2025-06-02T08:34:05,884 Created temporary directory: /tmp/pip-build-tracker-_fkval1h 2025-06-02T08:34:05,885 Initialized build tracking at /tmp/pip-build-tracker-_fkval1h 2025-06-02T08:34:05,885 Created build tracker: /tmp/pip-build-tracker-_fkval1h 2025-06-02T08:34:05,886 Entered build tracker: /tmp/pip-build-tracker-_fkval1h 2025-06-02T08:34:05,887 Created temporary directory: /tmp/pip-wheel-oxky4cx8 2025-06-02T08:34:05,891 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ohw7b3q 2025-06-02T08:34:05,940 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T08:34:05,943 2 location(s) to search for versions of py4cytoscape: 2025-06-02T08:34:05,943 * https://pypi.org/simple/py4cytoscape/ 2025-06-02T08:34:05,943 * https://www.piwheels.org/simple/py4cytoscape/ 2025-06-02T08:34:05,944 Fetching project page and analyzing links: https://pypi.org/simple/py4cytoscape/ 2025-06-02T08:34:05,944 Getting page https://pypi.org/simple/py4cytoscape/ 2025-06-02T08:34:05,946 Found index url https://pypi.org/simple/ 2025-06-02T08:34:06,171 Fetched page https://pypi.org/simple/py4cytoscape/ as application/vnd.pypi.simple.v1+json 2025-06-02T08:34:06,184 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/39/78/5b6e07df4da48468ef4b5ba19e5f964aff138c49f67ae04e604f2151aa0c/py4cytoscape-0.0.1-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,187 Found link https://files.pythonhosted.org/packages/46/62/48055f33bb3c81abcc31cd95c5f41492b8d4ebb36a57c0b8e3b49e2092f7/py4cytoscape-0.0.1.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.1 2025-06-02T08:34:06,188 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/b3/7c/13f320e59e7b7608792a53e305fc8f69b936c4fd4f0b28859fa1341375ec/py4cytoscape-0.0.3-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,189 Found link https://files.pythonhosted.org/packages/4b/a8/94e3d81669a3e292867ebffc2152e155958fb1687b9f48521032c8872640/py4cytoscape-0.0.3.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.3 2025-06-02T08:34:06,190 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/e1/ff/16b200f9393b67de9dc19ce244cb0b026fc0cb0a967abed191c1a78c018d/py4cytoscape-0.0.4-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,191 Found link https://files.pythonhosted.org/packages/05/23/3539fcff0ef5b0880998cf4a3ddbc03f19acba307e3988a2553fd1e1edd6/py4cytoscape-0.0.4.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.4 2025-06-02T08:34:06,191 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/f1/01/42d5645238a93e289f82323e34310f98c6654919990858cecbd7793ebf96/py4cytoscape-0.0.5-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,192 Found link https://files.pythonhosted.org/packages/11/f2/b5c938787a4549ea8505401245c3788efca185ac41c00db3f8ade4d93ef4/py4cytoscape-0.0.5.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.5 2025-06-02T08:34:06,193 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/36/89/e3bf0ba869f99c5695a53fd540f259738aa8bd806c8741ab628fb64471ba/py4cytoscape-0.0.6-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,193 Found link https://files.pythonhosted.org/packages/7b/ba/f356a5ae27cc4e4ca2a5c4d8c2567dcbf42bbc6343e363be9910423e3a08/py4cytoscape-0.0.6.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.6 2025-06-02T08:34:06,194 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/44/c1/36fd9548a438113105efa8f2d397c859d73d7236bfe6f98b50516f2fc202/py4cytoscape-0.0.7-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,195 Found link https://files.pythonhosted.org/packages/3d/34/a5012365a2c9c601e29e90dd1db61ea263eea031b6bf080d8775178990c9/py4cytoscape-0.0.7.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.7 2025-06-02T08:34:06,196 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/df/98/87143ee67ade4e81642988b34cc3d20ff843d20568fab3950ca5af51ea6b/py4cytoscape-0.0.8-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,196 Found link https://files.pythonhosted.org/packages/bd/7a/0d08c8ebbfa38c14dad3e16f5f44ee0b86a45e3fcaafddd2a4621786aba2/py4cytoscape-0.0.8.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.8 2025-06-02T08:34:06,197 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/e6/4c/b6d4dc780be2de727a3b06c5b99be7290d9d28131691c36361f3ee1fb811/py4cytoscape-0.0.9-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,197 Found link https://files.pythonhosted.org/packages/ea/84/0592c272b6c94f9396817db51d75b4698c9c3725505faecb71a98db2a6a6/py4cytoscape-0.0.9.