lib/biorefineries/oilcane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,721 copying build/lib/biorefineries/oilcane/_evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,724 copying build/lib/biorefineries/oilcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,725 copying build/lib/biorefineries/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,727 copying build/lib/biorefineries/oilcane/_tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,730 copying build/lib/biorefineries/oilcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,732 copying build/lib/biorefineries/oilcane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,734 copying build/lib/biorefineries/oilcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,736 copying build/lib/biorefineries/oilcane/_load_data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,739 copying build/lib/biorefineries/oilcane/_contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,741 copying build/lib/biorefineries/oilcane/_feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,743 copying build/lib/biorefineries/oilcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,747 copying build/lib/biorefineries/oilcane/_uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-02T02:56:17,754 creating build/bdist.linux-armv7l/wheel/biorefineries/cane 2025-06-02T02:56:17,755 copying build/lib/biorefineries/cane/oil_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,758 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems 2025-06-02T02:56:17,759 copying build/lib/biorefineries/cane/systems/sugar.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,762 copying build/lib/biorefineries/cane/systems/lipid_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,765 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/sugarcane 2025-06-02T02:56:17,766 copying build/lib/biorefineries/cane/systems/sugarcane/ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-02T02:56:17,769 copying build/lib/biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-02T02:56:17,772 copying build/lib/biorefineries/cane/systems/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-02T02:56:17,774 copying build/lib/biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-02T02:56:17,776 copying build/lib/biorefineries/cane/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,778 copying build/lib/biorefineries/cane/systems/biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,782 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,783 copying build/lib/biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,786 copying build/lib/biorefineries/cane/systems/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,788 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,790 copying build/lib/biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,792 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-02T02:56:17,795 copying build/lib/biorefineries/cane/systems/juicing.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,797 copying build/lib/biorefineries/cane/systems/bagasse.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,799 copying build/lib/biorefineries/cane/systems/lipidcane.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,802 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,804 copying build/lib/biorefineries/cane/systems/biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,807 copying build/lib/biorefineries/cane/systems/pretreatment.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,809 copying build/lib/biorefineries/cane/systems/fermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,813 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-02T02:56:17,816 copying build/lib/biorefineries/cane/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,820 copying build/lib/biorefineries/cane/feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,823 copying build/lib/biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,827 copying build/lib/biorefineries/cane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,830 copying build/lib/biorefineries/cane/rename_soon.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,831 copying build/lib/biorefineries/cane/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,834 copying build/lib/biorefineries/cane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,836 copying build/lib/biorefineries/cane/composition.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,839 copying build/lib/biorefineries/cane/parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,841 copying build/lib/biorefineries/cane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,844 copying build/lib/biorefineries/cane/uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,849 copying build/lib/biorefineries/cane/contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,852 copying build/lib/biorefineries/cane/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,854 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/data 2025-06-02T02:56:17,856 copying build/lib/biorefineries/cane/data/RIN_prices_2022.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,863 copying build/lib/biorefineries/cane/data/cane_composition_data_full.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,866 copying build/lib/biorefineries/cane/data/RIN_prices_2023.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,879 copying build/lib/biorefineries/cane/data/cane_composition_data.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,882 copying build/lib/biorefineries/cane/data/lca_characterization_factors.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,884 copying build/lib/biorefineries/cane/data/microbial_oil_baseline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,886 copying build/lib/biorefineries/cane/data/price_distributions_2022.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,889 copying build/lib/biorefineries/cane/data/price_distributions_2023.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-02T02:56:17,892 copying build/lib/biorefineries/cane/results.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,895 copying build/lib/biorefineries/cane/evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,899 copying build/lib/biorefineries/cane/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,901 copying build/lib/biorefineries/cane/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-02T02:56:17,905 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols 2025-06-02T02:56:17,906 copying build/lib/biorefineries/fattyalcohols/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,909 copying build/lib/biorefineries/fattyalcohols/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,912 copying build/lib/biorefineries/fattyalcohols/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,914 copying build/lib/biorefineries/fattyalcohols/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,916 copying build/lib/biorefineries/fattyalcohols/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,918 copying build/lib/biorefineries/fattyalcohols/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,920 copying build/lib/biorefineries/fattyalcohols/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,922 copying build/lib/biorefineries/fattyalcohols/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,925 copying build/lib/biorefineries/fattyalcohols/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,927 copying build/lib/biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-02T02:56:17,930 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols/units 2025-06-02T02:56:17,932 copying build/lib/biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-02T02:56:17,934 copying build/lib/biorefineries/fattyalcohols/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-02T02:56:17,937 copying build/lib/biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-02T02:56:17,940 creating build/bdist.linux-armv7l/wheel/biorefineries/milk 2025-06-02T02:56:17,941 copying build/lib/biorefineries/milk/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,944 copying build/lib/biorefineries/milk/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,947 copying build/lib/biorefineries/milk/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,949 copying build/lib/biorefineries/milk/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,952 copying build/lib/biorefineries/milk/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,955 copying build/lib/biorefineries/milk/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,957 copying build/lib/biorefineries/milk/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,959 copying build/lib/biorefineries/milk/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,962 copying build/lib/biorefineries/milk/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,966 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/results 2025-06-02T02:56:17,968 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-02T02:56:17,971 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-02T02:56:17,973 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-02T02:56:17,976 copying build/lib/biorefineries/milk/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:17,979 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/images 2025-06-02T02:56:17,980 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:17,991 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:17,995 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:18,003 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:18,007 