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.9 2025-06-02T08:34:06,198 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/5c/58/65773e1ab0ca4bdc870516fafd48eb7782bc945d00bc42eac7d4463c7b85/py4cytoscape-0.0.10-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,199 Found link https://files.pythonhosted.org/packages/fe/44/a66908d3377a4e1c7af68573e7d29cad9d28f45801276ac95e2001bd7363/py4cytoscape-0.0.10.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.10 2025-06-02T08:34:06,199 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/ef/99/e3c0e62f501a6b40343a4fe728ee60f5069a0da14431618c804a52a548f9/py4cytoscape-0.0.11-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6) 2025-06-02T08:34:06,200 Found link https://files.pythonhosted.org/packages/76/09/951a4b428c7eff6e74f7b2da40c7af405314f077616194e6f8849cd7c372/py4cytoscape-0.0.11.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.6), version: 0.0.11 2025-06-02T08:34:06,201 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/bd/1c/53cfdc49fa6756134e2fde48a2aa2564451f217c5b9979d5966abfa9cf89/py4cytoscape-1.2.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7) 2025-06-02T08:34:06,202 Found link https://files.pythonhosted.org/packages/36/d0/cab024e77509d9e05aee5c1138f1032d21ee1673cb1e61c452c9fb92f3f1/py4cytoscape-1.2.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7), version: 1.2.0 2025-06-02T08:34:06,203 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/b4/b4/77aa6af6dc171857bc2133d3dc4bfc1fc62d375692c18ac99ae9bc41562b/py4cytoscape-1.3.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7) 2025-06-02T08:34:06,204 Found link https://files.pythonhosted.org/packages/6d/95/b6529e7ad9ebd6608cb6a9c6945e22ba2f5ca2c343cba42267728dedcfb0/py4cytoscape-1.3.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7), version: 1.3.0 2025-06-02T08:34:06,204 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/21/af/49ef919da1bb7676f8f892542fa99eff1869827425f415e274587fa3cfa7/py4cytoscape-1.4.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7) 2025-06-02T08:34:06,205 Found link https://files.pythonhosted.org/packages/a2/a8/ec8d9c024cc477a85ebddfd65c019e5eb2a1efeb01287fe8c94d263d66f8/py4cytoscape-1.4.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7), version: 1.4.0 2025-06-02T08:34:06,206 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/4b/7f/c116d8949abcbe3aeedc942300b66a0129bb2d3f7b1ed59a82091ff26092/py4cytoscape-1.5.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7) 2025-06-02T08:34:06,207 Found link https://files.pythonhosted.org/packages/49/e8/3f73db5ca816f4804a9a83c5c40e8786b39c078512582ac626277cd47b7d/py4cytoscape-1.5.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7), version: 1.5.0 2025-06-02T08:34:06,207 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/d3/9b/9a16253915c8247aece747bd5417a2ec622383ee883e7f4e850162245bbf/py4cytoscape-1.6.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7) 2025-06-02T08:34:06,208 Found link https://files.pythonhosted.org/packages/37/a1/334f34f0c12fd01261fc4d9285c752aac4f72d7d493b51f30583f616e543/py4cytoscape-1.6.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.7), version: 1.6.0 2025-06-02T08:34:06,208 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/14/52/b8bf2dd4dd16accd0ba5b98714b94e213d358faaeac90cf970fe61b6b331/py4cytoscape-1.7.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,209 Found link https://files.pythonhosted.org/packages/d5/b0/a380a44e96dd90e30a392ad06c1307769aa5d33fb375813043d6d186b2a4/py4cytoscape-1.7.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.7.0 2025-06-02T08:34:06,210 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/63/32/2f75f0170daec43fcc3dc4a5daa729ef893eaf739dd83445f075514d5b5a/py4cytoscape-1.8.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,211 Found link https://files.pythonhosted.org/packages/57/9e/52116ed8ccf8f0cea7d479456766aaaea32cb2eb4898acf9fa05c19304c4/py4cytoscape-1.8.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.8.0 2025-06-02T08:34:06,211 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/da/d9/d04671d8e9b7ac40e01b13869ab2c96a2be5cf15361404f7d1ff30f839e8/py4cytoscape-1.9.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,212 Found link https://files.pythonhosted.org/packages/30/99/dc4c415802de6b2b18f3f43292018e3ed7ed212a26122c72bd93c722d410/py4cytoscape-1.9.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.9.0 2025-06-02T08:34:06,213 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/3e/ae/6d6b90c6e1ea8479a3e964fa5f5dd15c7251e982c31e405a381c1a485d51/py4cytoscape-1.10.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,213 Found link https://files.pythonhosted.org/packages/96/a5/6eff63ebaff9aa89ab0d28b7ffeffbdb1441d43084b7fb8baab80d5a44ff/py4cytoscape-1.10.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.10.0 2025-06-02T08:34:06,214 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/13/2d/f3877b53e95102064c5f6767bb83e5c337cbbf80563c9f3acb44c51ad1e1/py4cytoscape-1.11.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,215 Found link https://files.pythonhosted.org/packages/83/4c/1df6abdfa07f9f6f4d949b7883e4dee751651eaf6e1e92572f46deddce5c/py4cytoscape-1.11.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.11.0 2025-06-02T08:34:06,215 Skipping link: No binaries permitted for py4cytoscape: https://files.pythonhosted.org/packages/a6/e7/10cb8cb4f1dcb16fe5c98dd00ff745dca303671073ac29511306a6118d57/py4cytoscape-1.12.0-py3-none-any.whl (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8) 2025-06-02T08:34:06,216 Found link https://files.pythonhosted.org/packages/e0/61/30c5a4cfda1786493888d2630c2b09e20985fda8a33ae1b0eebddc6ffa74/py4cytoscape-1.12.0.tar.gz (from https://pypi.org/simple/py4cytoscape/) (requires-python:>=3.8), version: 1.12.0 2025-06-02T08:34:06,217 Fetching project page and analyzing links: https://www.piwheels.org/simple/py4cytoscape/ 2025-06-02T08:34:06,218 Getting page https://www.piwheels.org/simple/py4cytoscape/ 2025-06-02T08:34:06,219 Found index url https://www.piwheels.org/simple/ 2025-06-02T08:34:06,382 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/py4cytoscape/ 2025-06-02T08:34:07,048 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/py4cytoscape/ 2025-06-02T08:34:08,218 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/py4cytoscape/ 2025-06-02T08:34:10,388 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/py4cytoscape/ 2025-06-02T08:34:14,563 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/py4cytoscape/ 2025-06-02T08:34:14,744 Could not fetch URL https://www.piwheels.org/simple/py4cytoscape/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/py4cytoscape/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T08:34:14,747 Skipping link: not a file: https://www.piwheels.org/simple/py4cytoscape/ 2025-06-02T08:34:14,748 Skipping link: not a file: https://pypi.org/simple/py4cytoscape/ 2025-06-02T08:34:14,769 Given no hashes to check 1 links for project 'py4cytoscape': discarding no candidates 2025-06-02T08:34:14,771 Collecting py4cytoscape==1.12.0 2025-06-02T08:34:14,773 Created temporary directory: /tmp/pip-unpack-er_ebcfc 2025-06-02T08:34:15,005 Downloading py4cytoscape-1.12.0.tar.gz (249 kB) 2025-06-02T08:34:15,322 Added py4cytoscape==1.12.0 from https://files.pythonhosted.org/packages/e0/61/30c5a4cfda1786493888d2630c2b09e20985fda8a33ae1b0eebddc6ffa74/py4cytoscape-1.12.0.tar.gz to build tracker '/tmp/pip-build-tracker-_fkval1h' 2025-06-02T08:34:15,324 Running setup.py (path:/tmp/pip-wheel-oxky4cx8/py4cytoscape_8633ba00bc8d494a98b4b0fd07faeaf7/setup.py) egg_info for package py4cytoscape 2025-06-02T08:34:15,325 Created temporary directory: /tmp/pip-pip-egg-info-2k_qkowe 2025-06-02T08:34:15,325 Preparing metadata (setup.py): started 2025-06-02T08:34:15,327 Running command python setup.py egg_info 2025-06-02T08:34:15,931 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-02T08:34:15,931 !! 2025-06-02T08:34:15,932 ******************************************************************************** 2025-06-02T08:34:15,933 Requirements should be satisfied by a PEP 517 installer. 2025-06-02T08:34:15,933 If you are using pip, you can try `pip install --use-pep517`. 2025-06-02T08:34:15,936 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T08:34:15,936 or your builds will no longer be supported. 2025-06-02T08:34:15,937 ******************************************************************************** 2025-06-02T08:34:15,938 !! 