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:18,018 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-02T02:56:18,024 copying build/lib/biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:18,056 copying build/lib/biorefineries/milk/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-02T02:56:18,060 creating build/bdist.linux-armv7l/wheel/biorefineries/lipidcane 2025-06-02T02:56:18,061 copying build/lib/biorefineries/lipidcane/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,063 copying build/lib/biorefineries/lipidcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,066 copying build/lib/biorefineries/lipidcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,068 copying build/lib/biorefineries/lipidcane/_webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,070 copying build/lib/biorefineries/lipidcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,072 copying build/lib/biorefineries/lipidcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,074 copying build/lib/biorefineries/lipidcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,077 copying build/lib/biorefineries/lipidcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,080 copying build/lib/biorefineries/lipidcane/_feedstock_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,082 copying build/lib/biorefineries/lipidcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,142 copying build/lib/biorefineries/lipidcane/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,144 copying build/lib/biorefineries/lipidcane/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,147 copying build/lib/biorefineries/lipidcane/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-02T02:56:18,150 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation 2025-06-02T02:56:18,151 copying build/lib/biorefineries/gas_fermentation/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,153 copying build/lib/biorefineries/gas_fermentation/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,156 copying build/lib/biorefineries/gas_fermentation/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,158 copying build/lib/biorefineries/gas_fermentation/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,161 copying build/lib/biorefineries/gas_fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,163 copying build/lib/biorefineries/gas_fermentation/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,166 copying build/lib/biorefineries/gas_fermentation/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,168 copying build/lib/biorefineries/gas_fermentation/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,171 copying build/lib/biorefineries/gas_fermentation/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,175 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/notebooks 2025-06-02T02:56:18,176 copying build/lib/biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/notebooks 2025-06-02T02:56:18,179 copying build/lib/biorefineries/gas_fermentation/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,182 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/results 2025-06-02T02:56:18,183 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,193 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000 -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,199 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,206 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,208 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000 -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,213 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-02T02:56:18,216 copying build/lib/biorefineries/gas_fermentation/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,219 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/images 2025-06-02T02:56:18,220 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,235 copying build/lib/biorefineries/gas_fermentation/images/spearman.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,245 copying build/lib/biorefineries/gas_fermentation/images/spearman.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,249 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,255 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,276 copying build/lib/biorefineries/gas_fermentation/images/uncertainty.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,279 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,287 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,293 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,306 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,309 copying build/lib/biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,313 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,330 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,333 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,337 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,351 copying build/lib/biorefineries/gas_fermentation/images/impact.