2025-06-02T08:34:15,938 dist.fetch_build_eggs(dist.setup_requires) 2025-06-02T08:34:16,035 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-02T08:34:16,036 warnings.warn(msg) 2025-06-02T08:34:16,319 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T08:34:16,320 !! 2025-06-02T08:34:16,321 ******************************************************************************** 2025-06-02T08:34:16,322 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T08:34:16,323 License :: OSI Approved :: MIT License 2025-06-02T08:34:16,324 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T08:34:16,324 ******************************************************************************** 2025-06-02T08:34:16,325 !! 2025-06-02T08:34:16,326 self._finalize_license_expression() 2025-06-02T08:34:16,350 running egg_info 2025-06-02T08:34:16,379 creating /tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info 2025-06-02T08:34:16,380 writing /tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/PKG-INFO 2025-06-02T08:34:16,384 writing dependency_links to /tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/dependency_links.txt 2025-06-02T08:34:16,386 writing requirements to /tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/requires.txt 2025-06-02T08:34:16,387 writing top-level names to /tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/top_level.txt 2025-06-02T08:34:16,388 writing manifest file '/tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/SOURCES.txt' 2025-06-02T08:34:16,485 reading manifest file '/tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/SOURCES.txt' 2025-06-02T08:34:16,487 adding license file 'LICENSE.rst' 2025-06-02T08:34:16,491 writing manifest file '/tmp/pip-pip-egg-info-2k_qkowe/py4cytoscape.egg-info/SOURCES.txt' 2025-06-02T08:34:16,600 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T08:34:16,604 Source in /tmp/pip-wheel-oxky4cx8/py4cytoscape_8633ba00bc8d494a98b4b0fd07faeaf7 has version 1.12.0, which satisfies requirement py4cytoscape==1.12.0 from https://files.pythonhosted.org/packages/e0/61/30c5a4cfda1786493888d2630c2b09e20985fda8a33ae1b0eebddc6ffa74/py4cytoscape-1.12.0.tar.gz 2025-06-02T08:34:16,605 Removed py4cytoscape==1.12.0 from https://files.pythonhosted.org/packages/e0/61/30c5a4cfda1786493888d2630c2b09e20985fda8a33ae1b0eebddc6ffa74/py4cytoscape-1.12.0.tar.gz from build tracker '/tmp/pip-build-tracker-_fkval1h' 2025-06-02T08:34:16,613 Created temporary directory: /tmp/pip-unpack-6l50x_cw 2025-06-02T08:34:16,614 Created temporary directory: /tmp/pip-unpack-ccb0y_zb 2025-06-02T08:34:16,615 Building wheels for collected packages: py4cytoscape 2025-06-02T08:34:16,619 Created temporary directory: /tmp/pip-wheel-df9sns_x 2025-06-02T08:34:16,620 DEPRECATION: Building 'py4cytoscape' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'py4cytoscape'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T08:34:16,622 Building wheel for py4cytoscape (setup.py): started 2025-06-02T08:34:16,623 Destination directory: /tmp/pip-wheel-df9sns_x 2025-06-02T08:34:16,624 Running command python setup.py bdist_wheel 2025-06-02T08:34:17,397 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-02T08:34:17,398 !! 2025-06-02T08:34:17,399 ******************************************************************************** 2025-06-02T08:34:17,399 Requirements should be satisfied by a PEP 517 installer. 2025-06-02T08:34:17,399 If you are using pip, you can try `pip install --use-pep517`. 2025-06-02T08:34:17,400 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T08:34:17,401 or your builds will no longer be supported. 2025-06-02T08:34:17,402 ******************************************************************************** 2025-06-02T08:34:17,403 !! 2025-06-02T08:34:17,403 dist.fetch_build_eggs(dist.setup_requires) 2025-06-02T08:34:17,502 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-02T08:34:17,503 warnings.warn(msg) 2025-06-02T08:34:17,787 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T08:34:17,787 !! 2025-06-02T08:34:17,788 ******************************************************************************** 2025-06-02T08:34:17,789 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T08:34:17,790 License :: OSI Approved :: MIT License 2025-06-02T08:34:17,791 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T08:34:17,792 ******************************************************************************** 2025-06-02T08:34:17,793 !! 2025-06-02T08:34:17,794 self._finalize_license_expression() 2025-06-02T08:34:17,794 running bdist_wheel 2025-06-02T08:34:17,929 running build 2025-06-02T08:34:17,930 running build_py 2025-06-02T08:34:17,962 creating build/lib/py4cytoscape 2025-06-02T08:34:17,964 copying py4cytoscape/network_views.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,967 copying py4cytoscape/style_mappings.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,971 copying py4cytoscape/decorators.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,974 copying py4cytoscape/style_visual_props.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,977 copying py4cytoscape/collections.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,980 copying py4cytoscape/network_selection.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,983 copying py4cytoscape/session.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,986 copying py4cytoscape/py4cytoscape_utils.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,989 copying py4cytoscape/groups.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,992 copying py4cytoscape/style_values.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,996 copying py4cytoscape/filters.py -> build/lib/py4cytoscape 2025-06-02T08:34:17,999 copying py4cytoscape/py4cytoscape_tuning.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,001 copying py4cytoscape/user_interface.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,004 copying py4cytoscape/style_defaults.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,008 copying py4cytoscape/__init__.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,010 copying py4cytoscape/styles.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,014 copying py4cytoscape/cytoscape_system.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,016 copying py4cytoscape/apps.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,019 copying py4cytoscape/tables.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,022 copying py4cytoscape/notebook.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,025 copying py4cytoscape/style_bypasses.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,030 copying py4cytoscape/style_dependencies.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,033 copying py4cytoscape/annotations.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,037 copying py4cytoscape/commands.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,040 copying py4cytoscape/layouts.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,043 copying py4cytoscape/py4cytoscape_sandbox.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,046 copying py4cytoscape/_version.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,048 copying py4cytoscape/style_auto_mappings.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,053 copying py4cytoscape/py4cytoscape_logger.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,055 copying py4cytoscape/exceptions.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,058 copying py4cytoscape/cy_ndex.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,061 copying py4cytoscape/py4cytoscape_logger_settings.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,064 copying py4cytoscape/networks.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,068 copying py4cytoscape/py4cytoscape_notebook.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,071 copying py4cytoscape/sandbox.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,075 copying py4cytoscape/tools.py -> build/lib/py4cytoscape 2025-06-02T08:34:18,078 running egg_info 2025-06-02T08:34:18,111 writing py4cytoscape.egg-info/PKG-INFO 2025-06-02T08:34:18,116 writing dependency_links to py4cytoscape.egg-info/dependency_links.txt 2025-06-02T08:34:18,118 writing requirements to py4cytoscape.egg-info/requires.txt 2025-06-02T08:34:18,119 writing top-level names to py4cytoscape.egg-info/top_level.txt 2025-06-02T08:34:18,155 reading manifest file 'py4cytoscape.egg-info/SOURCES.txt' 2025-06-02T08:34:18,161 adding license file 'LICENSE.rst' 2025-06-02T08:34:18,166 writing manifest file 'py4cytoscape.egg-info/SOURCES.txt' 2025-06-02T08:34:18,199 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T08:34:18,199 !! 