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,355 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,368 copying build/lib/biorefineries/gas_fermentation/images/H2_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,372 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,386 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,391 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,402 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,415 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,425 copying build/lib/biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,429 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,433 copying build/lib/biorefineries/gas_fermentation/images/kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,450 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,464 copying build/lib/biorefineries/gas_fermentation/images/preliminary_contour.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,468 copying build/lib/biorefineries/gas_fermentation/images/kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,476 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,479 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,489 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,495 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,508 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,520 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,524 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,533 copying build/lib/biorefineries/gas_fermentation/images/impact.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-02T02:56:18,537 copying build/lib/biorefineries/gas_fermentation/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-02T02:56:18,541 creating build/bdist.linux-armv7l/wheel/biorefineries/tests 2025-06-02T02:56:18,542 copying build/lib/biorefineries/tests/test_biorefineries.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-02T02:56:18,545 copying build/lib/biorefineries/tests/run_readmes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-02T02:56:18,547 copying build/lib/biorefineries/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-02T02:56:18,549 running install_egg_info 2025-06-02T02:56:18,586 running egg_info 2025-06-02T02:56:18,614 writing biorefineries.egg-info/PKG-INFO 2025-06-02T02:56:18,617 writing dependency_links to biorefineries.egg-info/dependency_links.txt 2025-06-02T02:56:18,619 writing requirements to biorefineries.egg-info/requires.txt 2025-06-02T02:56:18,621 writing top-level names to biorefineries.egg-info/top_level.txt 2025-06-02T02:56:18,701 reading manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-02T02:56:18,718 adding license file 'LICENSE.txt' 2025-06-02T02:56:18,732 writing manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-02T02:56:18,734 Copying biorefineries.egg-info to build/bdist.linux-armv7l/wheel/./biorefineries-2.34.2-py3.11.egg-info 2025-06-02T02:56:18,745 running install_scripts 2025-06-02T02:56:18,756 creating build/bdist.linux-armv7l/wheel/biorefineries-2.34.2.dist-info/WHEEL 2025-06-02T02:56:18,759 creating '/tmp/pip-wheel-nk26d6q5/biorefineries-2.34.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-02T02:56:18,762 adding 'biorefineries/__init__.py' 2025-06-02T02:56:18,765 adding 'biorefineries/LAOs/README.rst' 2025-06-02T02:56:18,767 adding 'biorefineries/LAOs/__init__.py' 2025-06-02T02:56:18,769 adding 'biorefineries/LAOs/_chemicals.py' 2025-06-02T02:56:18,771 adding 'biorefineries/LAOs/_process_specifications.py' 2025-06-02T02:56:18,774 adding 'biorefineries/LAOs/_system.py' 2025-06-02T02:56:18,776 adding 'biorefineries/LAOs/_tea.py' 2025-06-02T02:56:19,269 adding 'biorefineries/LAOs/analysis.ipynb' 2025-06-02T02:56:19,292 adding 'biorefineries/LAOs/chemicals.yaml' 2025-06-02T02:56:19,293 adding 'biorefineries/LAOs/streams.yaml' 2025-06-02T02:56:19,295 adding 'biorefineries/LAOs/utils.py' 2025-06-02T02:56:19,297 adding 'biorefineries/LAOs/units/__init__.py' 2025-06-02T02:56:19,298 adding 'biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py' 2025-06-02T02:56:19,299 adding 'biorefineries/LAOs/units/nitrogen_generation_package.py' 2025-06-02T02:56:19,301 adding 'biorefineries/LAOs/units/surge_tank.py' 2025-06-02T02:56:19,302 adding 'biorefineries/abm/abm_yield_example.py' 2025-06-02T02:56:19,304 adding 'biorefineries/abm/breakdown.py' 2025-06-02T02:56:19,305 adding 'biorefineries/abm/corn.py' 2025-06-02T02:56:19,307 adding 'biorefineries/abm/cornstover.py' 2025-06-02T02:56:19,309 adding 'biorefineries/biodiesel/__init__.py' 2025-06-02T02:56:19,310 adding 'biorefineries/biodiesel/streams.py' 2025-06-02T02:56:19,313 