2025-06-02T08:34:18,201 ******************************************************************************** 2025-06-02T08:34:18,201 Please avoid running ``setup.py`` directly. 2025-06-02T08:34:18,202 Instead, use pypa/build, pypa/installer or other 2025-06-02T08:34:18,203 standards-based tools. 2025-06-02T08:34:18,204 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T08:34:18,205 or your builds will no longer be supported. 2025-06-02T08:34:18,206 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T08:34:18,207 ******************************************************************************** 2025-06-02T08:34:18,208 !! 2025-06-02T08:34:18,208 self.initialize_options() 2025-06-02T08:34:18,232 installing to build/bdist.linux-armv7l/wheel 2025-06-02T08:34:18,233 running install 2025-06-02T08:34:18,259 running install_lib 2025-06-02T08:34:18,287 creating build/bdist.linux-armv7l/wheel 2025-06-02T08:34:18,290 creating build/bdist.linux-armv7l/wheel/py4cytoscape 2025-06-02T08:34:18,291 copying build/lib/py4cytoscape/network_views.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,295 copying build/lib/py4cytoscape/style_mappings.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,299 copying build/lib/py4cytoscape/decorators.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,302 copying build/lib/py4cytoscape/style_visual_props.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,304 copying build/lib/py4cytoscape/collections.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,307 copying build/lib/py4cytoscape/network_selection.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,311 copying build/lib/py4cytoscape/session.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,314 copying build/lib/py4cytoscape/py4cytoscape_utils.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,319 copying build/lib/py4cytoscape/groups.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,322 copying build/lib/py4cytoscape/style_values.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,326 copying build/lib/py4cytoscape/filters.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,329 copying build/lib/py4cytoscape/py4cytoscape_tuning.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,332 copying build/lib/py4cytoscape/user_interface.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,334 copying build/lib/py4cytoscape/style_defaults.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,339 copying build/lib/py4cytoscape/__init__.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,342 copying build/lib/py4cytoscape/styles.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,345 copying build/lib/py4cytoscape/cytoscape_system.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,348 copying build/lib/py4cytoscape/apps.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,351 copying build/lib/py4cytoscape/tables.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,354 copying build/lib/py4cytoscape/notebook.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,357 copying build/lib/py4cytoscape/style_bypasses.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,363 copying build/lib/py4cytoscape/style_dependencies.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,366 copying build/lib/py4cytoscape/annotations.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,370 copying build/lib/py4cytoscape/commands.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,374 copying build/lib/py4cytoscape/layouts.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,377 copying build/lib/py4cytoscape/py4cytoscape_sandbox.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,380 copying build/lib/py4cytoscape/_version.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,383 copying build/lib/py4cytoscape/style_auto_mappings.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,388 copying build/lib/py4cytoscape/py4cytoscape_logger.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,391 copying build/lib/py4cytoscape/exceptions.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,393 copying build/lib/py4cytoscape/cy_ndex.