adding 'biorefineries/biodiesel/systems.py' 2025-06-02T02:56:19,315 adding 'biorefineries/biodiesel/units/__init__.py' 2025-06-02T02:56:19,316 adding 'biorefineries/biodiesel/units/glycerolysis_reactor.py' 2025-06-02T02:56:19,318 adding 'biorefineries/biodiesel/units/skimming_tank.py' 2025-06-02T02:56:19,319 adding 'biorefineries/biodiesel/units/transesterification.py' 2025-06-02T02:56:19,322 adding 'biorefineries/cane/README.md' 2025-06-02T02:56:19,324 adding 'biorefineries/cane/__init__.py' 2025-06-02T02:56:19,333 adding 'biorefineries/cane/biorefinery.py' 2025-06-02T02:56:19,335 adding 'biorefineries/cane/chemicals.py' 2025-06-02T02:56:19,338 adding 'biorefineries/cane/composition.py' 2025-06-02T02:56:19,343 adding 'biorefineries/cane/configurations_biomass_yield_analysis.npy' 2025-06-02T02:56:19,348 adding 'biorefineries/cane/contour_plots.py' 2025-06-02T02:56:19,351 adding 'biorefineries/cane/evaluation.py' 2025-06-02T02:56:19,353 adding 'biorefineries/cane/feature_mockups.py' 2025-06-02T02:56:19,355 adding 'biorefineries/cane/oil_extraction.py' 2025-06-02T02:56:19,356 adding 'biorefineries/cane/parse_configuration.py' 2025-06-02T02:56:19,358 adding 'biorefineries/cane/process_settings.py' 2025-06-02T02:56:19,359 adding 'biorefineries/cane/rename_soon.py' 2025-06-02T02:56:19,361 adding 'biorefineries/cane/results.py' 2025-06-02T02:56:19,362 adding 'biorefineries/cane/streams.py' 2025-06-02T02:56:19,364 adding 'biorefineries/cane/tables.py' 2025-06-02T02:56:19,371 adding 'biorefineries/cane/uncertainty_plots.py' 2025-06-02T02:56:19,374 adding 'biorefineries/cane/units.py' 2025-06-02T02:56:19,404 adding 'biorefineries/cane/data/RIN_prices_2022.csv' 2025-06-02T02:56:19,423 adding 'biorefineries/cane/data/RIN_prices_2023.csv' 2025-06-02T02:56:19,426 adding 'biorefineries/cane/data/cane_composition_data.xlsx' 2025-06-02T02:56:19,428 adding 'biorefineries/cane/data/cane_composition_data_full.xlsx' 2025-06-02T02:56:19,430 adding 'biorefineries/cane/data/lca_characterization_factors.py' 2025-06-02T02:56:19,431 adding 'biorefineries/cane/data/microbial_oil_baseline.py' 2025-06-02T02:56:19,433 adding 'biorefineries/cane/data/price_distributions_2022.py' 2025-06-02T02:56:19,435 adding 'biorefineries/cane/data/price_distributions_2023.py' 2025-06-02T02:56:19,437 adding 'biorefineries/cane/systems/__init__.py' 2025-06-02T02:56:19,438 adding 'biorefineries/cane/systems/bagasse.py' 2025-06-02T02:56:19,439 adding 'biorefineries/cane/systems/biodiesel.py' 2025-06-02T02:56:19,441 adding 'biorefineries/cane/systems/biodiesel_actag.py' 2025-06-02T02:56:19,443 adding 'biorefineries/cane/systems/cellulosic_biodiesel.py' 2025-06-02T02:56:19,444 adding 'biorefineries/cane/systems/cellulosic_biodiesel_actag.py' 2025-06-02T02:56:19,448 adding 'biorefineries/cane/systems/fermentation.py' 2025-06-02T02:56:19,450 adding 'biorefineries/cane/systems/juicing.py' 2025-06-02T02:56:19,451 adding 'biorefineries/cane/systems/lipid_extraction.py' 2025-06-02T02:56:19,453 adding 'biorefineries/cane/systems/lipidcane.py' 2025-06-02T02:56:19,454 adding 'biorefineries/cane/systems/pretreatment.py' 2025-06-02T02:56:19,456 adding 'biorefineries/cane/systems/sugar.py' 2025-06-02T02:56:19,458 adding 'biorefineries/cane/systems/oilcane/__init__.py' 2025-06-02T02:56:19,460 adding 'biorefineries/cane/systems/oilcane/biodiesel_ethanol.py' 2025-06-02T02:56:19,461 adding 'biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py' 2025-06-02T02:56:19,463 adding 'biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py' 2025-06-02T02:56:19,464 adding 'biorefineries/cane/systems/oilcane/crude_oil_ethanol.py' 2025-06-02T02:56:19,466 adding 'biorefineries/cane/systems/sugarcane/__init__.py' 2025-06-02T02:56:19,468 adding 'biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py' 2025-06-02T02:56:19,470 adding 'biorefineries/cane/systems/sugarcane/ethanol.py' 2025-06-02T02:56:19,471 adding 'biorefineries/cane/systems/sugarcane/sugar_ethanol.py' 2025-06-02T02:56:19,473 adding 'biorefineries/cellulosic/__init__.py' 2025-06-02T02:56:19,475 adding 'biorefineries/cellulosic/biorefinery.py' 2025-06-02T02:56:19,477 adding 'biorefineries/cellulosic/chemicals.py' 2025-06-02T02:56:19,479 adding 'biorefineries/cellulosic/process_settings.py' 2025-06-02T02:56:19,480 adding 'biorefineries/cellulosic/streams.py' 2025-06-02T02:56:19,484 adding 'biorefineries/cellulosic/units.py' 2025-06-02T02:56:19,486 adding 'biorefineries/cellulosic/systems/__init__.py' 2025-06-02T02:56:19,488 adding 'biorefineries/cellulosic/systems/cellulosic_ethanol.py' 2025-06-02T02:56:19,490 adding 'biorefineries/cellulosic/systems/fermentation/__init__.py' 2025-06-02T02:56:19,492 adding 'biorefineries/cellulosic/systems/fermentation/cofermentation.py' 2025-06-02T02:56:19,494 adding 'biorefineries/cellulosic/systems/fermentation/general_interface.py' 2025-06-02T02:56:19,496 adding 'biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py' 2025-06-02T02:56:19,498 adding 'biorefineries/cellulosic/systems/fermentation/saccharification.py' 2025-06-02T02:56:19,499 adding 'biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py' 2025-06-02T02:56:19,501 adding 'biorefineries/cellulosic/systems/pretreatment/__init__.py' 2025-06-02T02:56:19,503 adding 'biorefineries/cellulosic/systems/pretreatment/alkaline.py' 2025-06-02T02:56:19,504 adding 'biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py' 2025-06-02T02:56:19,506 adding 'biorefineries/cellulosic/systems/pretreatment/dilute_acid.py' 2025-06-02T02:56:19,507 adding 'biorefineries/cellulosic/systems/pretreatment/hot_water.py' 2025-06-02T02:56:19,509 adding 'biorefineries/corn/README.md' 2025-06-02T02:56:19,511 adding 'biorefineries/corn/__init__.py' 2025-06-02T02:56:19,512 adding 'biorefineries/corn/biorefinery.py' 2025-06-02T02:56:19,513 adding 'biorefineries/corn/chemicals.py' 2025-06-02T02:56:19,515 adding 'biorefineries/corn/process_settings.py' 2025-06-02T02:56:19,517 adding 'biorefineries/corn/systems.py' 2025-06-02T02:56:19,519 adding 'biorefineries/corn/tea.py' 2025-06-02T02:56:19,521 adding 'biorefineries/corn/units.py' 2025-06-02T02:56:19,523 adding 'biorefineries/corn/utils.py' 2025-06-02T02:56:19,525 adding 'biorefineries/cornstover/README.rst' 2025-06-02T02:56:19,527 adding 'biorefineries/cornstover/__init__.py' 2025-06-02T02:56:19,528 adding 'biorefineries/cornstover/_analysis.py' 2025-06-02T02:56:19,530 adding 'biorefineries/cornstover/_chemicals.py' 2025-06-02T02:56:19,531 adding 'biorefineries/cornstover/_legacy_code.py' 2025-06-02T02:56:19,533 adding 'biorefineries/cornstover/_plot_bars.py' 2025-06-02T02:56:19,534 adding 'biorefineries/cornstover/_plot_single_point.py' 2025-06-02T02:56:19,536 adding 'biorefineries/cornstover/_plot_spearman.py' 2025-06-02T02:56:19,538 adding 'biorefineries/cornstover/_plot_uncertainty.py' 2025-06-02T02:56:19,539 adding 'biorefineries/cornstover/_process_settings.py' 2025-06-02T02:56:19,540 adding 'biorefineries/cornstover/_sankey.py' 2025-06-02T02:56:19,542 adding 'biorefineries/cornstover/_switchgrass.py' 2025-06-02T02:56:19,543 adding 'biorefineries/cornstover/_tea.py' 2025-06-02T02:56:19,544 adding 'biorefineries/cornstover/model.py' 2025-06-02T02:56:19,546 adding 'biorefineries/cornstover/systems.py' 2025-06-02T02:56:19,547 adding 'biorefineries/cornstover/units.py' 2025-06-02T02:56:19,549 adding 'biorefineries/cornstover/webapp_model.py' 2025-06-02T02:56:19,551 adding 'biorefineries/ethanol/__init__.py' 2025-06-02T02:56:19,552 adding 'biorefineries/ethanol/streams.py' 2025-06-02T02:56:19,554 adding 'biorefineries/ethanol/systems.py' 2025-06-02T02:56:19,556 adding 'biorefineries/fattyalcohols/README.rst' 2025-06-02T02:56:19,557 adding 'biorefineries/fattyalcohols/__init__.py' 2025-06-02T02:56:19,558 adding 'biorefineries/fattyalcohols/_chemicals.py' 2025-06-02T02:56:19,560 adding 'biorefineries/fattyalcohols/_fattyalcohol_production.py' 2025-06-02T02:56:19,562 adding 'biorefineries/fattyalcohols/_process_specifications.py' 2025-06-02T02:56:19,564 adding 'biorefineries/fattyalcohols/_system.py' 2025-06-02T02:56:19,565 adding 'biorefineries/fattyalcohols/_tea.py' 2025-06-02T02:56:19,567 adding 'biorefineries/fattyalcohols/chemicals.yaml' 2025-06-02T02:56:19,569 adding 'biorefineries/fattyalcohols/streams.yaml' 2025-06-02T02:56:19,571 adding 'biorefineries/fattyalcohols/utils.py' 2025-06-02T02:56:19,573 adding 'biorefineries/fattyalcohols/units/__init__.py' 2025-06-02T02:56:19,574 adding 'biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py' 2025-06-02T02:56:19,576 adding 'biorefineries/fattyalcohols/units/slle_centrifuge.py' 2025-06-02T02:56:19,578 adding 'biorefineries/gas_fermentation/README.md' 2025-06-02T02:56:19,579 adding 'biorefineries/gas_fermentation/__init__.py' 2025-06-02T02:56:19,582 adding 'biorefineries/gas_fermentation/biorefinery.py' 2025-06-02T02:56:19,584 adding 'biorefineries/gas_fermentation/chemicals.py' 2025-06-02T02:56:19,585 adding 'biorefineries/gas_fermentation/data.py' 2025-06-02T02:56:19,587 adding 'biorefineries/gas_fermentation/plots.py' 2025-06-02T02:56:19,589 adding 'biorefineries/gas_fermentation/process_settings.py' 2025-06-02T02:56:19,593 adding 'biorefineries/gas_fermentation/systems.py' 2025-06-02T02:56:19,595 adding 'biorefineries/gas_fermentation/tables.py' 2025-06-02T02:56:19,596 adding 'biorefineries/gas_fermentation/tests.py' 2025-06-02T02:56:19,601 adding 'biorefineries/gas_fermentation/uncertainty.py' 2025-06-02T02:56:19,603 adding 'biorefineries/gas_fermentation/units.py' 2025-06-02T02:56:19,612 adding 