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,396 copying build/lib/py4cytoscape/py4cytoscape_logger_settings.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,399 copying build/lib/py4cytoscape/networks.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,403 copying build/lib/py4cytoscape/py4cytoscape_notebook.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,406 copying build/lib/py4cytoscape/sandbox.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,410 copying build/lib/py4cytoscape/tools.py -> build/bdist.linux-armv7l/wheel/./py4cytoscape 2025-06-02T08:34:18,413 running install_egg_info 2025-06-02T08:34:18,446 Copying py4cytoscape.egg-info to build/bdist.linux-armv7l/wheel/./py4cytoscape-1.12.0-py3.11.egg-info 2025-06-02T08:34:18,456 running install_scripts 2025-06-02T08:34:18,468 creating build/bdist.linux-armv7l/wheel/py4cytoscape-1.12.0.dist-info/WHEEL 2025-06-02T08:34:18,471 creating '/tmp/pip-wheel-df9sns_x/py4cytoscape-1.12.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-02T08:34:18,475 adding 'py4cytoscape/__init__.py' 2025-06-02T08:34:18,478 adding 'py4cytoscape/_version.py' 2025-06-02T08:34:18,484 adding 'py4cytoscape/annotations.py' 2025-06-02T08:34:18,487 adding 'py4cytoscape/apps.py' 2025-06-02T08:34:18,490 adding 'py4cytoscape/collections.py' 2025-06-02T08:34:18,495 adding 'py4cytoscape/commands.py' 2025-06-02T08:34:18,498 adding 'py4cytoscape/cy_ndex.py' 2025-06-02T08:34:18,500 adding 'py4cytoscape/cytoscape_system.py' 2025-06-02T08:34:18,502 adding 'py4cytoscape/decorators.py' 2025-06-02T08:34:18,504 adding 'py4cytoscape/exceptions.py' 2025-06-02T08:34:18,507 adding 'py4cytoscape/filters.py' 2025-06-02T08:34:18,510 adding 'py4cytoscape/groups.py' 2025-06-02T08:34:18,513 adding 'py4cytoscape/layouts.py' 2025-06-02T08:34:18,518 adding 'py4cytoscape/network_selection.py' 2025-06-02T08:34:18,522 adding 'py4cytoscape/network_views.py' 2025-06-02T08:34:18,531 adding 'py4cytoscape/networks.py' 2025-06-02T08:34:18,534 adding 'py4cytoscape/notebook.py' 2025-06-02T08:34:18,536 adding 'py4cytoscape/py4cytoscape_logger.py' 2025-06-02T08:34:18,538 adding 'py4cytoscape/py4cytoscape_logger_settings.py' 2025-06-02T08:34:18,540 adding 'py4cytoscape/py4cytoscape_notebook.py' 2025-06-02T08:34:18,543 adding 'py4cytoscape/py4cytoscape_sandbox.py' 2025-06-02T08:34:18,544 adding 'py4cytoscape/py4cytoscape_tuning.py' 2025-06-02T08:34:18,550 adding 'py4cytoscape/py4cytoscape_utils.py' 2025-06-02T08:34:18,554 adding 'py4cytoscape/sandbox.py' 2025-06-02T08:34:18,556 adding 'py4cytoscape/session.py' 2025-06-02T08:34:18,563 adding 'py4cytoscape/style_auto_mappings.py' 2025-06-02T08:34:18,571 adding 'py4cytoscape/style_bypasses.py' 2025-06-02T08:34:18,577 adding 'py4cytoscape/style_defaults.py' 2025-06-02T08:34:18,579 adding 'py4cytoscape/style_dependencies.py' 2025-06-02T08:34:18,585 adding 'py4cytoscape/style_mappings.py' 2025-06-02T08:34:18,589 adding 'py4cytoscape/style_values.py' 2025-06-02T08:34:18,591 adding 'py4cytoscape/style_visual_props.py' 2025-06-02T08:34:18,593 adding 'py4cytoscape/styles.py' 2025-06-02T08:34:18,597 adding 'py4cytoscape/tables.py' 2025-06-02T08:34:18,601 adding 'py4cytoscape/tools.py' 2025-06-02T08:34:18,602 adding 'py4cytoscape/user_interface.py' 2025-06-02T08:34:18,605 adding 'py4cytoscape-1.12.0.dist-info/licenses/LICENSE.rst' 2025-06-02T08:34:18,606 adding 'py4cytoscape-1.12.0.dist-info/METADATA' 2025-06-02T08:34:18,607 adding 'py4cytoscape-1.12.0.dist-info/WHEEL' 2025-06-02T08:34:18,608 adding 'py4cytoscape-1.12.0.dist-info/top_level.txt' 2025-06-02T08:34:18,609 adding 'py4cytoscape-1.12.0.dist-info/RECORD' 2025-06-02T08:34:18,613 removing build/bdist.linux-armv7l/wheel 2025-06-02T08:34:18,734 Building wheel for py4cytoscape (setup.py): finished with status 'done' 2025-06-02T08:34:18,739 Created wheel for py4cytoscape: filename=py4cytoscape-1.12.0-py3-none-any.whl size=183060 sha256=d157e7114393005a1505e4b5061f1189692cbe2926da8690a27baa9d7a1672b4 2025-06-02T08:34:18,740 Stored in directory: /tmp/pip-ephem-wheel-cache-9ohw7b3q/wheels/73/17/c4/41eadd726a2859f7d06810b3fafb63f5eb1d8f99b5401c8268 2025-06-02T08:34:18,753 Successfully built py4cytoscape 2025-06-02T08:34:18,761 Removed build tracker: '/tmp/pip-build-tracker-_fkval1h'