'biorefineries/gas_fermentation/images/AcEster_contours.svg' 2025-06-02T02:56:19,620 adding 'biorefineries/gas_fermentation/images/AcOH_contours.svg' 2025-06-02T02:56:19,688 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png' 2025-06-02T02:56:19,700 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg' 2025-06-02T02:56:19,706 adding 'biorefineries/gas_fermentation/images/H2_contours.svg' 2025-06-02T02:56:19,757 adding 'biorefineries/gas_fermentation/images/MSP_CI_kde.png' 2025-06-02T02:56:19,778 adding 'biorefineries/gas_fermentation/images/MSP_CI_kde.svg' 2025-06-02T02:56:19,811 adding 'biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png' 2025-06-02T02:56:19,819 adding 'biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg' 2025-06-02T02:56:19,863 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png' 2025-06-02T02:56:19,886 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg' 2025-06-02T02:56:19,934 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png' 2025-06-02T02:56:19,958 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg' 2025-06-02T02:56:20,024 adding 'biorefineries/gas_fermentation/images/configuration_kde.png' 2025-06-02T02:56:20,046 adding 'biorefineries/gas_fermentation/images/configuration_kde.svg' 2025-06-02T02:56:20,100 adding 'biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png' 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'biorefineries/gas_fermentation/images/montecarlo_absolute.svg' 2025-06-02T02:56:20,478 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.png' 2025-06-02T02:56:20,492 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg' 2025-06-02T02:56:20,497 adding 'biorefineries/gas_fermentation/images/preliminary_contour.png' 2025-06-02T02:56:20,500 adding 'biorefineries/gas_fermentation/images/preliminary_flowsheet.svg' 2025-06-02T02:56:20,504 adding 'biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg' 2025-06-02T02:56:20,510 adding 'biorefineries/gas_fermentation/images/sensitivity.png' 2025-06-02T02:56:20,519 adding 'biorefineries/gas_fermentation/images/sensitivity.svg' 2025-06-02T02:56:20,541 adding 'biorefineries/gas_fermentation/images/spearman.png' 2025-06-02T02:56:20,547 adding 'biorefineries/gas_fermentation/images/spearman.svg' 2025-06-02T02:56:20,551 adding 'biorefineries/gas_fermentation/images/uncertainty.png' 2025-06-02T02:56:20,553 adding 'biorefineries/gas_fermentation/notebooks/arpa_e_project.py' 2025-06-02T02:56:20,570 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000' 2025-06-02T02:56:20,605 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx' 2025-06-02T02:56:20,609 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx' 2025-06-02T02:56:20,624 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000' 2025-06-02T02:56:20,659 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx' 2025-06-02T02:56:20,662 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx' 2025-06-02T02:56:20,665 adding 'biorefineries/lactic/README.rst' 2025-06-02T02:56:20,667 adding 'biorefineries/lactic/__init__.py' 2025-06-02T02:56:20,669 adding 'biorefineries/lactic/_chemicals.py' 2025-06-02T02:56:20,671 adding 'biorefineries/lactic/_process_settings.py' 2025-06-02T02:56:20,675 adding 'biorefineries/lactic/_processes.py' 2025-06-02T02:56:20,677 adding 'biorefineries/lactic/_profile.py' 2025-06-02T02:56:20,678 adding 'biorefineries/lactic/_tea.py' 2025-06-02T02:56:20,685 adding 'biorefineries/lactic/_units.py' 2025-06-02T02:56:20,688 adding 'biorefineries/lactic/models.py' 2025-06-02T02:56:20,690 adding 'biorefineries/lactic/systems.py' 2025-06-02T02:56:20,692 adding 'biorefineries/lactic/utils.py' 2025-06-02T02:56:20,694 adding 'biorefineries/lactic/analyses/1_uncertainties.py' 2025-06-02T02:56:20,696 adding 'biorefineries/lactic/analyses/2_fermentation_TRY.py' 2025-06-02T02:56:20,698 adding 'biorefineries/lactic/analyses/3_feedstock_carb-price.py' 2025-06-02T02:56:20,700 adding 'biorefineries/lipidcane/README.rst' 2025-06-02T02:56:20,701 adding 'biorefineries/lipidcane/__init__.py' 2025-06-02T02:56:20,703 adding 'biorefineries/lipidcane/_analysis.py' 2025-06-02T02:56:20,704 adding 'biorefineries/lipidcane/_chemicals.py' 2025-06-02T02:56:20,705 adding 'biorefineries/lipidcane/_feedstock_analysis.py' 2025-06-02T02:56:20,707 adding 'biorefineries/lipidcane/_plot_spearman.py' 2025-06-02T02:56:20,708 adding 'biorefineries/lipidcane/_plot_uncertainty.py' 2025-06-02T02:56:20,710 adding 'biorefineries/lipidcane/_process_settings.py' 2025-06-02T02:56:20,711 adding 'biorefineries/lipidcane/_system.py' 2025-06-02T02:56:20,712 adding 'biorefineries/lipidcane/_tea.py' 2025-06-02T02:56:20,714 adding 'biorefineries/lipidcane/_webapp_model.py' 2025-06-02T02:56:20,715 adding 'biorefineries/lipidcane/model.py' 2025-06-02T02:56:21,148 adding 'biorefineries/lipidcane/sankey_plot.ipynb' 2025-06-02T02:56:21,349 adding 'biorefineries/milk/GalactoOligoSaccharideProcess.xlsx' 2025-06-02T02:56:21,360 adding 'biorefineries/milk/README.md' 2025-06-02T02:56:21,361 adding 'biorefineries/milk/__init__.py' 2025-06-02T02:56:21,363 adding 'biorefineries/milk/biorefinery.py' 2025-06-02T02:56:21,365 adding 'biorefineries/milk/chemicals.py' 2025-06-02T02:56:21,366 adding 'biorefineries/milk/data.py' 2025-06-02T02:56:21,368 adding 'biorefineries/milk/plots.py' 2025-06-02T02:56:21,369 adding 'biorefineries/milk/process_settings.py' 2025-06-02T02:56:21,371 adding 'biorefineries/milk/systems.py' 2025-06-02T02:56:21,373 adding 'biorefineries/milk/tests.py' 2025-06-02T02:56:21,376 adding 'biorefineries/milk/uncertainty.py' 2025-06-02T02:56:21,378 adding 'biorefineries/milk/units.py' 2025-06-02T02:56:21,426 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png' 2025-06-02T02:56:21,435 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg' 2025-06-02T02:56:21,481 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png' 2025-06-02T02:56:21,490 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg' 2025-06-02T02:56:21,559 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png' 2025-06-02T02:56:21,571 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg' 2025-06-02T02:56:21,573 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy' 2025-06-02T02:56:21,575 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy' 2025-06-02T02:56:21,577 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy' 2025-06-02T02:56:21,579 adding 'biorefineries/oilcane/README.md' 2025-06-02T02:56:21,581 adding 'biorefineries/oilcane/__init__.py' 2025-06-02T02:56:21,582 adding 'biorefineries/oilcane/_chemicals.py' 2025-06-02T02:56:21,584 adding 'biorefineries/oilcane/_contour_plots.py' 2025-06-02T02:56:21,586 adding 'biorefineries/oilcane/_evaluation.py' 2025-06-02T02:56:21,587 adding 'biorefineries/oilcane/_feature_mockups.py' 2025-06-02T02:56:21,589 adding 'biorefineries/oilcane/_line_plots.py' 2025-06-02T02:56:21,591 adding 'biorefineries/oilcane/_load_data.py' 2025-06-02T02:56:21,593 adding 'biorefineries/oilcane/_parse_configuration.py' 2025-06-02T02:56:21,594 adding 'biorefineries/oilcane/_tables.py' 2025-06-02T02:56:21,595 adding 'biorefineries/oilcane/_tea.py' 2025-06-02T02:56:21,602 adding 'biorefineries/oilcane/_uncertainty_plots.py' 2025-06-02T02:56:21,603 adding 'biorefineries/oilcane/lca_benchmarks.py' 2025-06-02T02:56:22,063 adding 'biorefineries/oilcane/sankey_energy.ipynb' 2025-06-02T02:56:22,091 adding 'biorefineries/oilcane/sankey_plot.ipynb' 2025-06-02T02:56:22,093 adding 'biorefineries/oilcane/systems.py' 2025-06-02T02:56:22,095 adding 'biorefineries/oilcane/units.py' 2025-06-02T02:56:22,097 adding 'biorefineries/oilcane/utils.py' 2025-06-02T02:56:22,099 adding 'biorefineries/oilcane/webapp_model.py' 2025-06-02T02:56:22,101 adding 'biorefineries/sugarcane/README.rst' 2025-06-02T02:56:22,103 adding 'biorefineries/sugarcane/__init__.py' 2025-06-02T02:56:22,104 adding 'biorefineries/sugarcane/_chemicals.py' 2025-06-02T02:56:22,105 adding 'biorefineries/sugarcane/_process_settings.py' 2025-06-02T02:56:22,106 adding 'biorefineries/sugarcane/_tea.py' 2025-06-02T02:56:22,108 adding 'biorefineries/sugarcane/model.py' 2025-06-02T02:56:22,109 adding 'biorefineries/sugarcane/systems.py' 2025-06-02T02:56:22,111 adding 'biorefineries/tea/__init__.py' 2025-06-02T02:56:22,113 adding 'biorefineries/tea/cellulosic_ethanol_tea.py' 2025-06-02T02:56:22,115 adding 'biorefineries/tea/conventional_ethanol_tea.py' 2025-06-02T02:56:22,117 adding 'biorefineries/tests/__init__.py' 2025-06-02T02:56:22,119 adding 'biorefineries/tests/run_readmes.py' 2025-06-02T02:56:22,122 adding 'biorefineries/tests/test_biorefineries.py' 2025-06-02T02:56:22,125 adding 'biorefineries-2.34.2.dist-info/licenses/LICENSE.txt' 2025-06-02T02:56:22,126 adding 'biorefineries-2.34.2.dist-info/METADATA' 2025-06-02T02:56:22,128 adding 'biorefineries-2.34.2.dist-info/WHEEL' 2025-06-02T02:56:22,129 adding 'biorefineries-2.34.2.dist-info/top_level.txt' 2025-06-02T02:56:22,133 adding 'biorefineries-2.34.2.dist-info/RECORD' 2025-06-02T02:56:22,304 removing build/bdist.linux-armv7l/wheel 2025-06-02T02:56:22,509 Building wheel for biorefineries (setup.py): finished with status 'done' 2025-06-02T02:56:22,693 Created wheel for biorefineries: filename=biorefineries-2.34.2-py3-none-any.whl size=11787812 sha256=047da6cc77b0e613939d2bb1b6ccf1793606ef3744bfff95c11ceb44356d04d4 2025-06-02T02:56:22,694 Stored in directory: /tmp/pip-ephem-wheel-cache-foayvvnm/wheels/f8/cc/68/e9402cda6ee292fa05c02e27f64301ee2ebdfc4e202839f77b 2025-06-02T02:56:22,718 Successfully built biorefineries 2025-06-02T02:56:23,072 Removed build tracker: '/tmp/pip-build-tracker-bnu21ye2'